ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd15n18 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF067732.1|AF067732 Hordeum vulgare ribosomal protein S12 (rps12) mRNA, complete cds Length = 760 Score = 1247 bits (629), Expect = 0.0 Identities = 629/629 (100%) Strand = Plus / Minus Query: 1 gctcttgatgatttacgctaaaggcagcagctgcctgataaacaaaggctcaaatgtcca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 713 gctcttgatgatttacgctaaaggcagcagctgcctgataaacaaaggctcaaatgtcca 654 Query: 61 aatcaacaatatctgctaggctcacacttgaaacttgtaacagtataagcccaagaacaa 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 653 aatcaacaatatctgctaggctcacacttgaaacttgtaacagtataagcccaagaacaa 594 Query: 121 aagcataattaaaccaaggaccaaaatgcccaacacaagttttgcatgatgaaacattct 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 593 aagcataattaaaccaaggaccaaaatgcccaacacaagttttgcatgatgaaacattct 534 Query: 181 caactattgagacttgacatactgctgcacgatgttaaggccctcggattcttcaccata 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 533 caactattgagacttgacatactgctgcacgatgttaaggccctcggattcttcaccata 474 Query: 241 gtccttgacaacaatgcaagagcagcctacaaccttccttgccttgccctcagtgtcgat 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 473 gtccttgacaacaatgcaagagcagcctacaaccttccttgccttgccctcagtgtcgat 414 Query: 301 cttgcaaagccctgcccactctccgagagttttagcacttggcacagtaaccaggtgaac 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 413 cttgcaaagccctgcccactctccgagagttttagcacttggcacagtaaccaggtgaac 354 Query: 361 attgtgctcagcgcatagtgccttaacaagcttcacgtaatcaggctggtcacaatcctc 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 353 attgtgctcagcgcatagtgccttaacaagcttcacgtaatcaggctggtcacaatcctc 294 Query: 421 agccagcacacaaagctgagcagcatgcttctcaatggacttggcagcctcacggagccc 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 293 agccagcacacaaagctgagcagcatgcttctcaatggacttggcagcctcacggagccc 234 Query: 481 cttcacaaggccatcatgagcacttgacttcttcatgacaagctgtagagcagtcatcaa 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 233 cttcacaaggccatcatgagcacttgacttcttcatgacaagctgtagagcagtcatcaa 174 Query: 541 gtccattggctcaccaagaatcggggtaggtgcctcgactggggcaacaactggtgctgg 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 173 gtccattggctcaccaagaatcggggtaggtgcctcgactggggcaacaactggtgctgg 114 Query: 601 ggcttcttccgccatctcgtccgctcaaa 629 ||||||||||||||||||||||||||||| Sbjct: 113 ggcttcttccgccatctcgtccgctcaaa 85
>ref|XM_476648.1| Oryza sativa (japonica cultivar-group), mRNA Length = 730 Score = 422 bits (213), Expect = e-115 Identities = 333/373 (89%) Strand = Plus / Minus Query: 194 ttgacatactgctgcacgatgttaaggccctcggattcttcaccatagtccttgacaaca 253 |||||||| | |||||| |||||||||||||| || ||||||||||||||||||||||| Sbjct: 503 ttgacatagtcctgcactatgttaaggccctcagactcttcaccatagtccttgacaacg 444 Query: 254 atgcaagagcagcctacaaccttccttgccttgccctcagtgtcgatcttgcaaagccct 313 | ||| |||||||| ||||||||||||||||||||||||| ||| ||||||||||||||| Sbjct: 443 acgcaggagcagcccacaaccttccttgccttgccctcagagtcaatcttgcaaagccct 384 Query: 314 gcccactctccgagagttttagcacttggcacagtaaccaggtgaacattgtgctcagcg 373 |||||||| || ||||| |||||||| ||||| ||||| |||||||| ||||||||||| Sbjct: 383 gcccactcgccaagagtcttagcactaggcacggtaacaaggtgaacgttgtgctcagca 324 Query: 374 catagtgccttaacaagcttcacgtaatcaggctggtcacaatcctcagccagcacacaa 433 || || |||||||| | ||| || |||||||| ||||| || |||||||| ||||||||| Sbjct: 323 cacagagccttaaccaacttgacataatcaggttggtcgcagtcctcagcaagcacacaa 264 Query: 434 agctgagcagcatgcttctcaatggacttggcagcctcacggagccccttcacaaggcca 493 |||||||||||||||||||| |||| |||||||||||||||||| ||||||||||| ||| Sbjct: 263 agctgagcagcatgcttctcgatggccttggcagcctcacggagacccttcacaagccca 204 Query: 494 tcatgagcacttgacttcttcatgacaagctgtagagcagtcatcaagtccattggctca 553 ||||||||||||||||||||||| |||||||| ||||||||||||| ||||| ||||| Sbjct: 203 tcatgagcacttgacttcttcatcacaagctgcagagcagtcatcagatccatgggctcc 144 Query: 554 ccaagaatcgggg 566 ||||||| ||||| Sbjct: 143 ccaagaaccgggg 131
>dbj|AK121635.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033051C16, full insert sequence Length = 734 Score = 422 bits (213), Expect = e-115 Identities = 333/373 (89%) Strand = Plus / Minus Query: 194 ttgacatactgctgcacgatgttaaggccctcggattcttcaccatagtccttgacaaca 253 |||||||| | |||||| |||||||||||||| || ||||||||||||||||||||||| Sbjct: 507 ttgacatagtcctgcactatgttaaggccctcagactcttcaccatagtccttgacaacg 448 Query: 254 atgcaagagcagcctacaaccttccttgccttgccctcagtgtcgatcttgcaaagccct 313 | ||| |||||||| ||||||||||||||||||||||||| ||| ||||||||||||||| Sbjct: 447 acgcaggagcagcccacaaccttccttgccttgccctcagagtcaatcttgcaaagccct 388 Query: 314 gcccactctccgagagttttagcacttggcacagtaaccaggtgaacattgtgctcagcg 373 |||||||| || ||||| |||||||| ||||| ||||| |||||||| ||||||||||| Sbjct: 387 gcccactcgccaagagtcttagcactaggcacggtaacaaggtgaacgttgtgctcagca 328 Query: 374 catagtgccttaacaagcttcacgtaatcaggctggtcacaatcctcagccagcacacaa 433 || || |||||||| | ||| || |||||||| ||||| || |||||||| ||||||||| Sbjct: 327 cacagagccttaaccaacttgacataatcaggttggtcgcagtcctcagcaagcacacaa 268 Query: 434 agctgagcagcatgcttctcaatggacttggcagcctcacggagccccttcacaaggcca 493 |||||||||||||||||||| |||| |||||||||||||||||| ||||||||||| ||| Sbjct: 267 agctgagcagcatgcttctcgatggccttggcagcctcacggagacccttcacaagccca 208 Query: 494 tcatgagcacttgacttcttcatgacaagctgtagagcagtcatcaagtccattggctca 553 ||||||||||||||||||||||| |||||||| ||||||||||||| ||||| ||||| Sbjct: 207 tcatgagcacttgacttcttcatcacaagctgcagagcagtcatcagatccatgggctcc 148 Query: 554 ccaagaatcgggg 566 ||||||| ||||| Sbjct: 147 ccaagaaccgggg 135
>dbj|AK058680.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-A01, full insert sequence Length = 730 Score = 422 bits (213), Expect = e-115 Identities = 333/373 (89%) Strand = Plus / Minus Query: 194 ttgacatactgctgcacgatgttaaggccctcggattcttcaccatagtccttgacaaca 253 |||||||| | |||||| |||||||||||||| || ||||||||||||||||||||||| Sbjct: 503 ttgacatagtcctgcactatgttaaggccctcagactcttcaccatagtccttgacaacg 444 Query: 254 atgcaagagcagcctacaaccttccttgccttgccctcagtgtcgatcttgcaaagccct 313 | ||| |||||||| ||||||||||||||||||||||||| ||| ||||||||||||||| Sbjct: 443 acgcaggagcagcccacaaccttccttgccttgccctcagagtcaatcttgcaaagccct 384 Query: 314 gcccactctccgagagttttagcacttggcacagtaaccaggtgaacattgtgctcagcg 373 |||||||| || ||||| |||||||| ||||| ||||| |||||||| ||||||||||| Sbjct: 383 gcccactcgccaagagtcttagcactaggcacggtaacaaggtgaacgttgtgctcagca 324 Query: 374 catagtgccttaacaagcttcacgtaatcaggctggtcacaatcctcagccagcacacaa 433 || || |||||||| | ||| || |||||||| ||||| || |||||||| ||||||||| Sbjct: 323 cacagagccttaaccaacttgacataatcaggttggtcgcagtcctcagcaagcacacaa 264 Query: 434 agctgagcagcatgcttctcaatggacttggcagcctcacggagccccttcacaaggcca 493 |||||||||||||||||||| |||| |||||||||||||||||| ||||||||||| ||| Sbjct: 263 agctgagcagcatgcttctcgatggccttggcagcctcacggagacccttcacaagccca 204 Query: 494 tcatgagcacttgacttcttcatgacaagctgtagagcagtcatcaagtccattggctca 553 ||||||||||||||||||||||| |||||||| ||||||||||||| ||||| ||||| Sbjct: 203 tcatgagcacttgacttcttcatcacaagctgcagagcagtcatcagatccatgggctcc 144 Query: 554 ccaagaatcgggg 566 ||||||| ||||| Sbjct: 143 ccaagaaccgggg 131
