ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd16c09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT018758.1| Zea mays clone EL01N0523F03.d mRNA sequence 121 3e-24
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 113 7e-22
3dbj|AP001073.1| Oryza sativa (japonica cultivar-group) genomic D... 113 7e-22
4dbj|AP000969.1| Oryza sativa (japonica cultivar-group) genomic D... 113 7e-22
5dbj|AK105874.1| Oryza sativa (japonica cultivar-group) cDNA clon... 113 7e-22
6dbj|AK073347.1| Oryza sativa (japonica cultivar-group) cDNA clon... 113 7e-22
7ref|NM_188033.1| Oryza sativa (japonica cultivar-group), Ozsa845... 109 1e-20
8gb|AY112058.1| Zea mays CL37599_1 mRNA sequence 96 2e-16
9gb|AC150889.3| Medicago truncatula chromosome 7 BAC clone mte1-6... 56 1e-04
10gb|AY085810.1| Arabidopsis thaliana clone 18436 mRNA, complete s... 48 0.032
11gb|AC079328.11| Homo sapiens chromosome 15, clone RP11-244F12, c... 42 2.0
12ref|XM_680149.1| PREDICTED: Danio rerio similar to putative prot... 42 2.0
13ref|XM_687353.1| PREDICTED: Danio rerio similar to MGC80777 prot... 42 2.0
14gb|AC087612.6| Homo sapiens chromosome 15, clone RP11-69G7, comp... 42 2.0
15ref|NM_115533.2| Arabidopsis thaliana unknown protein AT3G56740 ... 40 7.9
16gb|AC144938.3| Mus musculus BAC clone RP24-129H18 from chromosom... 40 7.9
17gb|AC133459.9| Mus musculus chromosome 12, clone RP23-383O15, co... 40 7.9
18ref|XM_535022.2| PREDICTED: Canis familiaris similar to actin-bi... 40 7.9
19ref|XM_859834.1| PREDICTED: Canis familiaris similar to actin-bi... 40 7.9
20ref|XM_859813.1| PREDICTED: Canis familiaris similar to actin-bi... 40 7.9
21ref|XM_859794.1| PREDICTED: Canis familiaris similar to actin-bi... 40 7.9
22emb|AL451069.34| Human DNA sequence from clone RP11-432J24 on ch... 40 7.9
23emb|AL450105.17| Human DNA sequence from clone RP11-519C17 on ch... 40 7.9
24emb|AL022153.1|HS23K20 Human DNA sequence from clone RP1-23K20 o... 40 7.9
25gb|AC032019.7| Homo sapiens chromosome 17, clone RP11-277J6, com... 40 7.9
26emb|AL390921.1|ATT8M16 Arabidopsis thaliana DNA chromosome 3, BA... 40 7.9
27emb|BX248512.14| Zebrafish DNA sequence from clone CH211-284D12 ... 40 7.9
28dbj|AP008934.1| Staphylococcus saprophyticus subsp. saprophyticu... 40 7.9
29gb|AC153142.3| Mus musculus BAC clone RP23-296H17 from chromosom... 40 7.9
30emb|BX822432.1|CNS0A61F Arabidopsis thaliana Full-length cDNA Co... 40 7.9
31emb|BX823927.1|CNS0A5G9 Arabidopsis thaliana Full-length cDNA Co... 40 7.9
32emb|BX824979.1|CNS0A4O2 Arabidopsis thaliana Full-length cDNA Co... 40 7.9
33gb|AC026203.3|AC026203 Homo sapiens chromosome 3 clone RP11-586C... 40 7.9
34gb|BT005215.1| Arabidopsis thaliana At3g56740 mRNA, complete cds 40 7.9
35gb|AC027033.3|AC027033 Arabidopsis thaliana chromosome 1 BAC F21... 40 7.9
36emb|AL831780.12| Mouse DNA sequence from clone RP23-394B8 on chr... 40 7.9
37dbj|AP000736.3| Arabidopsis thaliana genomic DNA, chromosome 3, ... 40 7.9
38gb|AC140376.3| Mus musculus BAC clone RP24-78P21 from 12, comple... 40 7.9
39emb|AL929247.5| Zebrafish DNA sequence from clone CH211-152J7 in... 40 7.9 
>gb|BT018758.1| Zea mays clone EL01N0523F03.d mRNA sequence
          Length = 1384

