Clone Name | rbasd16c10 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK059186.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-G09, full insert sequence Length = 611 Score = 507 bits (256), Expect = e-140 Identities = 397/444 (89%) Strand = Plus / Minus Query: 170 gctgtcaagccagataattgtatatctgggggttactccggtctctctccaggtactccc 229 ||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||| Sbjct: 474 gctgtcaagccaggtaattgtagatctgggggttactcctgtctctctccaggtactccc 415 Query: 230 tgtcgattaggctctctattctcttcttcatgtccgctggcttaatcgggaacttaagct 289 |||||||||||||||||||||| ||||| || |||| |||||| || |||||||| |||| Sbjct: 414 tgtcgattaggctctctattcttttcttgatatccgatggcttgattgggaacttgagct 355 Query: 290 gctggaaaagctcagttattagaagggtgtggctgagtgttttcctcgtcttcataattc 349 |||| |||||||||||||||||||| ||||||||||| ||||| | |||||||| |||| Sbjct: 354 gctgaaaaagctcagttattagaagcgtgtggctgagggttttacgtgtcttcattattc 295 Query: 350 gaactatggctgcatcaacctgatactgacgatcttgaaatactctctcagtggtgcttg 409 |||||||||| ||||| ||||||||||| | || || |||||||||||||| ||||||| Sbjct: 294 gaactatggcagcatccacctgatactgtctgtcctggaatactctctcagttgtgcttg 235 Query: 410 tgttttcttctactgtttccttcatctgaattgcattcacctttatgcgataaaggggag 469 |||||||||| || || |||||||||||||| |||||||||||||||||||| || || | Sbjct: 234 tgttttcttcaaccgtctccttcatctgaatagcattcacctttatgcgatagagagggg 175 Query: 470 cactaaaatcttcattaaatacgaattcgtccttatcatctatatctcgtccttttggtg 529 ||||||| |||||||||||||| |||||||||||||| |||| ||||| |||||||| Sbjct: 174 cactaaattcttcattaaatacaaattcgtccttatcttctacgtctcgcccttttggca 115 Query: 530 tcttttggagaaccctaactttgccacatgcaagtgactgcagtgttcttctcaattctt 589 ||||||||||||||| |||||| || ||||||||||| ||||| ||||||| |||||||| Sbjct: 114 tcttttggagaacccgaactttaccgcatgcaagtgattgcagcgttcttcgcaattctt 55 Query: 590 tatcctcaataccagtcgactcct 613 ||||||||||||||||||| |||| Sbjct: 54 tatcctcaataccagtcgattcct 31
>gb|DQ431854.1| Oryza sativa cullin mRNA, partial cds Length = 545 Score = 484 bits (244), Expect = e-133 Identities = 395/444 (88%), Gaps = 1/444 (0%) Strand = Plus / Minus Query: 170 gctgtcaagccagataattgtatatctgggggttactccggtctctctccaggtactccc 229 ||||||||||||| |||||||| |||||||| ||||||| |||||||||||||||||||| Sbjct: 445 gctgtcaagccaggtaattgtagatctgggg-ttactcctgtctctctccaggtactccc 387 Query: 230 tgtcgattaggctctctattctcttcttcatgtccgctggcttaatcgggaacttaagct 289 |||||||||||||||||||||| ||||| || |||| |||||| || |||||||| |||| Sbjct: 386 tgtcgattaggctctctattcttttcttgatatccgatggcttgattgggaacttgagct 327 Query: 290 gctggaaaagctcagttattagaagggtgtggctgagtgttttcctcgtcttcataattc 349 |||| |||||||||||||||||||| ||||||||||| ||||| | |||||||| |||| Sbjct: 326 gctgaaaaagctcagttattagaagcgtgtggctgagggttttacgtgtcttcattattc 267 Query: 350 gaactatggctgcatcaacctgatactgacgatcttgaaatactctctcagtggtgcttg 409 |||||||||| ||||| ||||||||||| | || || |||||||||||||| ||||||| Sbjct: 266 gaactatggcagcatccacctgatactgtctgtcctggaatactctctcagttgtgcttg 207 Query: 410 tgttttcttctactgtttccttcatctgaattgcattcacctttatgcgataaaggggag 469 |||||||||| || | |||||||||||||| |||||||||||||||||||| || || | Sbjct: 206 tgttttcttcaaccgcctccttcatctgaatagcattcacctttatgcgatagagagggg 147 Query: 470 cactaaaatcttcattaaatacgaattcgtccttatcatctatatctcgtccttttggtg 529 ||||||| |||||||||||||| |||||||||||||| |||| ||||| |||||||| Sbjct: 146 cactaaattcttcattaaatacaaattcgtccttatcttctacgtctcgcccttttggca 87 Query: 530 tcttttggagaaccctaactttgccacatgcaagtgactgcagtgttcttctcaattctt 589 ||||||||||||||| |||||| || ||||||||||| ||||| ||||||| |||||||| Sbjct: 86 tcttttggagaacccgaactttaccgcatgcaagtgattgcagcgttcttcgcaattctt 27 Query: 590 tatcctcaataccagtcgactcct 613 ||||||||||||||||||| |||| Sbjct: 26 tatcctcaataccagtcgattcct 3
>gb|BT018674.1| Zea mays clone EL01N0510E08.d mRNA sequence Length = 1769 Score = 466 bits (235), Expect = e-128 Identities = 385/435 (88%) Strand = Plus / Minus Query: 171 ctgtcaagccagataattgtatatctgggggttactccggtctctctccaggtactccct 230 ||||||||||||||| ||||| |||||||||||||||| ||| | |||||||||||||| Sbjct: 1525 ctgtcaagccagatagttgtagatctgggggttactcctgtcccgctccaggtactcccg 1466 Query: 231 gtcgattaggctctctattctcttcttcatgtccgctggcttaatcgggaacttaagctg 290 ||| |||| |||||||||||| ||||| || || |||||||||| |||||||||||||| Sbjct: 1465 gtctattaagctctctattcttttcttgatatcagctggcttaacagggaacttaagctg 1406 Query: 291 ctggaaaagctcagttattagaagggtgtggctgagtgttttcctcgtcttcataattcg 350 |||| ||||||| |||||||||||||||||||| || |||| ||||||||| ||||| Sbjct: 1405 ctggtaaagctcggttattagaagggtgtggctcaggaccttccgcgtcttcattattcg 1346 Query: 351 aactatggctgcatcaacctgatactgacgatcttgaaatactctctcagtggtgcttgt 410 ||||||||| ||||||||||||||||| ||||| || || ||||||||||||||||| || Sbjct: 1345 aactatggccgcatcaacctgatactgccgatcctggaacactctctcagtggtgctcgt 1286 Query: 411 gttttcttctactgtttccttcatctgaattgcattcacctttatgcgataaaggggagc 470 |||||||||||| || |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct: 1285 gttttcttctaccgtctccttcatttgaattgcatttacctttatgcgatagaggggagc 1226 Query: 471 actaaaatcttcattaaatacgaattcgtccttatcatctatatctcgtccttttggtgt 530 ||||||||||||||| ||||| || || |||||||| |||| ||||| ||||||||| | Sbjct: 1225 actaaaatcttcattgaatacaaagtcatccttatcttctacatctctcccttttggtat 1166 Query: 531 cttttggagaaccctaactttgccacatgcaagtgactgcagtgttcttctcaattcttt 590 |||||||||||||| |||||| ||||||||||| || |||||||| | |||||||||||| Sbjct: 1165 cttttggagaacccgaactttaccacatgcaagcgattgcagtgtccgtctcaattcttt 1106 Query: 591 atcctcaataccagt 605 |||||| |||||||| Sbjct: 1105 atcctcgataccagt 1091
>gb|AY105209.1| Zea mays PCO104930 mRNA sequence Length = 1490 Score = 466 bits (235), Expect = e-128 Identities = 385/435 (88%) Strand = Plus / Minus Query: 171 ctgtcaagccagataattgtatatctgggggttactccggtctctctccaggtactccct 230 ||||||||||||||| ||||| |||||||||||||||| ||| | |||||||||||||| Sbjct: 1305 ctgtcaagccagatagttgtagatctgggggttactcctgtcccgctccaggtactcccg 1246 Query: 231 gtcgattaggctctctattctcttcttcatgtccgctggcttaatcgggaacttaagctg 290 ||| |||| |||||||||||| ||||| || || |||||||||| |||||||||||||| Sbjct: 1245 gtctattaagctctctattcttttcttgatatcagctggcttaacagggaacttaagctg 1186 Query: 291 ctggaaaagctcagttattagaagggtgtggctgagtgttttcctcgtcttcataattcg 350 |||| ||||||| |||||||||||||||||||| || |||| ||||||||| ||||| Sbjct: 1185 ctggtaaagctcggttattagaagggtgtggctcaggaccttccgcgtcttcattattcg 1126 Query: 351 aactatggctgcatcaacctgatactgacgatcttgaaatactctctcagtggtgcttgt 410 ||||||||| ||||||||||||||||| ||||| || || ||||||||||||||||| || Sbjct: 1125 aactatggccgcatcaacctgatactgccgatcctggaacactctctcagtggtgctcgt 1066 Query: 411 gttttcttctactgtttccttcatctgaattgcattcacctttatgcgataaaggggagc 470 |||||||||||| || |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct: 1065 gttttcttctaccgtctccttcatttgaattgcatttacctttatgcgatagaggggagc 1006 Query: 471 actaaaatcttcattaaatacgaattcgtccttatcatctatatctcgtccttttggtgt 530 ||||||||||||||| ||||| || || |||||||| |||| ||||| ||||||||| | Sbjct: 1005 actaaaatcttcattgaatacaaagtcatccttatcttctacatctctcccttttggtat 946 Query: 531 cttttggagaaccctaactttgccacatgcaagtgactgcagtgttcttctcaattcttt 590 |||||||||||||| |||||| ||||||||||| || |||||||| | |||||||||||| Sbjct: 945 cttttggagaacccgaactttaccacatgcaagcgattgcagtgtccgtctcaattcttt 886 Query: 591 atcctcaataccagt 605 |||||| |||||||| Sbjct: 885 atcctcgataccagt 871
>gb|AC084296.12| Oryza sativa chromosome 3 BAC OSJNBb0024J04 genomic sequence, complete sequence Length = 145507 Score = 161 bits (81), Expect = 3e-36 Identities = 111/121 (91%) Strand = Plus / Minus Query: 170 gctgtcaagccagataattgtatatctgggggttactccggtctctctccaggtactccc 229 ||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||| Sbjct: 27035 gctgtcaagccaggtaattgtagatctgggggttactcctgtctctctccaggtactccc 26976 Query: 230 tgtcgattaggctctctattctcttcttcatgtccgctggcttaatcgggaacttaagct 289 |||||||||||||||||||||| ||||| || |||| |||||| || |||||||| |||| Sbjct: 26975 tgtcgattaggctctctattcttttcttgatatccgatggcttgattgggaacttgagct 26916 Query: 290 g 290 | Sbjct: 26915 g 26915 Score = 109 bits (55), Expect = 1e-20 Identities = 76/83 (91%) Strand = Plus / Minus Query: 531 cttttggagaaccctaactttgccacatgcaagtgactgcagtgttcttctcaattcttt 590 |||||||||||||| |||||| || ||||||||||| ||||| ||||||| ||||||||| Sbjct: 26000 cttttggagaacccgaactttaccgcatgcaagtgattgcagcgttcttcgcaattcttt 25941 Query: 591 atcctcaataccagtcgactcct 613 |||||||||||||||||| |||| Sbjct: 25940 atcctcaataccagtcgattcct 25918 Score = 95.6 bits (48), Expect = 2e-16 Identities = 75/84 (89%) Strand = Plus / Minus Query: 288 ctgctggaaaagctcagttattagaagggtgtggctgagtgttttcctcgtcttcataat 347 |||||| |||||||||||||||||||| ||||||||||| ||||| | |||||||| || Sbjct: 26831 ctgctgaaaaagctcagttattagaagcgtgtggctgagggttttacgtgtcttcattat 26772 Query: 348 tcgaactatggctgcatcaacctg 371 |||||||||||| ||||| ||||| Sbjct: 26771 tcgaactatggcagcatccacctg 26748 Score = 89.7 bits (45), Expect = 1e-14 Identities = 75/85 (88%) Strand = Plus / Minus Query: 367 acctgatactgacgatcttgaaatactctctcagtggtgcttgtgttttcttctactgtt 426 ||||||||||| | || || |||||||||||||| ||||||||||||||||| || || Sbjct: 26335 acctgatactgtctgtcctggaatactctctcagttgtgcttgtgttttcttcaaccgtc 26276 Query: 427 tccttcatctgaattgcattcacct 451 |||||||||||||| |||||||||| Sbjct: 26275 tccttcatctgaatagcattcacct 26251 Score = 87.7 bits (44), Expect = 4e-14 Identities = 71/80 (88%) Strand = Plus / Minus Query: 448 acctttatgcgataaaggggagcactaaaatcttcattaaatacgaattcgtccttatca 507 |||||||||||||| || || |||||||| |||||||||||||| |||||||||||||| Sbjct: 26159 acctttatgcgatagagaggggcactaaattcttcattaaatacaaattcgtccttatct 26100 Query: 508 tctatatctcgtccttttgg 527 |||| ||||| |||||||| Sbjct: 26099 tctacgtctcgcccttttgg 26080
