>SIF2_SCHPO (O74446) Sad1-interacting factor 2|
          Length = 446

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 19/108 (17%), Positives = 49/108 (45%)
 Frame = -1

Query: 616 QSIALDYYIRQVDGMVAEFTDINRGMEKTGTFTMERKKLFQLVGKANSNLADVILKLGLF 437
           QS+ +  +   V+  +    D  + + +TG   ++R+++   VG+      ++ L+  + 
Sbjct: 238 QSVKISLFEELVNETIDATKDTPQMIAETGRVNLKREEIMMAVGQLFILRININLQGSVL 297

Query: 436 ERSDIAWKNANYAQIWEFLRDEYELTQRFGNLDFKLKFVEHNIRFLQE 293
           +  ++ W       I+   R   E+ QR   L+ +++ +   +  L+E
Sbjct: 298 DSPELMWTEPQLEPIYTAARSYLEINQRVALLNQRVEVIGDLLSMLKE 345

>RPOA_CAMJR (Q5HSJ6) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 337

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
 Frame = -1

Query: 583 VDGMVAEFTDINRGMEKTGTFTMERKKL-FQLVGKANSNLADVILKLGLFERSDIAWKNA 407
           +DG+  EF  +   +E    F +  KKL F++ G++N  + +   K       +I  K+ 
Sbjct: 61  IDGVAHEFDSMRGMLEDVALFIINLKKLRFKIKGESNKEIVEFSFK----GSKEIYGKDL 116

Query: 406 NYAQIWEFLRDEYELTQRFGNLDFKLKF 323
           N  Q+    +D Y  T    N D +LKF
Sbjct: 117 NNDQVEVVNKDAYLATI---NEDAELKF 141

>DYR_HAEIN (P43791) Dihydrofolate reductase (EC 1.5.1.3)|
          Length = 160

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 20/81 (24%), Positives = 38/81 (46%)
 Frame = -1

Query: 532 TGTFTMERKKLFQLVGKANSNLADVILKLGLFERSDIAWKNANYAQIWEFLRDEYELTQR 353
           TG   +  +K F+ +G+      +++L   LFE   + WK+ ++     F+RD  E+   
Sbjct: 37  TGKPVIMGRKTFESIGRPLPKRTNIVLSRQLFEHEGVIWKD-SFESAVNFVRDFDEIMLI 95

Query: 352 FGNLDFKLKFVEHNIRFLQEI 290
            G   FK    + +  +L +I
Sbjct: 96  GGGELFKQYLPKADKLYLTQI 116

>RPOA_CAMJE (Q9PM80) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 337

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
 Frame = -1

Query: 583 VDGMVAEFTDINRGMEKTGTFTMERKKL-FQLVGKANSNLADVILKLGLFERSDIAWKNA 407
           +DG+  EF  +   +E    F +  KKL F++ G +N  + +   K       +I  K+ 
Sbjct: 61  IDGVAHEFDSMRGMLEDVALFIINLKKLRFKIKGDSNKEIVEFSFK----GSKEIYGKDL 116

Query: 406 NYAQIWEFLRDEYELTQRFGNLDFKLKF 323
           N  Q+    +D Y  T    N D +LKF
Sbjct: 117 NNDQVEVVNKDAYLATI---NEDAELKF 141

>GIDA_LEGPL (Q5WSS4) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gidA (Glucose-inhibited division protein A)
          Length = 624

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = -3

Query: 407 KLCSDLGVPPGRIRANPKIRKPRFQVEIR*AQHPVPPGDPPEQEVGFPGVADHHPDQ 237
           K   DL +P GR++     R  R  ++   +Q    PGD P     + G A  HP Q
Sbjct: 185 KSLRDLDLPVGRLKTGTPPRIDRRTIDF--SQMVEQPGDTPVPVFSYLGTASDHPQQ 239

>GIDA_LEGPH (Q5ZRJ2) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gidA (Glucose-inhibited division protein A)
          Length = 624

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = -3

Query: 407 KLCSDLGVPPGRIRANPKIRKPRFQVEIR*AQHPVPPGDPPEQEVGFPGVADHHPDQ 237
           K   DL +P GR++     R  R  ++   +Q    PGD P     + G A  HP Q
Sbjct: 185 KSLRDLDLPVGRLKTGTPPRIDRRTIDF--SQMVEQPGDTPVPVFSYLGAASDHPQQ 239