 Score =  121 bits (61), Expect = 3e-24
 Identities = 175/213 (82%)
 Strand = Plus / Minus

                                                                        
Query: 339  tcaatgagactgcgcttcaagtaggatgtttgtcgctacattgatatcatttctggctcg 398
            |||||||||||| ||||| ||||||||||| || || || ||||| |||||||| || | 
Sbjct: 1063 tcaatgagactgtgcttccagtaggatgttcgttgccacgttgatgtcatttctagccct 1004

                                                                        
Query: 399  catgagggcctgtctcgcagcattgctgtcaaagcccatcgataccagcatagcaatgga 458
            || ||| ||||| || ||   |||||  ||||||||||| || ||||||||||||| |||
Sbjct: 1003 cacgagtgcctgccttgcgttattgccatcaaagcccattgagaccagcatagcaacgga 944

                                                                        
Query: 459  ggactccgggggctccacaacaggagcaaacccagtagacggctggttctgaacagcacg 518
            |||||| || |||||||| | ||| ||||| ||||| || ||||| ||||||||||||||
Sbjct: 943  ggactctggaggctccacgataggtgcaaatccagttgatggctgattctgaacagcacg 884

                                             
Query: 519  gcctgtatgcgaaggcacatttccaacaagact 551
            |||| |||| || ||    ||||||||||||||
Sbjct: 883  gcctctatgggacggtgtgtttccaacaagact 851
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  113 bits (57), Expect = 7e-22
 Identities = 126/149 (84%)
 Strand = Plus / Minus

                                                                           
Query: 337     gctcaatgagactgcgcttcaagtaggatgtttgtcgctacattgatatcatttctggct 396
               |||||| ||| |||||||||||| |||||||| || ||    ||||| ||||||||||||
Sbjct: 9262857 gctcaacgagtctgcgcttcaaggaggatgttcgtggccgtgttgatgtcatttctggct 9262798

                                                                           
Query: 397     cgcatgagggcctgtctcgcagcattgctgtcaaagcccatcgataccagcatagcaatg 456
               ||||| || |||||||| |||||||| |  |||||||||||||| ||||||||||| || 
Sbjct: 9262797 cgcattagcgcctgtcttgcagcatttccatcaaagcccatcgaaaccagcatagcgatt 9262738

                                            
Query: 457     gaggactccgggggctccacaacaggagc 485
               || || || ||||||||||| ||||||||
Sbjct: 9262737 gaagattctgggggctccacgacaggagc 9262709



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 52/56 (92%)
 Strand = Plus / Minus

                                                                       
Query: 15      aattttacactatgattgaaatgtttatgtatcacctatcctacaagctgaatttg 70
               |||||||||||||||||  ||||||||| ||||| |||||||||||||||||||||
Sbjct: 9263193 aattttacactatgattccaatgtttatatatcatctatcctacaagctgaatttg 9263138
to top
>dbj|AP001073.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0667A10
          Length = 152237

 Score =  113 bits (57), Expect = 7e-22
 Identities = 126/149 (84%)
 Strand = Plus / Minus

                                                                         
Query: 337   gctcaatgagactgcgcttcaagtaggatgtttgtcgctacattgatatcatttctggct 396
             |||||| ||| |||||||||||| |||||||| || ||    ||||| ||||||||||||
Sbjct: 39451 gctcaacgagtctgcgcttcaaggaggatgttcgtggccgtgttgatgtcatttctggct 39392

                                                                         
Query: 397   cgcatgagggcctgtctcgcagcattgctgtcaaagcccatcgataccagcatagcaatg 456
             ||||| || |||||||| |||||||| |  |||||||||||||| ||||||||||| || 
Sbjct: 39391 cgcattagcgcctgtcttgcagcatttccatcaaagcccatcgaaaccagcatagcgatt 39332