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 161 bits (81), Expect = 3e-36 Identities = 111/121 (91%) Strand = Plus / Minus Query: 170 gctgtcaagccagataattgtatatctgggggttactccggtctctctccaggtactccc 229 ||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||| Sbjct: 32374907 gctgtcaagccaggtaattgtagatctgggggttactcctgtctctctccaggtactccc 32374848 Query: 230 tgtcgattaggctctctattctcttcttcatgtccgctggcttaatcgggaacttaagct 289 |||||||||||||||||||||| ||||| || |||| |||||| || |||||||| |||| Sbjct: 32374847 tgtcgattaggctctctattcttttcttgatatccgatggcttgattgggaacttgagct 32374788 Query: 290 g 290 | Sbjct: 32374787 g 32374787 Score = 109 bits (55), Expect = 1e-20 Identities = 76/83 (91%) Strand = Plus / Minus Query: 531 cttttggagaaccctaactttgccacatgcaagtgactgcagtgttcttctcaattcttt 590 |||||||||||||| |||||| || ||||||||||| ||||| ||||||| ||||||||| Sbjct: 32373872 cttttggagaacccgaactttaccgcatgcaagtgattgcagcgttcttcgcaattcttt 32373813 Query: 591 atcctcaataccagtcgactcct 613 |||||||||||||||||| |||| Sbjct: 32373812 atcctcaataccagtcgattcct 32373790 Score = 95.6 bits (48), Expect = 2e-16 Identities = 75/84 (89%) Strand = Plus / Minus Query: 288 ctgctggaaaagctcagttattagaagggtgtggctgagtgttttcctcgtcttcataat 347 |||||| |||||||||||||||||||| ||||||||||| ||||| | |||||||| || Sbjct: 32374703 ctgctgaaaaagctcagttattagaagcgtgtggctgagggttttacgtgtcttcattat 32374644 Query: 348 tcgaactatggctgcatcaacctg 371 |||||||||||| ||||| ||||| Sbjct: 32374643 tcgaactatggcagcatccacctg 32374620 Score = 89.7 bits (45), Expect = 1e-14 Identities = 75/85 (88%) Strand = Plus / Minus Query: 367 acctgatactgacgatcttgaaatactctctcagtggtgcttgtgttttcttctactgtt 426 ||||||||||| | || || |||||||||||||| ||||||||||||||||| || || Sbjct: 32374207 acctgatactgtctgtcctggaatactctctcagttgtgcttgtgttttcttcaaccgtc 32374148 Query: 427 tccttcatctgaattgcattcacct 451 |||||||||||||| |||||||||| Sbjct: 32374147 tccttcatctgaatagcattcacct 32374123 Score = 87.7 bits (44), Expect = 4e-14 Identities = 71/80 (88%) Strand = Plus / Minus Query: 448 acctttatgcgataaaggggagcactaaaatcttcattaaatacgaattcgtccttatca 507 |||||||||||||| || || |||||||| |||||||||||||| |||||||||||||| Sbjct: 32374031 acctttatgcgatagagaggggcactaaattcttcattaaatacaaattcgtccttatct 32373972 Query: 508 tctatatctcgtccttttgg 527 |||| ||||| |||||||| Sbjct: 32373971 tctacgtctcgcccttttgg 32373952
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 161 bits (81), Expect = 3e-36 Identities = 111/121 (91%) Strand = Plus / Minus Query: 170 gctgtcaagccagataattgtatatctgggggttactccggtctctctccaggtactccc 229 ||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||| Sbjct: 32465417 gctgtcaagccaggtaattgtagatctgggggttactcctgtctctctccaggtactccc 32465358 Query: 230 tgtcgattaggctctctattctcttcttcatgtccgctggcttaatcgggaacttaagct 289 |||||||||||||||||||||| ||||| || |||| |||||| || |||||||| |||| Sbjct: 32465357 tgtcgattaggctctctattcttttcttgatatccgatggcttgattgggaacttgagct 32465298 Query: 290 g 290 | Sbjct: 32465297 g 32465297 Score = 109 bits (55), Expect = 1e-20 Identities = 76/83 (91%) Strand = Plus / Minus Query: 531 cttttggagaaccctaactttgccacatgcaagtgactgcagtgttcttctcaattcttt 590 |||||||||||||| |||||| || ||||||||||| ||||| ||||||| ||||||||| Sbjct: 32464382 cttttggagaacccgaactttaccgcatgcaagtgattgcagcgttcttcgcaattcttt 32464323 Query: 591 atcctcaataccagtcgactcct 613 |||||||||||||||||| |||| Sbjct: 32464322 atcctcaataccagtcgattcct 32464300 Score = 95.6 bits (48), Expect = 2e-16 Identities = 75/84 (89%) Strand = Plus / Minus Query: 288 ctgctggaaaagctcagttattagaagggtgtggctgagtgttttcctcgtcttcataat 347 |||||| |||||||||||||||||||| ||||||||||| ||||| | |||||||| || Sbjct: 32465213 ctgctgaaaaagctcagttattagaagcgtgtggctgagggttttacgtgtcttcattat 32465154 Query: 348 tcgaactatggctgcatcaacctg 371 |||||||||||| ||||| ||||| Sbjct: 32465153 tcgaactatggcagcatccacctg 32465130 Score = 89.7 bits (45), Expect = 1e-14 Identities = 75/85 (88%) Strand = Plus / Minus Query: 367 acctgatactgacgatcttgaaatactctctcagtggtgcttgtgttttcttctactgtt 426 ||||||||||| | || || |||||||||||||| ||||||||||||||||| || || Sbjct: 32464717 acctgatactgtctgtcctggaatactctctcagttgtgcttgtgttttcttcaaccgtc 32464658 Query: 427 tccttcatctgaattgcattcacct 451 |||||||||||||| |||||||||| Sbjct: 32464657 tccttcatctgaatagcattcacct 32464633 Score = 87.7 bits (44), Expect = 4e-14 Identities = 71/80 (88%) Strand = Plus / Minus Query: 448 acctttatgcgataaaggggagcactaaaatcttcattaaatacgaattcgtccttatca 507 |||||||||||||| || || |||||||| |||||||||||||| |||||||||||||| Sbjct: 32464541 acctttatgcgatagagaggggcactaaattcttcattaaatacaaattcgtccttatct 32464482 Query: 508 tctatatctcgtccttttgg 527 |||| ||||| |||||||| Sbjct: 32464481 tctacgtctcgcccttttgg 32464462
>gb|AY059387.2| Olea europaea putative cullin protein mRNA, complete cds Length = 2640 Score = 129 bits (65), Expect = 1e-26 Identities = 211/257 (82%), Gaps = 2/257 (0%) Strand = Plus / Minus Query: 216 ctccaggtactccctgtcgattaggctctctattctcttcttcatgtccgctggcttaat 275 |||||||||||||||||| ||||||||||| || |||||||||| ||| ||||| || || Sbjct: 2410 ctccaggtactccctgtctattaggctctcaatcctcttcttcaagtc-gctggttttat 2352 Query: 276 cgggaac-ttaagctgctggaaaagctcagttattagaagggtgtggctgagtgttttcc 334 |||||| || |||||||| || || || ||||| | || |||||||| | | ||||| Sbjct: 2351 ggggaaccttgagctgctgaaagagttcggttatcaagagtgtgtggctcaatactttcc 2292 Query: 335 tcgtcttcataattcgaactatggctgcatcaacctgatactgacgatcttgaaatactc 394 | ||||||||||| ||||| || || ||||||||||| || || || ||||||||||| | Sbjct: 2291 ttgtcttcataatccgaacaatagcagcatcaacctggtattgccggtcttgaaataccc 2232 Query: 395 tctcagtggtgcttgtgttttcttctactgtttccttcatctgaattgcattcaccttta 454 ||||||| ||||| | || || || || ||||||||||||||||| || || ||||||| Sbjct: 2231 tctcagtagtgctagcattctcctcaacggtttccttcatctgaatggcgtttaccttta 2172 Query: 455 tgcgataaaggggagca 471 | ||||| || |||||| Sbjct: 2171 tacgatagagaggagca 2155
>emb|Y16124.1|LES16124 Lycopersicon esculentum mRNA for putative cullin protein Length = 2344 Score = 119 bits (60), Expect = 1e-23 Identities = 165/200 (82%) Strand = Plus / Minus Query: 277 gggaacttaagctgctggaaaagctcagttattagaagggtgtggctgagtgttttcctc 336 ||||| ||||||||||| || || |||||||||| ||||| || || || ||| || Sbjct: 2088 gggaatttaagctgctgaaagagttcagttattaagagggtatgactcagcacttttctg 2029 Query: 337 gtcttcataattcgaactatggctgcatcaacctgatactgacgatcttgaaatactctc 396 |||||||| || | ||| || || ||||||||||| ||||| || || |||||||||||| Sbjct: 2028 gtcttcattatcctaacaatagcagcatcaacctggtactgccggtcctgaaatactctc 1969 Query: 397 tcagtggtgcttgtgttttcttctactgtttccttcatctgaattgcattcacctttatg 456 ||||| ||||||||||| || || ||||||||||||||||| || ||||| |||||||| Sbjct: 1968 tcagtagtgcttgtgttctcctcaactgtttccttcatctggatggcatttacctttata 1909 Query: 457 cgataaaggggagcactaaa 476 ||||| || |||||| |||| Sbjct: 1908 cgatatagtggagcagtaaa 1889 Score = 52.0 bits (26), Expect = 0.002 Identities = 59/70 (84%) Strand = Plus / Minus Query: 513 atctcgtccttttggtgtcttttggagaaccctaactttgccacatgcaagtgactgcag 572 ||||| ||||||||| |||| |||||||| | |||||| ||||||||||| ||||| || Sbjct: 1853 atctcttccttttggaatcttctggagaacacgaacttttccacatgcaagagactgtag 1794 Query: 573 tgttcttctc 582 || |||||| Sbjct: 1793 agtccttctc 1784
>ref|NM_123990.2| Arabidopsis thaliana CUL4 AT5G46210 (CUL4) mRNA, complete cds Length = 2687 Score = 101 bits (51), Expect = 3e-18 Identities = 234/295 (79%) Strand = Plus / Minus Query: 176 aagccagataattgtatatctgggggttactccggtctctctccaggtactccctgtcga 235 |||| ||||||||||||||||| ||||| || || ||||||| || || | |||| Sbjct: 2534 aagcaagataattgtatatctgagggttgcttttttccctctccaaatattctcgatcga 2475 Query: 236 ttaggctctctattctcttcttcatgtccgctggcttaatcgggaacttaagctgctgga 295 | | |||||| || |||||||||| || || ||||| |||||||| || ||||| |||| Sbjct: 2474 tcaagctctcaatcctcttcttcagatcagcaggctttatcgggaatttgagctgttgga 2415 Query: 296 aaagctcagttattagaagggtgtggctgagtgttttcctcgtcttcataattcgaacta 355 | |||||||| |||||||| || ||||| | ||| || ||||||||||| ||||| | Sbjct: 2414 agagctcagtgattagaagagtatggctcaagacttttcttgtcttcataatacgaacaa 2355 Query: 356 tggctgcatcaacctgatactgacgatcttgaaatactctctcagtggtgcttgtgtttt 415 |||||||||| | ||| || || || || || |||||||| || || || |||||||| | Sbjct: 2354 tggctgcatcgatctggtattgtcggtcctggaatactctttccgttgtacttgtgttct 2295 Query: 416 cttctactgtttccttcatctgaattgcattcacctttatgcgataaaggggagc 470 | |||||||| || |||||||| || ||||| ||||| |||||||| || ||||| Sbjct: 2294 cctctactgtctctttcatctggatcgcatttaccttaatgcgatacagcggagc 2240
>gb|AY091113.1| Arabidopsis thaliana putative cullin (At5g46210) mRNA, complete cds Length = 2678 Score = 101 bits (51), Expect = 3e-18 Identities = 234/295 (79%) Strand = Plus / Minus Query: 176 aagccagataattgtatatctgggggttactccggtctctctccaggtactccctgtcga 235 |||| ||||||||||||||||| ||||| || || ||||||| || || | |||| Sbjct: 2534 aagcaagataattgtatatctgagggttgcttttttccctctccaaatattctcgatcga 2475 Query: 236 ttaggctctctattctcttcttcatgtccgctggcttaatcgggaacttaagctgctgga 295 | | |||||| || |||||||||| || || ||||| |||||||| || ||||| |||| Sbjct: 2474 tcaagctctcaatcctcttcttcagatcagcaggctttatcgggaatttgagctgttgga 2415 Query: 296 aaagctcagttattagaagggtgtggctgagtgttttcctcgtcttcataattcgaacta 355 | |||||||| |||||||| || ||||| | ||| || ||||||||||| ||||| | Sbjct: 2414 agagctcagtgattagaagagtatggctcaagacttttcttgtcttcataatacgaacaa 2355 Query: 356 tggctgcatcaacctgatactgacgatcttgaaatactctctcagtggtgcttgtgtttt 415 |||||||||| | ||| || || || || || |||||||| || || || |||||||| | Sbjct: 2354 tggctgcatcgatctggtattgtcggtcctggaatactctttccgttgtacttgtgttct 2295 Query: 416 cttctactgtttccttcatctgaattgcattcacctttatgcgataaaggggagc 470 | |||||||| || |||||||| || ||||| ||||| |||||||| || ||||| Sbjct: 2294 cctctactgtctctttcatctggatcgcatttaccttaatgcgatacagcggagc 2240
>emb|AJ318018.1|ATH318018 Arabidopsis thaliana mRNA for cullin 4 (cul4 gene) Length = 2547 Score = 101 bits (51), Expect = 3e-18 Identities = 234/295 (79%) Strand = Plus / Minus Query: 176 aagccagataattgtatatctgggggttactccggtctctctccaggtactccctgtcga 235 |||| ||||||||||||||||| ||||| || || ||||||| || || | |||| Sbjct: 2398 aagcaagataattgtatatctgagggttgcttttttccctctccaaatattctcgatcga 2339 Query: 236 ttaggctctctattctcttcttcatgtccgctggcttaatcgggaacttaagctgctgga 295 | | |||||| || |||||||||| || || ||||| |||||||| || ||||| |||| Sbjct: 2338 tcaagctctcaatcctcttcttcagatcagcaggctttatcgggaatttgagctgttgga 2279 Query: 296 aaagctcagttattagaagggtgtggctgagtgttttcctcgtcttcataattcgaacta 355 | |||||||| |||||||| || ||||| | ||| || ||||||||||| ||||| | Sbjct: 2278 agagctcagtgattagaagagtatggctcaagacttttcttgtcttcataatacgaacaa 2219 Query: 356 tggctgcatcaacctgatactgacgatcttgaaatactctctcagtggtgcttgtgtttt 415 |||||||||| | ||| || || || || || |||||||| || || || |||||||| | Sbjct: 2218 tggctgcatcgatctggtattgtcggtcctggaatactctttccgttgtacttgtgttct 2159 Query: 416 cttctactgtttccttcatctgaattgcattcacctttatgcgataaaggggagc 470 | |||||||| || |||||||| || ||||| ||||| |||||||| || ||||| Sbjct: 2158 cctctactgtctctttcatctggatcgcatttaccttaatgcgatacagcggagc 2104
