ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd15n19 |
|---|---|
| Clone Library Name | barley_pub |
>GSTU6_ORYSA (Q06398) Probable glutathione S-transferase GSTU6 (EC 2.5.1.18) (28| kDa cold-induced protein) Length = 236 Score = 72.0 bits (175), Expect(2) = 4e-25 Identities = 36/76 (47%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Frame = -1 Query: 665 PACSLATPTNVPVARFWAAYIDQNLVAPWWKMFVG-KTDKEKHEGTKQTLAAVEKLEVAL 489 P+ + P VARFWAAY+D + W + G KT++E+ Q +AA+E LE A Sbjct: 88 PSVMPSDPYERAVARFWAAYVDDKVRPAWLAILFGSKTEEERAAAVAQAVAALETLEGAF 147 Query: 488 RECSSGKPFFGGDNVG 441 ECS GKPFFGGD VG Sbjct: 148 GECSKGKPFFGGDGVG 163 Score = 62.8 bits (151), Expect(2) = 4e-25 Identities = 29/61 (47%), Positives = 39/61 (63%), Gaps = 1/61 (1%) Frame = -2 Query: 442 GYIDVVLGGMVAWMQGTEALCGLELLDATKTPLLLAWMERFGGMEPAKAVLP-DIDRLVE 266 G++DVVLGG + W + L G L+D +TP L AW ERF + AK V+P D D+L+E Sbjct: 163 GFVDVVLGGYLGWFTAIDKLIGRRLIDPARTPALAAWEERFRATDAAKGVVPDDADKLLE 222 Query: 265 F 263 F Sbjct: 223 F 223
>GSTX2_MAIZE (P50472) Probable glutathione S-transferase BZ2 (EC 2.5.1.18)| (Protein bronze-2) Length = 236 Score = 57.8 bits (138), Expect(3) = 9e-14 Identities = 27/71 (38%), Positives = 42/71 (59%) Frame = -2 Query: 454 ETTSGYIDVVLGGMVAWMQGTEALCGLELLDATKTPLLLAWMERFGGMEPAKAVLPDIDR 275 + G +D+ LG + ++ E L GL L+DA+ TPLL W +RF AK VLPD ++ Sbjct: 158 DAAPGLLDLALGCFLPALRACERLHGLSLIDASATPLLDGWSQRFAAHPAAKRVLPDTEK 217 Query: 274 LVEFAKMKRAQ 242 +V+F + + Q Sbjct: 218 VVQFTRFLQVQ 228 Score = 36.2 bits (82), Expect(3) = 9e-14 Identities = 18/57 (31%), Positives = 29/57 (50%) Frame = -1 Query: 623 RFWAAYIDQNLVAPWWKMFVGKTDKEKHEGTKQTLAAVEKLEVALRECSSGKPFFGG 453 RFW A+ID + + T + + + T AA+ LE A ++ S+G+ FF G Sbjct: 100 RFWTAFIDDKFWPALDAVSLAPTPGARAQAAEDTRAALSLLEEAFKDRSNGRAFFSG 156 Score = 21.9 bits (45), Expect(3) = 9e-14 Identities = 8/10 (80%), Positives = 9/10 (90%) Frame = -3 Query: 660 LLPGDPYQRA 631 LLP DPY+RA Sbjct: 88 LLPDDPYERA 97
>GSTX6_SOYBN (P32110) Probable glutathione S-transferase (EC 2.5.1.18) (Heat| shock protein 26A) (G2-4) Length = 225 Score = 42.7 bits (99), Expect(3) = 7e-09 Identities = 23/69 (33%), Positives = 37/69 (53%) Frame = -1 Query: 644 PTNVPVARFWAAYIDQNLVAPWWKMFVGKTDKEKHEGTKQTLAAVEKLEVALRECSSGKP 465 P +ARFW+ +ID +V K +KE+ + ++T A++ LE L++ K Sbjct: 91 PYQRALARFWSKFIDDKIVGAVSKSVFTVDEKEREKNVEETYEALQFLENELKD----KK 