                                          
Query: 457   gaggactccgggggctccacaacaggagc 485
             || || || ||||||||||| ||||||||
Sbjct: 39331 gaagattctgggggctccacgacaggagc 39303



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 52/56 (92%)
 Strand = Plus / Minus

                                                                     
Query: 15    aattttacactatgattgaaatgtttatgtatcacctatcctacaagctgaatttg 70
             |||||||||||||||||  ||||||||| ||||| |||||||||||||||||||||
Sbjct: 39787 aattttacactatgattccaatgtttatatatcatctatcctacaagctgaatttg 39732
to top
>dbj|AP000969.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              clone:P0011D01
          Length = 168655

 Score =  113 bits (57), Expect = 7e-22
 Identities = 126/149 (84%)
 Strand = Plus / Minus

                                                                          
Query: 337    gctcaatgagactgcgcttcaagtaggatgtttgtcgctacattgatatcatttctggct 396
              |||||| ||| |||||||||||| |||||||| || ||    ||||| ||||||||||||
Sbjct: 163239 gctcaacgagtctgcgcttcaaggaggatgttcgtggccgtgttgatgtcatttctggct 163180

                                                                          
Query: 397    cgcatgagggcctgtctcgcagcattgctgtcaaagcccatcgataccagcatagcaatg 456
              ||||| || |||||||| |||||||| |  |||||||||||||| ||||||||||| || 
Sbjct: 163179 cgcattagcgcctgtcttgcagcatttccatcaaagcccatcgaaaccagcatagcgatt 163120

                                           
Query: 457    gaggactccgggggctccacaacaggagc 485
              || || || ||||||||||| ||||||||
Sbjct: 163119 gaagattctgggggctccacgacaggagc 163091



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 52/56 (92%)
 Strand = Plus / Minus

                                                                      
Query: 15     aattttacactatgattgaaatgtttatgtatcacctatcctacaagctgaatttg 70
              |||||||||||||||||  ||||||||| ||||| |||||||||||||||||||||
Sbjct: 163575 aattttacactatgattccaatgtttatatatcatctatcctacaagctgaatttg 163520
to top
>dbj|AK105874.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-B06, full
            insert sequence
          Length = 1530

 Score =  113 bits (57), Expect = 7e-22
 Identities = 126/149 (84%)
 Strand = Plus / Minus

                                                                        
Query: 337  gctcaatgagactgcgcttcaagtaggatgtttgtcgctacattgatatcatttctggct 396
            |||||| ||| |||||||||||| |||||||| || ||    ||||| ||||||||||||
Sbjct: 1160 gctcaacgagtctgcgcttcaaggaggatgttcgtggccgtgttgatgtcatttctggct 1101

                                                                        
Query: 397  cgcatgagggcctgtctcgcagcattgctgtcaaagcccatcgataccagcatagcaatg 456
            ||||| || |||||||| |||||||| |  |||||||||||||| ||||||||||| || 
Sbjct: 1100 cgcattagcgcctgtcttgcagcatttccatcaaagcccatcgaaaccagcatagcgatt 1041

                                         
Query: 457  gaggactccgggggctccacaacaggagc 485
            || || || ||||||||||| ||||||||
Sbjct: 1040 gaagattctgggggctccacgacaggagc 1012



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 52/56 (92%)
 Strand = Plus / Minus

                                                                    
Query: 15   aattttacactatgattgaaatgtttatgtatcacctatcctacaagctgaatttg 70
            |||||||||||||||||  ||||||||| ||||| |||||||||||||||||||||
Sbjct: 1496 aattttacactatgattccaatgtttatatatcatctatcctacaagctgaatttg 1441
to top
>dbj|AK073347.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033024L23, full
            insert sequence
          Length = 1499

 Score =  113 bits (57), Expect = 7e-22
 Identities = 126/149 (84%)
 Strand = Plus / Minus

