ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd15n12 |
|---|---|
| Clone Library Name | barley_pub |
>UCHL5_MOUSE (Q9WUP7) Ubiquitin carboxyl-terminal hydrolase isozyme L5 (EC| 3.4.19.12) (UCH-L5) (Ubiquitin thioesterase L5) (Ubiquitin C-terminal hydrolase UCH37) Length = 329 Score = 141 bits (356), Expect = 1e-33 Identities = 76/182 (41%), Positives = 113/182 (62%), Gaps = 3/182 (1%) Frame = -1 Query: 576 SKDDDVYHFISYVPVDGVLYELDGLKEGPISLGKCPGGIGEMGWLKMVQPVIQERIDKFS 397 +K++D +HF+SYVPV+G LYELDGL+EGPI LG C + W+ V+PVI++RI K+S Sbjct: 157 AKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGAC----NQDDWITAVRPVIEKRIQKYS 212 Query: 396 QNEIRFSVMAITKNRKEIFIMELKELQR---KRENLLSQMGDPSANRQRPSVERSLAEVA 226 + EIRF++MAI +RK I+ ++ ELQR + E + + G + + V R+ + Sbjct: 213 EGEIRFNLMAIVSDRKMIYEQKIAELQRQLAEEEPMDTDQGSTVLSAIQSEVARNQMLIE 272 Query: 225 AQIEAVTXXXXXXXXXXXXXKTENIRRKHNYVPFLFNFLKILEEKQQLKPLIEKAKQNSH 46 +++ + K ENIRRKHNY+PF+ LK L E QQL PL+EKAK+ + Sbjct: 273 EEVQKL-----------KRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQN 321 Query: 45 GR 40 + Sbjct: 322 AK 323
>UCHL5_BOVIN (Q9XSJ0) Ubiquitin carboxyl-terminal hydrolase isozyme L5 (EC| 3.4.19.12) (UCH-L5) (Ubiquitin thioesterase L5) (Ubiquitin C-terminal hydrolase UCH37) Length = 328 Score = 141 bits (355), Expect = 2e-33 Identities = 75/181 (41%), Positives = 113/181 (62%), Gaps = 2/181 (1%) Frame = -1 Query: 576 SKDDDVYHFISYVPVDGVLYELDGLKEGPISLGKCPGGIGEMGWLKMVQPVIQERIDKFS 397 +K++D +HF+SYVPV+G LYELDGL+EGPI LG C + W+ V+PVI++RI K+S Sbjct: 157 AKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGAC----NQDDWISAVRPVIEKRIQKYS 212 Query: 396 QNEIRFSVMAITKNRKEIFIMELKELQRK--RENLLSQMGDPSANRQRPSVERSLAEVAA 223 + EIRF++MAI +RK I+ ++ ELQR+ E + + G + + V ++ + Sbjct: 213 EGEIRFNLMAIVSDRKMIYEQKIAELQRQLAEEPMDTDQGSNMLSAIQSEVAKNQMLIEE 272 Query: 222 QIEAVTXXXXXXXXXXXXXKTENIRRKHNYVPFLFNFLKILEEKQQLKPLIEKAKQNSHG 43 +++ + K ENIRRKHNY+PF+ LK L E QQL PL+EKAK+ + Sbjct: 273 EVQKL-----------KRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQNA 321 Query: 42 R 40 + Sbjct: 322 K 322
>UCHL5_HUMAN (Q9Y5K5) Ubiquitin carboxyl-terminal hydrolase isozyme L5 (EC| 3.4.19.12) (UCH-L5) (Ubiquitin thioesterase L5) (Ubiquitin C-terminal hydrolase UCH37) Length = 329 Score = 140 bits (354), Expect = 2e-33 Identities = 75/182 (41%), Positives = 113/182 (62%), Gaps = 3/182 (1%) Frame = -1 Query: 576 SKDDDVYHFISYVPVDGVLYELDGLKEGPISLGKCPGGIGEMGWLKMVQPVIQERIDKFS 397 +K++D +HF+SYVPV+G LYELDGL+EGPI LG C + W V+PVI++RI K+S Sbjct: 