Clone Name | rbasd16c16 |
---|---|
Clone Library Name | barley_pub |
>PPA5_MOUSE (Q05117) Tartrate-resistant acid phosphatase type 5 precursor (EC| 3.1.3.2) (TR-AP) (Tartrate-resistant acid ATPase) (TrATPase) (Acid phosphatase 5, tartrate resistant) Length = 327 Score = 47.4 bits (111), Expect = 2e-05 Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 7/114 (6%) Frame = -2 Query: 495 GHHTMRSVSDHGDTEEXXXXXXXXLKVNGIDFYINGHDHCLEHISSRNSPIQYFTSGGGS 316 GH+ + S+++HG T L G+ Y+ GHDH L+++ N + Y SG G+ Sbjct: 206 GHYPIWSIAEHGPTRCLVKNLRPLLATYGVTAYLCGHDHNLQYLQDENG-VGYVLSGAGN 264 Query: 315 ---KAWRGVYQPNDDKLQFFYDGQ----GFMSLQLNKDQADFIFYDVSGKVLYE 175 + R + + L+F Y + GF ++++ + I+ + SGK L++ Sbjct: 265 FMDPSVRHQRKVPNGYLRFHYGSEDSLGGFTHVEISPKEMTIIYVEASGKSLFK 318
>PPA5_RAT (P29288) Tartrate-resistant acid phosphatase type 5 precursor (EC| 3.1.3.2) (TR-AP) (Tartrate-resistant acid ATPase) (TrATPase) (Acid phosphatase 5, tartrate resistant) Length = 327 Score = 45.4 bits (106), Expect = 8e-05 Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 7/114 (6%) Frame = -2 Query: 495 GHHTMRSVSDHGDTEEXXXXXXXXLKVNGIDFYINGHDHCLEHISSRNSPIQYFTSGGGS 316 GH+ + S+++HG T L G+ Y+ GHDH L+++ N + Y SG G+ Sbjct: 206 GHYPIWSIAEHGPTRCLVKNLRPLLAAYGVTAYLCGHDHNLQYLQDENG-VGYVLSGAGN 264 Query: 315 ---KAWRGVYQPNDDKLQFFYDGQ----GFMSLQLNKDQADFIFYDVSGKVLYE 175 + R + + L+F Y + GF +++ + + + SGK L++ Sbjct: 265 FMDPSVRHQRKVPNGYLRFHYGSEDSLGGFTYVEIGSKEMSITYVEASGKSLFK 318
>PPA5_HUMAN (P13686) Tartrate-resistant acid phosphatase type 5 precursor (EC| 3.1.3.2) (TR-AP) (Tartrate-resistant acid ATPase) (TrATPase) (Acid phosphatase 5, tartrate resistant) Length = 325 Score = 44.3 bits (103), Expect = 2e-04 Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 7/114 (6%) Frame = -2 Query: 495 GHHTMRSVSDHGDTEEXXXXXXXXLKVNGIDFYINGHDHCLEHISSRNSPIQYFTSGGGS 316 GH+ + S+++HG T L G+ Y+ GHDH L+++ N + Y SG G+ Sbjct: 204 GHYPVWSIAEHGPTHCLVKQLRPLLATYGVTAYLCGHDHNLQYLQDENG-VGYVLSGAGN 262 Query: 315 ---KAWRGVYQPNDDKLQFFYDGQ----GFMSLQLNKDQADFIFYDVSGKVLYE 175 + R + + L+F Y + GF ++++ + + + SGK L++ Sbjct: 263 FMDPSKRHQRKVPNGYLRFHYGTEDSLGGFAYVEISSKEMTVTYIEASGKSLFK 316
>PPA5_RABIT (O97860) Tartrate-resistant acid phosphatase type 5 precursor (EC| 3.1.3.2) (TR-AP) (Tartrate-resistant acid ATPase) (TrATPase) (Acid phosphatase 5, tartrate resistant) Length = 325 Score = 43.1 bits (100), Expect = 4e-04 Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 10/117 (8%) Frame = -2 Query: 495 GHHTMRSVSDHGDTEEXXXXXXXXLKVNGIDFYINGHDHCLEHISSRNSPIQYFTSGGG- 319 GH+ + S+++HG T L G+ Y+ GHDH L+++ N + Y SG G Sbjct: 204 GHYPVWSIAEHGPTHCLVKKLQPLLVKYGVTAYLCGHDHNLQYLQDENG-VGYVLSGAGN 262 Query: 318 -----SKAWRGVYQPNDDKLQFFYDGQ----GFMSLQLNKDQADFIFYDVSGKVLYE 175 ++ R V PN L+F Y + GF L++ + + + SGK L++ Sbjct: 263 FMDPSTQHQRSV--PN-GYLRFHYGAENSLGGFAYLEITPKEMTVTYMEASGKSLFK 316