146 Query: 464 FFGGDNVGL 438 FFGG+ GL Sbjct: 147 FFGGEEFGL 155 Score = 33.5 bits (75), Expect(3) = 7e-09 Identities = 17/64 (26%), Positives = 29/64 (45%) Frame = -2 Query: 442 GYIDVVLGGMVAWMQGTEALCGLELLDATKTPLLLAWMERFGGMEPAKAVLPDIDRLVEF 263 G +D+ + W+ + + GL+L + K P+L W + F VLP D L + Sbjct: 154 GLVDIAAVFIAFWIPIFQEIAGLQLFTSEKFPILYKWSQEFLNHPFVHEVLPPRDPLFAY 213 Query: 262 AKMK 251 K + Sbjct: 214 FKAR 217 Score = 22.7 bits (47), Expect(3) = 7e-09 Identities = 8/10 (80%), Positives = 9/10 (90%) Frame = -3 Query: 660 LLPGDPYQRA 631 +LP DPYQRA Sbjct: 86 ILPSDPYQRA 95
>GSTXC_TOBAC (P49332) Probable glutathione S-transferase parC (EC 2.5.1.18)| (Auxin-regulated protein parC) Length = 221 Score = 40.8 bits (94), Expect(2) = 1e-07 Identities = 25/79 (31%), Positives = 43/79 (54%) Frame = -1 Query: 677 RDRTPACSLATPTNVPVARFWAAYIDQNLVAPWWKMFVGKTDKEKHEGTKQTLAAVEKLE 498 +D+ P+ + P + ARFWA YID+ L K++ K +E+ K + ++ LE Sbjct: 80 KDKAPSLLPSDPYDRAQARFWADYIDKKLYDFGRKLWATK-GEEQEAAKKDFIECLKVLE 138 Query: 497 VALRECSSGKPFFGGDNVG 441 AL + +P+FGG++ G Sbjct: 139 GALGD----RPYFGGESFG 153 Score = 34.7 bits (78), Expect(2) = 1e-07 Identities = 19/70 (27%), Positives = 31/70 (44%) Frame = -2 Query: 442 GYIDVVLGGMVAWMQGTEALCGLELLDATKTPLLLAWMERFGGMEPAKAVLPDIDRLVEF 263 G++D+ L G +W E + P +AW +R E LPD +++EF Sbjct: 153 GFVDIALIGFYSWFYAYETFGNFST--EAECPKFVAWAKRCMQRESVAKSLPDQPKVLEF 210 Query: 262 AKMKRAQKAL 233 K+ R + L Sbjct: 211 VKVLRQKFGL 220
>GSTX4_TOBAC (Q03666) Probable glutathione S-transferase (EC 2.5.1.18)| (Auxin-induced protein PCNT107) Length = 221 Score = 40.8 bits (94), Expect(2) = 2e-07 Identities = 26/79 (32%), Positives = 42/79 (53%) Frame = -1 Query: 677 RDRTPACSLATPTNVPVARFWAAYIDQNLVAPWWKMFVGKTDKEKHEGTKQTLAAVEKLE 498 +D+ P + P + ARFWA YID+ L K++ K +E+ K + ++ LE Sbjct: 80 KDKAPNLLPSDPYDRAQARFWADYIDKKLYDFGRKLWTTK-GEEQEAAKKDFIECLKVLE 138 Query: 497 VALRECSSGKPFFGGDNVG 441 AL + KP+FGG++ G Sbjct: 139 GALGD----KPYFGGESFG 153 Score = 34.3 bits (77), Expect(2) = 2e-07 Identities = 19/70 (27%), Positives = 31/70 (44%) Frame = -2 Query: 442 GYIDVVLGGMVAWMQGTEALCGLELLDATKTPLLLAWMERFGGMEPAKAVLPDIDRLVEF 263 G++D+ L G +W E + P +AW +R E LPD +++EF Sbjct: 153 GFVDIALIGYYSWFYAYETFGNFST--EAECPKFVAWAKRCMQRESVAKSLPDQPKVLEF 210 Query: 262 AKMKRAQKAL 233 K+ R + L Sbjct: 211 VKVLRQKFGL 220