157 AKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGAC----NQDDWFSAVRPVIEKRIQKYS 212 Query: 396 QNEIRFSVMAITKNRKEIFIMELKELQR---KRENLLSQMGDPSANRQRPSVERSLAEVA 226 + EIRF++MAI +RK I+ ++ ELQR + E + + G+ + + V ++ + Sbjct: 213 EGEIRFNLMAIVSDRKMIYEQKIAELQRQLAEEEPMDTDQGNSMLSAIQSEVAKNQMLIE 272 Query: 225 AQIEAVTXXXXXXXXXXXXXKTENIRRKHNYVPFLFNFLKILEEKQQLKPLIEKAKQNSH 46 +++ + K ENIRRKHNY+PF+ LK L E QQL PL+EKAK+ + Sbjct: 273 EEVQKL-----------KRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQN 321 Query: 45 GR 40 + Sbjct: 322 AK 323
>UBH4_CAEEL (Q09444) Probable ubiquitin carboxyl-terminal hydrolase ubh-4 (EC| 3.4.19.12) (Ubiquitin C-terminal hydrolase family 1 member 4) (Ubiquitin thioesterase 4) Length = 321 Score = 102 bits (255), Expect = 6e-22 Identities = 56/173 (32%), Positives = 97/173 (56%) Frame = -1 Query: 573 KDDDVYHFISYVPVDGVLYELDGLKEGPISLGKCPGGIGEMGWLKMVQPVIQERIDKFSQ 394 + +D YHF++YVP+ +YELDGL+E P+ + + E W++ ++PVIQ+R+ K+S+ Sbjct: 152 ESEDNYHFVTYVPIGNKVYELDGLRELPLEVAEFQK---EQDWIEAIKPVIQQRMQKYSE 208 Query: 393 NEIRFSVMAITKNRKEIFIMELKELQRKRENLLSQMGDPSANRQRPSVERSLAEVAAQIE 214 EI F++MA+ NRK+ +LQ ENL+ + Q + +++A+ ++E Sbjct: 209 GEITFNLMALVPNRKQ-------KLQEMMENLIQANENNELEEQIADLNKAIADEDYKME 261 Query: 213 AVTXXXXXXXXXXXXXKTENIRRKHNYVPFLFNFLKILEEKQQLKPLIEKAKQ 55 + EN RR+HNY PF+ +KIL ++ +L L++ A Q Sbjct: 262 --------------MYRKENNRRRHNYTPFVIELMKILAKEGKLVGLVDNAYQ 300
>UBLH2_SCHPO (Q9UUB6) Ubiquitin carboxyl-terminal hydrolase 2 (EC 3.1.2.15)| Length = 300 Score = 63.9 bits (154), Expect = 3e-10 Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 16/108 (14%) Frame = -1 Query: 570 DDDVYHFISYVPVDGVLYELDGLKEGPISLGKCPGGIGEMGWLKMVQPVIQERIDKFSQN 391 +D+VYHFI+Y ++ V YELDGL+ PI+ G C + + + VIQ RI + Sbjct: 154 EDEVYHFIAYTNINNVFYELDGLQAAPINHGSCT----KEEFAEKAVSVIQARIANYDPA 209 Query: 390 EIRFSVMAITKNRK----------------EIFIMELKELQRKRENLL 295 EIRF++M I K++K I + + K L+ KREN L Sbjct: 210 EIRFNLMVICKDKKASLLTREDLTDEEKAASIAVEDEKRLRWKRENQL 257
>BAP1_MOUSE (Q99PU7) Ubiquitin carboxyl-terminal hydrolase BAP1 (EC 3.4.19.12)| (BRCA1-associated protein 1) (Ubiquitin C-terminal hydrolase X4) (UCH-X4) Length = 728 Score = 58.2 bits (139), Expect = 2e-08 Identities = 37/97 (38%), Positives = 54/97 (55%), Gaps = 4/97 (4%) Frame = -1 Query: 564 DVYHFISYVPVDGVLYELDGLKEGPISLGKCPGGIGEMGWLKMVQPVIQERIDKFSQNE- 388 + +HF+SYVP+ G L+ELDGLK PI G P G E W + VI ERI + E Sbjct: 166 EAFHFVSYVPITGRLFELDGLKVYPIDHG--PWGEDE-EWTDKARRVIMERIGLATAGEP 222 Query: 387 ---IRFSVMAITKNRKEIFIMELKELQRKRENLLSQM 286 IRF++MA+ +R+ + L L+ R+ +L + Sbjct: 223 YHDIRFNLMAVVPDRRIKYETRLHVLKVNRQTVLEAL 259