>ref|XM_477173.1| Oryza sativa (japonica cultivar-group), mRNA Length = 751 Score = 408 bits (206), Expect = e-111 Identities = 338/382 (88%) Strand = Plus / Minus Query: 191 gacttgacatactgctgcacgatgttaaggccctcggattcttcaccatagtccttgaca 250 ||||||||||| | ||| || ||||| |||||||| || |||||||| ||||||||||| Sbjct: 529 gacttgacatagtcctggactatgttgaggccctctgactcttcaccgaagtccttgaca 470 Query: 251 acaatgcaagagcagcctacaaccttccttgccttgccctcagtgtcgatcttgcaaagc 310 || | ||| ||||||||||| |||||||| ||||||||||||| || |||||||||||| Sbjct: 469 acgacgcaggagcagcctacgaccttcctcgccttgccctcagaatcaatcttgcaaagc 410 Query: 311 cctgcccactctccgagagttttagcacttggcacagtaaccaggtgaacattgtgctca 370 ||||||||||| || |||||||||||||| ||||| ||||| |||||||||||||||||| Sbjct: 409 cctgcccactcgccaagagttttagcactaggcacggtaacgaggtgaacattgtgctca 350 Query: 371 gcgcatagtgccttaacaagcttcacgtaatcaggctggtcacaatcctcagccagcaca 430 ||||| |||||||| || | ||| || ||||||||||||||||| |||||||| ||||| Sbjct: 349 gcgcagagtgccttgaccaacttgacataatcaggctggtcacagtcctcagcaagcacg 290 Query: 431 caaagctgagcagcatgcttctcaatggacttggcagcctcacggagccccttcacaagg 490 ||||||||||| |||||||||||||||| |||||| |||||||||||||||||||| || Sbjct: 289 caaagctgagcggcatgcttctcaatggccttggccgcctcacggagccccttcacgagc 230 Query: 491 ccatcatgagcacttgacttcttcatgacaagctgtagagcagtcatcaagtccattggc 550 ||||||||||| |||||||||||||| |||||||| ||||||||||||| |||||| ||| Sbjct: 229 ccatcatgagcgcttgacttcttcatcacaagctgcagagcagtcatcaggtccatcggc 170 Query: 551 tcaccaagaatcggggtaggtg 572 || ||||||| ||||| ||||| Sbjct: 169 tctccaagaaccggggcaggtg 148
>dbj|AK121720.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033080B09, full insert sequence Length = 754 Score = 408 bits (206), Expect = e-111 Identities = 338/382 (88%) Strand = Plus / Minus Query: 191 gacttgacatactgctgcacgatgttaaggccctcggattcttcaccatagtccttgaca 250 ||||||||||| | ||| || ||||| |||||||| || |||||||| ||||||||||| Sbjct: 526 gacttgacatagtcctggactatgttgaggccctctgactcttcaccgaagtccttgaca 467 Query: 251 acaatgcaagagcagcctacaaccttccttgccttgccctcagtgtcgatcttgcaaagc 310 || | ||| ||||||||||| |||||||| ||||||||||||| || |||||||||||| Sbjct: 466 acgacgcaggagcagcctacgaccttcctcgccttgccctcagaatcaatcttgcaaagc 407 Query: 311 cctgcccactctccgagagttttagcacttggcacagtaaccaggtgaacattgtgctca 370 ||||||||||| || |||||||||||||| ||||| ||||| |||||||||||||||||| Sbjct: 406 cctgcccactcgccaagagttttagcactaggcacggtaacgaggtgaacattgtgctca 347 Query: 371 gcgcatagtgccttaacaagcttcacgtaatcaggctggtcacaatcctcagccagcaca 430 ||||| |||||||| || | ||| || ||||||||||||||||| |||||||| ||||| Sbjct: 346 gcgcagagtgccttgaccaacttgacataatcaggctggtcacagtcctcagcaagcacg 287 Query: 431 caaagctgagcagcatgcttctcaatggacttggcagcctcacggagccccttcacaagg 490 ||||||||||| |||||||||||||||| |||||| |||||||||||||||||||| || Sbjct: 286 caaagctgagcggcatgcttctcaatggccttggccgcctcacggagccccttcacgagc 227 Query: 491 ccatcatgagcacttgacttcttcatgacaagctgtagagcagtcatcaagtccattggc 550 ||||||||||| |||||||||||||| |||||||| ||||||||||||| |||||| ||| Sbjct: 226 ccatcatgagcgcttgacttcttcatcacaagctgcagagcagtcatcaggtccatcggc 167 Query: 551 tcaccaagaatcggggtaggtg 572 || ||||||| ||||| ||||| Sbjct: 166 tctccaagaaccggggcaggtg 145
>dbj|AK059090.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-B10, full insert sequence Length = 751 Score = 408 bits (206), Expect = e-111 Identities = 338/382 (88%) Strand = Plus / Minus Query: 191 gacttgacatactgctgcacgatgttaaggccctcggattcttcaccatagtccttgaca 250 ||||||||||| | ||| || ||||| |||||||| || |||||||| ||||||||||| Sbjct: 529 gacttgacatagtcctggactatgttgaggccctctgactcttcaccgaagtccttgaca 470 Query: 251 acaatgcaagagcagcctacaaccttccttgccttgccctcagtgtcgatcttgcaaagc 310 || | ||| ||||||||||| |||||||| ||||||||||||| || |||||||||||| Sbjct: 469 acgacgcaggagcagcctacgaccttcctcgccttgccctcagaatcaatcttgcaaagc 410 Query: 311 cctgcccactctccgagagttttagcacttggcacagtaaccaggtgaacattgtgctca 370 ||||||||||| || |||||||||||||| ||||| ||||| |||||||||||||||||| Sbjct: 409 cctgcccactcgccaagagttttagcactaggcacggtaacgaggtgaacattgtgctca 350 Query: 371 gcgcatagtgccttaacaagcttcacgtaatcaggctggtcacaatcctcagccagcaca 430 ||||| |||||||| || | ||| || ||||||||||||||||| |||||||| ||||| Sbjct: 349 gcgcagagtgccttgaccaacttgacataatcaggctggtcacagtcctcagcaagcacg 290 Query: 431 caaagctgagcagcatgcttctcaatggacttggcagcctcacggagccccttcacaagg 490 ||||||||||| |||||||||||||||| |||||| |||||||||||||||||||| || Sbjct: 289 caaagctgagcggcatgcttctcaatggccttggccgcctcacggagccccttcacgagc 230 Query: 491 ccatcatgagcacttgacttcttcatgacaagctgtagagcagtcatcaagtccattggc 550 ||||||||||| |||||||||||||| |||||||| ||||||||||||| |||||| ||| Sbjct: 229 ccatcatgagcgcttgacttcttcatcacaagctgcagagcagtcatcaggtccatcggc 170 Query: 551 tcaccaagaatcggggtaggtg 572 || ||||||| ||||| ||||| Sbjct: 169 tctccaagaaccggggcaggtg 148
>gb|AY104036.1| Zea mays PCO068483 mRNA sequence Length = 845 Score = 402 bits (203), Expect = e-109 Identities = 338/383 (88%) Strand = Plus / Minus Query: 194 ttgacatactgctgcacgatgttaaggccctcggattcttcaccatagtccttgacaaca 253 ||||| |||| |||||| ||||||||||| || |||||||| || ||||||||||||||| Sbjct: 571 ttgacgtactcctgcactatgttaaggccttcagattcttcgccgtagtccttgacaaca 512 Query: 254 atgcaagagcagcctacaaccttccttgccttgccctcagtgtcgatcttgcaaagccct 313 | || |||||||||||||||||||| ||||||||||||| |||||||||||||||||| Sbjct: 511 acacaggagcagcctacaaccttcctcgccttgccctcagagtcgatcttgcaaagccca 452 Query: 314 gcccactctccgagagttttagcacttggcacagtaaccaggtgaacattgtgctcagcg 373 ||||||||||| |||||||| || || ||||||||||||||||| ||||||||||||||| Sbjct: 451 gcccactctccaagagttttggcgctaggcacagtaaccaggtggacattgtgctcagcg 392 Query: 374 catagtgccttaacaagcttcacgtaatcaggctggtcacaatcctcagccagcacacaa 433 || || ||||| || ||||| || |||||||||||||| || ||||| || ||||| || Sbjct: 391 cagagagccttcaccagcttgacataatcaggctggtcgcagtcctcggcaagcacgcag 332 Query: 434 agctgagcagcatgcttctcaatggacttggcagcctcacggagccccttcacaaggcca 493 |||||||| ||||||||||| |||| |||||||||||||| || ||||||||||||||| Sbjct: 331 agctgagcggcatgcttctcgatggctttggcagcctcacgaagacccttcacaaggcca 272 Query: 494 tcatgagcacttgacttcttcatgacaagctgtagagcagtcatcaagtccattggctca 553 |||||||||| ||||||||||||||| ||||| || |||||||||| |||||| || || Sbjct: 271 tcatgagcacctgacttcttcatgacgagctgcagggcagtcatcaggtccatcggttcc 212 Query: 554 ccaagaatcggggtaggtgcctc 576 ||||||| ||||||||||||||| Sbjct: 211 ccaagaaccggggtaggtgcctc 189