>PPA5_PIG (P09889) Tartrate-resistant acid phosphatase type 5 precursor (EC| 3.1.3.2) (TR-AP) (Tartrate-resistant acid ATPase) (TrATPase) (Acid phosphatase 5, tartrate resistant) (Uteroferrin) (UF) Length = 340 Score = 39.3 bits (90), Expect = 0.006 Identities = 25/114 (21%), Positives = 55/114 (48%), Gaps = 7/114 (6%) Frame = -2 Query: 495 GHHTMRSVSDHGDTEEXXXXXXXXLKVNGIDFYINGHDHCLEHISSRNSPIQYFTSGGGS 316 GH+ + S+++HG T L + + Y+ GHDH L+++ N + + SG G+ Sbjct: 212 GHYPVWSIAEHGPTHCLVKQLLPLLTTHKVTAYLCGHDHNLQYLQDENG-LGFVLSGAGN 270 Query: 315 ---KAWRGVYQPNDDKLQFFYDGQ----GFMSLQLNKDQADFIFYDVSGKVLYE 175 + + + + + L+F + + GF +++ + + + SGK L++ Sbjct: 271 FMDPSKKHLRKVPNGYLRFHFGAENSLGGFAYVEITPKEMSVTYIEASGKSLFK 324
>AGO1_SCHPO (O74957) Cell cycle control protein ago1 (RNA interference pathway| protein ago1) Length = 834 Score = 31.2 bits (69), Expect = 1.6 Identities = 18/53 (33%), Positives = 27/53 (50%) Frame = -2 Query: 327 GGGSKAWRGVYQPNDDKLQFFYDGQGFMSLQLNKDQADFIFYDVSGKVLYEWT 169 GGG +AW+G YQ QGFMS+ ++ + F D ++L E+T Sbjct: 174 GGGVEAWKGFYQS-------IRPNQGFMSVNVDISSSAFWRNDSLLQILMEYT 219
>RPOC_PSEF5 (Q4K527) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1399 Score = 30.0 bits (66), Expect = 3.6 Identities = 16/45 (35%), Positives = 27/45 (60%) Frame = +1 Query: 319 TASTSEVLDWTVSAANVFQAVVMPIDVEVDAVNLEDRKKQLQELL 453 + S + ++D TV A +FQ V+P + D VNL +KK + +L+ Sbjct: 563 SVSATRIVDTTVGRALLFQ--VVPKGLSFDVVNLPMKKKAISKLI 605
>ATP8_MYXGL (O63913) ATP synthase protein 8 (EC 3.6.3.14) (ATPase subunit 8)| (A6L) Length = 54 Score = 29.3 bits (64), Expect = 6.1 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 5/43 (11%) Frame = +2 Query: 359 LLMCSRQWSC-PLM*KSM----PLTLRTGRSNCRSSSVSPWSL 472 LLM W C PLM S+ PLTL+T + SS +PW L Sbjct: 10 LLMALSLWVCFPLMMLSLSSFLPLTLKTSLPSTLKSSPNPWIL 52
>GTFD_STRMU (P49331) Glucosyltransferase-S precursor (EC 2.4.1.5) (GTF-S)| (Dextransucrase) (Sucrose 6-glucosyltransferase) Length = 1462 Score = 29.3 bits (64), Expect = 6.1 Identities = 18/92 (19%), Positives = 35/92 (38%), Gaps = 21/92 (22%) Frame = -2 Query: 402 FYINGHDHCLEHISSRNSPIQYFTSGG---------------------GSKAWRGVYQPN 286 +Y + + H + + N +QYF S G G++ G Y + Sbjct: 1128 YYFDNNGHMVYGLQHLNGEVQYFLSNGVQLRESFLENADGSKNYFGHLGNRYSNGYYSFD 1187 Query: 285 DDKLQFFYDGQGFMSLQLNKDQADFIFYDVSG 190 +D ++D G M++ L + ++D G Sbjct: 1188 NDSKWRYFDASGVMAVGLKTINGNTQYFDQDG 1219
>RPOC_PSEPF (Q3K5Y2) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1399 Score = 28.9 bits (63), Expect = 7.9 Identities = 15/45 (33%), Positives = 27/45 (60%) Frame = +1 Query: 319 TASTSEVLDWTVSAANVFQAVVMPIDVEVDAVNLEDRKKQLQELL 453 + + + ++D TV A +FQ V+P + D VNL +KK + +L+ Sbjct: 563 SVNNTRIVDTTVGRALLFQ--VVPKGLSFDVVNLPMKKKAISKLI 605 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 73,653,149 Number of Sequences: 219361 Number of extensions: 1543723 Number of successful extensions: 3463 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 3377 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3459 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3523384522 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)