>BAP1_HUMAN (Q92560) Ubiquitin carboxyl-terminal hydrolase BAP1 (EC 3.4.19.12)| (BRCA1-associated protein 1) (Cerebral protein 6) Length = 729 Score = 58.2 bits (139), Expect = 2e-08 Identities = 37/97 (38%), Positives = 54/97 (55%), Gaps = 4/97 (4%) Frame = -1 Query: 564 DVYHFISYVPVDGVLYELDGLKEGPISLGKCPGGIGEMGWLKMVQPVIQERIDKFSQNE- 388 + +HF+SYVP+ G L+ELDGLK PI G P G E W + VI ERI + E Sbjct: 166 EAFHFVSYVPITGRLFELDGLKVYPIDHG--PWGEDE-EWTDKARRVIMERIGLATAGEP 222 Query: 387 ---IRFSVMAITKNRKEIFIMELKELQRKRENLLSQM 286 IRF++MA+ +R+ + L L+ R+ +L + Sbjct: 223 YHDIRFNLMAVVPDRRIKYEARLHVLKVNRQTVLEAL 259
>UCHL_DROME (P35122) Ubiquitin carboxyl-terminal hydrolase (EC 3.4.19.12)| (Ubiquitin thioesterase) Length = 227 Score = 43.1 bits (100), Expect = 6e-04 Identities = 26/67 (38%), Positives = 39/67 (58%) Frame = -1 Query: 561 VYHFISYVPVDGVLYELDGLKEGPISLGKCPGGIGEMGWLKMVQPVIQERIDKFSQNEIR 382 ++HFI+ V +G LYELDG K PI G E ++K V +E + + NE+R Sbjct: 162 IHHFIALVNKEGTLYELDGRKSFPIK----HGPTSEETFVKDAAKVCKEFMAR-DPNEVR 216 Query: 381 FSVMAIT 361 F+V+A+T Sbjct: 217 FTVLALT 223
>UCHL1_HUMAN (P09936) Ubiquitin carboxyl-terminal hydrolase isozyme L1 (EC| 3.4.19.12) (EC 6.-.-.-) (UCH-L1) (Ubiquitin thioesterase L1) (Neuron cytoplasmic protein 9.5) (PGP 9.5) (PGP9.5) Length = 223 Score = 40.8 bits (94), Expect = 0.003 Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 1/72 (1%) Frame = -1 Query: 570 DDDV-YHFISYVPVDGVLYELDGLKEGPISLGKCPGGIGEMGWLKMVQPVIQERIDKFSQ 394 DD V +HFI + VDG LYELDG P++ G E LK V +E ++ Q Sbjct: 155 DDKVNFHFILFNNVDGHLYELDGRMPFPVN----HGASSEDTLLKDAAKVCREFTER-EQ 209 Query: 393 NEIRFSVMAITK 358 E+RFS +A+ K Sbjct: 210 GEVRFSAVALCK 221
>UCHL1_RAT (Q00981) Ubiquitin carboxyl-terminal hydrolase isozyme L1 (EC| 3.4.19.12) (EC 6.-.-.-) (UCH-L1) (Ubiquitin thioesterase L1) (Neuron cytoplasmic protein 9.5) (PGP 9.5) (PGP9.5) Length = 223 Score = 40.0 bits (92), Expect = 0.005 Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 1/72 (1%) Frame = -1 Query: 570 DDDV-YHFISYVPVDGVLYELDGLKEGPISLGKCPGGIGEMGWLKMVQPVIQERIDKFSQ 394 DD V +HFI + VDG LYELDG P++ G E L+ V +E ++ Q Sbjct: 155 DDKVNFHFILFNNVDGHLYELDGRMPFPVN----HGASSEDSLLQDAAKVCREFTER-EQ 209 Query: 393 NEIRFSVMAITK 358 E+RFS +A+ K Sbjct: 210 GEVRFSAVALCK 221