>LGUL_SOYBN (P46417) Lactoylglutathione lyase (EC 4.4.1.5) (Methylglyoxalase)| (Aldoketomutase) (Glyoxalase I) Length = 219 Score = 47.0 bits (110), Expect(2) = 2e-07 Identities = 24/62 (38%), Positives = 36/62 (58%) Frame = -1 Query: 626 ARFWAAYIDQNLVAPWWKMFVGKTDKEKHEGTKQTLAAVEKLEVALRECSSGKPFFGGDN 447 ARFW YID+ + W KM++ K +E EG K+ ++ ++LE L + KPF+G D Sbjct: 95 ARFWVDYIDKKIYDTWKKMWLSK-GEEHEEGKKELISIFKQLEETLTD----KPFYGDDT 149 Query: 446 VG 441 G Sbjct: 150 FG 151 Score = 27.7 bits (60), Expect(2) = 2e-07 Identities = 15/61 (24%), Positives = 29/61 (47%) Frame = -2 Query: 454 ETTSGYIDVVLGGMVAWMQGTEALCGLELLDATKTPLLLAWMERFGGMEPAKAVLPDIDR 275 + T G++D+ L +W E ++ + + P L+AW++R E LPD + Sbjct: 147 DDTFGFVDLCLITFSSWFYTYETYGNFKMEE--ECPKLMAWVKRCMERETVSNTLPDAKK 204 Query: 274 L 272 + Sbjct: 205 V 205
>GSTXA_TOBAC (P25317) Probable glutathione S-transferase parA (EC 2.5.1.18)| (Auxin-regulated protein parA) (STR246C protein) Length = 220 Score = 40.8 bits (94), Expect(2) = 5e-04 Identities = 22/62 (35%), Positives = 37/62 (59%) Frame = -1 Query: 626 ARFWAAYIDQNLVAPWWKMFVGKTDKEKHEGTKQTLAAVEKLEVALRECSSGKPFFGGDN 447 ARFWA YID+ + + +++ GK +++ E K+ + ++ LE L K +FGGDN Sbjct: 96 ARFWADYIDKKIYSTGRRVWSGK-GEDQEEAKKEFIEILKTLEGEL----GNKTYFGGDN 150 Query: 446 VG 441 +G Sbjct: 151 LG 152 Score = 22.3 bits (46), Expect(2) = 5e-04 Identities = 9/15 (60%), Positives = 12/15 (80%), Gaps = 1/15 (6%) Frame = -3 Query: 669 DPC-LLPGDPYQRAR 628 D C LLP DPY+R++ Sbjct: 81 DKCPLLPSDPYERSQ 95
>GSTX1_SOLTU (P32111) Probable glutathione S-transferase (EC 2.5.1.18)| (Pathogenesis-related protein 1) Length = 217 Score = 31.2 bits (69), Expect(3) = 7e-04 Identities = 18/67 (26%), Positives = 29/67 (43%) Frame = -1 Query: 644 PTNVPVARFWAAYIDQNLVAPWWKMFVGKTDKEKHEGTKQTLAAVEKLEVALRECSSGKP 465 P + +ARFWA Y++ A W F ++EK + + + E ++C G Sbjct: 87 PYDRALARFWAKYVEDKGAAVWKSFFSKGEEQEKAKEEAYEMLKILDNEFKDKKCFVGDK 146 Query: 464 FFGGDNV 444 F D V Sbjct: 147 FGFADIV 153 Score = 26.9 bits (58), Expect(3) = 7e-04 Identities = 11/41 (26%), Positives = 20/41 (48%) Frame = -2 Query: 442 GYIDVVLGGMVAWMQGTEALCGLELLDATKTPLLLAWMERF 320 G+ D+V G ++ E + G+ L + K P AW + + Sbjct: 148 GFADIVANGAALYLGILEEVSGIVLATSEKFPNFCAWRDEY 188 Score = 23.1 bits (48), Expect(3) = 7e-04 Identities = 9/16 (56%), Positives = 11/16 (68%) Frame = -3 Query: 678 AGQDPCLLPGDPYQRA 631 A + P +LP DPY RA Sbjct: 76 AFEGPSILPKDPYDRA 91
