ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd15o01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CIGR2_ORYSA (Q8GVE1) Chitin-inducible gibberellin-responsive pro... 42 0.001
2CIGR1_ORYSA (Q69VG1) Chitin-inducible gibberellin-responsive pro... 38 0.018
3DWRF8_MAIZE (Q9ST48) DELLA protein DWARF8 (Protein dwarf-8) 37 0.053
4SLR1_ORYSA (Q7G7J6) DELLA protein SLR1 (Protein SLENDER RICE1) (... 35 0.16
5SLN1_HORVU (Q8W127) DELLA protein SLN1 (Slender protein 1) 35 0.16
6RHT1_WHEAT (Q9ST59) DELLA protein RHT-1 (Reduced height protein ... 35 0.16
7RGL1_ARATH (Q9C8Y3) DELLA protein RGL1 (RGA-like protein 1) (RGA... 34 0.26
8GAI_LYCES (Q7Y1B6) DELLA protein GAI (Gibberellic acid-insensiti... 34 0.35
9RGL2_ARATH (Q8GXW1) DELLA protein RGL2 (RGA-like protein 2) (Sca... 34 0.35
10GAI_ARATH (Q9LQT8) DELLA protein GAI (Gibberellic acid-insensiti... 34 0.35
11GAIPB_CUCMA (Q6EI05) DELLA protein GAIP-B (Gibberellic acid-inse... 33 0.77
12RGA2_BRACM (Q5BN22) DELLA protein RGA2 (RGA-like protein 2) (BrR... 32 1.3
13GAIP_CUCMA (Q6EI06) DELLA protein GAIP (Gibberellic acid-insensi... 32 1.3
14RGA_ARATH (Q9SLH3) DELLA protein RGA (Repressor on the ga1-3 mut... 32 1.3
15GAI1_VITVI (Q8S4W7) DELLA protein GAI1 (Gibberellic acid-insensi... 32 1.7
16UHPT_SHIFL (P0AGC2) Hexose phosphate transport protein 31 2.2
17UHPT_SALTY (P27670) Hexose phosphate transport protein 31 2.2
18UHPT_ECOLI (P0AGC0) Hexose phosphate transport protein 31 2.2
19UHPT_ECO57 (P0AGC1) Hexose phosphate transport protein 31 2.2
20RGL3_ARATH (Q9LF53) DELLA protein RGL3 (RGA-like protein 3) 31 2.9
21FA26B_RAT (Q5RJQ8) Protein FAM26B 30 5.0
22FA26B_MOUSE (Q8VEC4) Protein FAM26B 30 5.0
23RGA1_BRACM (Q5BN23) DELLA protein RGA1 (RGA-like protein 1) (BrR... 30 6.5

>CIGR2_ORYSA (Q8GVE1) Chitin-inducible gibberellin-responsive protein 2|
          Length = 544

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 17/23 (73%), Positives = 20/23 (86%)
 Frame = -3

Query: 578 LEEKDGVIYLGWKNRKLVVSSAW 510
           L E+DG +YLGWK+R LVVSSAW
Sbjct: 521 LAERDGALYLGWKSRPLVVSSAW 543



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>CIGR1_ORYSA (Q69VG1) Chitin-inducible gibberellin-responsive protein 1|
          Length = 571

 Score = 38.1 bits (87), Expect = 0.018
 Identities = 14/23 (60%), Positives = 20/23 (86%)
 Frame = -3

Query: 578 LEEKDGVIYLGWKNRKLVVSSAW 510
           L+EKDG + LGW++RKL+ +SAW
Sbjct: 548 LDEKDGAMLLGWRSRKLISASAW 570



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>DWRF8_MAIZE (Q9ST48) DELLA protein DWARF8 (Protein dwarf-8)|
          Length = 630

 Score = 36.6 bits (83), Expect = 0.053
 Identities = 14/24 (58%), Positives = 18/24 (75%)
 Frame = -3