>gb|AY109069.1| Zea mays PCO128954 mRNA sequence Length = 755 Score = 394 bits (199), Expect = e-106 Identities = 343/391 (87%) Strand = Plus / Minus Query: 191 gacttgacatactgctgcacgatgttaaggccctcggattcttcaccatagtccttgaca 250 ||||||||||||| |||||| |||||||||||||| ||||||||||| |||||||||||| Sbjct: 544 gacttgacatactcctgcactatgttaaggccctcagattcttcaccgtagtccttgaca 485 Query: 251 acaatgcaagagcagcctacaaccttccttgccttgccctcagtgtcgatcttgcaaagc 310 || | || |||||||||||||||||||||||||||||||| | ||| |||||||||||| Sbjct: 484 acgacacaggagcagcctacaaccttccttgccttgccctcggagtcaatcttgcaaagc 425 Query: 311 cctgcccactctccgagagttttagcacttggcacagtaaccaggtgaacattgtgctca 370 || |||||||| || ||||| |||||| || ||||| || |||||||||||||| ||| Sbjct: 424 ccagcccactcgccaagagtcttagcagcaggaacagtgacaaggtgaacattgtgttca 365 Query: 371 gcgcatagtgccttaacaagcttcacgtaatcaggctggtcacaatcctcagccagcaca 430 || || || ||||| || ||||| || ||||| ||||||||||| |||||||| || || Sbjct: 364 gcacagagcgccttcaccagcttgacataatctggctggtcacagtcctcagcaagaacg 305 Query: 431 caaagctgagcagcatgcttctcaatggacttggcagcctcacggagccccttcacaagg 490 |||||||||||||||||||||||||||| |||||||||||| || || ||||||||||| Sbjct: 304 caaagctgagcagcatgcttctcaatggccttggcagcctcgcgaagacccttcacaagt 245 Query: 491 ccatcatgagcacttgacttcttcatgacaagctgtagagcagtcatcaagtccattggc 550 |||||||||||||||||||||||||| || ||||| || ||||||||||||||||||||| Sbjct: 244 ccatcatgagcacttgacttcttcatcaccagctgcagcgcagtcatcaagtccattggc 185 Query: 551 tcaccaagaatcggggtaggtgcctcgactg 581 || ||||||| ||||| |||||||| |||| Sbjct: 184 tctccaagaactggggttggtgcctcaactg 154
>gb|BT018309.1| Zea mays clone EL01T0206H08.c mRNA sequence Length = 608 Score = 379 bits (191), Expect = e-102 Identities = 341/391 (87%) Strand = Plus / Minus Query: 191 gacttgacatactgctgcacgatgttaaggccctcggattcttcaccatagtccttgaca 250 |||||||| |||| ||| || |||||||||||||| |||||||| |||||||||||||| Sbjct: 494 gacttgacgtactcctgaactatgttaaggccctcagattcttcgccatagtccttgacg 435 Query: 251 acaatgcaagagcagcctacaaccttccttgccttgccctcagtgtcgatcttgcaaagc 310 |||| || ||||| || ||||||||||| ||||||||||||| || |||||||||||| Sbjct: 434 acaacacaggagcaacccacaaccttcctcgccttgccctcagaatcaatcttgcaaagc 375 Query: 311 cctgcccactctccgagagttttagcacttggcacagtaaccaggtgaacattgtgctca 370 || | ||| || || ||||||||||| || |||||||||||||||||||| ||||||||| Sbjct: 374 ccagaccattcgccaagagttttagcgctaggcacagtaaccaggtgaacgttgtgctca 315 Query: 371 gcgcatagtgccttaacaagcttcacgtaatcaggctggtcacaatcctcagccagcaca 430 | ||| || ||||| || ||||| || ||||||||||||||||| ||||| || ||||| Sbjct: 314 gagcaaagagccttcaccagcttgacataatcaggctggtcacagtcctccgcaagcacg 255 Query: 431 caaagctgagcagcatgcttctcaatggacttggcagcctcacggagccccttcacaagg 490 |||||||||||||||||||||||||| | |||||||||||||| || ||||| |||||| Sbjct: 254 caaagctgagcagcatgcttctcaattgctttggcagcctcacgaagacccttaacaagg 195 Query: 491 ccatcatgagcacttgacttcttcatgacaagctgtagagcagtcatcaagtccattggc 550 ||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||| Sbjct: 194 ccatcatgagcacccgacttcttcatgacaagctgcagagcagtcatcaagtccatcggc 135 Query: 551 tcaccaagaatcggggtaggtgcctcgactg 581 || ||||| | ||||||||| ||||| |||| Sbjct: 134 tccccaaggaccggggtaggggcctcaactg 104
>gb|BT017581.1| Zea mays clone EL01N0429E05.c mRNA sequence Length = 747 Score = 379 bits (191), Expect = e-102 Identities = 335/383 (87%) Strand = Plus / Minus Query: 194 ttgacatactgctgcacgatgttaaggccctcggattcttcaccatagtccttgacaaca 253 ||||| |||| |||||| ||||||||||| || |||||||| || ||||||||||||||| Sbjct: 478 ttgacgtactcctgcactatgttaaggccttcagattcttcgccgtagtccttgacaaca 419 Query: 254 atgcaagagcagcctacaaccttccttgccttgccctcagtgtcgatcttgcaaagccct 313 | || |||||||||||||||||||| ||||||||||||| |||||||||||||||||| Sbjct: 418 acacaggagcagcctacaaccttcctcgccttgccctcagagtcgatcttgcaaagccca 359 Query: 314 gcccactctccgagagttttagcacttggcacagtaaccaggtgaacattgtgctcagcg 373 ||||||||||| |||||||| || || ||||||||||||||||| ||||||||||||||| Sbjct: 358 gcccactctccaagagttttggcgctaggcacagtaaccaggtggacattgtgctcagcg 299 Query: 374 catagtgccttaacaagcttcacgtaatcaggctggtcacaatcctcagccagcacacaa 433 || || ||||| || ||||| || |||||||||||||| || ||||| || ||||| || Sbjct: 298 cagagagccttcaccagcttgacataatcaggctggtcgcagtcctcggcaagcacgcag 239 Query: 434 agctgagcagcatgcttctcaatggacttggcagcctcacggagccccttcacaaggcca 493 |||||||| ||||||||||| |||| |||||||||||||| || ||||||||||||||| Sbjct: 238 agctgagcggcatgcttctcgatggctttggcagcctcacgaagacccttcacaaggcca 179 Query: 494 tcatgagcacttgacttcttcatgacaagctgtagagcagtcatcaagtccattggctca 553 |||| | | | ||||||||||||||| ||||| || |||||||||| |||||| || || Sbjct: 178 tcatcaccccctgacttcttcatgacgagctgcagggcagtcatcaggtccatcggttcc 119 Query: 554 ccaagaatcggggtaggtgcctc 576 ||||||| ||||||||||||||| Sbjct: 118 ccaagaaccggggtaggtgcctc 96
>gb|BT017926.1| Zea mays clone EL01N0519G01.c mRNA sequence Length = 580 Score = 371 bits (187), Expect = 2e-99 Identities = 298/335 (88%) Strand = Plus / Minus Query: 191 gacttgacatactgctgcacgatgttaaggccctcggattcttcaccatagtccttgaca 250 ||||||||||||| |||||| |||||||||||||| ||||||||||| ||||||||||| Sbjct: 344 gacttgacatactcctgcactatgttaaggccctcagattcttcaccgtagtccttgacg 285 Query: 251 acaatgcaagagcagcctacaaccttccttgccttgccctcagtgtcgatcttgcaaagc 310 || | ||| |||||||||||||||||||||||||||||||||| ||| |||||||||||| Sbjct: 284 acgacgcaggagcagcctacaaccttccttgccttgccctcagagtcaatcttgcaaagc 225 Query: 311 cctgcccactctccgagagttttagcacttggcacagtaaccaggtgaacattgtgctca 370 || |||||||| || ||||| ||||| || ||||| ||||||||||||||||||||| Sbjct: 224 ccagcccactcgccaagagtcttagcggcaggaacagtgaccaggtgaacattgtgctca 165 Query: 371 gcgcatagtgccttaacaagcttcacgtaatcaggctggtcacaatcctcagccagcaca 430 ||||| |||||||| || ||||| |||||||| ||||||||||| |||||||| ||||| Sbjct: 164 gcgcagagtgccttcaccagcttgacgtaatctggctggtcacagtcctcagcaagcacg 105 Query: 431 caaagctgagcagcatgcttctcaatggacttggcagcctcacggagccccttcacaagg 490 ||||||||||| || |||||||| |||| |||||||||||||||||| ||||||||||| Sbjct: 104 caaagctgagcggcgtgcttctcgatggccttggcagcctcacggagacccttcacaagt 45 Query: 491 ccatcatgagcacttgacttcttcatgacaagctg 525 || ||||||||||||||||||||||| || ||||| Sbjct: 44 ccgtcatgagcacttgacttcttcatcacgagctg 10
>ref|XM_477174.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2015 Score = 307 bits (155), Expect = 2e-80 Identities = 236/263 (89%) Strand = Plus / Minus Query: 310 ccctgcccactctccgagagttttagcacttggcacagtaaccaggtgaacattgtgctc 369 |||||||||||| || |||||||||||||| ||||| ||||| ||||||||||||||||| Sbjct: 1339 ccctgcccactcgccaagagttttagcactaggcacggtaacgaggtgaacattgtgctc 1280 Query: 370 agcgcatagtgccttaacaagcttcacgtaatcaggctggtcacaatcctcagccagcac 429 |||||| |||||||| || | ||| || ||||||||||||||||| |||||||| ||||| Sbjct: 1279 agcgcagagtgccttgaccaacttgacataatcaggctggtcacagtcctcagcaagcac 1220 Query: 430 acaaagctgagcagcatgcttctcaatggacttggcagcctcacggagccccttcacaag 489 ||||||||||| |||||||||||||||| |||||| |||||||||||||||||||| || Sbjct: 1219 gcaaagctgagcggcatgcttctcaatggccttggccgcctcacggagccccttcacgag 1160 Query: 490 gccatcatgagcacttgacttcttcatgacaagctgtagagcagtcatcaagtccattgg 549 ||||||||||| |||||||||||||| |||||||| ||||||||||||| |||||| || Sbjct: 1159 cccatcatgagcgcttgacttcttcatcacaagctgcagagcagtcatcaggtccatcgg 1100 Query: 550 ctcaccaagaatcggggtaggtg 572 ||| ||||||| ||||| ||||| Sbjct: 1099 ctctccaagaaccggggcaggtg 1077 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Minus Query: 243 ccttgacaacaatgcaagagcagcctacaaccttccttgccttgccctcagtgtcgatct 302 |||||||||| | ||| ||||||||||| |||||||| ||||||||||||| || |||| Sbjct: 1667 ccttgacaacgacgcaggagcagcctacgaccttcctcgccttgccctcagaatcaatct 1608 Query: 303 tgcaaagc 310 |||||||| Sbjct: 1607 tgcaaagc 1600