                                                                        
Query: 337  gctcaatgagactgcgcttcaagtaggatgtttgtcgctacattgatatcatttctggct 396
            |||||| ||| |||||||||||| |||||||| || ||    ||||| ||||||||||||
Sbjct: 1138 gctcaacgagtctgcgcttcaaggaggatgttcgtggccgtgttgatgtcatttctggct 1079

                                                                        
Query: 397  cgcatgagggcctgtctcgcagcattgctgtcaaagcccatcgataccagcatagcaatg 456
            ||||| || |||||||| |||||||| |  |||||||||||||| ||||||||||| || 
Sbjct: 1078 cgcattagcgcctgtcttgcagcatttccatcaaagcccatcgaaaccagcatagcgatt 1019

                                         
Query: 457  gaggactccgggggctccacaacaggagc 485
            || || || ||||||||||| ||||||||
Sbjct: 1018 gaagattctgggggctccacgacaggagc 990



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 52/56 (92%)
 Strand = Plus / Minus

                                                                    
Query: 15   aattttacactatgattgaaatgtttatgtatcacctatcctacaagctgaatttg 70
            |||||||||||||||||  ||||||||| ||||| |||||||||||||||||||||
Sbjct: 1474 aattttacactatgattccaatgtttatatatcatctatcctacaagctgaatttg 1419
to top
>ref|NM_188033.1| Oryza sativa (japonica cultivar-group), Ozsa8453 predicted mRNA
          Length = 879

 Score =  109 bits (55), Expect = 1e-20
 Identities = 124/147 (84%)
 Strand = Plus / Minus

                                                                       
Query: 339 tcaatgagactgcgcttcaagtaggatgtttgtcgctacattgatatcatttctggctcg 398
           |||| ||| |||||||||||| |||||||| || ||    ||||| ||||||||||||||
Sbjct: 879 tcaacgagtctgcgcttcaaggaggatgttcgtggccgtgttgatgtcatttctggctcg 820

                                                                       
Query: 399 catgagggcctgtctcgcagcattgctgtcaaagcccatcgataccagcatagcaatgga 458
           ||| || |||||||| |||||||| |  |||||||||||||| ||||||||||| || ||
Sbjct: 819 cattagcgcctgtcttgcagcatttccatcaaagcccatcgaaaccagcatagcgattga 760

                                      
Query: 459 ggactccgggggctccacaacaggagc 485
            || || ||||||||||| ||||||||
Sbjct: 759 agattctgggggctccacgacaggagc 733
to top
>gb|AY112058.1| Zea mays CL37599_1 mRNA sequence
          Length = 838

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 191/236 (80%), Gaps = 2/236 (0%)
 Strand = Plus / Plus

                                                                       
Query: 339 tcaatgagactgcgcttcaagtaggatgtttgtcgctacattgatatcatttctggctcg 398
           |||||||||||| ||||| ||||||||||| || || || ||||| |||||||| || | 
Sbjct: 243 tcaatgagactgtgcttccagtaggatgttcgttgccacgttgatgtcatttctagccct 302

                                                                       
Query: 399 catgagggcctgtctcgcagcattgctgtcaaagcccatcgataccagcatagcaatgga 458
           || ||| ||||| || ||   |||||  ||||||||||| || ||||||||||||| |||
Sbjct: 303 cacgagtgcctgccttgcgttattgccatcaaagcccattgagaccagcatagcaacgga 362

                                                                       
Query: 459 ggactccgggggctccacaacaggagcaaacccagtagacggctggttctgaacagc-ac 517
           |||||| || |||||||| | ||| ||||| ||||| || ||||| |||||| |||| ||
Sbjct: 363 ggactctggaggctccacgataggtgcaaatccagttgatggctgattctga-cagccac 421

