ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd15o12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|BX088727.14| Zebrafish DNA sequence from clone DKEY-218A22 i... 40 2.4
2gb|AC109221.32| Mus musculus chromosome 7, clone RP23-207N2, com... 40 2.4
3gb|AC107732.11| Mus musculus chromosome 7, clone RP23-424E6, com... 38 9.5
4gb|AY074784.1| Triticum aestivum dehydroascorbate reductase (DHA... 38 9.5
5emb|CR356233.12| Zebrafish DNA sequence from clone CH211-262N1, ... 38 9.5
6emb|Z84494.1|HSLUCA7 Human DNA sequence from clone XXcos-7 on ch... 38 9.5

>emb|BX088727.14| Zebrafish DNA sequence from clone DKEY-218A22 in linkage group 2,
             complete sequence
          Length = 185178

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 154   ctcgcattattccaaaccca 173
             ||||||||||||||||||||
Sbjct: 28852 ctcgcattattccaaaccca 28833



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>gb|AC109221.32| Mus musculus chromosome 7, clone RP23-207N2, complete sequence
          Length = 195657

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 82    gccaggcagggggcagacag 101
             ||||||||||||||||||||
Sbjct: 71258 gccaggcagggggcagacag 71277



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>gb|AC107732.11| Mus musculus chromosome 7, clone RP23-424E6, complete sequence
          Length = 194045

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 158   cattattccaaacccagat 176
             |||||||||||||||||||
Sbjct: 52571 cattattccaaacccagat 52589



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>gb|AY074784.1| Triticum aestivum dehydroascorbate reductase (DHAR) mRNA, complete
           cds
          Length = 956

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                 
Query: 147 aggctngctcgcattattccaa 168
           ||||| ||||||||||||||||
Sbjct: 806 aggctcgctcgcattattccaa 785



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>emb|CR356233.12| Zebrafish DNA sequence from clone CH211-262N1, complete sequence
          Length = 146900

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 84     caggcagggggcagacagt 102
              |||||||||||||||||||
Sbjct: 107747 caggcagggggcagacagt 107729



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>emb|Z84494.1|HSLUCA7 Human DNA sequence from clone XXcos-7 on chromosome 3, complete
             sequence
          Length = 16950

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 82    gccaggcagggggcagaca 100
             |||||||||||||||||||
Sbjct: 12881 gccaggcagggggcagaca 12863


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 388,579
Number of Sequences: 3902068
Number of extensions: 388579
Number of successful extensions: 19080
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19074
Number of HSP's gapped (non-prelim): 6
length of query: 191
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 169
effective length of database: 17,147,199,772
effective search space: 2897876761468
effective search space used: 2897876761468
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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