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 307 bits (155), Expect = 2e-80 Identities = 236/263 (89%) Strand = Plus / Plus Query: 310 ccctgcccactctccgagagttttagcacttggcacagtaaccaggtgaacattgtgctc 369 |||||||||||| || |||||||||||||| ||||| ||||| ||||||||||||||||| Sbjct: 7266008 ccctgcccactcgccaagagttttagcactaggcacggtaacgaggtgaacattgtgctc 7266067 Query: 370 agcgcatagtgccttaacaagcttcacgtaatcaggctggtcacaatcctcagccagcac 429 |||||| |||||||| || | ||| || ||||||||||||||||| |||||||| ||||| Sbjct: 7266068 agcgcagagtgccttgaccaacttgacataatcaggctggtcacagtcctcagcaagcac 7266127 Query: 430 acaaagctgagcagcatgcttctcaatggacttggcagcctcacggagccccttcacaag 489 ||||||||||| |||||||||||||||| |||||| |||||||||||||||||||| || Sbjct: 7266128 gcaaagctgagcggcatgcttctcaatggccttggccgcctcacggagccccttcacgag 7266187 Query: 490 gccatcatgagcacttgacttcttcatgacaagctgtagagcagtcatcaagtccattgg 549 ||||||||||| |||||||||||||| |||||||| ||||||||||||| |||||| || Sbjct: 7266188 cccatcatgagcgcttgacttcttcatcacaagctgcagagcagtcatcaggtccatcgg 7266247 Query: 550 ctcaccaagaatcggggtaggtg 572 ||| ||||||| ||||| ||||| Sbjct: 7266248 ctctccaagaaccggggcaggtg 7266270 Score = 280 bits (141), Expect = 5e-72 Identities = 228/257 (88%) Strand = Plus / Minus Query: 310 ccctgcccactctccgagagttttagcacttggcacagtaaccaggtgaacattgtgctc 369 |||||||||||| || ||||| |||||||| ||||| ||||| |||||||| |||||||| Sbjct: 2647398 ccctgcccactcgccaagagtcttagcactaggcacggtaacaaggtgaacgttgtgctc 2647339 Query: 370 agcgcatagtgccttaacaagcttcacgtaatcaggctggtcacaatcctcagccagcac 429 ||| || || |||||||| | ||| || |||||||| ||||| || |||||||| ||||| Sbjct: 2647338 agcacacagagccttaaccaacttgacataatcaggttggtcgcagtcctcagcaagcac 2647279 Query: 430 acaaagctgagcagcatgcttctcaatggacttggcagcctcacggagccccttcacaag 489 |||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||| Sbjct: 2647278 acaaagctgagcagcatgcttctcgatggccttggcagcctcacggagacccttcacaag 2647219 Query: 490 gccatcatgagcacttgacttcttcatgacaagctgtagagcagtcatcaagtccattgg 549 |||||||||||||||||||||||||| |||||||| ||||||||||||| ||||| || Sbjct: 2647218 cccatcatgagcacttgacttcttcatcacaagctgcagagcagtcatcagatccatggg 2647159 Query: 550 ctcaccaagaatcgggg 566 ||| ||||||| ||||| Sbjct: 2647158 ctccccaagaaccgggg 2647142 Score = 87.7 bits (44), Expect = 4e-14 Identities = 62/68 (91%) Strand = Plus / Minus Query: 243 ccttgacaacaatgcaagagcagcctacaaccttccttgccttgccctcagtgtcgatct 302 |||||||||| | ||| |||||||| ||||||||||||||||||||||||| ||| |||| Sbjct: 2648109 ccttgacaacgacgcaggagcagcccacaaccttccttgccttgccctcagagtcaatct 2648050 Query: 303 tgcaaagc 310 |||||||| Sbjct: 2648049 tgcaaagc 2648042 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 243 ccttgacaacaatgcaagagcagcctacaaccttccttgccttgccctcagtgtcgatct 302 |||||||||| | ||| ||||||||||| |||||||| ||||||||||||| || |||| Sbjct: 7265680 ccttgacaacgacgcaggagcagcctacgaccttcctcgccttgccctcagaatcaatct 7265739 Query: 303 tgcaaagc 310 |||||||| Sbjct: 7265740 tgcaaagc 7265747 Score = 63.9 bits (32), Expect = 6e-07 Identities = 47/52 (90%) Strand = Plus / Minus Query: 194 ttgacatactgctgcacgatgttaaggccctcggattcttcaccatagtcct 245 |||||||| | |||||| |||||||||||||| || |||||||||||||||| Sbjct: 2648248 ttgacatagtcctgcactatgttaaggccctcagactcttcaccatagtcct 2648197
>dbj|AP005764.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0016A21 Length = 144076 Score = 307 bits (155), Expect = 2e-80 Identities = 236/263 (89%) Strand = Plus / Plus Query: 310 ccctgcccactctccgagagttttagcacttggcacagtaaccaggtgaacattgtgctc 369 |||||||||||| || |||||||||||||| ||||| ||||| ||||||||||||||||| Sbjct: 106492 ccctgcccactcgccaagagttttagcactaggcacggtaacgaggtgaacattgtgctc 106551 Query: 370 agcgcatagtgccttaacaagcttcacgtaatcaggctggtcacaatcctcagccagcac 429 |||||| |||||||| || | ||| || ||||||||||||||||| |||||||| ||||| Sbjct: 106552 agcgcagagtgccttgaccaacttgacataatcaggctggtcacagtcctcagcaagcac 106611 Query: 430 acaaagctgagcagcatgcttctcaatggacttggcagcctcacggagccccttcacaag 489 ||||||||||| |||||||||||||||| |||||| |||||||||||||||||||| || Sbjct: 106612 gcaaagctgagcggcatgcttctcaatggccttggccgcctcacggagccccttcacgag 106671 Query: 490 gccatcatgagcacttgacttcttcatgacaagctgtagagcagtcatcaagtccattgg 549 ||||||||||| |||||||||||||| |||||||| ||||||||||||| |||||| || Sbjct: 106672 cccatcatgagcgcttgacttcttcatcacaagctgcagagcagtcatcaggtccatcgg 106731 Query: 550 ctcaccaagaatcggggtaggtg 572 ||| ||||||| ||||| ||||| Sbjct: 106732 ctctccaagaaccggggcaggtg 106754 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 243 ccttgacaacaatgcaagagcagcctacaaccttccttgccttgccctcagtgtcgatct 302 |||||||||| | ||| ||||||||||| |||||||| ||||||||||||| || |||| Sbjct: 106164 ccttgacaacgacgcaggagcagcctacgaccttcctcgccttgccctcagaatcaatct 106223 Query: 303 tgcaaagc 310 |||||||| Sbjct: 106224 tgcaaagc 106231
>dbj|AK071026.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023078K20, full insert sequence Length = 2015 Score = 307 bits (155), Expect = 2e-80 Identities = 236/263 (89%) Strand = Plus / Minus Query: 310 ccctgcccactctccgagagttttagcacttggcacagtaaccaggtgaacattgtgctc 369 |||||||||||| || |||||||||||||| ||||| ||||| ||||||||||||||||| Sbjct: 1339 ccctgcccactcgccaagagttttagcactaggcacggtaacgaggtgaacattgtgctc 1280 Query: 370 agcgcatagtgccttaacaagcttcacgtaatcaggctggtcacaatcctcagccagcac 429 |||||| |||||||| || | ||| || ||||||||||||||||| |||||||| ||||| Sbjct: 1279 agcgcagagtgccttgaccaacttgacataatcaggctggtcacagtcctcagcaagcac 1220 Query: 430 acaaagctgagcagcatgcttctcaatggacttggcagcctcacggagccccttcacaag 489 ||||||||||| |||||||||||||||| |||||| |||||||||||||||||||| || Sbjct: 1219 gcaaagctgagcggcatgcttctcaatggccttggccgcctcacggagccccttcacgag 1160 Query: 490 gccatcatgagcacttgacttcttcatgacaagctgtagagcagtcatcaagtccattgg 549 ||||||||||| |||||||||||||| |||||||| ||||||||||||| |||||| || Sbjct: 1159 cccatcatgagcgcttgacttcttcatcacaagctgcagagcagtcatcaggtccatcgg 1100 Query: 550 ctcaccaagaatcggggtaggtg 572 ||| ||||||| ||||| ||||| Sbjct: 1099 ctctccaagaaccggggcaggtg 1077 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Minus Query: 243 ccttgacaacaatgcaagagcagcctacaaccttccttgccttgccctcagtgtcgatct 302 |||||||||| | ||| ||||||||||| |||||||| ||||||||||||| || |||| Sbjct: 1667 ccttgacaacgacgcaggagcagcctacgaccttcctcgccttgccctcagaatcaatct 1608 Query: 303 tgcaaagc 310 |||||||| Sbjct: 1607 tgcaaagc 1600