>GSTX1_NICPL (P50471) Probable glutathione S-transferase MSR-1 (EC 2.5.1.18)| (Auxin-regulated protein MSR-1) Length = 219 Score = 39.7 bits (91), Expect(2) = 8e-04 Identities = 22/62 (35%), Positives = 35/62 (56%) Frame = -1 Query: 626 ARFWAAYIDQNLVAPWWKMFVGKTDKEKHEGTKQTLAAVEKLEVALRECSSGKPFFGGDN 447 ARFWA YID + + +++ GK +++ E K+ + + LE L K +FGGDN Sbjct: 96 ARFWANYIDNKIYSTGRRVWSGK-GEDQEEAKKEFIEIFKTLEGEL----GNKTYFGGDN 150 Query: 446 VG 441 +G Sbjct: 151 LG 152 Score = 22.7 bits (47), Expect(2) = 8e-04 Identities = 8/11 (72%), Positives = 10/11 (90%) Frame = -3 Query: 660 LLPGDPYQRAR 628 LLP DPYQR++ Sbjct: 85 LLPSDPYQRSQ 95
>GSTX2_TOBAC (Q03663) Probable glutathione S-transferase (EC 2.5.1.18)| (Auxin-induced protein PGNT35/PCNT111) Length = 223 Score = 32.3 bits (72), Expect(2) = 0.10 Identities = 19/68 (27%), Positives = 35/68 (51%) Frame = -1 Query: 644 PTNVPVARFWAAYIDQNLVAPWWKMFVGKTDKEKHEGTKQTLAAVEKLEVALRECSSGKP 465 P + +ARFWA ++D + A F + +E+ +G ++ ++ L+ L++ K Sbjct: 87 PYDRALARFWAKFLDDKVAAVVNTFF--RKGEEQEKGKEEVYEMLKVLDNELKD----KK 140 Query: 464 FFGGDNVG 441 FF GD G Sbjct: 141 FFAGDKFG 148 Score = 22.7 bits (47), Expect(2) = 0.10 Identities = 8/14 (57%), Positives = 10/14 (71%) Frame = -3 Query: 672 QDPCLLPGDPYQRA 631 + P +LP DPY RA Sbjct: 78 EGPSILPKDPYDRA 91
>DAG1_BOVIN (O18738) Dystroglycan precursor (Dystrophin-associated glycoprotein| 1) [Contains: Alpha-dystroglycan (Alpha-DG); Beta-dystroglycan (Beta-DG)] Length = 895 Score = 32.7 bits (73), Expect = 1.1 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 3/64 (4%) Frame = +1 Query: 193 LLLEIPILLSHFRLEPSEHVSSWQTQ---PTYQYLAELP*QVPFHQSAPSMPAVTGFWWR 363 LLL + + SH+ EPSE V W+ Q + L++L VP P AV G +R Sbjct: 20 LLLSVAVTQSHWPSEPSEAVRDWENQLEASMHSALSDLHETVPTVVGIPDGTAVVGRSFR 79 Query: 364 QGAP 375 P Sbjct: 80 VTIP 83
>GSTX1_TOBAC (Q03662) Probable glutathione S-transferase (EC 2.5.1.18)| (Auxin-induced protein PGNT1/PCNT110) Length = 223 Score = 28.1 bits (61), Expect(2) = 1.7 Identities = 20/68 (29%), Positives = 36/68 (52%) Frame = -1 Query: 644 PTNVPVARFWAAYIDQNLVAPWWKMFVGKTDKEKHEGTKQTLAAVEKLEVALRECSSGKP 465 P + +ARFWA ++D + A K F+ K +E+ + ++ ++ L+ L++ K Sbjct: 87 PYDRALARFWAKFLDDKVPAV-VKTFLRK-GEEQEKDKEEVCEMLKVLDNELKD----KK 140 Query: 464 FFGGDNVG 441 FF GD G Sbjct: 141 FFVGDKFG 148 Score = 22.7 bits (47), Expect(2) = 1.7 Identities = 8/14 (57%), Positives = 10/14 (71%) Frame = -3 Query: 672 QDPCLLPGDPYQRA 631 + P +LP DPY RA Sbjct: 78 EGPSILPKDPYDRA 91
