ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd15o01 |
|---|---|
| Clone Library Name | barley_pub |
>CIGR2_ORYSA (Q8GVE1) Chitin-inducible gibberellin-responsive protein 2| Length = 544 Score = 42.0 bits (97), Expect = 0.001 Identities = 17/23 (73%), Positives = 20/23 (86%) Frame = -3 Query: 578 LEEKDGVIYLGWKNRKLVVSSAW 510 L E+DG +YLGWK+R LVVSSAW Sbjct: 521 LAERDGALYLGWKSRPLVVSSAW 543
>CIGR1_ORYSA (Q69VG1) Chitin-inducible gibberellin-responsive protein 1| Length = 571 Score = 38.1 bits (87), Expect = 0.018 Identities = 14/23 (60%), Positives = 20/23 (86%) Frame = -3 Query: 578 LEEKDGVIYLGWKNRKLVVSSAW 510 L+EKDG + LGW++RKL+ +SAW Sbjct: 548 LDEKDGAMLLGWRSRKLISASAW 570
>DWRF8_MAIZE (Q9ST48) DELLA protein DWARF8 (Protein dwarf-8)| Length = 630 Score = 36.6 bits (83), Expect = 0.053 Identities = 14/24 (58%), Positives = 18/24 (75%) Frame = -3 Query: 578 LEEKDGVIYLGWKNRKLVVSSAWR 507 +EEKDG + LGW R L+ +SAWR Sbjct: 600 VEEKDGCLTLGWHTRPLIATSAWR 623
>SLR1_ORYSA (Q7G7J6) DELLA protein SLR1 (Protein SLENDER RICE1) (Gibberellic| acid-insensitive mutant protein) (OsGAI) Length = 625 Score = 35.0 bits (79), Expect = 0.16 Identities = 13/24 (54%), Positives = 18/24 (75%) Frame = -3 Query: 578 LEEKDGVIYLGWKNRKLVVSSAWR 507 +EEK+G + LGW R L+ +SAWR Sbjct: 598 VEEKEGCLTLGWHTRPLIATSAWR 621
>SLN1_HORVU (Q8W127) DELLA protein SLN1 (Slender protein 1)| Length = 618 Score = 35.0 bits (79), Expect = 0.16 Identities = 13/24 (54%), Positives = 18/24 (75%) Frame = -3 Query: 578 LEEKDGVIYLGWKNRKLVVSSAWR 507 +EEK+G + LGW R L+ +SAWR Sbjct: 591 VEEKEGCLTLGWHTRPLIATSAWR 614
>RHT1_WHEAT (Q9ST59) DELLA protein RHT-1 (Reduced height protein 1) (Protein| Rht-B1/Rht-D1) Length = 623 Score = 35.0 bits (79), Expect = 0.16 Identities = 13/24 (54%), Positives = 18/24 (75%) Frame = -3 Query: 578 LEEKDGVIYLGWKNRKLVVSSAWR 507 +EEK+G + LGW R L+ +SAWR Sbjct: 596 VEEKEGCLTLGWHTRPLIATSAWR 619
>RGL1_ARATH (Q9C8Y3) DELLA protein RGL1 (RGA-like protein 1) (RGA-like protein)| Length = 511 Score = 34.3 bits (77), Expect = 0.26 Identities = 12/24 (50%), Positives = 18/24 (75%) Frame = -3 Query: 578 LEEKDGVIYLGWKNRKLVVSSAWR 507 +EE +G + LGW+ R L+ +SAWR Sbjct: 483 VEENEGCLLLGWQTRPLIATSAWR 506
>GAI_LYCES (Q7Y1B6) DELLA protein GAI (Gibberellic acid-insensitive mutant| protein) Length = 588 Score = 33.9 bits (76), Expect = 0.35 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = -3 Query: 578 LEEKDGVIYLGWKNRKLVVSSAWR 507 +EE DG + LGW R L+ +SAW+ Sbjct: 551 VEENDGCLMLGWHTRPLIATSAWK 574
>RGL2_ARATH (Q8GXW1) DELLA protein RGL2 (RGA-like protein 2) (Scarecrow-like| protein 19) Length = 547 Score = 33.9 bits (76), Expect = 0.35 Identities = 11/24 (45%), Positives = 18/24 (75%) Frame = -3 Query: 578 LEEKDGVIYLGWKNRKLVVSSAWR 507 +EE DG + +GW+ R L+ +SAW+ Sbjct: 522 VEENDGCLMIGWQTRPLITTSAWK 545
>GAI_ARATH (Q9LQT8) DELLA protein GAI (Gibberellic acid-insensitive mutant| protein) (Restoration of growth on ammonia protein 2) Length = 533 Score = 33.9 bits (76), Expect = 0.35 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = -3 Query: 578 LEEKDGVIYLGWKNRKLVVSSAWR 507 +EE DG + LGW R L+ +SAW+ Sbjct: 506 VEESDGCLMLGWHTRPLIATSAWK 529
>GAIPB_CUCMA (Q6EI05) DELLA protein GAIP-B (Gibberellic acid-insensitive phloem| protein B) (GAIP-B) (CmGAIP-B) Length = 587 Score = 32.7 bits (73), Expect = 0.77 Identities = 12/24 (50%), Positives = 18/24 (75%) Frame = -3 Query: 578 LEEKDGVIYLGWKNRKLVVSSAWR 507 +EE +G + LGW R L+V+SAW+ Sbjct: 554 VEENNGSLTLGWHTRPLIVTSAWK 577
>RGA2_BRACM (Q5BN22) DELLA protein RGA2 (RGA-like protein 2) (BrRGA2)| Length = 579 Score = 32.0 bits (71), Expect = 1.3 Identities = 11/24 (45%), Positives = 17/24 (70%) Frame = -3 Query: 578 LEEKDGVIYLGWKNRKLVVSSAWR 507 +EE +G + LGW R L+ +SAW+ Sbjct: 551 VEENNGCLMLGWHTRPLITTSAWK 574