>UCHL1_PIG (Q6SEG5) Ubiquitin carboxyl-terminal hydrolase isozyme L1 (EC| 3.4.19.12) (EC 6.-.-.-) (UCH-L1) (Ubiquitin thioesterase L1) Length = 223 Score = 40.0 bits (92), Expect = 0.005 Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 1/72 (1%) Frame = -1 Query: 570 DDDV-YHFISYVPVDGVLYELDGLKEGPISLGKCPGGIGEMGWLKMVQPVIQERIDKFSQ 394 DD V +HFI + VDG LYELDG P++ G E L+ V +E ++ Q Sbjct: 155 DDKVNFHFILFNNVDGHLYELDGRMPFPVN----HGASSEDSLLQDAAKVCREFTER-EQ 209 Query: 393 NEIRFSVMAITK 358 E+RFS +A+ K Sbjct: 210 GEVRFSAVALCK 221
>UCHL1_MOUSE (Q9R0P9) Ubiquitin carboxyl-terminal hydrolase isozyme L1 (EC| 3.4.19.12) (EC 6.-.-.-) (UCH-L1) (Ubiquitin thioesterase L1) (Neuron cytoplasmic protein 9.5) (PGP 9.5) (PGP9.5) Length = 223 Score = 40.0 bits (92), Expect = 0.005 Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 1/72 (1%) Frame = -1 Query: 570 DDDV-YHFISYVPVDGVLYELDGLKEGPISLGKCPGGIGEMGWLKMVQPVIQERIDKFSQ 394 DD V +HFI + VDG LYELDG P++ G E L+ V +E ++ Q Sbjct: 155 DDKVNFHFILFNNVDGHLYELDGRMPFPVN----HGASSEDSLLQDAAKVCREFTER-EQ 209 Query: 393 NEIRFSVMAITK 358 E+RFS +A+ K Sbjct: 210 GEVRFSAVALCK 221
>UCHL1_MACFA (Q60HC8) Ubiquitin carboxyl-terminal hydrolase isozyme L1 (EC| 3.4.19.12) (EC 6.-.-.-) (UCH-L1) (Ubiquitin thioesterase L1) Length = 223 Score = 39.7 bits (91), Expect = 0.006 Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 1/72 (1%) Frame = -1 Query: 570 DDDV-YHFISYVPVDGVLYELDGLKEGPISLGKCPGGIGEMGWLKMVQPVIQERIDKFSQ 394 DD V +HFI + VDG LYELDG P++ G G L+ V +E ++ Q Sbjct: 155 DDKVNFHFILFNNVDGHLYELDGRMPFPVNHGASSEGT----LLQDAAKVCREFTER-EQ 209 Query: 393 NEIRFSVMAITK 358 E+RFS +A+ K Sbjct: 210 GEVRFSAVALCK 221
>UCHL4_MOUSE (P58321) Ubiquitin carboxyl-terminal hydrolase isozyme L4 (EC| 3.4.19.12) (UCH-L4) (Ubiquitin thioesterase L4) Length = 233 Score = 39.3 bits (90), Expect = 0.008 Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 1/76 (1%) Frame = -1 Query: 585 EQKSKDDDV-YHFISYVPVDGVLYELDGLKEGPISLGKCPGGIGEMGWLKMVQPVIQERI 409 E S D+ V HFI+ V VDG LYELDG K PI+ GK + L+ V V ++ + Sbjct: 161 EAPSIDEKVDLHFIALVHVDGHLYELDGWKPFPINHGK----TSDETLLEDVIKVCKKFM 216 Query: 408 DKFSQNEIRFSVMAIT 361 ++ +E+RF+ +A++ Sbjct: 217 ER-DPDELRFNAIALS 231
>UCHL1_HORSE (Q9GM50) Ubiquitin carboxyl-terminal hydrolase isozyme L1 (EC| 3.4.19.12) (EC 6.-.-.-) (UCH-L1) (Ubiquitin thioesterase L1) (Neuron cytoplasmic protein 9.5) (PGP 9.5) (PGP9.5) Length = 223 Score = 38.5 bits (88), Expect = 0.014 Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 1/72 (1%) Frame = -1 Query: 570 DDDV-YHFISYVPVDGVLYELDGLKEGPISLGKCPGGIGEMGWLKMVQPVIQERIDKFSQ 394 DD V +HFI + VDG LYELDG P++ G E L+ V +E ++ Q Sbjct: 155 DDKVNFHFILFNNVDGHLYELDGRMPFPVN----HGASSEDLLLQDAAKVCREFTER-EQ 209 Query: 393 NEIRFSVMAITK 358 E+RFS +A+ K Sbjct: 210 GEVRFSAVALCK 221