>gb|AY084267.1| Arabidopsis thaliana clone 101723 mRNA, complete sequence Length = 2518 Score = 101 bits (51), Expect = 3e-18 Identities = 234/295 (79%) Strand = Plus / Minus Query: 176 aagccagataattgtatatctgggggttactccggtctctctccaggtactccctgtcga 235 |||| ||||||||||||||||| ||||| || || ||||||| || || | |||| Sbjct: 2398 aagcaagataattgtatatctgagggttgcttttttccctctccaaatattctcgatcga 2339 Query: 236 ttaggctctctattctcttcttcatgtccgctggcttaatcgggaacttaagctgctgga 295 | | |||||| || |||||||||| || || ||||| |||||||| || ||||| |||| Sbjct: 2338 tcaagctctcaatcctcttcttcagatcagcaggctttatcgggaatttgagctgttgga 2279 Query: 296 aaagctcagttattagaagggtgtggctgagtgttttcctcgtcttcataattcgaacta 355 | |||||||| |||||||| || ||||| | ||| || ||||||||||| ||||| | Sbjct: 2278 agagctcagtgattagaagagtatggctcaagacttttcttgtcttcataatacgaacaa 2219 Query: 356 tggctgcatcaacctgatactgacgatcttgaaatactctctcagtggtgcttgtgtttt 415 |||||||||| | ||| || || || || || |||||||| || || || |||||||| | Sbjct: 2218 tggctgcatcgatctggtattgtcggtcctggaatactctttccgttgtacttgtgttct 2159 Query: 416 cttctactgtttccttcatctgaattgcattcacctttatgcgataaaggggagc 470 | |||||||| || |||||||| || ||||| ||||| |||||||| || ||||| Sbjct: 2158 cctctactgtctctttcatctggatcgcatttaccttaatgcgatacagcggagc 2104
>gb|DQ159976.1| Polaskia chichipe microsatellite Pchi40 sequence Length = 850 Score = 87.7 bits (44), Expect = 4e-14 Identities = 71/80 (88%) Strand = Plus / Plus Query: 367 acctgatactgacgatcttgaaatactctctcagtggtgcttgtgttttcttctactgtt 426 |||||||| ||||| || ||||| ||||||||||| ||||||||||| ||||| || ||| Sbjct: 605 acctgatattgacggtcctgaaacactctctcagtagtgcttgtgttctcttccaccgtt 664 Query: 427 tccttcatctgaattgcatt 446 || ||||||||||||||||| Sbjct: 665 tctttcatctgaattgcatt 684
>ref|XM_615307.2| PREDICTED: Bos taurus similar to Cullin-4B (CUL-4B) (LOC541254), mRNA Length = 1443 Score = 81.8 bits (41), Expect = 2e-12 Identities = 104/125 (83%) Strand = Plus / Minus Query: 317 tgtggctgagtgttttcctcgtcttcataattcgaactatggctgcatcaacctgatact 376 ||||||| ||||| || ||| |||||||||||||||| || || ||||||| ||||||| Sbjct: 697 tgtggctaagtgtctttctcatcttcataattcgaacaattgcagcatcaatttgatact 638 Query: 377 gacgatcttgaaatactctctcagtggtgcttgtgttttcttctactgtttccttcatct 436 | | ||||||||||||||| || ||||| || | | |||||| || ||||| ||||||| Sbjct: 637 gtctatcttgaaatactctttctgtggtactagcttgttcttcaaccgtttctttcatct 578 Query: 437 gaatt 441 ||||| Sbjct: 577 gaatt 573 Score = 40.1 bits (20), Expect = 8.3 Identities = 41/48 (85%) Strand = Plus / Minus Query: 210 gtctctctccaggtactccctgtcgattaggctctctattctcttctt 257 ||||||||||| ||| |||| ||| |||||| |||||||||||||| Sbjct: 804 gtctctctccatgtagtcccggtcaattagggattctattctcttctt 757
>ref|XM_228689.3| PREDICTED: Rattus norvegicus similar to cullin 4B (LOC302502), mRNA Length = 3429 Score = 79.8 bits (40), Expect = 1e-11 Identities = 106/128 (82%) Strand = Plus / Minus Query: 310 agaagggtgtggctgagtgttttcctcgtcttcataattcgaactatggctgcatcaacc 369 |||||| ||||||| |||||||| ||| ||||||||||||| || || || ||||||| Sbjct: 2902 agaaggttgtggctaagtgtttttctcatcttcataattcggacgatcgcagcatcaatt 2843 Query: 370 tgatactgacgatcttgaaatactctctcagtggtgcttgtgttttcttctactgtttcc 429 || ||||| | ||||||||||||||| || || ||||||| | |||||| || ||||| Sbjct: 2842 tggtactgtctatcttgaaatactctttctgtagtgcttgcttgttcttcaaccgtttct 2783 Query: 430 ttcatctg 437 |||||||| Sbjct: 2782 ttcatctg 2775 Score = 63.9 bits (32), Expect = 6e-07 Identities = 59/68 (86%) Strand = Plus / Minus Query: 538 agaaccctaactttgccacatgcaagtgactgcagtgttcttctcaattctttatcctca 597 ||||| ||| |||||||||| || |||||||||||||||||||| |||||| |||||| Sbjct: 2674 agaactctagctttgccacaggctagtgactgcagtgttcttcttaattctccatcctct 2615 Query: 598 ataccagt 605 || ||||| Sbjct: 2614 attccagt 2607
>ref|NM_003588.2| Homo sapiens cullin 4B (CUL4B), mRNA Length = 3278 Score = 73.8 bits (37), Expect = 6e-10 Identities = 100/121 (82%) Strand = Plus / Minus Query: 317 tgtggctgagtgttttcctcgtcttcataattcgaactatggctgcatcaacctgatact 376 ||||||| ||||| || ||| |||||||||||||||| || || ||||||| ||||||| Sbjct: 3001 tgtggctaagtgtctttctcatcttcataattcgaacaattgcagcatcaatttgatact 2942 Query: 377 gacgatcttgaaatactctctcagtggtgcttgtgttttcttctactgtttccttcatct 436 | | |||||||||||||| || || ||||||| | |||||| || ||||| ||||||| Sbjct: 2941 gtctgtcttgaaatactctttctgtagtgcttgcttgttcttcaaccgtttctttcatct 2882 Query: 437 g 437 | Sbjct: 2881 g 2881 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Minus Query: 538 agaaccctaactttgccacatgcaagtgactgcagtgttct 578 ||||| ||| |||||||||| || | ||||||||||||||| Sbjct: 2780 agaactctagctttgccacaggctaatgactgcagtgttct 2740
>gb|AY365125.1| Homo sapiens cullin 4B (CUL4B) mRNA, complete cds Length = 2688 Score = 73.8 bits (37), Expect = 6e-10 Identities = 100/121 (82%) Strand = Plus / Minus Query: 317 tgtggctgagtgttttcctcgtcttcataattcgaactatggctgcatcaacctgatact 376 ||||||| ||||| || ||| |||||||||||||||| || || ||||||| ||||||| Sbjct: 2545 tgtggctaagtgtctttctcatcttcataattcgaacaattgcagcatcaatttgatact 2486 Query: 377 gacgatcttgaaatactctctcagtggtgcttgtgttttcttctactgtttccttcatct 436 | | |||||||||||||| || || ||||||| | |||||| || ||||| ||||||| Sbjct: 2485 gtctgtcttgaaatactctttctgtagtgcttgcttgttcttcaaccgtttctttcatct 2426 Query: 437 g 437 | Sbjct: 2425 g 2425 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Minus Query: 538 agaaccctaactttgccacatgcaagtgactgcagtgttct 578 ||||| ||| |||||||||| || | ||||||||||||||| Sbjct: 2324 agaactctagctttgccacaggctaatgactgcagtgttct 2284
>gb|BC004026.1| Mus musculus cullin 4B, mRNA (cDNA clone MGC:7617 IMAGE:3494708), complete cds Length = 3105 Score = 73.8 bits (37), Expect = 6e-10 Identities = 100/121 (82%) Strand = Plus / Minus Query: 317 tgtggctgagtgttttcctcgtcttcataattcgaactatggctgcatcaacctgatact 376 ||||||| |||||||| ||| |||||||||||||||| || || ||||||| || |||| Sbjct: 2890 tgtggctaagtgtttttctcatcttcataattcgaacgatcgcagcatcaatttggtact 2831 Query: 377 gacgatcttgaaatactctctcagtggtgcttgtgttttcttctactgtttccttcatct 436 | | |||||||||||||| || || ||||||| | |||||| || ||||| ||||||| Sbjct: 2830 gtctgtcttgaaatactctttctgtagtgcttgcttgttcttcaaccgtttctttcatct 2771 Query: 437 g 437 | Sbjct: 2770 g 2770 Score = 63.9 bits (32), Expect = 6e-07 Identities = 59/68 (86%) Strand = Plus / Minus Query: 538 agaaccctaactttgccacatgcaagtgactgcagtgttcttctcaattctttatcctca 597 ||||| ||| |||||||||| || |||||||||||||||||||| |||||| |||||| Sbjct: 2669 agaactctagctttgccacaggctagtgactgcagtgttcttcttaattctccatcctct 2610 Query: 598 ataccagt 605 || ||||| Sbjct: 2609 atcccagt 2602
>gb|BC010347.1| Mus musculus cullin 4B, mRNA (cDNA clone IMAGE:3707849), complete cds Length = 1568 Score = 73.8 bits (37), Expect = 6e-10 Identities = 100/121 (82%) Strand = Plus / Minus Query: 317 tgtggctgagtgttttcctcgtcttcataattcgaactatggctgcatcaacctgatact 376 ||||||| |||||||| ||| |||||||||||||||| || || ||||||| || |||| Sbjct: 1028 tgtggctaagtgtttttctcatcttcataattcgaacgatcgcagcatcaatttggtact 969 Query: 377 gacgatcttgaaatactctctcagtggtgcttgtgttttcttctactgtttccttcatct 436 | | |||||||||||||| || || ||||||| | |||||| || ||||| ||||||| Sbjct: 968 gtctgtcttgaaatactctttctgtagtgcttgcttgttcttcaaccgtttctttcatct 909 Query: 437 g 437 | Sbjct: 908 g 908 Score = 63.9 bits (32), Expect = 6e-07 Identities = 59/68 (86%) Strand = Plus / Minus Query: 538 agaaccctaactttgccacatgcaagtgactgcagtgttcttctcaattctttatcctca 597 ||||| ||| |||||||||| || |||||||||||||||||||| |||||| |||||| Sbjct: 807 agaactctagctttgccacaggctagtgactgcagtgttcttcttaattctccatcctct 748 Query: 598 ataccagt 605 || ||||| Sbjct: 747 atcccagt 740
>gb|AY330868.1| Mus musculus cullin 4B mRNA, complete cds Length = 3346 Score = 73.8 bits (37), Expect = 6e-10 Identities = 100/121 (82%) Strand = Plus / Minus Query: 317 tgtggctgagtgttttcctcgtcttcataattcgaactatggctgcatcaacctgatact 376 ||||||| |||||||| ||| |||||||||||||||| || || ||||||| || |||| Sbjct: 2843 tgtggctaagtgtttttctcatcttcataattcgaacgatcgcagcatcaatttggtact 2784 Query: 377 gacgatcttgaaatactctctcagtggtgcttgtgttttcttctactgtttccttcatct 436 | | |||||||||||||| || || ||||||| | |||||| || ||||| ||||||| Sbjct: 2783 gtctgtcttgaaatactctttctgtagtgcttgcttgttcttcaaccgtttctttcatct 2724 Query: 437 g 437 | Sbjct: 2723 g 2723 Score = 63.9 bits (32), Expect = 6e-07 Identities = 59/68 (86%) Strand = Plus / Minus Query: 538 agaaccctaactttgccacatgcaagtgactgcagtgttcttctcaattctttatcctca 597 ||||| ||| |||||||||| || |||||||||||||||||||| |||||| |||||| Sbjct: 2622 agaactctagctttgccacaggctagtgactgcagtgttcttcttaattctccatcctct 2563 Query: 598 ataccagt 605 || ||||| Sbjct: 2562 atcccagt 2555
>emb|BX537787.1|HSM805877 Homo sapiens mRNA; cDNA DKFZp779P1063 (from clone DKFZp779P1063); complete cds Length = 5164 Score = 73.8 bits (37), Expect = 6e-10 Identities = 100/121 (82%) Strand = Plus / Minus Query: 317 tgtggctgagtgttttcctcgtcttcataattcgaactatggctgcatcaacctgatact 376 ||||||| ||||| || ||| |||||||||||||||| || || ||||||| ||||||| Sbjct: 2860 tgtggctaagtgtctttctcatcttcataattcgaacaattgcagcatcaatttgatact 2801 Query: 377 gacgatcttgaaatactctctcagtggtgcttgtgttttcttctactgtttccttcatct 436 | | |||||||||||||| || || ||||||| | |||||| || ||||| ||||||| Sbjct: 2800 gtctgtcttgaaatactctttctgtagtgcttgcttgttcttcaaccgtttctttcatct 2741 Query: 437 g 437 | Sbjct: 2740 g 2740 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Minus Query: 538 agaaccctaactttgccacatgcaagtgactgcagtgttct 578 ||||| ||| |||||||||| || | ||||||||||||||| Sbjct: 2639 agaactctagctttgccacaggctaatgactgcagtgttct 2599