Query: 578 LEEKDGVIYLGWKNRKLVVSSAWR 507
           +EEKDG + LGW  R L+ +SAWR
Sbjct: 600 VEEKDGCLTLGWHTRPLIATSAWR 623



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>SLR1_ORYSA (Q7G7J6) DELLA protein SLR1 (Protein SLENDER RICE1) (Gibberellic|
           acid-insensitive mutant protein) (OsGAI)
          Length = 625

 Score = 35.0 bits (79), Expect = 0.16
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = -3

Query: 578 LEEKDGVIYLGWKNRKLVVSSAWR 507
           +EEK+G + LGW  R L+ +SAWR
Sbjct: 598 VEEKEGCLTLGWHTRPLIATSAWR 621



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>SLN1_HORVU (Q8W127) DELLA protein SLN1 (Slender protein 1)|
          Length = 618

 Score = 35.0 bits (79), Expect = 0.16
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = -3

Query: 578 LEEKDGVIYLGWKNRKLVVSSAWR 507
           +EEK+G + LGW  R L+ +SAWR
Sbjct: 591 VEEKEGCLTLGWHTRPLIATSAWR 614



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>RHT1_WHEAT (Q9ST59) DELLA protein RHT-1 (Reduced height protein 1) (Protein|
           Rht-B1/Rht-D1)
          Length = 623

 Score = 35.0 bits (79), Expect = 0.16
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = -3

Query: 578 LEEKDGVIYLGWKNRKLVVSSAWR 507
           +EEK+G + LGW  R L+ +SAWR
Sbjct: 596 VEEKEGCLTLGWHTRPLIATSAWR 619



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>RGL1_ARATH (Q9C8Y3) DELLA protein RGL1 (RGA-like protein 1) (RGA-like protein)|
          Length = 511

 Score = 34.3 bits (77), Expect = 0.26
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -3

Query: 578 LEEKDGVIYLGWKNRKLVVSSAWR 507
           +EE +G + LGW+ R L+ +SAWR
Sbjct: 483 VEENEGCLLLGWQTRPLIATSAWR 506



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>GAI_LYCES (Q7Y1B6) DELLA protein GAI (Gibberellic acid-insensitive mutant|
           protein)
          Length = 588

 Score = 33.9 bits (76), Expect = 0.35
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -3

Query: 578 LEEKDGVIYLGWKNRKLVVSSAWR 507
           +EE DG + LGW  R L+ +SAW+
Sbjct: 551 VEENDGCLMLGWHTRPLIATSAWK 574



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>RGL2_ARATH (Q8GXW1) DELLA protein RGL2 (RGA-like protein 2) (Scarecrow-like|
           protein 19)
          Length = 547

 Score = 33.9 bits (76), Expect = 0.35
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -3

Query: 578 LEEKDGVIYLGWKNRKLVVSSAWR 507
           +EE DG + +GW+ R L+ +SAW+
Sbjct: 522 VEENDGCLMIGWQTRPLITTSAWK 545



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>GAI_ARATH (Q9LQT8) DELLA protein GAI (Gibberellic acid-insensitive mutant|
           protein) (Restoration of growth on ammonia protein 2)
          Length = 533

 Score = 33.9 bits (76), Expect = 0.35
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -3

Query: 578 LEEKDGVIYLGWKNRKLVVSSAWR 507
           +EE DG + LGW  R L+ +SAW+
Sbjct: 506 VEESDGCLMLGWHTRPLIATSAWK 529



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>GAIPB_CUCMA (Q6EI05) DELLA protein GAIP-B (Gibberellic acid-insensitive phloem|
           protein B) (GAIP-B) (CmGAIP-B)
          Length = 587

 Score = 32.7 bits (73), Expect = 0.77
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -3

Query: 578 LEEKDGVIYLGWKNRKLVVSSAWR 507
           +EE +G + LGW  R L+V+SAW+
Sbjct: 554 VEENNGSLTLGWHTRPLIVTSAWK 577



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>RGA2_BRACM (Q5BN22) DELLA protein RGA2 (RGA-like protein 2) (BrRGA2)|
          Length = 579

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 578 LEEKDGVIYLGWKNRKLVVSSAWR 507
           +EE +G + LGW  R L+ +SAW+
Sbjct: 551 VEENNGCLMLGWHTRPLITTSAWK 574