>UCHL3_RAT (Q91Y78) Ubiquitin carboxyl-terminal hydrolase isozyme L3 (EC| 3.4.19.12) (UCH-L3) (Ubiquitin thioesterase L3) Length = 230 Score = 37.7 bits (86), Expect = 0.024 Identities = 22/38 (57%), Positives = 25/38 (65%), Gaps = 1/38 (2%) Frame = -1 Query: 585 EQKSKDDDV-YHFISYVPVDGVLYELDGLKEGPISLGK 475 E S D+ V HFI+ V VDG LYELDG K PI+ GK Sbjct: 158 EAPSIDEKVDLHFIALVHVDGHLYELDGRKPFPINHGK 195
>UCHL3_MOUSE (Q9JKB1) Ubiquitin carboxyl-terminal hydrolase isozyme L3 (EC| 3.4.19.12) (UCH-L3) (Ubiquitin thioesterase L3) Length = 230 Score = 37.7 bits (86), Expect = 0.024 Identities = 22/38 (57%), Positives = 25/38 (65%), Gaps = 1/38 (2%) Frame = -1 Query: 585 EQKSKDDDV-YHFISYVPVDGVLYELDGLKEGPISLGK 475 E S D+ V HFI+ V VDG LYELDG K PI+ GK Sbjct: 158 EAPSIDEKVDLHFIALVHVDGHLYELDGRKPFPINHGK 195
>UCHL3_HUMAN (P15374) Ubiquitin carboxyl-terminal hydrolase isozyme L3 (EC| 3.4.19.12) (UCH-L3) (Ubiquitin thioesterase L3) Length = 230 Score = 36.2 bits (82), Expect = 0.071 Identities = 21/38 (55%), Positives = 25/38 (65%), Gaps = 1/38 (2%) Frame = -1 Query: 585 EQKSKDDDV-YHFISYVPVDGVLYELDGLKEGPISLGK 475 E S D+ V HFI+ V VDG LYELDG K PI+ G+ Sbjct: 158 EAPSIDEKVDLHFIALVHVDGHLYELDGRKPFPINHGE 195
>UCHL_APLCA (O01391) Ubiquitin carboxyl-terminal hydrolase (EC 3.4.19.12)| (Ubiquitin thioesterase) Length = 214 Score = 34.7 bits (78), Expect = 0.21 Identities = 17/34 (50%), Positives = 23/34 (67%), Gaps = 1/34 (2%) Frame = -1 Query: 576 SKDDDVY-HFISYVPVDGVLYELDGLKEGPISLG 478 S+D+ V HF++ V +G LYELDG KE P+ G Sbjct: 156 SQDEHVKSHFVALVHCNGTLYELDGRKEAPVVHG 189
>UBL1_YEAST (P35127) Ubiquitin carboxyl-terminal hydrolase YUH1 (EC 3.4.19.12)| (Ubiquitin thioesterase) Length = 236 Score = 32.0 bits (71), Expect = 1.3 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Frame = -1 Query: 567 DDVYHFISYVPVDGVLYELDGLK-EGPISLGKCPGGIGEMGWLKMVQPVIQERIDKFSQN 391 D H+I+YV +G ++ELDG GP+ LGK ++ + Q +++ R+ + +N Sbjct: 162 DTNLHYITYVEENGGIFELDGRNLSGPLYLGKSDPTATDL----IEQELVRVRVASYMEN 217
>UBLH1_SCHPO (Q10171) Probable ubiquitin carboxyl-terminal hydrolase 1 (EC| 3.1.2.15) Length = 222 Score = 30.8 bits (68), Expect = 3.0 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 7/82 (8%) Frame = -1 Query: 585 EQKSKDDDV---YHFISYVPV----DGVLYELDGLKEGPISLGKCPGGIGEMGWLKMVQP 427 E + ++DV HFI +V D YELDG +EGP+ + + L +++ Sbjct: 145 EVEGSEEDVETDLHFICFVKGKSKDDNHFYELDGRQEGPVQHSEIESDLLNAEVLSVIKN 204 Query: 426 VIQERIDKFSQNEIRFSVMAIT 361 IQ F FS++AIT Sbjct: 205 YIQSIDSPF------FSLVAIT 220