>gb|BC036216.1| Homo sapiens cullin 4B, mRNA (cDNA clone MGC:39677 IMAGE:5269392), complete cds Length = 3278 Score = 73.8 bits (37), Expect = 6e-10 Identities = 100/121 (82%) Strand = Plus / Minus Query: 317 tgtggctgagtgttttcctcgtcttcataattcgaactatggctgcatcaacctgatact 376 ||||||| ||||| || ||| |||||||||||||||| || || ||||||| ||||||| Sbjct: 3001 tgtggctaagtgtctttctcatcttcataattcgaacaattgcagcatcaatttgatact 2942 Query: 377 gacgatcttgaaatactctctcagtggtgcttgtgttttcttctactgtttccttcatct 436 | | |||||||||||||| || || ||||||| | |||||| || ||||| ||||||| Sbjct: 2941 gtctgtcttgaaatactctttctgtagtgcttgcttgttcttcaaccgtttctttcatct 2882 Query: 437 g 437 | Sbjct: 2881 g 2881 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Minus Query: 538 agaaccctaactttgccacatgcaagtgactgcagtgttct 578 ||||| ||| |||||||||| || | ||||||||||||||| Sbjct: 2780 agaactctagctttgccacaggctaatgactgcagtgttct 2740
>emb|CR936722.1| Homo sapiens mRNA; cDNA DKFZp686F1470 (from clone DKFZp686F1470) Length = 5162 Score = 73.8 bits (37), Expect = 6e-10 Identities = 100/121 (82%) Strand = Plus / Minus Query: 317 tgtggctgagtgttttcctcgtcttcataattcgaactatggctgcatcaacctgatact 376 ||||||| ||||| || ||| |||||||||||||||| || || ||||||| ||||||| Sbjct: 2869 tgtggctaagtgtctttctcatcttcataattcgaacaattgcagcatcaatttgatact 2810 Query: 377 gacgatcttgaaatactctctcagtggtgcttgtgttttcttctactgtttccttcatct 436 | | |||||||||||||| || || ||||||| | |||||| || ||||| ||||||| Sbjct: 2809 gtctgtcttgaaatactctttctgtagtgcttgcttgttcttcaaccgtttctttcatct 2750 Query: 437 g 437 | Sbjct: 2749 g 2749 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Minus Query: 538 agaaccctaactttgccacatgcaagtgactgcagtgttct 578 ||||| ||| |||||||||| || | ||||||||||||||| Sbjct: 2648 agaactctagctttgccacaggctaatgactgcagtgttct 2608
>dbj|AK123688.1| Homo sapiens cDNA FLJ41694 fis, clone HCHON2001217, highly similar to Homo sapiens cullin CUL4B (CUL4B) mRNA Length = 2924 Score = 73.8 bits (37), Expect = 6e-10 Identities = 100/121 (82%) Strand = Plus / Minus Query: 317 tgtggctgagtgttttcctcgtcttcataattcgaactatggctgcatcaacctgatact 376 ||||||| ||||| || ||| |||||||||||||||| || || ||||||| ||||||| Sbjct: 2713 tgtggctaagtgtctttctcatcttcataattcgaacaattgcagcatcaatttgatact 2654 Query: 377 gacgatcttgaaatactctctcagtggtgcttgtgttttcttctactgtttccttcatct 436 | | |||||||||||||| || || ||||||| | |||||| || ||||| ||||||| Sbjct: 2653 gtctgtcttgaaatactctttctgtagtgcttgcttgttcttcaaccgtttctttcatct 2594 Query: 437 g 437 | Sbjct: 2593 g 2593 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Minus Query: 538 agaaccctaactttgccacatgcaagtgactgcagtgttct 578 ||||| ||| |||||||||| || | ||||||||||||||| Sbjct: 2492 agaactctagctttgccacaggctaatgactgcagtgttct 2452
>emb|CR603224.1| full-length cDNA clone CS0DL008YI17 of B cells (Ramos cell line) Cot 25-normalized of Homo sapiens (human) Length = 2493 Score = 73.8 bits (37), Expect = 6e-10 Identities = 100/121 (82%) Strand = Plus / Minus Query: 317 tgtggctgagtgttttcctcgtcttcataattcgaactatggctgcatcaacctgatact 376 ||||||| ||||| || ||| |||||||||||||||| || || ||||||| ||||||| Sbjct: 244 tgtggctaagtgtctttctcatcttcataattcgaacaattgcagcatcaatttgatact 185 Query: 377 gacgatcttgaaatactctctcagtggtgcttgtgttttcttctactgtttccttcatct 436 | | |||||||||||||| || || ||||||| | |||||| || ||||| ||||||| Sbjct: 184 gtctgtcttgaaatactctttctgtagtgcttgcttgttcttcaaccgtttctttcatct 125 Query: 437 g 437 | Sbjct: 124 g 124
>dbj|AK160998.1| Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched library, clone:4022434I07 product:cullin 4B, full insert sequence Length = 3112 Score = 73.8 bits (37), Expect = 6e-10 Identities = 100/121 (82%) Strand = Plus / Minus Query: 317 tgtggctgagtgttttcctcgtcttcataattcgaactatggctgcatcaacctgatact 376 ||||||| |||||||| ||| |||||||||||||||| || || ||||||| || |||| Sbjct: 2612 tgtggctaagtgtttttctcatcttcataattcgaacgatcgcagcatcaatttggtact 2553 Query: 377 gacgatcttgaaatactctctcagtggtgcttgtgttttcttctactgtttccttcatct 436 | | |||||||||||||| || || ||||||| | |||||| || ||||| ||||||| Sbjct: 2552 gtctgtcttgaaatactctttctgtagtgcttgcttgttcttcaaccgtttctttcatct 2493 Query: 437 g 437 | Sbjct: 2492 g 2492 Score = 63.9 bits (32), Expect = 6e-07 Identities = 59/68 (86%) Strand = Plus / Minus Query: 538 agaaccctaactttgccacatgcaagtgactgcagtgttcttctcaattctttatcctca 597 ||||| ||| |||||||||| || |||||||||||||||||||| |||||| |||||| Sbjct: 2391 agaactctagctttgccacaggctagtgactgcagtgttcttcttaattctccatcctct 2332 Query: 598 ataccagt 605 || ||||| Sbjct: 2331 atcccagt 2324
>ref|XM_702943.1| PREDICTED: Danio rerio similar to Cullin-4B (CUL-4B), transcript variant 4 (LOC560313), mRNA Length = 4117 Score = 73.8 bits (37), Expect = 6e-10 Identities = 76/89 (85%) Strand = Plus / Minus Query: 319 tggctgagtgttttcctcgtcttcataattcgaactatggctgcatcaacctgatactga 378 |||||||| ||||||||| ||||||| |||||||| ||||| ||||| | || |||||| Sbjct: 2874 tggctgagagttttcctcatcttcatgattcgaacaatggcagcatcgatttggtactga 2815 Query: 379 cgatcttgaaatactctctcagtggtgct 407 ||||| || ||||||||||| || ||||| Sbjct: 2814 cgatcctggaatactctctctgtagtgct 2786
>ref|XM_702942.1| PREDICTED: Danio rerio similar to Cullin-4B (CUL-4B), transcript variant 3 (LOC560313), mRNA Length = 4141 Score = 73.8 bits (37), Expect = 6e-10 Identities = 76/89 (85%) Strand = Plus / Minus Query: 319 tggctgagtgttttcctcgtcttcataattcgaactatggctgcatcaacctgatactga 378 |||||||| ||||||||| ||||||| |||||||| ||||| ||||| | || |||||| Sbjct: 2898 tggctgagagttttcctcatcttcatgattcgaacaatggcagcatcgatttggtactga 2839 Query: 379 cgatcttgaaatactctctcagtggtgct 407 ||||| || ||||||||||| || ||||| Sbjct: 2838 cgatcctggaatactctctctgtagtgct 2810
>ref|XM_702941.1| PREDICTED: Danio rerio similar to Cullin-4B (CUL-4B), transcript variant 2 (LOC560313), mRNA Length = 4036 Score = 73.8 bits (37), Expect = 6e-10 Identities = 76/89 (85%) Strand = Plus / Minus Query: 319 tggctgagtgttttcctcgtcttcataattcgaactatggctgcatcaacctgatactga 378 |||||||| ||||||||| ||||||| |||||||| ||||| ||||| | || |||||| Sbjct: 2793 tggctgagagttttcctcatcttcatgattcgaacaatggcagcatcgatttggtactga 2734 Query: 379 cgatcttgaaatactctctcagtggtgct 407 ||||| || ||||||||||| || ||||| Sbjct: 2733 cgatcctggaatactctctctgtagtgct 2705
>ref|XM_680523.1| PREDICTED: Danio rerio similar to Cullin-4B (CUL-4B), transcript variant 1 (LOC560313), mRNA Length = 4099 Score = 73.8 bits (37), Expect = 6e-10 Identities = 76/89 (85%) Strand = Plus / Minus Query: 319 tggctgagtgttttcctcgtcttcataattcgaactatggctgcatcaacctgatactga 378 |||||||| ||||||||| ||||||| |||||||| ||||| ||||| | || |||||| Sbjct: 2856 tggctgagagttttcctcatcttcatgattcgaacaatggcagcatcgatttggtactga 2797 Query: 379 cgatcttgaaatactctctcagtggtgct 407 ||||| || ||||||||||| || ||||| Sbjct: 2796 cgatcctggaatactctctctgtagtgct 2768
>dbj|AK164640.1| Mus musculus 13 days embryo stomach cDNA, RIKEN full-length enriched library, clone:D530008P12 product:cullin 4B, full insert sequence Length = 2372 Score = 73.8 bits (37), Expect = 6e-10 Identities = 100/121 (82%) Strand = Plus / Minus Query: 317 tgtggctgagtgttttcctcgtcttcataattcgaactatggctgcatcaacctgatact 376 ||||||| |||||||| ||| |||||||||||||||| || || ||||||| || |||| Sbjct: 218 tgtggctaagtgtttttctcatcttcataattcgaacgatcgcagcatcaatttggtact 159 Query: 377 gacgatcttgaaatactctctcagtggtgcttgtgttttcttctactgtttccttcatct 436 | | |||||||||||||| || || ||||||| | |||||| || ||||| ||||||| Sbjct: 158 gtctgtcttgaaatactctttctgtagtgcttgcttgttcttcaaccgtttctttcatct 99 Query: 437 g 437 | Sbjct: 98 g 98
>dbj|AK170632.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630111G02 product:cullin 4B, full insert sequence Length = 3105 Score = 73.8 bits (37), Expect = 6e-10 Identities = 100/121 (82%) Strand = Plus / Minus Query: 317 tgtggctgagtgttttcctcgtcttcataattcgaactatggctgcatcaacctgatact 376 ||||||| |||||||| ||| |||||||||||||||| || || ||||||| || |||| Sbjct: 2899 tgtggctaagtgtttttctcatcttcataattcgaacgatcgcagcatcaatttggtact 2840 Query: 377 gacgatcttgaaatactctctcagtggtgcttgtgttttcttctactgtttccttcatct 436 | | |||||||||||||| || || ||||||| | |||||| || ||||| ||||||| Sbjct: 2839 gtctgtcttgaaatactctttctgtagtgcttgcttgttcttcaaccgtttctttcatct 2780 Query: 437 g 437 | Sbjct: 2779 g 2779 Score = 63.9 bits (32), Expect = 6e-07 Identities = 59/68 (86%) Strand = Plus / Minus Query: 538 agaaccctaactttgccacatgcaagtgactgcagtgttcttctcaattctttatcctca 597 ||||| ||| |||||||||| || |||||||||||||||||||| |||||| |||||| Sbjct: 2678 agaactctagctttgccacaggctagtgactgcagtgttcttcttaattctccatcctct 2619 Query: 598 ataccagt 605 || ||||| Sbjct: 2618 atcccagt 2611
>dbj|AK032701.1| Mus musculus 12 days embryo male wolffian duct includes surrounding region cDNA, RIKEN full-length enriched library, clone:6720405B21 product:cullin 4B, full insert sequence Length = 3049 Score = 73.8 bits (37), Expect = 6e-10 Identities = 100/121 (82%) Strand = Plus / Minus Query: 317 tgtggctgagtgttttcctcgtcttcataattcgaactatggctgcatcaacctgatact 376 ||||||| |||||||| ||| |||||||||||||||| || || ||||||| || |||| Sbjct: 2843 tgtggctaagtgtttttctcatcttcataattcgaacgatcgcagcatcaatttggtact 2784 Query: 377 gacgatcttgaaatactctctcagtggtgcttgtgttttcttctactgtttccttcatct 436 | | |||||||||||||| || || ||||||| | |||||| || ||||| ||||||| Sbjct: 2783 gtctgtcttgaaatactctttctgtagtgcttgcttgttcttcaaccgtttctttcatct 2724 Query: 437 g 437 | Sbjct: 2723 g 2723 Score = 63.9 bits (32), Expect = 6e-07 Identities = 59/68 (86%) Strand = Plus / Minus Query: 538 agaaccctaactttgccacatgcaagtgactgcagtgttcttctcaattctttatcctca 597 ||||| ||| |||||||||| || |||||||||||||||||||| |||||| |||||| Sbjct: 2622 agaactctagctttgccacaggctagtgactgcagtgttcttcttaattctccatcctct 2563 Query: 598 ataccagt 605 || ||||| Sbjct: 2562 atcccagt 2555
>dbj|AK012410.1| Mus musculus 11 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2700050M05 product:cullin 4B, full insert sequence Length = 3108 Score = 73.8 bits (37), Expect = 6e-10 Identities = 100/121 (82%) Strand = Plus / Minus Query: 317 tgtggctgagtgttttcctcgtcttcataattcgaactatggctgcatcaacctgatact 376 ||||||| |||||||| ||| |||||||||||||||| || || ||||||| || |||| Sbjct: 2605 tgtggctaagtgtttttctcatcttcataattcgaacgatcgcagcatcaatttggtact 2546 Query: 377 gacgatcttgaaatactctctcagtggtgcttgtgttttcttctactgtttccttcatct 436 | | |||||||||||||| || || ||||||| | |||||| || ||||| ||||||| Sbjct: 2545 gtctgtcttgaaatactctttctgtagtgcttgcttgttcttcaaccgtttctttcatct 2486 Query: 437 g 437 | Sbjct: 2485 g 2485 Score = 63.9 bits (32), Expect = 6e-07 Identities = 59/68 (86%) Strand = Plus / Minus Query: 538 agaaccctaactttgccacatgcaagtgactgcagtgttcttctcaattctttatcctca 597 ||||| ||| |||||||||| || |||||||||||||||||||| |||||| |||||| Sbjct: 2384 agaactctagctttgccacaggctagtgactgcagtgttcttcttaattctccatcctct 2325 Query: 598 ataccagt 605 || ||||| Sbjct: 2324 atcccagt 2317
