ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd16c16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PPA5_MOUSE (Q05117) Tartrate-resistant acid phosphatase type 5 p... 47 2e-05
2PPA5_RAT (P29288) Tartrate-resistant acid phosphatase type 5 pre... 45 8e-05
3PPA5_HUMAN (P13686) Tartrate-resistant acid phosphatase type 5 p... 44 2e-04
4PPA5_RABIT (O97860) Tartrate-resistant acid phosphatase type 5 p... 43 4e-04
5PPA5_PIG (P09889) Tartrate-resistant acid phosphatase type 5 pre... 39 0.006
6AGO1_SCHPO (O74957) Cell cycle control protein ago1 (RNA interfe... 31 1.6
7RPOC_PSEF5 (Q4K527) DNA-directed RNA polymerase beta' chain (EC ... 30 3.6
8ATP8_MYXGL (O63913) ATP synthase protein 8 (EC 3.6.3.14) (ATPase... 29 6.1
9GTFD_STRMU (P49331) Glucosyltransferase-S precursor (EC 2.4.1.5)... 29 6.1
10RPOC_PSEPF (Q3K5Y2) DNA-directed RNA polymerase beta' chain (EC ... 29 7.9

>PPA5_MOUSE (Q05117) Tartrate-resistant acid phosphatase type 5 precursor (EC|
           3.1.3.2) (TR-AP) (Tartrate-resistant acid ATPase)
           (TrATPase) (Acid phosphatase 5, tartrate resistant)
          Length = 327

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 7/114 (6%)
 Frame = -2

Query: 495 GHHTMRSVSDHGDTEEXXXXXXXXLKVNGIDFYINGHDHCLEHISSRNSPIQYFTSGGGS 316
           GH+ + S+++HG T          L   G+  Y+ GHDH L+++   N  + Y  SG G+
Sbjct: 206 GHYPIWSIAEHGPTRCLVKNLRPLLATYGVTAYLCGHDHNLQYLQDENG-VGYVLSGAGN 264

Query: 315 ---KAWRGVYQPNDDKLQFFYDGQ----GFMSLQLNKDQADFIFYDVSGKVLYE 175
               + R   +  +  L+F Y  +    GF  ++++  +   I+ + SGK L++
Sbjct: 265 FMDPSVRHQRKVPNGYLRFHYGSEDSLGGFTHVEISPKEMTIIYVEASGKSLFK 318



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>PPA5_RAT (P29288) Tartrate-resistant acid phosphatase type 5 precursor (EC|
           3.1.3.2) (TR-AP) (Tartrate-resistant acid ATPase)
           (TrATPase) (Acid phosphatase 5, tartrate resistant)
          Length = 327

 Score = 45.4 bits (106), Expect = 8e-05
 Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 7/114 (6%)
 Frame = -2

Query: 495 GHHTMRSVSDHGDTEEXXXXXXXXLKVNGIDFYINGHDHCLEHISSRNSPIQYFTSGGGS 316
           GH+ + S+++HG T          L   G+  Y+ GHDH L+++   N  + Y  SG G+
Sbjct: 206 GHYPIWSIAEHGPTRCLVKNLRPLLAAYGVTAYLCGHDHNLQYLQDENG-VGYVLSGAGN 264

Query: 315 ---KAWRGVYQPNDDKLQFFYDGQ----GFMSLQLNKDQADFIFYDVSGKVLYE 175
               + R   +  +  L+F Y  +    GF  +++   +    + + SGK L++
Sbjct: 265 FMDPSVRHQRKVPNGYLRFHYGSEDSLGGFTYVEIGSKEMSITYVEASGKSLFK 318



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>PPA5_HUMAN (P13686) Tartrate-resistant acid phosphatase type 5 precursor (EC|
           3.1.3.2) (TR-AP) (Tartrate-resistant acid ATPase)
           (TrATPase) (Acid phosphatase 5, tartrate resistant)
          Length = 325

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 7/114 (6%)
 Frame = -2

Query: 495 GHHTMRSVSDHGDTEEXXXXXXXXLKVNGIDFYINGHDHCLEHISSRNSPIQYFTSGGGS 316
           GH+ + S+++HG T          L   G+  Y+ GHDH L+++   N  + Y  SG G+
Sbjct: 204 GHYPVWSIAEHGPTHCLVKQLRPLLATYGVTAYLCGHDHNLQYLQDENG-VGYVLSGAGN 262

Query: 315 ---KAWRGVYQPNDDKLQFFYDGQ----GFMSLQLNKDQADFIFYDVSGKVLYE 175
               + R   +  +  L+F Y  +    GF  ++++  +    + + SGK L++
Sbjct: 263 FMDPSKRHQRKVPNGYLRFHYGTEDSLGGFAYVEISSKEMTVTYIEASGKSLFK 316



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>PPA5_RABIT (O97860) Tartrate-resistant acid phosphatase type 5 precursor (EC|
           3.1.3.2) (TR-AP) (Tartrate-resistant acid ATPase)
           (TrATPase) (Acid phosphatase 5, tartrate resistant)
          Length = 325

 Score = 43.1 bits (100), Expect = 4e-04
 Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 10/117 (8%)
 Frame = -2

