ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd16c23 |
|---|---|
| Clone Library Name | barley_pub |
>AREG_HUMAN (P15514) Amphiregulin precursor (AR) (Colorectum cell-derived| growth factor) (CRDGF) Length = 252 Score = 30.8 bits (68), Expect = 1.9 Identities = 20/57 (35%), Positives = 26/57 (45%) Frame = -2 Query: 421 NAQKSKMARERNLEKLKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAEA 251 N +S+ ++ K KGGK + N+K N C Q F C E K EH EA Sbjct: 113 NKTESENTSDKPKRKKKGGKNGKNRRNRKKKN-PCNAEFQNF-CIHGECKYIEHLEA 167
>RDRP_SHVX (Q04575) RNA replication protein (194 kDa protein) (ORF 1 protein)| [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] Length = 1718 Score = 29.6 bits (65), Expect = 4.1 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = +1 Query: 1 IVAQQXXIVDDYIVMGTQPKQLGQQHTXSSD 93 I+ +Q I+DDYI GTQP+ +H S+D Sbjct: 1652 ILLKQPHIIDDYIPAGTQPR--NTEHPASAD 1680
>HD2C_ARATH (Q9LZR5) Histone deacetylase 2c (HD-tuins protein 3)| Length = 294 Score = 29.6 bits (65), Expect = 4.1 Identities = 19/55 (34%), Positives = 25/55 (45%) Frame = -2 Query: 409 SKMARERNLEKLKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAEAKH 245 SK A + + G Q + K A CK C +TF TSE + H +AKH Sbjct: 239 SKQAGKNSGGGSTGETSKQQQTPKSAGAFGCKSCTRTF---TSEMGLQSHTKAKH 290
>MST2_DROHY (Q08696) Axoneme-associated protein mst101(2)| Length = 1391 Score = 29.6 bits (65), Expect = 4.1 Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 6/78 (7%) Frame = -2 Query: 418 AQKSKMARERNLEKLKGGKGSQ------LEANKKAMNIQCKICMQTFICTTSEAKCKEHA 257 A+K K A E+N K K GKG + ++ + A +C + ++ KC+E A Sbjct: 945 AKKEKKAGEKNKLKKKAGKGKKKCKKLGKKSKRAAEKKKCAEAAKKEKEAATKKKCEERA 1004 Query: 256 EAKHPKSDLVQCFPHLKQ 203 + + ++ QC K+ Sbjct: 1005 KKQKEAAEKKQCEERAKK 1022
>UVRA_VIBCH (Q9KUW5) UvrABC system protein A (UvrA protein) (Excinuclease ABC| subunit A) Length = 940 Score = 28.9 bits (63), Expect = 7.1 Identities = 15/32 (46%), Positives = 20/32 (62%) Frame = -2 Query: 457 RLAEESTAMGGGNAQKSKMARERNLEKLKGGK 362 RL + +T + GG AQ+ K+ARE L K GK Sbjct: 821 RLGQSATTLSGGEAQRVKLARE--LSKRDTGK 850
>AREG_RAT (P24338) Amphiregulin precursor (AR) (Schwannoma-derived growth| factor) (SDGF) Length = 243 Score = 28.9 bits (63), Expect = 7.1 Identities = 17/56 (30%), Positives = 25/56 (44%) Frame = -2 Query: 421 NAQKSKMARERNLEKLKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAE 254 N + + + E+ K KGGKG + N+K C Q F C E + E+ E Sbjct: 103 NKTEGEKSSEKPKRKKKGGKGGKGRRNRKKKKNPCAAKFQNF-CIHGECRYIENLE 157
>ZN706_MOUSE (Q9D115) Zinc finger protein 706| Length = 76 Score = 28.9 bits (63), Expect = 7.1 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 4/66 (6%) Frame = -2 Query: 415 QKSKMARERNLEKLKGGKGSQ----LEANKKAMNIQCKICMQTFICTTSEAKCKEHAEAK 248 Q+ ++++N +K G K Q A K A+ C +C K+H E+K Sbjct: 5 QQKIQSQQKNAKKQAGQKKKQGHDQKAAAKAALIYTCTVCRTQM---PDPKTFKQHFESK 61 Query: 247 HPKSDL 230 HPK+ L Sbjct: 62 HPKTPL 67
>ZN706_HUMAN (Q9Y5V0) Zinc finger protein 706| Length = 76 Score = 28.9 bits (63), Expect = 7.1 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 4/66 (6%) Frame = -2 Query: 415 QKSKMARERNLEKLKGGKGSQ----LEANKKAMNIQCKICMQTFICTTSEAKCKEHAEAK 248 Q+ ++++N +K G K Q A K A+ C +C K+H E+K Sbjct: 5 QQKIQSQQKNAKKQAGQKKKQGHDQKAAAKAALIYTCTVCRTQM---PDPKTFKQHFESK 61 Query: 247 HPKSDL 230 HPK+ L Sbjct: 62 HPKTPL 67
>ZN706_CHICK (Q5ZMM5) Zinc finger protein 706| Length = 76 Score = 28.9 bits (63), Expect = 7.1 Identities = 19/69 (27%), Positives = 28/69 (40%) Frame = -2 Query: 436 AMGGGNAQKSKMARERNLEKLKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHA 257 A G Q + ++ E+ K Q A K A+ C +C K+H Sbjct: 2 ARGQQKIQSQQKNAKKQAEQKKKQGHDQKAAAKAALIYTCTVCRTQM---PDPKTFKQHF 58 Query: 256 EAKHPKSDL 230 E+KHPK+ L Sbjct: 59 ESKHPKTPL 67