>gb|AF212995.1|AF212995 Homo sapiens cullin CUL4B (CUL4B) mRNA, complete cds Length = 2810 Score = 73.8 bits (37), Expect = 6e-10 Identities = 100/121 (82%) Strand = Plus / Minus Query: 317 tgtggctgagtgttttcctcgtcttcataattcgaactatggctgcatcaacctgatact 376 ||||||| ||||| || ||| |||||||||||||||| || || ||||||| ||||||| Sbjct: 2615 tgtggctaagtgtctttctcatcttcataattcgaacaattgcagcatcaatttgatact 2556 Query: 377 gacgatcttgaaatactctctcagtggtgcttgtgttttcttctactgtttccttcatct 436 | | |||||||||||||| || || ||||||| | |||||| || ||||| ||||||| Sbjct: 2555 gtctgtcttgaaatactctttctgtagtgcttgcttgttcttcaaccgtttctttcatct 2496 Query: 437 g 437 | Sbjct: 2495 g 2495 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Minus Query: 538 agaaccctaactttgccacatgcaagtgactgcagtgttct 578 ||||| ||| |||||||||| || | ||||||||||||||| Sbjct: 2394 agaactctagctttgccacaggctaatgactgcagtgttct 2354
>emb|BX004980.8| Zebrafish DNA sequence from clone DKEY-15N5 in linkage group 14, complete sequence Length = 159333 Score = 73.8 bits (37), Expect = 6e-10 Identities = 76/89 (85%) Strand = Plus / Plus Query: 319 tggctgagtgttttcctcgtcttcataattcgaactatggctgcatcaacctgatactga 378 |||||||| ||||||||| ||||||| |||||||| ||||| ||||| | || |||||| Sbjct: 102358 tggctgagagttttcctcatcttcatgattcgaacaatggcagcatcgatttggtactga 102417 Query: 379 cgatcttgaaatactctctcagtggtgct 407 ||||| || ||||||||||| || ||||| Sbjct: 102418 cgatcctggaatactctctctgtagtgct 102446
>gb|AY890520.1| Synthetic construct Homo sapiens clone FLH135354.01X cullin 4B (CUL4B) mRNA, complete cds Length = 2742 Score = 73.8 bits (37), Expect = 6e-10 Identities = 100/121 (82%) Strand = Plus / Minus Query: 317 tgtggctgagtgttttcctcgtcttcataattcgaactatggctgcatcaacctgatact 376 ||||||| ||||| || ||| |||||||||||||||| || || ||||||| ||||||| Sbjct: 2599 tgtggctaagtgtctttctcatcttcataattcgaacaattgcagcatcaatttgatact 2540 Query: 377 gacgatcttgaaatactctctcagtggtgcttgtgttttcttctactgtttccttcatct 436 | | |||||||||||||| || || ||||||| | |||||| || ||||| ||||||| Sbjct: 2539 gtctgtcttgaaatactctttctgtagtgcttgcttgttcttcaaccgtttctttcatct 2480 Query: 437 g 437 | Sbjct: 2479 g 2479 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Minus Query: 538 agaaccctaactttgccacatgcaagtgactgcagtgttct 578 ||||| ||| |||||||||| || | ||||||||||||||| Sbjct: 2378 agaactctagctttgccacaggctaatgactgcagtgttct 2338
>emb|BX647096.1|HSM807240 Homo sapiens mRNA; cDNA DKFZp686H07166 (from clone DKFZp686H07166) Length = 5172 Score = 73.8 bits (37), Expect = 6e-10 Identities = 100/121 (82%) Strand = Plus / Minus Query: 317 tgtggctgagtgttttcctcgtcttcataattcgaactatggctgcatcaacctgatact 376 ||||||| ||||| || ||| |||||||||||||||| || || ||||||| ||||||| Sbjct: 2869 tgtggctaagtgtctttctcatcttcataattcgaacaattgcagcatcaatttgatact 2810 Query: 377 gacgatcttgaaatactctctcagtggtgcttgtgttttcttctactgtttccttcatct 436 | | |||||||||||||| || || ||||||| | |||||| || ||||| ||||||| Sbjct: 2809 gtctgtcttgaaatactctttctgtagtgcttgcttgttcttcaaccgtttctttcatct 2750 Query: 437 g 437 | Sbjct: 2749 g 2749
>dbj|AB093259.1| Mus musculus mRNA for mKIAA0695 protein Length = 5167 Score = 73.8 bits (37), Expect = 6e-10 Identities = 100/121 (82%) Strand = Plus / Minus Query: 317 tgtggctgagtgttttcctcgtcttcataattcgaactatggctgcatcaacctgatact 376 ||||||| |||||||| ||| |||||||||||||||| || || ||||||| || |||| Sbjct: 4961 tgtggctaagtgtttttctcatcttcataattcgaacgatcgcagcatcaatttggtact 4902 Query: 377 gacgatcttgaaatactctctcagtggtgcttgtgttttcttctactgtttccttcatct 436 | | |||||||||||||| || || ||||||| | |||||| || ||||| ||||||| Sbjct: 4901 gtctgtcttgaaatactctttctgtagtgcttgcttgttcttcaaccgtttctttcatct 4842 Query: 437 g 437 | Sbjct: 4841 g 4841 Score = 63.9 bits (32), Expect = 6e-07 Identities = 59/68 (86%) Strand = Plus / Minus Query: 538 agaaccctaactttgccacatgcaagtgactgcagtgttcttctcaattctttatcctca 597 ||||| ||| |||||||||| || |||||||||||||||||||| |||||| |||||| Sbjct: 4740 agaactctagctttgccacaggctagtgactgcagtgttcttcttaattctccatcctct 4681 Query: 598 ataccagt 605 || ||||| Sbjct: 4680 atcccagt 4673
>emb|BX537641.1|HSM806460 Homo sapiens mRNA; cDNA DKFZp686D0844 (from clone DKFZp686D0844) Length = 7394 Score = 73.8 bits (37), Expect = 6e-10 Identities = 100/121 (82%) Strand = Plus / Minus Query: 317 tgtggctgagtgttttcctcgtcttcataattcgaactatggctgcatcaacctgatact 376 ||||||| ||||| || ||| |||||||||||||||| || || ||||||| ||||||| Sbjct: 5091 tgtggctaagtgtctttctcatcttcataattcgaacaattgcagcatcaatttgatact 5032 Query: 377 gacgatcttgaaatactctctcagtggtgcttgtgttttcttctactgtttccttcatct 436 | | |||||||||||||| || || ||||||| | |||||| || ||||| ||||||| Sbjct: 5031 gtctgtcttgaaatactctttctgtagtgcttgcttgttcttcaaccgtttctttcatct 4972 Query: 437 g 437 | Sbjct: 4971 g 4971 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Minus Query: 538 agaaccctaactttgccacatgcaagtgactgcagtgttct 578 ||||| ||| |||||||||| || | ||||||||||||||| Sbjct: 4870 agaactctagctttgccacaggctaatgactgcagtgttct 4830
>gb|U58091.1|HSU58091 Human Hs-cul-4B mRNA, partial cds Length = 932 Score = 73.8 bits (37), Expect = 6e-10 Identities = 100/121 (82%) Strand = Plus / Minus Query: 317 tgtggctgagtgttttcctcgtcttcataattcgaactatggctgcatcaacctgatact 376 ||||||| ||||| || ||| |||||||||||||||| || || ||||||| ||||||| Sbjct: 725 tgtggctaagtgtctttctcatcttcataattcgaacaattgcagcatcaatttgatact 666 Query: 377 gacgatcttgaaatactctctcagtggtgcttgtgttttcttctactgtttccttcatct 436 | | |||||||||||||| || || ||||||| | |||||| || ||||| ||||||| Sbjct: 665 gtctgtcttgaaatactctttctgtagtgcttgcttgttcttcaaccgtttctttcatct 606 Query: 437 g 437 | Sbjct: 605 g 605
>ref|NM_028288.3| Mus musculus cullin 4B (Cul4b), mRNA Length = 3346 Score = 73.8 bits (37), Expect = 6e-10 Identities = 100/121 (82%) Strand = Plus / Minus Query: 317 tgtggctgagtgttttcctcgtcttcataattcgaactatggctgcatcaacctgatact 376 ||||||| |||||||| ||| |||||||||||||||| || || ||||||| || |||| Sbjct: 2843 tgtggctaagtgtttttctcatcttcataattcgaacgatcgcagcatcaatttggtact 2784 Query: 377 gacgatcttgaaatactctctcagtggtgcttgtgttttcttctactgtttccttcatct 436 | | |||||||||||||| || || ||||||| | |||||| || ||||| ||||||| Sbjct: 2783 gtctgtcttgaaatactctttctgtagtgcttgcttgttcttcaaccgtttctttcatct 2724 Query: 437 g 437 | Sbjct: 2723 g 2723 Score = 63.9 bits (32), Expect = 6e-07 Identities = 59/68 (86%) Strand = Plus / Minus Query: 538 agaaccctaactttgccacatgcaagtgactgcagtgttcttctcaattctttatcctca 597 ||||| ||| |||||||||| || |||||||||||||||||||| |||||| |||||| Sbjct: 2622 agaactctagctttgccacaggctagtgactgcagtgttcttcttaattctccatcctct 2563 Query: 598 ataccagt 605 || ||||| Sbjct: 2562 atcccagt 2555
>dbj|AB014595.2| Homo sapiens mRNA for KIAA0695 protein, partial cds Length = 4490 Score = 73.8 bits (37), Expect = 6e-10 Identities = 100/121 (82%) Strand = Plus / Minus Query: 317 tgtggctgagtgttttcctcgtcttcataattcgaactatggctgcatcaacctgatact 376 ||||||| ||||| || ||| |||||||||||||||| || || ||||||| ||||||| Sbjct: 2203 tgtggctaagtgtctttctcatcttcataattcgaacaattgcagcatcaatttgatact 2144 Query: 377 gacgatcttgaaatactctctcagtggtgcttgtgttttcttctactgtttccttcatct 436 | | |||||||||||||| || || ||||||| | |||||| || ||||| ||||||| Sbjct: 2143 gtctgtcttgaaatactctttctgtagtgcttgcttgttcttcaaccgtttctttcatct 2084 Query: 437 g 437 | Sbjct: 2083 g 2083 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Minus Query: 538 agaaccctaactttgccacatgcaagtgactgcagtgttct 578 ||||| ||| |||||||||| || | ||||||||||||||| Sbjct: 1982 agaactctagctttgccacaggctaatgactgcagtgttct 1942
>gb|AY389766.1| Hyacinthus orientalis cullin mRNA, partial cds Length = 812 Score = 65.9 bits (33), Expect = 1e-07 Identities = 165/209 (78%) Strand = Plus / Minus Query: 355 atggctgcatcaacctgatactgacgatcttgaaatactctctcagtggtgcttgtgttt 414 ||||||||||| |||||| |||| |||||||| || || | || || | |||||||||| Sbjct: 802 atggctgcatcgacctgagactgccgatcttggaaaaccgtttctgttgggcttgtgttt 743 Query: 415 tcttctactgtttccttcatctgaattgcattcacctttatgcgataaaggggagcacta 474 || || ||||| || ||||| |||||||| || || || ||||| || || || ||||| Sbjct: 742 tcctcgactgtctcgttcatgtgaattgcgtttacgttgatgcggtagagaggtgcactg 683 Query: 475 aaatcttcattaaatacgaattcgtccttatcatctatatctcgtccttttggtgtcttt 534 || |||||||| || || ||| || | |||||||| |||| ||||||||| |||| Sbjct: 682 aactcttcattgaacacaaatgaatcatcatcatctacttctcttccttttgggtacttt 623 Query: 535 tggagaaccctaactttgccacatgcaag 563 ||||| || | || ||||||||||||||| Sbjct: 622 tggagcacacgaaatttgccacatgcaag 594
>ref|XM_420335.1| PREDICTED: Gallus gallus similar to cullin 4B (LOC422364), mRNA Length = 3015 Score = 65.9 bits (33), Expect = 1e-07 Identities = 96/117 (82%) Strand = Plus / Minus Query: 325 agtgttttcctcgtcttcataattcgaactatggctgcatcaacctgatactgacgatct 384 |||||||| | | |||||||||||||||| || || ||||||| ||| || || || || Sbjct: 2870 agtgtttttcgcatcttcataattcgaacaatagcggcatcaatctggtattgccggtcc 2811 Query: 385 tgaaatactctctcagtggtgcttgtgttttcttctactgtttccttcatctgaatt 441 || ||||||||||| || ||||||| | ||| ||||| ||||| |||||||||||| Sbjct: 2810 tggaatactctctctgtagtgcttgcctgttcctctaccgtttctttcatctgaatt 2754
>ref|NM_001040124.1| Felis catus cullin 4BY (CUL4BY), mRNA Length = 2775 Score = 65.9 bits (33), Expect = 1e-07 Identities = 69/81 (85%) Strand = Plus / Minus Query: 317 tgtggctgagtgttttcctcgtcttcataattcgaactatggctgcatcaacctgatact 376 ||||||| |||||||||||| |||||||||| ||||| || || ||||||| |||||| Sbjct: 2306 tgtggctaagtgttttcctcatcttcataatgcgaacaattgcagcatcaatctgatatc 2247 Query: 377 gacgatcttgaaatactctct 397 | |||||||| || ||||||| Sbjct: 2246 gtcgatcttggaaaactctct 2226
>gb|DQ329523.1| Felis catus chromosome Y CUL4BY mRNA, complete cds Length = 2775 Score = 65.9 bits (33), Expect = 1e-07 Identities = 69/81 (85%) Strand = Plus / Minus Query: 317 tgtggctgagtgttttcctcgtcttcataattcgaactatggctgcatcaacctgatact 376 ||||||| |||||||||||| |||||||||| ||||| || || ||||||| |||||| Sbjct: 2306 tgtggctaagtgttttcctcatcttcataatgcgaacaattgcagcatcaatctgatatc 2247 Query: 377 gacgatcttgaaatactctct 397 | |||||||| || ||||||| Sbjct: 2246 gtcgatcttggaaaactctct 2226