                                                                   
Query: 518 ggcctgtatgcgaaggcacatttccaacaagacttcttgacggccgagatgagctt 573
           ||||| |||| || ||    |||||||||||||| || || || ||||||| ||||
Sbjct: 422 ggcctctatgggacggtgtgtttccaacaagactcctggaggggcgagatgtgctt 477
to top
>gb|AC150889.3| Medicago truncatula chromosome 7 BAC clone mte1-61j12, complete
             sequence
          Length = 116517

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 67/80 (83%)
 Strand = Plus / Plus

                                                                         
Query: 358   agtaggatgtttgtcgctacattgatatcatttctggctcgcatgagggcctgtctcgca 417
             ||||||||||||||||| ||||| |  |||||||||||  |||  ||||| ||||| |||
Sbjct: 29636 agtaggatgtttgtcgccacattcacgtcatttctggcctgcactagggcttgtctggca 29695

                                 
Query: 418   gcattgctgtcaaagcccat 437
             | ||| |||||||| |||||
Sbjct: 29696 gaattcctgtcaaatcccat 29715
to top
>gb|AY085810.1| Arabidopsis thaliana clone 18436 mRNA, complete sequence
          Length = 1393

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 81/100 (81%)
 Strand = Plus / Minus

                                                                        
Query: 346  gactgcgcttcaagtaggatgtttgtcgctacattgatatcatttctggctcgcatgagg 405
            ||||| ||||| || ||||||||||| ||  | |||| ||||||||||||  |||  || 
Sbjct: 1135 gactgtgcttcgagaaggatgtttgtggcggcgttgacatcatttctggcgtgcacaagc 1076

                                                    
Query: 406  gcctgtctcgcagcattgctgtcaaagcccatcgatacca 445
            ||||||||||| || || ||||| || ||||| |||||||
Sbjct: 1075 gcctgtctcgctgcgtttctgtcgaatcccattgatacca 1036
to top
>gb|AC079328.11| Homo sapiens chromosome 15, clone RP11-244F12, complete sequence
          Length = 179402

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 405    ggcctgtctcgcagcattgctgtca 429
              |||||||||| ||||||||||||||
Sbjct: 151438 ggcctgtctcccagcattgctgtca 151462
to top
>ref|XM_680149.1| PREDICTED: Danio rerio similar to putative protein derived from
           vestibule-1 (LOC557144), mRNA
          Length = 1185

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 407 cctgtctcgcagcattgctgt 427
           |||||||||||||||||||||
Sbjct: 675 cctgtctcgcagcattgctgt 695
to top
>ref|XM_687353.1| PREDICTED: Danio rerio similar to MGC80777 protein (LOC563993), mRNA
          Length = 3541

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 473  ccacaacaggagcaaacccag 493
            |||||||||||||||||||||
Sbjct: 2163 ccacaacaggagcaaacccag 2143
to top
>gb|AC087612.6| Homo sapiens chromosome 15, clone RP11-69G7, complete sequence
          Length = 145405

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 405    ggcctgtctcgcagcattgctgtca 429
              |||||||||| ||||||||||||||
Sbjct: 126689 ggcctgtctcccagcattgctgtca 126665
to top
>ref|NM_115533.2| Arabidopsis thaliana unknown protein AT3G56740 mRNA, complete cds
          Length = 1801

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 80/100 (80%)
 Strand = Plus / Minus

                                                                        
Query: 346  gactgcgcttcaagtaggatgtttgtcgctacattgatatcatttctggctcgcatgagg 405
            ||||| ||||| || ||||||||||| ||  | |||| |||||| |||||  |||  || 
Sbjct: 1135 gactgtgcttcgagaaggatgtttgtggcggcgttgacatcattcctggcgtgcacaagc 1076

                                                    
Query: 406  gcctgtctcgcagcattgctgtcaaagcccatcgatacca 445
            ||||||||||| || || ||||| || ||||| |||||||
Sbjct: 1075 gcctgtctcgctgcgtttctgtcgaatcccattgatacca 1036
to top
>gb|AC144938.3| Mus musculus BAC clone RP24-129H18 from chromosome 18, complete sequence
          Length = 207182