>GIDA_LEGPA (Q5X0Z8) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gidA (Glucose-inhibited division protein A)
          Length = 624

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = -3

Query: 407 KLCSDLGVPPGRIRANPKIRKPRFQVEIR*AQHPVPPGDPPEQEVGFPGVADHHPDQ 237
           K   DL +P GR++     R  R  ++   +Q    PGD P     + G A  HP Q
Sbjct: 185 KSLRDLDLPVGRLKTGTPPRIDRRTIDF--SQMVEQPGDTPVPVFSYLGTASDHPQQ 239

>FABH_HAEIN (P43711) 3-oxoacyl-[acyl-carrier-protein] synthase 3 (EC 2.3.1.41)|
           (3-oxoacyl-[acyl-carrier-protein] synthase III)
           (Beta-ketoacyl-ACP synthase III) (KAS III)
          Length = 316

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -1

Query: 547 RGMEKTGTFTMERKKLFQLVGKANSNLADVILKLGLFERSDIAW 416
           RG+EK+G   M+  + F+L  +  SN+ +  L     ++ D+ W
Sbjct: 196 RGIEKSGYIEMQGNETFKLAVRELSNVVEETLLANNLDKKDLDW 239

>GAW2_HUMAN (Q9NRZ4) HERV-W_3q26.32 provirus ancestral Gag polyprotein (Gag|
           polyprotein) [Contains: Matrix protein (Gag P15); Capsid
           protein (Core shell protein) (Gag P30)]
          Length = 362

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -1

Query: 463 DVILKLGLFERSDIAWKNANYAQIWEFLRDEYELTQRFG 347
           ++IL+L LF R +  W    Y Q +  LRD  +L ++ G
Sbjct: 59  NIILQLDLFCRKEGKWSEVPYVQTFFSLRDNSQLCKKCG 97

>CWC21_NEUCR (Q7RYH7) Pre-mRNA-splicing factor cwc-21|
          Length = 344

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = -2

Query: 210 TLSRSRCRAIARYPTRLLVRASERDRDHR 124
           +LSRSR R+ +R P R   R   RDRD+R
Sbjct: 315 SLSRSRSRSYSRSPDRDRYREKYRDRDNR 343

>TOP2M_CAEEL (P34534) Putative DNA topoisomerase II, mitochondrial precursor (EC|
            5.99.1.3)
          Length = 1053

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 13/107 (12%)
 Frame = -1

Query: 571  VAEFTDINRGMEKTGTFTMERKKLFQLVGKANSNLADVI-LKLGLFERSDIAWKNANY-- 401
            V EF++ +         T++RKK  + + K+NS+L +   L+  L E   +  +N     
Sbjct: 847  VLEFSERHTEKRVHFRITLDRKKSSRFLQKSNSDLLNYFKLRTSLTENRVLFDRNGELKE 906

Query: 400  --------AQIWEFLRDEYE--LTQRFGNLDFKLKFVEHNIRFLQEI 290
                    A+ +E  RD YE  L  +    + KL +VE+ + F++ +
Sbjct: 907  FGNISEIAAEFFEVRRDLYEKRLKIQKEECEAKLIYVENQLNFIEMV 953

>UBIE_AGRT5 (Q8UIH5) Ubiquinone/menaquinone biosynthesis methyltransferase ubiE|
           (EC 2.1.1.-)
          Length = 259

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 23/93 (24%), Positives = 41/93 (44%)
 Frame = -1

Query: 568 AEFTDINRGMEKTGTFTMERKKLFQLVGKANSNLADVILKLGLFERSDIAWKNANYAQIW 389
           A   DIN  M   G     +KKL   +    +N  ++  +   F+   +A+   N  +I 
Sbjct: 99  ATVLDINGSMLAVGEERAAKKKLSDNLTFVEANAEELPFEANTFDAYTVAFGIRNVPRID 158

Query: 388 EFLRDEYELTQRFGNLDFKLKFVEHNIRFLQEI 290
             L++ Y + +R G L   L+F E ++  L  +
Sbjct: 159 VALKEAYRVLKRGGRL-LVLEFSEVDMPLLDRV 190


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,658,003
Number of Sequences: 219361
Number of extensions: 1712055
Number of successful extensions: 5124
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5124
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5596027262
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)