>dbj|AB071052.1| Macaca fascicularis testis cDNA clone:QtsA-14268, similar to human cullin 4B(CUL4B), mRNA, NM_003588.2 Length = 3081 Score = 65.9 bits (33), Expect = 1e-07 Identities = 99/121 (81%) Strand = Plus / Minus Query: 317 tgtggctgagtgttttcctcgtcttcataattcgaactatggctgcatcaacctgatact 376 ||||||| ||||| || ||| |||||||||||||||| || || ||||||| ||||| | Sbjct: 2963 tgtggctaagtgtctttctcatcttcataattcgaacaattgcagcatcaatttgatatt 2904 Query: 377 gacgatcttgaaatactctctcagtggtgcttgtgttttcttctactgtttccttcatct 436 | | |||||||||||||| || || ||||||| | |||||| || ||||| ||||||| Sbjct: 2903 gtctgtcttgaaatactctttctgtagtgcttgcttgttcttcaaccgtttctttcatct 2844 Query: 437 g 437 | Sbjct: 2843 g 2843 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Minus Query: 538 agaaccctaactttgccacatgcaagtgactgcagtgttct 578 ||||| ||| |||||||||| || | ||||||||||||||| Sbjct: 2742 agaactctagctttgccacaggctaatgactgcagtgttct 2702
>gb|AC002476.1|AC002476 Human PAC clone RP1-318C15 from Xq23, complete sequence Length = 147102 Score = 65.9 bits (33), Expect = 1e-07 Identities = 78/93 (83%) Strand = Plus / Plus Query: 317 tgtggctgagtgttttcctcgtcttcataattcgaactatggctgcatcaacctgatact 376 ||||||| ||||| || ||| |||||||||||||||| || || ||||||| ||||||| Sbjct: 103987 tgtggctaagtgtctttctcatcttcataattcgaacaattgcagcatcaatttgatact 104046 Query: 377 gacgatcttgaaatactctctcagtggtgcttg 409 | | |||||||||||||| || || ||||||| Sbjct: 104047 gtctgtcttgaaatactctttctgtagtgcttg 104079 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Plus Query: 538 agaaccctaactttgccacatgcaagtgactgcagtgttct 578 ||||| ||| |||||||||| || | ||||||||||||||| Sbjct: 106375 agaactctagctttgccacaggctaatgactgcagtgttct 106415
>emb|AL513356.8| Mouse DNA sequence from clone RP23-193O17 on chromosome X, complete sequence Length = 216238 Score = 65.9 bits (33), Expect = 1e-07 Identities = 78/93 (83%) Strand = Plus / Plus Query: 317 tgtggctgagtgttttcctcgtcttcataattcgaactatggctgcatcaacctgatact 376 ||||||| |||||||| ||| |||||||||||||||| || || ||||||| || |||| Sbjct: 150433 tgtggctaagtgtttttctcatcttcataattcgaacgatcgcagcatcaatttggtact 150492 Query: 377 gacgatcttgaaatactctctcagtggtgcttg 409 | | |||||||||||||| || || ||||||| Sbjct: 150493 gtctgtcttgaaatactctttctgtagtgcttg 150525 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 538 agaaccctaactttgccacatgcaagtgactgcagtgttcttctcaattct 588 ||||| ||| |||||||||| || |||||||||||||||||||| |||||| Sbjct: 152333 agaactctagctttgccacaggctagtgactgcagtgttcttcttaattct 152383
>ref|XM_549223.2| PREDICTED: Canis familiaris similar to Cullin-4B (CUL-4B), transcript variant 1 (LOC492102), mRNA Length = 3760 Score = 61.9 bits (31), Expect = 2e-06 Identities = 67/79 (84%) Strand = Plus / Minus Query: 317 tgtggctgagtgttttcctcgtcttcataattcgaactatggctgcatcaacctgatact 376 ||||||| ||||| || ||| |||||||||||||||| || || ||||||| ||||||| Sbjct: 2901 tgtggctaagtgtctttctcatcttcataattcgaacaattgcagcatcaatttgatact 2842 Query: 377 gacgatcttgaaatactct 395 | | |||||||||||||| Sbjct: 2841 gtctgtcttgaaatactct 2823 Score = 54.0 bits (27), Expect = 6e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 538 agaaccctaactttgccacatgcaagtgactgcagtgttcttctcaattct 588 ||||| ||| |||||||||| || ||||||||||||||||| || |||||| Sbjct: 2680 agaactctagctttgccacaggccagtgactgcagtgttctccttaattct 2630
>ref|XM_859535.1| PREDICTED: Canis familiaris similar to Cullin-4B (CUL-4B), transcript variant 3 (LOC492102), mRNA Length = 3533 Score = 61.9 bits (31), Expect = 2e-06 Identities = 67/79 (84%) Strand = Plus / Minus Query: 317 tgtggctgagtgttttcctcgtcttcataattcgaactatggctgcatcaacctgatact 376 ||||||| ||||| || ||| |||||||||||||||| || || ||||||| ||||||| Sbjct: 2674 tgtggctaagtgtctttctcatcttcataattcgaacaattgcagcatcaatttgatact 2615 Query: 377 gacgatcttgaaatactct 395 | | |||||||||||||| Sbjct: 2614 gtctgtcttgaaatactct 2596 Score = 54.0 bits (27), Expect = 6e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 538 agaaccctaactttgccacatgcaagtgactgcagtgttcttctcaattct 588 ||||| ||| |||||||||| || ||||||||||||||||| || |||||| Sbjct: 2453 agaactctagctttgccacaggccagtgactgcagtgttctccttaattct 2403
>ref|XM_846813.1| PREDICTED: Canis familiaris similar to Cullin-4B (CUL-4B), transcript variant 2 (LOC492102), mRNA Length = 3718 Score = 61.9 bits (31), Expect = 2e-06 Identities = 67/79 (84%) Strand = Plus / Minus Query: 317 tgtggctgagtgttttcctcgtcttcataattcgaactatggctgcatcaacctgatact 376 ||||||| ||||| || ||| |||||||||||||||| || || ||||||| ||||||| Sbjct: 2859 tgtggctaagtgtctttctcatcttcataattcgaacaattgcagcatcaatttgatact 2800 Query: 377 gacgatcttgaaatactct 395 | | |||||||||||||| Sbjct: 2799 gtctgtcttgaaatactct 2781 Score = 54.0 bits (27), Expect = 6e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 538 agaaccctaactttgccacatgcaagtgactgcagtgttcttctcaattct 588 ||||| ||| |||||||||| || ||||||||||||||||| || |||||| Sbjct: 2638 agaactctagctttgccacaggccagtgactgcagtgttctccttaattct 2588
>ref|XM_416942.1| PREDICTED: Gallus gallus similar to cullin 4A (LOC418743), mRNA Length = 747 Score = 60.0 bits (30), Expect = 9e-06 Identities = 60/70 (85%) Strand = Plus / Minus Query: 338 tcttcataattcgaactatggctgcatcaacctgatactgacgatcttgaaatactctct 397 ||||||| ||||| || ||||| ||||||| ||||||||| | |||||||||||||| | Sbjct: 583 tcttcattattcgtacaatggcagcatcaatctgatactgtctgtcttgaaatactcttt 524 Query: 398 cagtggtgct 407 |||| ||||| Sbjct: 523 cagttgtgct 514
>gb|BC100244.1| Xenopus laevis cDNA clone MGC:115611 IMAGE:3746340, complete cds Length = 3857 Score = 60.0 bits (30), Expect = 9e-06 Identities = 90/110 (81%) Strand = Plus / Minus Query: 331 ttcctcgtcttcataattcgaactatggctgcatcaacctgatactgacgatcttgaaat 390 |||||| |||||||||| ||||| || |||||||||| || ||||| | || ||||| Sbjct: 2467 ttcctcatcttcataatccgaacaattgctgcatcaatttggtactgtctgtcctgaaaa 2408 Query: 391 actctctcagtggtgcttgtgttttcttctactgtttccttcatctgaat 440 ||||| || || ||||||| | |||||| || ||||||||||||||||| Sbjct: 2407 actctttctgtagtgcttgcttgttcttccaccgtttccttcatctgaat 2358
>ref|NM_001015893.1| Xenopus tropicalis hypothetical protein LOC548647 (LOC548647), mRNA Length = 3990 Score = 60.0 bits (30), Expect = 9e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 548 ctttgccacatgcaagtgactgcagtgttcttctcaattctttatcctcaataccagt 605 |||| ||||||||||| |||||||| |||| ||||| ||| ||||||||||| ||||| Sbjct: 2061 ctttaccacatgcaagggactgcagcgttcgtctcagttcattatcctcaattccagt 2004
>emb|CR761985.2| Xenopus tropicalis finished cDNA, clone TEgg006j10 Length = 3990 Score = 60.0 bits (30), Expect = 9e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 548 ctttgccacatgcaagtgactgcagtgttcttctcaattctttatcctcaataccagt 605 |||| ||||||||||| |||||||| |||| ||||| ||| ||||||||||| ||||| Sbjct: 2061 ctttaccacatgcaagggactgcagcgttcgtctcagttcattatcctcaattccagt 2004
>gb|AC163704.4| Gallus gallus BAC clone CH261-114A20 from chromosome ul, complete sequence Length = 198816 Score = 60.0 bits (30), Expect = 9e-06 Identities = 60/70 (85%) Strand = Plus / Plus Query: 338 tcttcataattcgaactatggctgcatcaacctgatactgacgatcttgaaatactctct 397 ||||||| ||||| || ||||| ||||||| ||||||||| | |||||||||||||| | Sbjct: 27983 tcttcattattcgtacaatggcagcatcaatctgatactgtctgtcttgaaatactcttt 28042 Query: 398 cagtggtgct 407 |||| ||||| Sbjct: 28043 cagttgtgct 28052
>ref|XM_509759.1| PREDICTED: Pan troglodytes similar to cullin 4A (LOC452694), mRNA Length = 1514 Score = 50.1 bits (25), Expect = 0.009 Identities = 67/81 (82%) Strand = Plus / Minus Query: 361 gcatcaacctgatactgacgatcttgaaatactctctcagtggtgcttgtgttttcttct 420 ||||||| |||||| || | ||| ||||| ||||||||||||||||| | ||| || Sbjct: 1379 gcatcaatctgatattgtctatcctgaaacactctctcagtggtgctaacctgttcctca 1320 Query: 421 actgtttccttcatctgaatt 441 || |||||||||||||||||| Sbjct: 1319 acagtttccttcatctgaatt 1299 Score = 42.1 bits (21), Expect = 2.1 Identities = 42/49 (85%) Strand = Plus / Minus Query: 548 ctttgccacatgcaagtgactgcagtgttcttctcaattctttatcctc 596 |||||||||| || ||||||||||| ||||| | |||||| ||||||| Sbjct: 1192 ctttgccacaggccagtgactgcagcgttctgcgcaattcactatcctc 1144
>ref|NM_001008895.1| Homo sapiens cullin 4A (CUL4A), transcript variant 1, mRNA Length = 3797 Score = 50.1 bits (25), Expect = 0.009 Identities = 67/81 (82%) Strand = Plus / Minus Query: 361 gcatcaacctgatactgacgatcttgaaatactctctcagtggtgcttgtgttttcttct 420 ||||||| |||||| || | ||| ||||| ||||||||||||||||| | ||| || Sbjct: 2104 gcatcaatctgatattgtctatcctgaaacactctctcagtggtgctaacctgttcctca 2045 Query: 421 actgtttccttcatctgaatt 441 || |||||||||||||||||| Sbjct: 2044 acagtttccttcatctgaatt 2024
>ref|NM_003589.2| Homo sapiens cullin 4A (CUL4A), transcript variant 2, mRNA Length = 3735 Score = 50.1 bits (25), Expect = 0.009 Identities = 67/81 (82%) Strand = Plus / Minus Query: 361 gcatcaacctgatactgacgatcttgaaatactctctcagtggtgcttgtgttttcttct 420 ||||||| |||||| || | ||| ||||| ||||||||||||||||| | ||| || Sbjct: 2042 gcatcaatctgatattgtctatcctgaaacactctctcagtggtgctaacctgttcctca 1983 Query: 421 actgtttccttcatctgaatt 441 || |||||||||||||||||| Sbjct: 1982 acagtttccttcatctgaatt 1962
>gb|AY365124.1| Homo sapiens cullin 4A (CUL4A) mRNA, complete cds Length = 2280 Score = 50.1 bits (25), Expect = 0.009 Identities = 67/81 (82%) Strand = Plus / Minus Query: 361 gcatcaacctgatactgacgatcttgaaatactctctcagtggtgcttgtgttttcttct 420 ||||||| |||||| || | ||| ||||| ||||||||||||||||| | ||| || Sbjct: 2093 gcatcaatctgatattgtctatcctgaaacactctctcagtggtgctaacctgttcctca 2034 Query: 421 actgtttccttcatctgaatt 441 || |||||||||||||||||| Sbjct: 2033 acagtttccttcatctgaatt 2013
>gb|BT007619.1| Synthetic construct Homo sapiens cullin 4A mRNA, partial cds Length = 1980 Score = 50.1 bits (25), Expect = 0.009 Identities = 67/81 (82%) Strand = Plus / Minus Query: 361 gcatcaacctgatactgacgatcttgaaatactctctcagtggtgcttgtgttttcttct 420 ||||||| |||||| || | ||| ||||| ||||||||||||||||| | ||| || Sbjct: 1793 gcatcaatctgatattgtctatcctgaaacactctctcagtggtgctaacctgttcctca 1734 Query: 421 actgtttccttcatctgaatt 441 || |||||||||||||||||| Sbjct: 1733 acagtttccttcatctgaatt 1713