>DAG1_HUMAN (Q14118) Dystroglycan precursor (Dystrophin-associated glycoprotein| 1) [Contains: Alpha-dystroglycan (Alpha-DG); Beta-dystroglycan (Beta-DG)] Length = 895 Score = 32.0 bits (71), Expect = 1.9 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 3/64 (4%) Frame = +1 Query: 193 LLLEIPILLSHFRLEPSEHVSSWQTQ---PTYQYLAELP*QVPFHQSAPSMPAVTGFWWR 363 LLL + + SH+ EPSE V W+ Q + L++L VP P AV G +R Sbjct: 20 LLLSVVMAQSHWPSEPSEAVRDWENQLEASMHSVLSDLHEAVPTVVGIPDGTAVVGRSFR 79 Query: 364 QGAP 375 P Sbjct: 80 VTIP 83
>DAG1_MOUSE (Q62165) Dystroglycan precursor (Dystrophin-associated glycoprotein| 1) [Contains: Alpha-dystroglycan (Alpha-DG); Beta-dystroglycan (Beta-DG)] Length = 893 Score = 31.2 bits (69), Expect = 3.2 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 3/64 (4%) Frame = +1 Query: 193 LLLEIPILLSHFRLEPSEHVSSWQTQ---PTYQYLAELP*QVPFHQSAPSMPAVTGFWWR 363 LLL + + +H+ EPSE V W+ Q + L++ VP P AV G +R Sbjct: 18 LLLSVAVAQAHWPSEPSEAVRDWKNQLEASMHSVLSDFQEAVPTVVGIPDGTAVVGRSFR 77 Query: 364 QGAP 375 P Sbjct: 78 VSIP 81
>YL_DROME (P98163) Putative vitellogenin receptor precursor (Protein yolkless)| (YL) Length = 1984 Score = 30.8 bits (68), Expect = 4.2 Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 2/40 (5%) Frame = +3 Query: 297 ALAGS-IPPKRSIHA-SSNGVLVASRSSRPQSASVPCIHA 410 AL GS I K SI+ ++ ++VA RS +PQ AS PC HA Sbjct: 1702 ALYGSRICHKISINVLNAQDIVVAGRSRQPQKASHPCAHA 1741
>VNUA_PRVKA (P33485) Probable nuclear antigen| Length = 1733 Score = 30.8 bits (68), Expect = 4.2 Identities = 12/18 (66%), Positives = 13/18 (72%) Frame = +3 Query: 618 EPSDGHVGRGRQGAGRGP 671 EP GHVGRG +G G GP Sbjct: 1042 EPGRGHVGRGEEGRGVGP 1059
>RIMS1_HUMAN (Q86UR5) Regulating synaptic membrane exocytosis protein 1| (Rab3-interacting molecule 1) (RIM 1) Length = 1692 Score = 30.4 bits (67), Expect = 5.4 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 2/49 (4%) Frame = +1 Query: 364 QGAPGHRAPR--FLASMRPYHPTRRQCSPTLSPPKNGFPLEHSLRATSS 504 QG P R P S+ HPTRR SPT + P++H R S Sbjct: 962 QGKPRSRLPNVPLQRSLDEIHPTRRSRSPTRHHDASRSPVDHRTRDVDS 1010
>CTPV_MYCTU (P77894) Probable cation-transporting ATPase V (EC 3.6.3.-)| Length = 770 Score = 30.4 bits (67), Expect = 5.4 Identities = 19/67 (28%), Positives = 26/67 (38%) Frame = -3 Query: 522 ARSSGEARGGPKGMLQWKAVLWRRQRRATLTSCWVVWSHGCKEPRRSVAWSSLTPPKPRY 343 +R G RG +G W RR+RR L W+ G S+ + + Y Sbjct: 109 SRCGGRPRGPVRGSASWPGEQNRRERRTWLPRVWLALPLGLLALGSSMFFGA-------Y 161 Query: 342 CWHGWSA 322 W GW A Sbjct: 162 PWAGWLA 168