>HRPX_PLALO (P04929) Histidine-rich glycoprotein precursor| Length = 351 Score = 30.8 bits (68), Expect = 3.0 Identities = 10/23 (43%), Positives = 13/23 (56%) Frame = +3 Query: 507 HQAHTGHRQQEHS**NGRHHHPW 575 H AH H ++ H + HHHPW Sbjct: 138 HAAHHHHHEEHHHHHHAAHHHPW 160
>PCDG3_PANTR (Q5DRB7) Protocadherin gamma A3 precursor (PCDH-gamma-A3)| Length = 932 Score = 30.0 bits (66), Expect = 5.1 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 3/69 (4%) Frame = +1 Query: 376 TEPYLILRELIDAFLDDRLHHLQPPHLPNATWAFSQANRSFL*SIKLIQDT---VNRNIA 546 +EP LI ++L++ D L PP N W FSQA R + DT N Sbjct: 788 SEPLLITQDLLEMKGDSNLLQQAPP---NTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFD 844 Query: 547 NEMVDIIIL 573 EM+ +IL Sbjct: 845 TEMLQAMIL 853
>PCDG3_HUMAN (Q9Y5H0) Protocadherin gamma A3 precursor (PCDH-gamma-A3)| Length = 932 Score = 30.0 bits (66), Expect = 5.1 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 3/69 (4%) Frame = +1 Query: 376 TEPYLILRELIDAFLDDRLHHLQPPHLPNATWAFSQANRSFL*SIKLIQDT---VNRNIA 546 +EP LI ++L++ D L PP N W FSQA R + DT N Sbjct: 788 SEPLLITQDLLEMKGDSNLLQQAPP---NTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFD 844 Query: 547 NEMVDIIIL 573 EM+ +IL Sbjct: 845 TEMLQAMIL 853
>YCEH_ECOLI (P29217) Hypothetical protein yceH (G20.3)| Length = 215 Score = 30.0 bits (66), Expect = 5.1 Identities = 24/104 (23%), Positives = 53/104 (50%), Gaps = 2/104 (1%) Frame = -1 Query: 585 EQKSKDDDVYHFISYVPVDGVLYELDGLKEGP--ISLGKCPGGIGEMGWLKMVQPVIQER 412 E +S+ +Y F V+ L +L ++GP + L + PG E ++ + ++ Sbjct: 116 ELRSRAARMYEFSDMAEVESTLEQLANREDGPFVVRLAREPGK-RENRYMHLFSGEVE-- 172 Query: 411 IDKFSQNEIRFSVMAITKNRKEIFIMELKELQRKRENLLSQMGD 280 D+ + ++ +V + R E +E+ EL+++ ++LL+ +GD Sbjct: 173 -DQPAVTDMSNAVDGDLQARVEALEIEVAELKQRLDSLLAHLGD 215
>PCDG6_PANTR (Q5DRB4) Protocadherin gamma A6 precursor (PCDH-gamma-A6)| Length = 932 Score = 29.6 bits (65), Expect = 6.7 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 3/69 (4%) Frame = +1 Query: 376 TEPYLILRELIDAFLDDRLHHLQPPHLPNATWAFSQANRSFL*SIKLIQDT---VNRNIA 546 +EP LI ++L++ D R PP N W FSQA R + DT N Sbjct: 788 SEPLLITQDLLETKGDPRQLQQAPP---NTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFD 844 Query: 547 NEMVDIIIL 573 EM+ +IL Sbjct: 845 TEMLQAMIL 853