>UVRA_VIBVY (Q7MHB5) UvrABC system protein A (UvrA protein) (Excinuclease ABC| subunit A) Length = 940 Score = 28.5 bits (62), Expect = 9.2 Identities = 15/32 (46%), Positives = 20/32 (62%) Frame = -2 Query: 457 RLAEESTAMGGGNAQKSKMARERNLEKLKGGK 362 RL + +T + GG AQ+ K+ARE L K GK Sbjct: 821 RLGQAATTLSGGEAQRVKLARE--LSKRDTGK 850
>UVRA_VIBVU (Q8DCJ3) UvrABC system protein A (UvrA protein) (Excinuclease ABC| subunit A) Length = 940 Score = 28.5 bits (62), Expect = 9.2 Identities = 15/32 (46%), Positives = 20/32 (62%) Frame = -2 Query: 457 RLAEESTAMGGGNAQKSKMARERNLEKLKGGK 362 RL + +T + GG AQ+ K+ARE L K GK Sbjct: 821 RLGQAATTLSGGEAQRVKLARE--LSKRDTGK 850
>UVRA_VIBPA (Q87LA0) UvrABC system protein A (UvrA protein) (Excinuclease ABC| subunit A) Length = 940 Score = 28.5 bits (62), Expect = 9.2 Identities = 15/32 (46%), Positives = 20/32 (62%) Frame = -2 Query: 457 RLAEESTAMGGGNAQKSKMARERNLEKLKGGK 362 RL + +T + GG AQ+ K+ARE L K GK Sbjct: 821 RLGQAATTLSGGEAQRVKLARE--LSKRDTGK 850
>UVRA_SHIFL (P0A699) UvrABC system protein A (UvrA protein) (Excinuclease ABC| subunit A) Length = 940 Score = 28.5 bits (62), Expect = 9.2 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -2 Query: 457 RLAEESTAMGGGNAQKSKMARERNLEKLKGGKGSQL 350 RL + +T + GG AQ+ K+ARE + K G G L Sbjct: 822 RLGQSATTLSGGEAQRVKLARELS----KRGTGQTL 853
>UVRA_ECOLI (P0A698) UvrABC system protein A (UvrA protein) (Excinuclease ABC| subunit A) Length = 940 Score = 28.5 bits (62), Expect = 9.2 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -2 Query: 457 RLAEESTAMGGGNAQKSKMARERNLEKLKGGKGSQL 350 RL + +T + GG AQ+ K+ARE + K G G L Sbjct: 822 RLGQSATTLSGGEAQRVKLARELS----KRGTGQTL 853
>UVRA_ECOL6 (Q8FB02) UvrABC system protein A (UvrA protein) (Excinuclease ABC| subunit A) Length = 940 Score = 28.5 bits (62), Expect = 9.2 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -2 Query: 457 RLAEESTAMGGGNAQKSKMARERNLEKLKGGKGSQL 350 RL + +T + GG AQ+ K+ARE + K G G L Sbjct: 822 RLGQSATTLSGGEAQRVKLARELS----KRGTGQTL 853
>UVRA_ECO57 (Q8X5U9) UvrABC system protein A (UvrA protein) (Excinuclease ABC| subunit A) Length = 940 Score = 28.5 bits (62), Expect = 9.2 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -2 Query: 457 RLAEESTAMGGGNAQKSKMARERNLEKLKGGKGSQL 350 RL + +T + GG AQ+ K+ARE + K G G L Sbjct: 822 RLGQSATTLSGGEAQRVKLARELS----KRGTGQTL 853
>UVRA_SALTY (P0A195) UvrABC system protein A (UvrA protein) (Excinuclease ABC| subunit A) Length = 941 Score = 28.5 bits (62), Expect = 9.2 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -2 Query: 457 RLAEESTAMGGGNAQKSKMARERNLEKLKGGKGSQL 350 RL + +T + GG AQ+ K+ARE + K G G L Sbjct: 822 RLGQSATTLSGGEAQRVKLARELS----KRGTGQTL 853
>UVRA_SALTI (P0A196) UvrABC system protein A (UvrA protein) (Excinuclease ABC| subunit A) Length = 941 Score = 28.5 bits (62), Expect = 9.2 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -2 Query: 457 RLAEESTAMGGGNAQKSKMARERNLEKLKGGKGSQL 350 RL + +T + GG AQ+ K+ARE + K G G L Sbjct: 822 RLGQSATTLSGGEAQRVKLARELS----KRGTGQTL 853 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,074,946 Number of Sequences: 219361 Number of extensions: 919351 Number of successful extensions: 3042 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 2933 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3040 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3130907202 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