>emb|CR603374.1| full-length cDNA clone CS0DM013YL09 of Fetal liver of Homo sapiens (human) Length = 2266 Score = 50.1 bits (25), Expect = 0.009 Identities = 67/81 (82%) Strand = Plus / Minus Query: 361 gcatcaacctgatactgacgatcttgaaatactctctcagtggtgcttgtgttttcttct 420 ||||||| |||||| || | ||| ||||| ||||||||||||||||| | ||| || Sbjct: 830 gcatcaatctgatattgtctatcctgaaacactctctcagtggtgctaacctgttcctca 771 Query: 421 actgtttccttcatctgaatt 441 || |||||||||||||||||| Sbjct: 770 acagtttccttcatctgaatt 750
>dbj|AB178950.1| Homo sapiens CUL4A mRNA for cullin-4A, complete cds Length = 2280 Score = 50.1 bits (25), Expect = 0.009 Identities = 67/81 (82%) Strand = Plus / Minus Query: 361 gcatcaacctgatactgacgatcttgaaatactctctcagtggtgcttgtgttttcttct 420 ||||||| |||||| || | ||| ||||| ||||||||||||||||| | ||| || Sbjct: 2093 gcatcaatctgatattgtctatcctgaaacactctctcagtggtgctaacctgttcctca 2034 Query: 421 actgtttccttcatctgaatt 441 || |||||||||||||||||| Sbjct: 2033 acagtttccttcatctgaatt 2013
>gb|AY892461.1| Synthetic construct Homo sapiens clone FLH024180.01L cullin 4A (CUL4A) mRNA, partial cds Length = 1980 Score = 50.1 bits (25), Expect = 0.009 Identities = 67/81 (82%) Strand = Plus / Minus Query: 361 gcatcaacctgatactgacgatcttgaaatactctctcagtggtgcttgtgttttcttct 420 ||||||| |||||| || | ||| ||||| ||||||||||||||||| | ||| || Sbjct: 1793 gcatcaatctgatattgtctatcctgaaacactctctcagtggtgctaacctgttcctca 1734 Query: 421 actgtttccttcatctgaatt 441 || |||||||||||||||||| Sbjct: 1733 acagtttccttcatctgaatt 1713
>gb|BC008308.1| Homo sapiens cullin 4A, transcript variant 1, mRNA (cDNA clone MGC:15238 IMAGE:3537176), complete cds Length = 3269 Score = 50.1 bits (25), Expect = 0.009 Identities = 67/81 (82%) Strand = Plus / Minus Query: 361 gcatcaacctgatactgacgatcttgaaatactctctcagtggtgcttgtgttttcttct 420 ||||||| |||||| || | ||| ||||| ||||||||||||||||| | ||| || Sbjct: 2104 gcatcaatctgatattgtctatcctgaaacactctctcagtggtgctaacctgttcctca 2045 Query: 421 actgtttccttcatctgaatt 441 || |||||||||||||||||| Sbjct: 2044 acagtttccttcatctgaatt 2024
>gb|AF077188.1|AF077188 Homo sapiens cullin 4A (CUL4A) mRNA, complete cds Length = 3643 Score = 50.1 bits (25), Expect = 0.009 Identities = 67/81 (82%) Strand = Plus / Minus Query: 361 gcatcaacctgatactgacgatcttgaaatactctctcagtggtgcttgtgttttcttct 420 ||||||| |||||| || | ||| ||||| ||||||||||||||||| | ||| || Sbjct: 1953 gcatcaatctgatattgtctatcctgaaacactctctcagtggtgctaacctgttcctca 1894 Query: 421 actgtttccttcatctgaatt 441 || |||||||||||||||||| Sbjct: 1893 acagtttccttcatctgaatt 1873
>emb|AL833355.1|HSM804668 Homo sapiens mRNA; cDNA DKFZp686N0735 (from clone DKFZp686N0735) Length = 3645 Score = 50.1 bits (25), Expect = 0.009 Identities = 67/81 (82%) Strand = Plus / Minus Query: 361 gcatcaacctgatactgacgatcttgaaatactctctcagtggtgcttgtgttttcttct 420 ||||||| |||||| || | ||| ||||| ||||||||||||||||| | ||| || Sbjct: 1980 gcatcaatctgatattgtctatcctgaaacactctctcagtggtgctaacctgttcctca 1921 Query: 421 actgtttccttcatctgaatt 441 || |||||||||||||||||| Sbjct: 1920 acagtttccttcatctgaatt 1900
>dbj|AB012193.1| Homo sapiens mRNA for cullin-4A, partial cds Length = 1577 Score = 50.1 bits (25), Expect = 0.009 Identities = 67/81 (82%) Strand = Plus / Minus Query: 361 gcatcaacctgatactgacgatcttgaaatactctctcagtggtgcttgtgttttcttct 420 ||||||| |||||| || | ||| ||||| ||||||||||||||||| | ||| || Sbjct: 1390 gcatcaatctgatattgtctatcctgaaacactctctcagtggtgctaacctgttcctca 1331 Query: 421 actgtttccttcatctgaatt 441 || |||||||||||||||||| Sbjct: 1330 acagtttccttcatctgaatt 1310
>gb|BC054607.1| Danio rerio cullin 4A, mRNA (cDNA clone MGC:64071 IMAGE:6794393), complete cds Length = 3208 Score = 48.1 bits (24), Expect = 0.034 Identities = 27/28 (96%) Strand = Plus / Minus Query: 317 tgtggctgagtgttttcctcgtcttcat 344 |||||||||||||||||||| ||||||| Sbjct: 2333 tgtggctgagtgttttcctcatcttcat 2306
>gb|DQ329524.1| Felis catus chromosome X CUL4BX mRNA, complete cds Length = 2741 Score = 48.1 bits (24), Expect = 0.034 Identities = 57/68 (83%) Strand = Plus / Minus Query: 538 agaaccctaactttgccacatgcaagtgactgcagtgttcttctcaattctttatcctca 597 ||||| ||| |||||||||| || | ||||||||||||||| || |||||| |||||| Sbjct: 2291 agaactctagctttgccacaggccaatgactgcagtgttctccttaattctccatcctct 2232 Query: 598 ataccagt 605 || ||||| Sbjct: 2231 attccagt 2224 Score = 42.1 bits (21), Expect = 2.1 Identities = 96/121 (79%) Strand = Plus / Minus Query: 317 tgtggctgagtgttttcctcgtcttcataattcgaactatggctgcatcaacctgatact 376 ||||||| || || || ||| ||||||| |||||||| || || ||||||| || |||| Sbjct: 2512 tgtggctaagcgtctttctcatcttcatgattcgaacaattgcagcatcaatttggtact 2453 Query: 377 gacgatcttgaaatactctctcagtggtgcttgtgttttcttctactgtttccttcatct 436 | | || ||||||||||| || || ||||||| | |||||| || ||||| ||||||| Sbjct: 2452 gtctgtcctgaaatactctttctgtagtgcttgcttgttcttcaaccgtttctttcatct 2393 Query: 437 g 437 | Sbjct: 2392 g 2392
>ref|NM_201027.1| Danio rerio cullin 4A (cul4a), mRNA Length = 3208 Score = 48.1 bits (24), Expect = 0.034 Identities = 27/28 (96%) Strand = Plus / Minus Query: 317 tgtggctgagtgttttcctcgtcttcat 344 |||||||||||||||||||| ||||||| Sbjct: 2333 tgtggctgagtgttttcctcatcttcat 2306
>emb|AL136221.38| Human DNA sequence from clone RP11-391H12 on chromosome 13 Contains the CUL4A gene for cullin 4A, the LAMP1 gene for lysosomal-associated membrane protein 1, the GRTP1 gene for growth hormone regulated TBC protein 1, a novel gene, the 5' end of a novel gene (FLJ11305) an LDHB (lactate dehydrogenase B) pseudogene and six CpG islands, complete sequence Length = 188896 Score = 46.1 bits (23), Expect = 0.14 Identities = 41/47 (87%) Strand = Plus / Minus Query: 361 gcatcaacctgatactgacgatcttgaaatactctctcagtggtgct 407 ||||||| |||||| || | ||| ||||| ||||||||||||||||| Sbjct: 52478 gcatcaatctgatattgtctatcctgaaacactctctcagtggtgct 52432
>gb|AC163765.3| Pan troglodytes BAC clone CH251-175G24 from chromosome unknown, complete sequence Length = 196942 Score = 46.1 bits (23), Expect = 0.14 Identities = 41/47 (87%) Strand = Plus / Plus Query: 361 gcatcaacctgatactgacgatcttgaaatactctctcagtggtgct 407 ||||||| |||||| || | ||| ||||| ||||||||||||||||| Sbjct: 59678 gcatcaatctgatattgtctatcctgaaacactctctcagtggtgct 59724 Score = 42.1 bits (21), Expect = 2.1 Identities = 42/49 (85%) Strand = Plus / Plus Query: 548 ctttgccacatgcaagtgactgcagtgttcttctcaattctttatcctc 596 |||||||||| || ||||||||||| ||||| | |||||| ||||||| Sbjct: 65349 ctttgccacaggccagtgactgcagcgttctgcgcaattcactatcctc 65397
>gb|U58090.1|HSU58090 Human Hs-cul-4A mRNA, partial cds Length = 1630 Score = 46.1 bits (23), Expect = 0.14 Identities = 41/47 (87%) Strand = Plus / Minus Query: 361 gcatcaacctgatactgacgatcttgaaatactctctcagtggtgct 407 ||||||| |||||| || | ||| ||||| ||||||||||||||||| Sbjct: 1080 gcatcaatctgatattgtctatcctgaaacactctctcagtggtgct 1034
>emb|AL731732.15| Mouse DNA sequence from clone RP23-100F3 on chromosome X, complete sequence Length = 230674 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Minus Query: 414 ttcttctactgtttccttcatctgaat 440 ||||| ||||||||||||||||||||| Sbjct: 224353 ttcttttactgtttccttcatctgaat 224327
>emb|BX571693.1| Carp DNA sequence from clone carpf-GC2H, complete sequence Length = 34667 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 133 aataagattaacatgacatctc 154 |||||||||||||||||||||| Sbjct: 8561 aataagattaacatgacatctc 8582
>dbj|AB025620.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MDE13 Length = 14139 Score = 44.1 bits (22), Expect = 0.53 Identities = 61/74 (82%) Strand = Plus / Plus Query: 292 tggaaaagctcagttattagaagggtgtggctgagtgttttcctcgtcttcataattcga 351 ||||| |||||||| |||||||| || ||||| | ||| || ||||||||||| ||| Sbjct: 5044 tggaagagctcagtgattagaagagtatggctcaagacttttcttgtcttcataatacga 5103 Query: 352 actatggctgcatc 365 || ||||||||||| Sbjct: 5104 acaatggctgcatc 5117 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 176 aagccagataattgtatatctgggggtt 203 |||| ||||||||||||||||| ||||| Sbjct: 4737 aagcaagataattgtatatctgagggtt 4764
>ref|XM_521243.1| PREDICTED: Pan troglodytes similar to cullin 4B; Cullin-4B (LOC465835), mRNA Length = 2463 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Minus Query: 538 agaaccctaactttgccacatgcaagtgactgcagtgttct 578 ||||| ||| |||||||||| || | ||||||||||||||| Sbjct: 2252 agaactctagctttgccacaggctaatgactgcagtgttct 2212
>gb|AC154384.2| Mus musculus BAC clone RP23-39K21 from chromosome 14, complete sequence Length = 242114 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 578 ttctcaattctttatcctcaa 598 ||||||||||||||||||||| Sbjct: 201053 ttctcaattctttatcctcaa 201033
>emb|CR391935.9| Zebrafish DNA sequence from clone DKEY-256K13 in linkage group 23, complete sequence Length = 197191 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 395 tctcagtggtgcttgtgtttt 415 ||||||||||||||||||||| Sbjct: 7005 tctcagtggtgcttgtgtttt 7025
>gb|AC103853.2| Homo sapiens chromosome 8, clone RP11-642D21, complete sequence Length = 178736 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 409 gtgttttcttctactgtttccttca 433 |||||||||||||| |||||||||| Sbjct: 2821 gtgttttcttctacggtttccttca 2845
>emb|BX469903.9| Zebrafish DNA sequence from clone CH211-46H12 in linkage group 23, complete sequence Length = 175747 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 395 tctcagtggtgcttgtgtttt 415 ||||||||||||||||||||| Sbjct: 37620 tctcagtggtgcttgtgtttt 37640
>gb|AC090802.6| Homo sapiens chromosome 8, clone RP11-152P17, complete sequence Length = 162549 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 409 gtgttttcttctactgtttccttca 433 |||||||||||||| |||||||||| Sbjct: 18690 gtgttttcttctacggtttccttca 18666
>gb|AY051648.1| Drosophila melanogaster GM14815 full length cDNA Length = 3314 Score = 42.1 bits (21), Expect = 2.1 Identities = 45/53 (84%) Strand = Plus / Minus Query: 340 ttcataattcgaactatggctgcatcaacctgatactgacgatcttgaaatac 392 |||||||| || || || || ||||||| |||||||||||||| |||||||| Sbjct: 2640 ttcataatgcgcacaatagccgcatcaatttgatactgacgatcctgaaatac 2588
>gb|AF064190.1| Homo sapiens beta-globin locus control region, 5' sequence Length = 8137 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 gccagataattgtatatctg 197 |||||||||||||||||||| Sbjct: 778 gccagataattgtatatctg 759
