ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd16d06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CCR1_MOUSE (P51675) C-C chemokine receptor type 1 (C-C CKR-1) (C... 29 9.6

>CCR1_MOUSE (P51675) C-C chemokine receptor type 1 (C-C CKR-1) (CC-CKR-1)|
           (CCR-1) (CCR1) (Macrophage inflammatory protein 1-alpha
           receptor) (MIP-1alpha-R) (RANTES-R) (CD191 antigen)
          Length = 355

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = -2

Query: 388 LVLVLGYQKAGSMLTGQGACKRLCAVSICFAVLLVIPLHWIPRNLLVCI 242
           LV+++ Y     +L  + + K++ AV + FA+ L+  L W P NL V +
Sbjct: 213 LVMIICYAGIIRILLRRPSEKKVKAVRLIFAITLLFFLLWTPYNLSVFV 261


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,502,431
Number of Sequences: 219361
Number of extensions: 1589189
Number of successful extensions: 3366
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 3299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3366
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4258037034
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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