>GAIP_CUCMA (Q6EI06) DELLA protein GAIP (Gibberellic acid-insensitive phloem| protein) (GAIP) (CmGAIP) Length = 579 Score = 32.0 bits (71), Expect = 1.3 Identities = 11/24 (45%), Positives = 17/24 (70%) Frame = -3 Query: 578 LEEKDGVIYLGWKNRKLVVSSAWR 507 +EE +G + LGW R L+ +SAW+ Sbjct: 547 VEENEGSLMLGWHTRPLIATSAWK 570
>RGA_ARATH (Q9SLH3) DELLA protein RGA (Repressor on the ga1-3 mutant)| (GAI-related sequence) (Restoration of growth on ammonia protein 1) Length = 587 Score = 32.0 bits (71), Expect = 1.3 Identities = 11/24 (45%), Positives = 17/24 (70%) Frame = -3 Query: 578 LEEKDGVIYLGWKNRKLVVSSAWR 507 +EE +G + LGW R L+ +SAW+ Sbjct: 558 VEESNGCLMLGWHTRPLITTSAWK 581
>GAI1_VITVI (Q8S4W7) DELLA protein GAI1 (Gibberellic acid-insensitive mutant| protein 1) (VvGAI1) Length = 590 Score = 31.6 bits (70), Expect = 1.7 Identities = 11/24 (45%), Positives = 17/24 (70%) Frame = -3 Query: 578 LEEKDGVIYLGWKNRKLVVSSAWR 507 +EE +G + LGW R L+ +SAW+ Sbjct: 552 VEENNGCLMLGWHTRPLIATSAWQ 575
>UHPT_SHIFL (P0AGC2) Hexose phosphate transport protein| Length = 463 Score = 31.2 bits (69), Expect = 2.2 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%) Frame = +1 Query: 343 CAQGRVDSWAPRSKQPQFFGLWN-SHSL 423 C+ + W PR K+ F G WN SH+L Sbjct: 143 CSYSTITKWTPRRKRGTFLGFWNISHNL 170
>UHPT_SALTY (P27670) Hexose phosphate transport protein| Length = 463 Score = 31.2 bits (69), Expect = 2.2 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%) Frame = +1 Query: 343 CAQGRVDSWAPRSKQPQFFGLWN-SHSL 423 C+ + W PR K+ F G WN SH+L Sbjct: 143 CSYSTITKWTPRRKRGTFLGFWNISHNL 170
>UHPT_ECOLI (P0AGC0) Hexose phosphate transport protein| Length = 463 Score = 31.2 bits (69), Expect = 2.2 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%) Frame = +1 Query: 343 CAQGRVDSWAPRSKQPQFFGLWN-SHSL 423 C+ + W PR K+ F G WN SH+L Sbjct: 143 CSYSTITKWTPRRKRGTFLGFWNISHNL 170
>UHPT_ECO57 (P0AGC1) Hexose phosphate transport protein| Length = 463 Score = 31.2 bits (69), Expect = 2.2 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%) Frame = +1 Query: 343 CAQGRVDSWAPRSKQPQFFGLWN-SHSL 423 C+ + W PR K+ F G WN SH+L Sbjct: 143 CSYSTITKWTPRRKRGTFLGFWNISHNL 170
>RGL3_ARATH (Q9LF53) DELLA protein RGL3 (RGA-like protein 3)| Length = 523 Score = 30.8 bits (68), Expect = 2.9 Identities = 10/24 (41%), Positives = 17/24 (70%) Frame = -3 Query: 578 LEEKDGVIYLGWKNRKLVVSSAWR 507 +EE DG + L W+ + L+ +SAW+ Sbjct: 493 VEENDGSLMLAWQTKPLIAASAWK 516
>FA26B_RAT (Q5RJQ8) Protein FAM26B| Length = 323 Score = 30.0 bits (66), Expect = 5.0 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = -3 Query: 443 NPRWNLISECEFHNPKNC 390 N WNL++EC++ KNC Sbjct: 77 NHTWNLVAECQYRRAKNC 94
>FA26B_MOUSE (Q8VEC4) Protein FAM26B| Length = 323 Score = 30.0 bits (66), Expect = 5.0 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = -3 Query: 443 NPRWNLISECEFHNPKNC 390 N WNL++EC++ KNC Sbjct: 77 NHTWNLVAECQYRRAKNC 94
>RGA1_BRACM (Q5BN23) DELLA protein RGA1 (RGA-like protein 1) (BrRGA1)| Length = 573 Score = 29.6 bits (65), Expect = 6.5 Identities = 10/24 (41%), Positives = 16/24 (66%) Frame = -3 Query: 578 LEEKDGVIYLGWKNRKLVVSSAWR 507 +EE +G + L W R L+ +SAW+ Sbjct: 545 VEENNGCLMLSWHTRPLITTSAWK 568 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 86,913,987 Number of Sequences: 219361 Number of extensions: 1769615 Number of successful extensions: 3866 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 3774 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3866 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4929664480 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