>PCDG4_PANTR (Q5DRB6) Protocadherin gamma A4 precursor (PCDH-gamma-A4)| Length = 931 Score = 29.3 bits (64), Expect = 8.7 Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 3/69 (4%) Frame = +1 Query: 376 TEPYLILRELIDAFLDDRLHHLQPPHLPNATWAFSQANRSFL*SIKLIQDT---VNRNIA 546 +EP LI ++L++ D L Q P PN W FSQA R + DT N Sbjct: 788 SEPLLITQDLLETKGDPNLQ--QAP--PNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFD 843 Query: 547 NEMVDIIIL 573 EM+ +IL Sbjct: 844 TEMLQAMIL 852
>PCDG4_HUMAN (Q9Y5G9) Protocadherin gamma A4 precursor (PCDH-gamma-A4)| Length = 931 Score = 29.3 bits (64), Expect = 8.7 Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 3/69 (4%) Frame = +1 Query: 376 TEPYLILRELIDAFLDDRLHHLQPPHLPNATWAFSQANRSFL*SIKLIQDT---VNRNIA 546 +EP LI ++L++ D L Q P PN W FSQA R + DT N Sbjct: 788 SEPLLITQDLLETKGDPNLQ--QAP--PNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFD 843 Query: 547 NEMVDIIIL 573 EM+ +IL Sbjct: 844 TEMLQAMIL 852
>PLCB1_MOUSE (Q9Z1B3) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase| beta 1 (EC 3.1.4.11) (Phosphoinositide phospholipase C) (Phospholipase C-beta-1) (PLC-beta-1) (PLC-I) (PLC-154) Length = 1216 Score = 29.3 bits (64), Expect = 8.7 Identities = 24/109 (22%), Positives = 44/109 (40%) Frame = -1 Query: 360 KNRKEIFIMELKELQRKRENLLSQMGDPSANRQRPSVERSLAEVAAQIEAVTXXXXXXXX 181 K KEI E KEL++K + + + ++ + +E E+ Sbjct: 1055 KKLKEICEKEKKELKKKMDKKRQEKITEATSKDKSQMEEEKTEMIRSYIQEVVQYIKRLE 1114 Query: 180 XXXXXKTENIRRKHNYVPFLFNFLKILEEKQQLKPLIEKAKQNSHGRNP 34 + E + KHN + +IL+EK +L+ +E+ Q+ R P Sbjct: 1115 EAQSKRQEKLVEKHNEIR-----QQILDEKPKLQTELEQEYQDKFKRLP 1158
>SYA_MYCGE (P47534) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 900 Score = 29.3 bits (64), Expect = 8.7 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%) Frame = +1 Query: 295 QEVLPLPLK--FLELHDENFLPVLCDSHDTEPYLILRELIDAF 417 Q+ L L +K L L DEN V+ +D EP L+L+ L D F Sbjct: 789 QQALALSIKKQLLSLVDENKSYVIATFNDVEPKLLLQTLHDVF 831
>CADH1_RAT (Q9R0T4) Epithelial-cadherin precursor (E-cadherin) (Uvomorulin)| (Cadherin-1) (CD324 antigen) [Contains: E-Cad/CTF1; E-Cad/CTF2; E-Cad/CTF3] Length = 886 Score = 29.3 bits (64), Expect = 8.7 Identities = 11/19 (57%), Positives = 15/19 (78%) Frame = -1 Query: 456 EMGWLKMVQPVIQERIDKF 400 E GWLK+ QP+ +E IDK+ Sbjct: 214 ETGWLKVTQPLDREAIDKY 232 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,160,648 Number of Sequences: 219361 Number of extensions: 1345538 Number of successful extensions: 4842 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 4643 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4821 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5044307840 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