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>GAIP_CUCMA (Q6EI06) DELLA protein GAIP (Gibberellic acid-insensitive phloem|
           protein) (GAIP) (CmGAIP)
          Length = 579

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 578 LEEKDGVIYLGWKNRKLVVSSAWR 507
           +EE +G + LGW  R L+ +SAW+
Sbjct: 547 VEENEGSLMLGWHTRPLIATSAWK 570



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>RGA_ARATH (Q9SLH3) DELLA protein RGA (Repressor on the ga1-3 mutant)|
           (GAI-related sequence) (Restoration of growth on ammonia
           protein 1)
          Length = 587

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 578 LEEKDGVIYLGWKNRKLVVSSAWR 507
           +EE +G + LGW  R L+ +SAW+
Sbjct: 558 VEESNGCLMLGWHTRPLITTSAWK 581



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>GAI1_VITVI (Q8S4W7) DELLA protein GAI1 (Gibberellic acid-insensitive mutant|
           protein 1) (VvGAI1)
          Length = 590

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 578 LEEKDGVIYLGWKNRKLVVSSAWR 507
           +EE +G + LGW  R L+ +SAW+
Sbjct: 552 VEENNGCLMLGWHTRPLIATSAWQ 575



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>UHPT_SHIFL (P0AGC2) Hexose phosphate transport protein|
          Length = 463

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +1

Query: 343 CAQGRVDSWAPRSKQPQFFGLWN-SHSL 423
           C+   +  W PR K+  F G WN SH+L
Sbjct: 143 CSYSTITKWTPRRKRGTFLGFWNISHNL 170



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>UHPT_SALTY (P27670) Hexose phosphate transport protein|
          Length = 463

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +1

Query: 343 CAQGRVDSWAPRSKQPQFFGLWN-SHSL 423
           C+   +  W PR K+  F G WN SH+L
Sbjct: 143 CSYSTITKWTPRRKRGTFLGFWNISHNL 170



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>UHPT_ECOLI (P0AGC0) Hexose phosphate transport protein|
          Length = 463

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +1

Query: 343 CAQGRVDSWAPRSKQPQFFGLWN-SHSL 423
           C+   +  W PR K+  F G WN SH+L
Sbjct: 143 CSYSTITKWTPRRKRGTFLGFWNISHNL 170



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>UHPT_ECO57 (P0AGC1) Hexose phosphate transport protein|
          Length = 463

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +1

Query: 343 CAQGRVDSWAPRSKQPQFFGLWN-SHSL 423
           C+   +  W PR K+  F G WN SH+L
Sbjct: 143 CSYSTITKWTPRRKRGTFLGFWNISHNL 170



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>RGL3_ARATH (Q9LF53) DELLA protein RGL3 (RGA-like protein 3)|
          Length = 523

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 578 LEEKDGVIYLGWKNRKLVVSSAWR 507
           +EE DG + L W+ + L+ +SAW+
Sbjct: 493 VEENDGSLMLAWQTKPLIAASAWK 516



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>FA26B_RAT (Q5RJQ8) Protein FAM26B|
          Length = 323

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 443 NPRWNLISECEFHNPKNC 390
           N  WNL++EC++   KNC
Sbjct: 77  NHTWNLVAECQYRRAKNC 94



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>FA26B_MOUSE (Q8VEC4) Protein FAM26B|
          Length = 323

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 443 NPRWNLISECEFHNPKNC 390
           N  WNL++EC++   KNC
Sbjct: 77  NHTWNLVAECQYRRAKNC 94



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>RGA1_BRACM (Q5BN23) DELLA protein RGA1 (RGA-like protein 1) (BrRGA1)|
          Length = 573

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 578 LEEKDGVIYLGWKNRKLVVSSAWR 507
           +EE +G + L W  R L+ +SAW+
Sbjct: 545 VEENNGCLMLSWHTRPLITTSAWK 568


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,913,987
Number of Sequences: 219361
Number of extensions: 1769615
Number of successful extensions: 3866
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 3774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3866
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4929664480
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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