Query: 495 GHHTMRSVSDHGDTEEXXXXXXXXLKVNGIDFYINGHDHCLEHISSRNSPIQYFTSGGG- 319
           GH+ + S+++HG T          L   G+  Y+ GHDH L+++   N  + Y  SG G 
Sbjct: 204 GHYPVWSIAEHGPTHCLVKKLQPLLVKYGVTAYLCGHDHNLQYLQDENG-VGYVLSGAGN 262

Query: 318 -----SKAWRGVYQPNDDKLQFFYDGQ----GFMSLQLNKDQADFIFYDVSGKVLYE 175
                ++  R V  PN   L+F Y  +    GF  L++   +    + + SGK L++
Sbjct: 263 FMDPSTQHQRSV--PN-GYLRFHYGAENSLGGFAYLEITPKEMTVTYMEASGKSLFK 316



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>PPA5_PIG (P09889) Tartrate-resistant acid phosphatase type 5 precursor (EC|
           3.1.3.2) (TR-AP) (Tartrate-resistant acid ATPase)
           (TrATPase) (Acid phosphatase 5, tartrate resistant)
           (Uteroferrin) (UF)
          Length = 340

 Score = 39.3 bits (90), Expect = 0.006
 Identities = 25/114 (21%), Positives = 55/114 (48%), Gaps = 7/114 (6%)
 Frame = -2

Query: 495 GHHTMRSVSDHGDTEEXXXXXXXXLKVNGIDFYINGHDHCLEHISSRNSPIQYFTSGGGS 316
           GH+ + S+++HG T          L  + +  Y+ GHDH L+++   N  + +  SG G+
Sbjct: 212 GHYPVWSIAEHGPTHCLVKQLLPLLTTHKVTAYLCGHDHNLQYLQDENG-LGFVLSGAGN 270

Query: 315 ---KAWRGVYQPNDDKLQFFYDGQ----GFMSLQLNKDQADFIFYDVSGKVLYE 175
               + + + +  +  L+F +  +    GF  +++   +    + + SGK L++
Sbjct: 271 FMDPSKKHLRKVPNGYLRFHFGAENSLGGFAYVEITPKEMSVTYIEASGKSLFK 324



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>AGO1_SCHPO (O74957) Cell cycle control protein ago1 (RNA interference pathway|
           protein ago1)
          Length = 834

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = -2

Query: 327 GGGSKAWRGVYQPNDDKLQFFYDGQGFMSLQLNKDQADFIFYDVSGKVLYEWT 169
           GGG +AW+G YQ            QGFMS+ ++   + F   D   ++L E+T
Sbjct: 174 GGGVEAWKGFYQS-------IRPNQGFMSVNVDISSSAFWRNDSLLQILMEYT 219



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>RPOC_PSEF5 (Q4K527) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1399

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = +1

Query: 319 TASTSEVLDWTVSAANVFQAVVMPIDVEVDAVNLEDRKKQLQELL 453
           + S + ++D TV  A +FQ  V+P  +  D VNL  +KK + +L+
Sbjct: 563 SVSATRIVDTTVGRALLFQ--VVPKGLSFDVVNLPMKKKAISKLI 605



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>ATP8_MYXGL (O63913) ATP synthase protein 8 (EC 3.6.3.14) (ATPase subunit 8)|
           (A6L)
          Length = 54

 Score = 29.3 bits (64), Expect = 6.1
 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
 Frame = +2

Query: 359 LLMCSRQWSC-PLM*KSM----PLTLRTGRSNCRSSSVSPWSL 472
           LLM    W C PLM  S+    PLTL+T   +   SS +PW L
Sbjct: 10  LLMALSLWVCFPLMMLSLSSFLPLTLKTSLPSTLKSSPNPWIL 52



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>GTFD_STRMU (P49331) Glucosyltransferase-S precursor (EC 2.4.1.5) (GTF-S)|
            (Dextransucrase) (Sucrose 6-glucosyltransferase)
          Length = 1462

 Score = 29.3 bits (64), Expect = 6.1
 Identities = 18/92 (19%), Positives = 35/92 (38%), Gaps = 21/92 (22%)
 Frame = -2

Query: 402  FYINGHDHCLEHISSRNSPIQYFTSGG---------------------GSKAWRGVYQPN 286
            +Y + + H +  +   N  +QYF S G                     G++   G Y  +
Sbjct: 1128 YYFDNNGHMVYGLQHLNGEVQYFLSNGVQLRESFLENADGSKNYFGHLGNRYSNGYYSFD 1187

Query: 285  DDKLQFFYDGQGFMSLQLNKDQADFIFYDVSG 190
            +D    ++D  G M++ L     +  ++D  G
Sbjct: 1188 NDSKWRYFDASGVMAVGLKTINGNTQYFDQDG 1219



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>RPOC_PSEPF (Q3K5Y2) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1399

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 15/45 (33%), Positives = 27/45 (60%)
 Frame = +1

Query: 319 TASTSEVLDWTVSAANVFQAVVMPIDVEVDAVNLEDRKKQLQELL 453
           + + + ++D TV  A +FQ  V+P  +  D VNL  +KK + +L+
Sbjct: 563 SVNNTRIVDTTVGRALLFQ--VVPKGLSFDVVNLPMKKKAISKLI 605


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,653,149
Number of Sequences: 219361
Number of extensions: 1543723
Number of successful extensions: 3463
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3459
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3523384522
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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