>dbj|AP003703.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1027_G06 Length = 121885 Score = 280 bits (141), Expect = 5e-72 Identities = 228/257 (88%) Strand = Plus / Minus Query: 310 ccctgcccactctccgagagttttagcacttggcacagtaaccaggtgaacattgtgctc 369 |||||||||||| || ||||| |||||||| ||||| ||||| |||||||| |||||||| Sbjct: 73116 ccctgcccactcgccaagagtcttagcactaggcacggtaacaaggtgaacgttgtgctc 73057 Query: 370 agcgcatagtgccttaacaagcttcacgtaatcaggctggtcacaatcctcagccagcac 429 ||| || || |||||||| | ||| || |||||||| ||||| || |||||||| ||||| Sbjct: 73056 agcacacagagccttaaccaacttgacataatcaggttggtcgcagtcctcagcaagcac 72997 Query: 430 acaaagctgagcagcatgcttctcaatggacttggcagcctcacggagccccttcacaag 489 |||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||| Sbjct: 72996 acaaagctgagcagcatgcttctcgatggccttggcagcctcacggagacccttcacaag 72937 Query: 490 gccatcatgagcacttgacttcttcatgacaagctgtagagcagtcatcaagtccattgg 549 |||||||||||||||||||||||||| |||||||| ||||||||||||| ||||| || Sbjct: 72936 cccatcatgagcacttgacttcttcatcacaagctgcagagcagtcatcagatccatggg 72877 Query: 550 ctcaccaagaatcgggg 566 ||| ||||||| ||||| Sbjct: 72876 ctccccaagaaccgggg 72860 Score = 87.7 bits (44), Expect = 4e-14 Identities = 62/68 (91%) Strand = Plus / Minus Query: 243 ccttgacaacaatgcaagagcagcctacaaccttccttgccttgccctcagtgtcgatct 302 |||||||||| | ||| |||||||| ||||||||||||||||||||||||| ||| |||| Sbjct: 73827 ccttgacaacgacgcaggagcagcccacaaccttccttgccttgccctcagagtcaatct 73768 Query: 303 tgcaaagc 310 |||||||| Sbjct: 73767 tgcaaagc 73760 Score = 63.9 bits (32), Expect = 6e-07 Identities = 47/52 (90%) Strand = Plus / Minus Query: 194 ttgacatactgctgcacgatgttaaggccctcggattcttcaccatagtcct 245 |||||||| | |||||| |||||||||||||| || |||||||||||||||| Sbjct: 73966 ttgacatagtcctgcactatgttaaggccctcagactcttcaccatagtcct 73915
>emb|BX819283.1|CNS0A9Q1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB63ZH09 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 702 Score = 113 bits (57), Expect = 7e-22 Identities = 162/197 (82%) Strand = Plus / Minus Query: 260 gagcagcctacaaccttccttgccttgccctcagtgtcgatcttgcaaagccctgcccac 319 ||||| || |||||||||||||| |||||||||| || ||||||||||| || ||||| Sbjct: 416 gagcatccaacaaccttccttgcattgccctcagaatcaatcttgcaaagaccagcccat 357 Query: 320 tctccgagagttttagcacttggcacagtaaccaggtgaacattgtgctcagcgcatagt 379 || ||||| ||||| |||||||| ||||||| || | | |||| |||||||| || Sbjct: 356 tcgccgagtgttttggcacttggaacagtaagcaatttgatgctgtggtcagcgcaaaga 297 Query: 380 gccttaacaagcttcacgtaatcaggctggtcacaatcctcagccagcacacaaagctga 439 || |||||||||||||| |||||||| |||| ||||| |||||||| ||||| |||||| Sbjct: 296 gctttaacaagcttcacataatcaggttggttgcaatcttcagccaggacacagagctga 237 Query: 440 gcagcatgcttctcaat 456 ||| | |||||||||| Sbjct: 236 gcattacgcttctcaat 220
>ref|NM_179850.1| Arabidopsis thaliana structural constituent of ribosome AT2G32060 transcript variant AT2G32060.3 mRNA, complete cds Length = 694 Score = 105 bits (53), Expect = 2e-19 Identities = 161/197 (81%) Strand = Plus / Minus Query: 260 gagcagcctacaaccttccttgccttgccctcagtgtcgatcttgcaaagccctgcccac 319 ||||| || |||||||||||||| |||||||||| || ||||||||||| || ||||| Sbjct: 435 gagcatccaacaaccttccttgcattgccctcagaatcaatcttgcaaagaccagcccat 376 Query: 320 tctccgagagttttagcacttggcacagtaaccaggtgaacattgtgctcagcgcatagt 379 || ||||| ||||| |||||||| ||||||| || | | |||| |||||||| || Sbjct: 375 tcgccgagtgttttggcacttggaacagtaagcaatttgatgctgtggtcagcgcaaaga 316 Query: 380 gccttaacaagcttcacgtaatcaggctggtcacaatcctcagccagcacacaaagctga 439 || ||||||||||| || |||||||| |||| ||||| |||||||| ||||| |||||| Sbjct: 315 gctttaacaagcttgacataatcaggttggttgcaatcttcagccaggacacagagctga 256 Query: 440 gcagcatgcttctcaat 456 ||| | |||||||||| Sbjct: 255 gcattacgcttctcaat 239
>ref|NM_128766.4| Arabidopsis thaliana structural constituent of ribosome AT2G32060 transcript variant AT2G32060.1 mRNA, complete cds Length = 759 Score = 105 bits (53), Expect = 2e-19 Identities = 161/197 (81%) Strand = Plus / Minus Query: 260 gagcagcctacaaccttccttgccttgccctcagtgtcgatcttgcaaagccctgcccac 319 ||||| || |||||||||||||| |||||||||| || ||||||||||| || ||||| Sbjct: 473 gagcatccaacaaccttccttgcattgccctcagaatcaatcttgcaaagaccagcccat 414 Query: 320 tctccgagagttttagcacttggcacagtaaccaggtgaacattgtgctcagcgcatagt 379 || ||||| ||||| |||||||| ||||||| || | | |||| |||||||| || Sbjct: 413 tcgccgagtgttttggcacttggaacagtaagcaatttgatgctgtggtcagcgcaaaga 354 Query: 380 gccttaacaagcttcacgtaatcaggctggtcacaatcctcagccagcacacaaagctga 439 || ||||||||||| || |||||||| |||| ||||| |||||||| ||||| |||||| Sbjct: 353 gctttaacaagcttgacataatcaggttggttgcaatcttcagccaggacacagagctga 294 Query: 440 gcagcatgcttctcaat 456 ||| | |||||||||| Sbjct: 293 gcattacgcttctcaat 277
>ref|NM_179849.2| Arabidopsis thaliana structural constituent of ribosome AT2G32060 transcript variant AT2G32060.2 mRNA, complete cds Length = 723 Score = 105 bits (53), Expect = 2e-19 Identities = 161/197 (81%) Strand = Plus / Minus Query: 260 gagcagcctacaaccttccttgccttgccctcagtgtcgatcttgcaaagccctgcccac 319 ||||| || |||||||||||||| |||||||||| || ||||||||||| || ||||| Sbjct: 437 gagcatccaacaaccttccttgcattgccctcagaatcaatcttgcaaagaccagcccat 378 Query: 320 tctccgagagttttagcacttggcacagtaaccaggtgaacattgtgctcagcgcatagt 379 || ||||| ||||| |||||||| ||||||| || | | |||| |||||||| || Sbjct: 377 tcgccgagtgttttggcacttggaacagtaagcaatttgatgctgtggtcagcgcaaaga 318 Query: 380 gccttaacaagcttcacgtaatcaggctggtcacaatcctcagccagcacacaaagctga 439 || ||||||||||| || |||||||| |||| ||||| |||||||| ||||| |||||| Sbjct: 317 gctttaacaagcttgacataatcaggttggttgcaatcttcagccaggacacagagctga 258 Query: 440 gcagcatgcttctcaat 456 ||| | |||||||||| Sbjct: 257 gcattacgcttctcaat 241
>gb|AY133636.1| Arabidopsis thaliana At2g32060/F22D22.19 mRNA, complete cds Length = 435 Score = 105 bits (53), Expect = 2e-19 Identities = 161/197 (81%) Strand = Plus / Minus Query: 260 gagcagcctacaaccttccttgccttgccctcagtgtcgatcttgcaaagccctgcccac 319 ||||| || |||||||||||||| |||||||||| || ||||||||||| || ||||| Sbjct: 359 gagcatccaacaaccttccttgcattgccctcagaatcaatcttgcaaagaccagcccat 300 Query: 320 tctccgagagttttagcacttggcacagtaaccaggtgaacattgtgctcagcgcatagt 379 || ||||| ||||| |||||||| ||||||| || | | |||| |||||||| || Sbjct: 299 tcgccgagtgttttggcacttggaacagtaagcaatttgatgctgtggtcagcgcaaaga 240 Query: 380 gccttaacaagcttcacgtaatcaggctggtcacaatcctcagccagcacacaaagctga 439 || ||||||||||| || |||||||| |||| ||||| |||||||| ||||| |||||| Sbjct: 239 gctttaacaagcttgacataatcaggttggttgcaatcttcagccaggacacagagctga 180 Query: 440 gcagcatgcttctcaat 456 ||| | |||||||||| Sbjct: 179 gcattacgcttctcaat 163
>gb|AY050324.1| Arabidopsis thaliana At2g32060/F22D22.19 mRNA, complete cds Length = 696 Score = 105 bits (53), Expect = 2e-19 Identities = 161/197 (81%) Strand = Plus / Minus Query: 260 gagcagcctacaaccttccttgccttgccctcagtgtcgatcttgcaaagccctgcccac 319 ||||| || |||||||||||||| |||||||||| || ||||||||||| || ||||| Sbjct: 437 gagcatccaacaaccttccttgcattgccctcagaatcaatcttgcaaagaccagcccat 378 Query: 320 tctccgagagttttagcacttggcacagtaaccaggtgaacattgtgctcagcgcatagt 379 || ||||| ||||| |||||||| ||||||| || | | |||| |||||||| || Sbjct: 377 tcgccgagtgttttggcacttggaacagtaagcaatttgatgctgtggtcagcgcaaaga 318 Query: 380 gccttaacaagcttcacgtaatcaggctggtcacaatcctcagccagcacacaaagctga 439 || ||||||||||| || |||||||| |||| ||||| |||||||| ||||| |||||| Sbjct: 317 gctttaacaagcttgacataatcaggttggttgcaatcttcagccaggacacagagctga 258 Query: 440 gcagcatgcttctcaat 456 ||| | |||||||||| Sbjct: 257 gcattacgcttctcaat 241