>DAG1_RABIT (Q28685) Dystroglycan precursor (Dystrophin-associated glycoprotein| 1) [Contains: Alpha-dystroglycan (Alpha-DG); Beta-dystroglycan (Beta-DG)] Length = 895 Score = 30.4 bits (67), Expect = 5.4 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 3/64 (4%) Frame = +1 Query: 193 LLLEIPILLSHFRLEPSEHVSSWQTQ---PTYQYLAELP*QVPFHQSAPSMPAVTGFWWR 363 LLL + + SH+ EPSE V W+ Q + L++L +P P AV G +R Sbjct: 20 LLLCVAVAQSHWPSEPSEAVRDWENQLEASMHSVLSDLHEALPTVVGIPDGTAVVGRSFR 79 Query: 364 QGAP 375 P Sbjct: 80 VTIP 83
>KTNA1_STRPU (O61577) Katanin p60 ATPase-containing subunit (EC 3.6.4.3)| (Katanin p60 subunit) (p60 katanin) Length = 516 Score = 30.0 bits (66), Expect = 7.1 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 1/58 (1%) Frame = -3 Query: 654 PGDPYQRA-RRSVLGRLH*SESSRAMVEDVRGQNGQGET*RDEADARSSGEARGGPKG 484 P PYQRA R+ R S+ + + RG G + DARS G RGG +G Sbjct: 125 PSPPYQRAARKDPPRRSEPSKPANRAPGNDRGGRGPSDR---RGDARSGGGGRGGARG 179
>IF2_XANOR (Q5GXU9) Translation initiation factor IF-2| Length = 906 Score = 29.6 bits (65), Expect = 9.3 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 4/54 (7%) Frame = -3 Query: 633 ARRSVLGRLH*SESSRAMVEDVR----GQNGQGET*RDEADARSSGEARGGPKG 484 A + G+LH S + RA +VR G+ G + R + R S +A GP G Sbjct: 260 ATKRFAGQLHLSAADRARRSNVRGKPTGRPGSSSSRRGNDNGRGSNQANSGPHG 313
>RGF3_SCHPO (Q9Y7U5) Rho1 guanine nucleotide exchange factor 3| Length = 1275 Score = 29.6 bits (65), Expect = 9.3 Identities = 22/71 (30%), Positives = 33/71 (46%) Frame = +3 Query: 252 FILANSTNLSISGRTALAGSIPPKRSIHASSNGVLVASRSSRPQSASVPCIHATIPPNTT 431 + L N +LS S L S P + S L +S + RPQS P + PPN Sbjct: 196 YSLYNDISLSCSPEPYLPLS-PTRSPARTPSPIRLYSSDALRPQSPLSPSVEYLTPPNPY 254 Query: 432 SM*PDVVSSKE 464 S+ D+ S+++ Sbjct: 255 SLKSDISSTRQ 265 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 110,973,329 Number of Sequences: 219361 Number of extensions: 2586632 Number of successful extensions: 8342 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 7686 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 8327 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7026286028 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