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 277    tcatgtccagatataaccag 296
              ||||||||||||||||||||
Sbjct: 152504 tcatgtccagatataaccag 152523
to top
>gb|AC133459.9| Mus musculus chromosome 12, clone RP23-383O15, complete sequence
          Length = 227171

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 174    ggagcatgttcacttttccaaacc 197
              |||||||||||| |||||||||||
Sbjct: 100903 ggagcatgttcatttttccaaacc 100880
to top
>ref|XM_535022.2| PREDICTED: Canis familiaris similar to actin-binding LIM protein 1
            isoform s, transcript variant 2 (LOC477828), mRNA
          Length = 6028

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 535  acatttccaacaagacttct 554
            ||||||||||||||||||||
Sbjct: 5984 acatttccaacaagacttct 5965
to top
>ref|XM_859834.1| PREDICTED: Canis familiaris similar to actin-binding LIM protein 1
            isoform s, transcript variant 5 (LOC477828), mRNA
          Length = 6076

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 535  acatttccaacaagacttct 554
            ||||||||||||||||||||
Sbjct: 6032 acatttccaacaagacttct 6013
to top
>ref|XM_859813.1| PREDICTED: Canis familiaris similar to actin-binding LIM protein 1
            isoform s, transcript variant 4 (LOC477828), mRNA
          Length = 5054

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 535  acatttccaacaagacttct 554
            ||||||||||||||||||||
Sbjct: 5010 acatttccaacaagacttct 4991
to top
>ref|XM_859794.1| PREDICTED: Canis familiaris similar to actin-binding LIM protein 1
            isoform s, transcript variant 3 (LOC477828), mRNA
          Length = 5824

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 535  acatttccaacaagacttct 554
            ||||||||||||||||||||
Sbjct: 5780 acatttccaacaagacttct 5761
to top
>emb|AL451069.34| Human DNA sequence from clone RP11-432J24 on chromosome 10 Contains the
              3' end of gene LOC170394, four novel genes, gene LOC170393,
              the 5' end of the INPP5A gene for inositol
              polyphosphate-5-phosphatase 40kDa and five CpG islands,
              complete sequence
          Length = 149579

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 310    atttatcagcaaagttgcag 329
              ||||||||||||||||||||
Sbjct: 108133 atttatcagcaaagttgcag 108114
to top
>emb|AL450105.17| Human DNA sequence from clone RP11-519C17 on chromosome 9 Contains the
             5' UTR of the gene for a novel protein similar to
             basonuclin (BNC) (FLJ34928) and a CpG island, complete
             sequence
          Length = 161506

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 23    actatgattgaaatgtttat 42
             ||||||||||||||||||||
Sbjct: 47912 actatgattgaaatgtttat 47893
to top
>emb|AL022153.1|HS23K20 Human DNA sequence from clone RP1-23K20 on chromosome Xq25-26.2 Contains
              the 5' end of the COVA1 gene for cytosolic ovarian
              carcinoma antigen 1, the 3' end of a novel gene and a CpG
              island, complete sequence
          Length = 126352

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 10     caaacaattttacactatga 29
              ||||||||||||||||||||
Sbjct: 105162 caaacaattttacactatga 105143
to top
>gb|AC032019.7| Homo sapiens chromosome 17, clone RP11-277J6, complete sequence
          Length = 172709

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 46    tcacctatcctacaagctga 65
             ||||||||||||||||||||
Sbjct: 20407 tcacctatcctacaagctga 20426
to top
>emb|AL390921.1|ATT8M16 Arabidopsis thaliana DNA chromosome 3, BAC clone T8M16
          Length = 107271

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 80/100 (80%)
 Strand = Plus / Minus

                                                                         
Query: 346   gactgcgcttcaagtaggatgtttgtcgctacattgatatcatttctggctcgcatgagg 405
             ||||| ||||| || ||||||||||| ||  | |||| |||||| |||||  |||  || 
Sbjct: 33799 gactgtgcttcgagaaggatgtttgtggcggcgttgacatcattcctggcgtgcacaagc 33740