>gb|AY085161.1| Arabidopsis thaliana clone 13453 mRNA, complete sequence Length = 732 Score = 105 bits (53), Expect = 2e-19 Identities = 161/197 (81%) Strand = Plus / Minus Query: 260 gagcagcctacaaccttccttgccttgccctcagtgtcgatcttgcaaagccctgcccac 319 ||||| || |||||||||||||| |||||||||| || ||||||||||| || ||||| Sbjct: 473 gagcatccaacaaccttccttgcattgccctcagaatcaatcttgcaaagaccagcccat 414 Query: 320 tctccgagagttttagcacttggcacagtaaccaggtgaacattgtgctcagcgcatagt 379 || ||||| ||||| |||||||| ||||||| || | | |||| |||||||| || Sbjct: 413 tcgccgagtgttttggcacttggaacagtaagcaatttgatgctgtggtcagcgcaaaga 354 Query: 380 gccttaacaagcttcacgtaatcaggctggtcacaatcctcagccagcacacaaagctga 439 || ||||||||||| || |||||||| |||| ||||| |||||||| ||||| |||||| Sbjct: 353 gctttaacaagcttgacataatcaggttggttgcaatcttcagccaggacacagagctga 294 Query: 440 gcagcatgcttctcaat 456 ||| | |||||||||| Sbjct: 293 gcattacgcttctcaat 277
>gb|AC122164.6| Medicago truncatula clone mth2-24h4, complete sequence Length = 112428 Score = 77.8 bits (39), Expect = 4e-11 Identities = 54/59 (91%) Strand = Plus / Plus Query: 395 acgtaatcaggctggtcacaatcctcagccagcacacaaagctgagcagcatgcttctc 453 ||||||||||| ||||||||||||||||| || ||||| ||||| |||||||||||||| Sbjct: 54438 acgtaatcaggttggtcacaatcctcagcaagaacacagagctgtgcagcatgcttctc 54496
>emb|CT573502.2| Medicago truncatula chromosome 5 clone mte1-69f21, COMPLETE SEQUENCE Length = 89977 Score = 77.8 bits (39), Expect = 4e-11 Identities = 84/99 (84%) Strand = Plus / Plus Query: 358 aacattgtgctcagcgcatagtgccttaacaagcttcacgtaatcaggctggtcacaatc 417 |||||||||||| ||||| || || || || | || || |||||||| ||||||||||| Sbjct: 44152 aacattgtgctctgcgcagagggctttcaccaatttgacataatcaggttggtcacaatc 44211 Query: 418 ctcagccagcacacaaagctgagcagcatgcttctcaat 456 ||||| || ||||||||||| ||||||||||||||||| Sbjct: 44212 ttcagctagaacacaaagctgtgcagcatgcttctcaat 44250
>gb|AC006223.4| Arabidopsis thaliana chromosome 2 clone F22D22 map TEn5, complete sequence Length = 103194 Score = 67.9 bits (34), Expect = 4e-08 Identities = 79/94 (84%) Strand = Plus / Minus Query: 363 tgtgctcagcgcatagtgccttaacaagcttcacgtaatcaggctggtcacaatcctcag 422 |||| |||||||| || || ||||||||||| || |||||||| |||| ||||| |||| Sbjct: 49795 tgtggtcagcgcaaagagctttaacaagcttgacataatcaggttggttgcaatcttcag 49736 Query: 423 ccagcacacaaagctgagcagcatgcttctcaat 456 |||| ||||| ||||||||| | |||||||||| Sbjct: 49735 ccaggacacagagctgagcattacgcttctcaat 49702 Score = 54.0 bits (27), Expect = 6e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 260 gagcagcctacaaccttccttgccttgccctcagtgtcgatcttgcaaagc 310 ||||| || |||||||||||||| |||||||||| || |||||||||||| Sbjct: 49986 gagcatccaacaaccttccttgcattgccctcagaatcaatcttgcaaagc 49936
>gb|AF154659.1| Nicotiana tabacum clone PR50 mRNA sequence Length = 708 Score = 67.9 bits (34), Expect = 4e-08 Identities = 82/98 (83%) Strand = Plus / Plus Query: 359 acattgtgctcagcgcatagtgccttaacaagcttcacgtaatcaggctggtcacaatcc 418 |||||||| ||||| || || || || || ||||| || || || |||||||| || ||| Sbjct: 382 acattgtgatcagcacaaagagctttgaccagcttgacatagtctggctggtcgcagtcc 441 Query: 419 tcagccagcacacaaagctgagcagcatgcttctcaat 456 || || |||||||||||||| ||||||||||||||||| Sbjct: 442 tctgctagcacacaaagctgcgcagcatgcttctcaat 479
>gb|AC153003.14| Medicago truncatula clone mth2-96o5, complete sequence Length = 93881 Score = 65.9 bits (33), Expect = 1e-07 Identities = 69/81 (85%) Strand = Plus / Plus Query: 358 aacattgtgctcagcgcatagtgccttaacaagcttcacgtaatcaggctggtcacaatc 417 ||||||||||||||| || || ||||| ||||| || || || ||||||||||||||||| Sbjct: 18393 aacattgtgctcagcacaaagagccttgacaagtttaacatagtcaggctggtcacaatc 18452 Query: 418 ctcagccagcacacaaagctg 438 || || || ||||||||||| Sbjct: 18453 ttctgcaagaacacaaagctg 18473
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 50.1 bits (25), Expect = 0.009 Identities = 34/37 (91%) Strand = Plus / Minus Query: 466 agcctcacggagccccttcacaaggccatcatgagca 502 |||||||||||| ||||| |||||| ||||||||||| Sbjct: 32275027 agcctcacggagacccttgacaaggtcatcatgagca 32274991
>gb|AC133340.4| Oryza sativa chromosome 3 BAC clone OSJNBb0024J17, complete sequence Length = 102751 Score = 50.1 bits (25), Expect = 0.009 Identities = 34/37 (91%) Strand = Plus / Minus Query: 466 agcctcacggagccccttcacaaggccatcatgagca 502 |||||||||||| ||||| |||||| ||||||||||| Sbjct: 8796 agcctcacggagacccttgacaaggtcatcatgagca 8760
>gb|AC091123.4| Oryza sativa chromosome 3 BAC OSJNBb0093E13 genomic sequence, complete sequence Length = 129778 Score = 50.1 bits (25), Expect = 0.009 Identities = 34/37 (91%) Strand = Plus / Minus Query: 466 agcctcacggagccccttcacaaggccatcatgagca 502 |||||||||||| ||||| |||||| ||||||||||| Sbjct: 126701 agcctcacggagacccttgacaaggtcatcatgagca 126665
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 50.1 bits (25), Expect = 0.009 Identities = 34/37 (91%) Strand = Plus / Minus Query: 466 agcctcacggagccccttcacaaggccatcatgagca 502 |||||||||||| ||||| |||||| ||||||||||| Sbjct: 32365539 agcctcacggagacccttgacaaggtcatcatgagca 32365503
>dbj|AB180426.1| Plutella xylostella mRNA for Ribosomal protein S21, complete cds Length = 494 Score = 48.1 bits (24), Expect = 0.035 Identities = 57/68 (83%) Strand = Plus / Minus Query: 260 gagcagcctacaaccttccttgccttgccctcagtgtcgatcttgcaaagccctgcccac 319 ||||| || |||| |||||| |||||||| || ||||||||||||| || || |||||| Sbjct: 361 gagcatccaacaatcttcctagccttgccgtccttgtcgatcttgcacagaccggcccac 302 Query: 320 tctccgag 327 || ||||| Sbjct: 301 tcaccgag 294
>ref|NM_101461.3| Arabidopsis thaliana structural constituent of ribosome AT1G15930 transcript variant AT1G15930.1 mRNA, complete cds Length = 861 Score = 46.1 bits (23), Expect = 0.14 Identities = 56/67 (83%) Strand = Plus / Minus Query: 240 agtccttgacaacaatgcaagagcagcctacaaccttccttgccttgccctcagtgtcga 299 ||||||||||||||| || ||||| || ||||||||||| || || ||||||| || | Sbjct: 562 agtccttgacaacaagacatgagcatccaacaaccttcctggcattaccctcagaatcaa 503 Query: 300 tcttgca 306 ||||||| Sbjct: 502 tcttgca 496
>ref|NM_179342.1| Arabidopsis thaliana structural constituent of ribosome AT1G15930 transcript variant AT1G15930.2 mRNA, complete cds Length = 758 Score = 46.1 bits (23), Expect = 0.14 Identities = 56/67 (83%) Strand = Plus / Minus Query: 240 agtccttgacaacaatgcaagagcagcctacaaccttccttgccttgccctcagtgtcga 299 ||||||||||||||| || ||||| || ||||||||||| || || ||||||| || | Sbjct: 459 agtccttgacaacaagacatgagcatccaacaaccttcctggcattaccctcagaatcaa 400 Query: 300 tcttgca 306 ||||||| Sbjct: 399 tcttgca 393
>gb|AY099330.1| Periplaneta americana ribosomal protein S12 mRNA, partial cds Length = 512 Score = 46.1 bits (23), Expect = 0.14 Identities = 50/59 (84%) Strand = Plus / Minus Query: 230 tcttcaccatagtccttgacaacaatgcaagagcagcctacaaccttccttgccttgcc 288 ||||||||||| ||||| ||||||| || ||||| || ||||| ||||| |||||||| Sbjct: 365 tcttcaccataatccttaacaacaacacaggagcaaccgacaactttcctagccttgcc 307
>gb|AY054130.1| Arabidopsis thaliana At1g15930/T24D18_3 mRNA, complete cds Length = 435 Score = 46.1 bits (23), Expect = 0.14 Identities = 56/67 (83%) Strand = Plus / Minus Query: 240 agtccttgacaacaatgcaagagcagcctacaaccttccttgccttgccctcagtgtcga 299 ||||||||||||||| || ||||| || ||||||||||| || || ||||||| || | Sbjct: 379 agtccttgacaacaagacatgagcatccaacaaccttcctggcattaccctcagaatcaa 320 Query: 300 tcttgca 306 ||||||| Sbjct: 319 tcttgca 313