>gb|AC164079.11| Mus musculus chromosome 1, clone RP23-15E12, complete sequence Length = 215135 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 404 tgcttgtgttttcttctact 423 |||||||||||||||||||| Sbjct: 29154 tgcttgtgttttcttctact 29135
>gb|AC162176.2| Mus musculus BAC clone RP24-446P15 from chromosome 9, complete sequence Length = 204098 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 aagctcagttattagaaggg 316 |||||||||||||||||||| Sbjct: 19088 aagctcagttattagaaggg 19107
>gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome Length = 4222334 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 282 cttaagctgctggaaaagct 301 |||||||||||||||||||| Sbjct: 3967226 cttaagctgctggaaaagct 3967207
>gb|AC166051.5| Mus musculus BAC clone RP24-166B2 from chromosome 9, complete sequence Length = 152610 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 aagctcagttattagaaggg 316 |||||||||||||||||||| Sbjct: 52650 aagctcagttattagaaggg 52669
>gb|AC111064.11| Mus musculus chromosome 1, clone RP23-245H20, complete sequence Length = 150336 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 412 ttttcttctactgtttcctt 431 |||||||||||||||||||| Sbjct: 3393 ttttcttctactgtttcctt 3374
>gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome Length = 4222645 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 282 cttaagctgctggaaaagct 301 |||||||||||||||||||| Sbjct: 3967394 cttaagctgctggaaaagct 3967375
>gb|AE006383.1| Lactococcus lactis subsp. lactis IL1403 section 145 of 218 of the complete genome Length = 11001 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 412 ttttcttctactgtttcctt 431 |||||||||||||||||||| Sbjct: 2890 ttttcttctactgtttcctt 2909
>gb|AC123800.4| Mus musculus BAC clone RP24-343K18 from chromosome 1, complete sequence Length = 177367 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 412 ttttcttctactgtttcctt 431 |||||||||||||||||||| Sbjct: 52170 ttttcttctactgtttcctt 52189
>gb|AC138228.10| Mus musculus chromosome 17, clone RP23-304G12, complete sequence Length = 225739 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 131 aaaataagattaacatgacatctc 154 |||||||||||||||| ||||||| Sbjct: 64999 aaaataagattaacataacatctc 65022
>gb|AF038608.1| Caenorhabditis elegans cosmid C09G12, complete sequence Length = 41519 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 294 gaaaagctcagttattagaagggt 317 ||||||||||||||| |||||||| Sbjct: 17134 gaaaagctcagttataagaagggt 17111
>ref|NG_000007.3| Homo sapiens beta globin region (HBB@) on chromosome 11 Length = 81706 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 gccagataattgtatatctg 197 |||||||||||||||||||| Sbjct: 779 gccagataattgtatatctg 760
>emb|AL133211.9| Human DNA sequence from clone RP3-486L4 on chromosome 6q14.3-16.1 Contains the 3' end of the ORC3L gene for origin recognition complex, subunit 3-like (yeast), a novel gene and parts of 2 novel genes, complete sequence Length = 82486 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 459 ataaaggggagcactaaaat 478 |||||||||||||||||||| Sbjct: 23004 ataaaggggagcactaaaat 23023
>gb|BC044393.1| Danio rerio chaperonin containing TCP1, subunit 6A (zeta 1), mRNA (cDNA clone MGC:55415 IMAGE:2639244), complete cds Length = 1916 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 244 tctattctcttcttcatgtc 263 |||||||||||||||||||| Sbjct: 723 tctattctcttcttcatgtc 704
>ref|NM_201290.1| Danio rerio chaperonin containing TCP1, subunit 6A (zeta 1) (cct6a), mRNA Length = 1916 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 244 tctattctcttcttcatgtc 263 |||||||||||||||||||| Sbjct: 723 tctattctcttcttcatgtc 704
>emb|BX511190.8| Zebrafish DNA sequence from clone RP71-80D18 in linkage group 5, complete sequence Length = 156408 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 566 actgcagtgttcttctcaattctt 589 |||||||||| ||||||||||||| Sbjct: 68241 actgcagtgtgcttctcaattctt 68264
>emb|BX510995.11| Zebrafish DNA sequence from clone CH211-57P8 in linkage group 14, complete sequence Length = 169766 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 tgctggaaaagctcagttat 308 |||||||||||||||||||| Sbjct: 133872 tgctggaaaagctcagttat 133853
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 294 gaaaagctcagttattagaa 313 |||||||||||||||||||| Sbjct: 14256644 gaaaagctcagttattagaa 14256663
>gb|AC155811.2| Mus musculus BAC clone RP24-185C13 from chromosome 12, complete sequence Length = 152790 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 468 agcactaaaatcttcattaa 487 |||||||||||||||||||| Sbjct: 126044 agcactaaaatcttcattaa 126025
>gb|AC011005.7|AC011005 Homo sapiens chromosome 7 clone RP11-286H14, complete sequence Length = 217615 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 taggctctctattctcttct 256 |||||||||||||||||||| Sbjct: 108789 taggctctctattctcttct 108808
>gb|AF137396.2|AF137396 Homo sapiens ubiquilin 3, HOR 5'Beta14, HOR5'Beta13, HOR5'Beta12, and HOR5'Beta11 genes, complete cds; HOR 5'Beta10 and HOR5'Beta9 pseudogenes, complete sequence; HOR5'Beta8 and HOR5'Beta7 genes, complete cds; CHR11ORF1 and amphiphysin pseudogenes, complete sequence; HOR5'Beta6 and HOR5'Beta5 genes, complete cds; HOR5'Beta4 pseudogene, complete sequence; HOR 5'Beta3 genes, complete cds; HOR5'Beta2 pseudogene, complete sequence; and HOR 5'Beta1 gene, complete cds Length = 219955 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 gccagataattgtatatctg 197 |||||||||||||||||||| Sbjct: 215896 gccagataattgtatatctg 215877
>gb|AC083866.2|AC083866 Homo sapiens chromosome 7 clone RP11-702D16, complete sequence Length = 170528 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 taggctctctattctcttct 256 |||||||||||||||||||| Sbjct: 32665 taggctctctattctcttct 32684
>gb|AC104389.8| Homo sapiens chromosome 11, clone CTD-2643I7, complete sequence Length = 207343 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 178 gccagataattgtatatctg 197 |||||||||||||||||||| Sbjct: 99177 gccagataattgtatatctg 99196
>dbj|AP005493.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0078D03 Length = 176593 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 294 gaaaagctcagttattagaa 313 |||||||||||||||||||| Sbjct: 160933 gaaaagctcagttattagaa 160952
>dbj|AP004637.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0703C03 Length = 162620 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 294 gaaaagctcagttattagaa 313 |||||||||||||||||||| Sbjct: 72200 gaaaagctcagttattagaa 72219
>emb|AL132862.1|CEY73F8A Caenorhabditis elegans YAC Y73F8A, complete sequence Length = 322774 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 405 gcttgtgttttcttctactgtttc 428 |||| ||||||||||||||||||| Sbjct: 315632 gcttatgttttcttctactgtttc 315609
>gb|AF149711.1|AF149711 Pongo pygmaeus sequence in the 5' boundary area of the beta-globin locus control region Length = 332 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 178 gccagataattgtatatctg 197 |||||||||||||||||||| Sbjct: 112 gccagataattgtatatctg 131
>dbj|AP000725.5| Homo sapiens genomic DNA, chromosome 11 clone:CMB9-2O12, complete sequence Length = 108449 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 476 aatcttcattaaatacgaat 495 |||||||||||||||||||| Sbjct: 83027 aatcttcattaaatacgaat 83046
>gb|AC006263.1|AC006263 Homo sapiens chromosome 17, clone hCIT.187_K_10, complete sequence Length = 94742 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 551 tgccacatgcaagtgactgc 570 |||||||||||||||||||| Sbjct: 37652 tgccacatgcaagtgactgc 37633
>emb|CT033797.5| Mouse DNA sequence from clone RP23-451J17 on chromosome 17, complete sequence Length = 177126 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 131 aaaataagattaacatgacatctc 154 |||||||||||||||| ||||||| Sbjct: 45 aaaataagattaacataacatctc 22
>gb|AC125369.4| Mus musculus BAC clone RP24-380D10 from 8, complete sequence Length = 169338 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 taggctctctattctcttct 256 |||||||||||||||||||| Sbjct: 55964 taggctctctattctcttct 55945
>gb|AC122504.4| Mus musculus BAC clone RP24-419J13 from 9, complete sequence Length = 178896 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 aagctcagttattagaaggg 316 |||||||||||||||||||| Sbjct: 57441 aagctcagttattagaaggg 57422
>gb|AC127582.4| Mus musculus BAC clone RP24-89J3 from 12, complete sequence Length = 217949 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 468 agcactaaaatcttcattaa 487 |||||||||||||||||||| Sbjct: 170884 agcactaaaatcttcattaa 170903
>gb|AC131750.3| Mus musculus BAC clone RP23-34F5 from 1, complete sequence Length = 190325 Score = 40.1 bits (20), Expect = 8.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 120 tttctcgcaataaaataagattaacatgacat 151 |||||| ||||||||||| ||||| ||||||| Sbjct: 161518 tttctctcaataaaataatattaaaatgacat 161549
>gb|BC071416.1| Danio rerio chaperonin containing TCP1, subunit 6A (zeta 1), mRNA (cDNA clone MGC:86744 IMAGE:6898644), complete cds Length = 1966 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 244 tctattctcttcttcatgtc 263 |||||||||||||||||||| Sbjct: 760 tctattctcttcttcatgtc 741
>emb|AL590991.14| Mouse DNA sequence from clone RP23-255N16 on chromosome 11, complete sequence Length = 194872 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 310 agaagggtgtggctgagtgt 329 |||||||||||||||||||| Sbjct: 103335 agaagggtgtggctgagtgt 103354 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,458,652 Number of Sequences: 3902068 Number of extensions: 5458652 Number of successful extensions: 102841 Number of sequences better than 10.0: 123 Number of HSP's better than 10.0 without gapping: 123 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 102462 Number of HSP's gapped (non-prelim): 371 length of query: 613 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 590 effective length of database: 17,143,297,704 effective search space: 10114545645360 effective search space used: 10114545645360 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)