>gb|AF380626.1|AF380626 Arabidopsis thaliana At1g15930/T24D18_3 mRNA, complete cds Length = 692 Score = 46.1 bits (23), Expect = 0.14 Identities = 56/67 (83%) Strand = Plus / Minus Query: 240 agtccttgacaacaatgcaagagcagcctacaaccttccttgccttgccctcagtgtcga 299 ||||||||||||||| || ||||| || ||||||||||| || || ||||||| || | Sbjct: 459 agtccttgacaacaagacatgagcatccaacaaccttcctggcattaccctcagaatcaa 400 Query: 300 tcttgca 306 ||||||| Sbjct: 399 tcttgca 393
>emb|BX813855.1|CNS0AEMV Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB43ZB03 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 635 Score = 46.1 bits (23), Expect = 0.14 Identities = 56/67 (83%) Strand = Plus / Minus Query: 240 agtccttgacaacaatgcaagagcagcctacaaccttccttgccttgccctcagtgtcga 299 ||||||||||||||| || ||||| || ||||||||||| || || ||||||| || | Sbjct: 438 agtccttgacaacaagacatgagcatccaacaaccttcctggcattaccctcagaatcaa 379 Query: 300 tcttgca 306 ||||||| Sbjct: 378 tcttgca 372
>emb|BX815848.1|CNS0ABMM Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH12ZC08 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 658 Score = 46.1 bits (23), Expect = 0.14 Identities = 56/67 (83%) Strand = Plus / Minus Query: 240 agtccttgacaacaatgcaagagcagcctacaaccttccttgccttgccctcagtgtcga 299 ||||||||||||||| || ||||| || ||||||||||| || || ||||||| || | Sbjct: 435 agtccttgacaacaagacatgagcatccaacaaccttcctggcattaccctcagaatcaa 376 Query: 300 tcttgca 306 ||||||| Sbjct: 375 tcttgca 369
>emb|BX818653.1|CNS0AB7K Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL90ZB11 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 687 Score = 46.1 bits (23), Expect = 0.14 Identities = 56/67 (83%) Strand = Plus / Minus Query: 240 agtccttgacaacaatgcaagagcagcctacaaccttccttgccttgccctcagtgtcga 299 ||||||||||||||| || ||||| || ||||||||||| || || ||||||| || | Sbjct: 424 agtccttgacaacaagacatgagcatccaacaaccttcctggcattaccctcagaatcaa 365 Query: 300 tcttgca 306 ||||||| Sbjct: 364 tcttgca 358
>gb|AY084613.1| Arabidopsis thaliana clone 11328 mRNA, complete sequence Length = 782 Score = 46.1 bits (23), Expect = 0.14 Identities = 56/67 (83%) Strand = Plus / Minus Query: 240 agtccttgacaacaatgcaagagcagcctacaaccttccttgccttgccctcagtgtcga 299 ||||||||||||||| || ||||| || ||||||||||| || || ||||||| || | Sbjct: 562 agtccttgacaacaagacatgagcatccaacaaccttcctggcattaccctcagaatcaa 503 Query: 300 tcttgca 306 ||||||| Sbjct: 502 tcttgca 496
>gb|BT012865.1| Lycopersicon esculentum clone 113957F, mRNA sequence Length = 749 Score = 44.1 bits (22), Expect = 0.55 Identities = 43/50 (86%) Strand = Plus / Minus Query: 407 tggtcacaatcctcagccagcacacaaagctgagcagcatgcttctcaat 456 |||||||| ||||| |||| || ||||| || ||||||||||||||||| Sbjct: 272 tggtcacagtcctctgccaaaacgcaaagttgggcagcatgcttctcaat 223
>ref|XM_988289.1| PREDICTED: Mus musculus protein tyrosine phosphatase, receptor type Z, polypeptide 1, transcript variant 3 (Ptprz1), mRNA Length = 6857 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Minus Query: 125 ataattaaaccaaggaccaaaa 146 |||||||||||||||||||||| Sbjct: 5131 ataattaaaccaaggaccaaaa 5110
>ref|XM_620293.3| PREDICTED: Mus musculus protein tyrosine phosphatase, receptor type Z, polypeptide 1, transcript variant 1 (Ptprz1), mRNA Length = 7098 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Minus Query: 125 ataattaaaccaaggaccaaaa 146 |||||||||||||||||||||| Sbjct: 5372 ataattaaaccaaggaccaaaa 5351
>emb|AJ133130.1|MMU133130 Mus musculus mRNA for DSD-1-proteoglycan Length = 6887 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Minus Query: 125 ataattaaaccaaggaccaaaa 146 |||||||||||||||||||||| Sbjct: 5152 ataattaaaccaaggaccaaaa 5131
>dbj|AK141126.1| Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length enriched library, clone:C230061O04 product:protein tyrosine phosphatase, receptor type Z, polypeptide 1, full insert sequence Length = 3428 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Minus Query: 125 ataattaaaccaaggaccaaaa 146 |||||||||||||||||||||| Sbjct: 2921 ataattaaaccaaggaccaaaa 2900
>gb|AC133599.3| Mus musculus BAC clone RP24-390N10 from 6, complete sequence Length = 185830 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Minus Query: 125 ataattaaaccaaggaccaaaa 146 |||||||||||||||||||||| Sbjct: 82014 ataattaaaccaaggaccaaaa 81993
>gb|AY769327.1| Bombyx mori ribosomal protein S12 (RpS12) mRNA, complete cds Length = 534 Score = 42.1 bits (21), Expect = 2.2 Identities = 54/65 (83%) Strand = Plus / Minus Query: 260 gagcagcctacaaccttccttgccttgccctcagtgtcgatcttgcaaagccctgcccac 319 |||||||| |||| |||||||||||||| || |||| |||||||| || || ||||| Sbjct: 371 gagcagccgacaattttccttgccttgccatccttgtcaatcttgcagagaccagcccat 312 Query: 320 tctcc 324 ||||| Sbjct: 311 tctcc 307
>gb|AC108946.4| Mus musculus BAC clone RP23-134N13 from 3, complete sequence Length = 183446 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 126 taattaaaccaaggaccaaaa 146 ||||||||||||||||||||| Sbjct: 128129 taattaaaccaaggaccaaaa 128149
>gb|AC107367.13| Mus musculus chromosome 3, clone RP23-331D18, complete sequence Length = 204398 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 114 agaacaaaagcataattaaaccaag 138 ||||||||||||||||| ||||||| Sbjct: 122233 agaacaaaagcataatttaaccaag 122257
>gb|AF125446.1| Caenorhabditis elegans cosmid R05C11, complete sequence Length = 45770 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 228 attcttcaccatagtccttga 248 ||||||||||||||||||||| Sbjct: 42339 attcttcaccatagtccttga 42319
>gb|DQ066262.1| Ixodes scapularis isolate ISN-L-128 ribosomal protein S12 mRNA, complete cds Length = 399 Score = 42.1 bits (21), Expect = 2.2 Identities = 36/41 (87%) Strand = Plus / Minus Query: 281 gccttgccctcagtgtcgatcttgcaaagccctgcccactc 321 ||||||||||| ||||||||||||| || || |||||||| Sbjct: 296 gccttgccctctttgtcgatcttgcacaggcccgcccactc 256
>ref|NM_067760.2| Caenorhabditis elegans R05C11.3 (ATPase) mRNA, complete cds Length = 4001 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 228 attcttcaccatagtccttga 248 ||||||||||||||||||||| Sbjct: 2693 attcttcaccatagtccttga 2673
>gb|AC116337.2| Homo sapiens chromosome 5 clone CTD-2503O16, complete sequence Length = 122363 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 105 ataagcccaagaacaaaagca 125 ||||||||||||||||||||| Sbjct: 59224 ataagcccaagaacaaaagca 59204
>gb|AC121813.3| Mus musculus BAC clone RP23-457E5 from 9, complete sequence Length = 178176 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 332 ttagcacttggcacagtaacc 352 ||||||||||||||||||||| Sbjct: 102555 ttagcacttggcacagtaacc 102535
>emb|AJ010708.1|CEL010708 Caenorhabditis elegans mRNA for calcium ATPase, isoform 2 Length = 4023 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 228 attcttcaccatagtccttga 248 ||||||||||||||||||||| Sbjct: 2715 attcttcaccatagtccttga 2695
>gb|AC021573.10| Homo sapiens chromosome 11, clone RP11-411D10, complete sequence Length = 144656 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 180 tcaactattgagacttgacat 200 ||||||||||||||||||||| Sbjct: 35114 tcaactattgagacttgacat 35134
>gb|AC157930.7| Mus musculus chromosome 5, clone RP24-151E22, complete sequence Length = 146346 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 585 caacaactggtgctggggct 604 |||||||||||||||||||| Sbjct: 33506 caacaactggtgctggggct 33487
>gb|AC121533.6| Mus musculus chromosome 9, clone RP24-555P22, complete sequence Length = 175009 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 115 gaacaaaagcataattaaaccaag 138 |||||||||||||| ||||||||| Sbjct: 129371 gaacaaaagcataaataaaccaag 129394
>ref|XM_752372.1| Ustilago maydis 521 hypothetical protein (UM01318.1) partial mRNA Length = 438 Score = 40.1 bits (20), Expect = 8.6 Identities = 38/44 (86%) Strand = Plus / Minus Query: 233 tcaccatagtccttgacaacaatgcaagagcagcctacaacctt 276 ||||| ||||||||||| || | |||||||||||| || ||||| Sbjct: 389 tcaccgtagtccttgacgacgacgcaagagcagccgaccacctt 346
>gb|AC132684.3| Mus musculus BAC clone RP23-277L20 from 9, complete sequence Length = 182976 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 115 gaacaaaagcataattaaaccaag 138 |||||||||||||| ||||||||| Sbjct: 63979 gaacaaaagcataaataaaccaag 63956
>emb|Z95330.11|HS73E16 Human DNA sequence from clone RP1-73E16 on chromosome 20q12-13.3 Contains ESTs, STSs and GSSs, complete sequence Length = 43922 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 250 aacaatgcaagagcagccta 269 |||||||||||||||||||| Sbjct: 23691 aacaatgcaagagcagccta 23710
>emb|AL359382.23| Human DNA sequence from clone RP11-631F7 on chromosome 6 Contains the 3' part of a novel gene, a novel gene and a CpG island, complete sequence Length = 183935 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 aaacaaaggctcaaatgtcc 59 |||||||||||||||||||| Sbjct: 109702 aaacaaaggctcaaatgtcc 109721
>emb|AL596090.11| Mouse DNA sequence from clone RP23-135F6 on chromosome 11 Contains the 5' end of the gene for the likely ortholog of H. sapiens target of myb1-like 2 (chicken) (TOM1L2) (A730055F12Rik), a glyceraldehyde-3-phosphate dehydrogenase (Gapd) pseudogene, the gene for a novel Leucine Rich Repeat domain-containing protein (4930449E07Rik), the Atpaf2 gene for ATP synthase mitochondrial F1 complex assembly factor 2, the gene for a novel protein (4933439F18Rik), an acid phosphatase 1 soluble (Acp1) pseudogene, a ribosomal protein S4, X-linked (Rps4x) pseudogene, the Drg2 gene for developmentally regulated GTP binding protein 2, the 5' end of the Myo15 gene for myosin XV and four CpG islands, complete sequence Length = 207440 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 453 caatggacttggcagcctcacgga 476 ||||||||||| |||||||||||| Sbjct: 5054 caatggacttgtcagcctcacgga 5077
>dbj|BA000032.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromosome 2, complete sequence Length = 1877212 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 tgtccaaatcaacaatatct 74 |||||||||||||||||||| Sbjct: 718618 tgtccaaatcaacaatatct 718599
>emb|BX537263.17| Zebrafish DNA sequence from clone DKEY-208G1 in linkage group 14, complete sequence Length = 166940 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 accaaaatgcccaacacaag 159 |||||||||||||||||||| Sbjct: 148328 accaaaatgcccaacacaag 148309
>gb|AC025062.6| Homo sapiens chromosome 8, clone RP11-685B14, complete sequence Length = 190459 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 aacaatgcaagagcagccta 269 |||||||||||||||||||| Sbjct: 166855 aacaatgcaagagcagccta 166836
>gb|AC102477.18| Mus musculus chromosome 5, clone RP24-405C17, complete sequence Length = 179495 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 585 caacaactggtgctggggct 604 |||||||||||||||||||| Sbjct: 86519 caacaactggtgctggggct 86538
>gb|AY245452.1| Dermacentor variabilis 40S ribosomal protein S12 mRNA, complete cds Length = 607 Score = 40.1 bits (20), Expect = 8.6 Identities = 50/60 (83%) Strand = Plus / Minus Query: 262 gcagcctacaaccttccttgccttgccctcagtgtcgatcttgcaaagccctgcccactc 321 |||||| || || ||||| |||||||| || ||||||||||||| || || |||||||| Sbjct: 384 gcagccgaccactttcctcgccttgccttccttgtcgatcttgcagaggccggcccactc 325
>gb|AC141273.2| Homo sapiens chromosome 16 clone RP11-143N13, complete sequence Length = 101561 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 250 aacaatgcaagagcagccta 269 |||||||||||||||||||| Sbjct: 85571 aacaatgcaagagcagccta 85590
>gb|AC141053.2| Homo sapiens chromosome 16 clone CTD-3076M17, complete sequence Length = 98702 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 250 aacaatgcaagagcagccta 269 |||||||||||||||||||| Sbjct: 3492 aacaatgcaagagcagccta 3511
>gb|AC120051.5| Homo sapiens chromosome 8, clone RP11-809L8, complete sequence Length = 200827 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 250 aacaatgcaagagcagccta 269 |||||||||||||||||||| Sbjct: 170727 aacaatgcaagagcagccta 170746
>gb|AC096624.23| Mus musculus strain C57BL/6J chromosome 11 clone rp23-326m22, complete sequence Length = 227682 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 453 caatggacttggcagcctcacgga 476 ||||||||||| |||||||||||| Sbjct: 10580 caatggacttgtcagcctcacgga 10557
>emb|AJ011717.1|CPA011717 Cyanophora paradoxa mRNA for 40s ribosomal protein S12 Length = 560 Score = 40.1 bits (20), Expect = 8.6 Identities = 38/44 (86%) Strand = Plus / Minus Query: 284 ttgccctcagtgtcgatcttgcaaagccctgcccactctccgag 327 |||||||| |||||||||||||||| || ||||||| ||||| Sbjct: 353 ttgccctccttgtcgatcttgcaaaggccgacccactcgccgag 310
>dbj|AK111197.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-178-D10, full insert sequence Length = 2992 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 tttacgctaaaggcagcagc 31 |||||||||||||||||||| Sbjct: 953 tttacgctaaaggcagcagc 972
>gb|AC010924.2|T24D18 Arabidopsis thaliana chromosome 1 BAC T24D18 sequence, complete sequence Length = 80442 Score = 40.1 bits (20), Expect = 8.6 Identities = 53/64 (82%) Strand = Plus / Minus Query: 243 ccttgacaacaatgcaagagcagcctacaaccttccttgccttgccctcagtgtcgatct 302 |||||||||||| || ||||| || ||||||||||| || || ||||||| || |||| Sbjct: 7837 ccttgacaacaagacatgagcatccaacaaccttcctggcattaccctcagaatcaatct 7778 Query: 303 tgca 306 |||| Sbjct: 7777 tgca 7774 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,495,011 Number of Sequences: 3902068 Number of extensions: 5495011 Number of successful extensions: 99432 Number of sequences better than 10.0: 78 Number of HSP's better than 10.0 without gapping: 79 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 99157 Number of HSP's gapped (non-prelim): 274 length of query: 629 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 606 effective length of database: 17,143,297,704 effective search space: 10388838408624 effective search space used: 10388838408624 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