                                                     
Query: 406   gcctgtctcgcagcattgctgtcaaagcccatcgatacca 445
             ||||||||||| || || ||||| || ||||| |||||||
Sbjct: 33739 gcctgtctcgctgcgtttctgtcgaatcccattgatacca 33700
to top
>emb|BX248512.14| Zebrafish DNA sequence from clone CH211-284D12 in linkage group 2,
              complete sequence
          Length = 146757

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 182    ttcacttttccaaaccatgg 201
              ||||||||||||||||||||
Sbjct: 145476 ttcacttttccaaaccatgg 145495
to top
>dbj|AP008934.1| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 DNA, complete
               genome
          Length = 2516575

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 25      tatgattgaaatgtttatgtatca 48
               |||||||||||||||| |||||||
Sbjct: 1916524 tatgattgaaatgtttctgtatca 1916547
to top
>gb|AC153142.3| Mus musculus BAC clone RP23-296H17 from chromosome 18, complete
             sequence
          Length = 212451

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 277   tcatgtccagatataaccag 296
             ||||||||||||||||||||
Sbjct: 10141 tcatgtccagatataaccag 10122
to top
>emb|BX822432.1|CNS0A61F Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB37ZH10 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1354

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 80/100 (80%)
 Strand = Plus / Minus

                                                                        
Query: 346  gactgcgcttcaagtaggatgtttgtcgctacattgatatcatttctggctcgcatgagg 405
            ||||| ||||| || ||||||||||| ||  | |||| |||||| |||||  |||  || 
Sbjct: 1097 gactgtgcttcgagaaggatgtttgtggcggcgttgacatcattcctggcgtgcacaagc 1038

                                                    
Query: 406  gcctgtctcgcagcattgctgtcaaagcccatcgatacca 445
            ||||||||||| || || ||||| || ||||| |||||||
Sbjct: 1037 gcctgtctcgctgcgtttctgtcgaatcccattgatacca 998
to top
>emb|BX823927.1|CNS0A5G9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS93ZE10 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1351

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 80/100 (80%)
 Strand = Plus / Minus

                                                                        
Query: 346  gactgcgcttcaagtaggatgtttgtcgctacattgatatcatttctggctcgcatgagg 405
            ||||| ||||| || ||||||||||| ||  | |||| |||||| |||||  |||  || 
Sbjct: 1070 gactgtgcttcgagaaggatgtttgtggcggcgttgacatcattcctggcgtgcacaagc 1011

                                                    
Query: 406  gcctgtctcgcagcattgctgtcaaagcccatcgatacca 445
            ||||||||||| || || ||||| || ||||| |||||||
Sbjct: 1010 gcctgtctcgctgcgtttctgtcgaatcccattgatacca 971
to top
>emb|BX824979.1|CNS0A4O2 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH87ZA11 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1350

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 80/100 (80%)
 Strand = Plus / Minus

                                                                        
Query: 346  gactgcgcttcaagtaggatgtttgtcgctacattgatatcatttctggctcgcatgagg 405
            ||||| ||||| || ||||||||||| ||  | |||| |||||| |||||  |||  || 
Sbjct: 1114 gactgtgcttcgagaaggatgtttgtggcggcgttgacatcattcctggcgtgcacaagc 1055

                                                    
Query: 406  gcctgtctcgcagcattgctgtcaaagcccatcgatacca 445
            ||||||||||| || || ||||| || ||||| |||||||
Sbjct: 1054 gcctgtctcgctgcgtttctgtcgaatcccattgatacca 1015
to top
>gb|AC026203.3|AC026203 Homo sapiens chromosome 3 clone RP11-586C2 map 3p, complete sequence
          Length = 181164

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 13    acaattttacactatgattgaaat 36
             |||||||| |||||||||||||||
Sbjct: 15034 acaattttccactatgattgaaat 15057
to top
>gb|BT005215.1| Arabidopsis thaliana At3g56740 mRNA, complete cds
          Length = 882

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 80/100 (80%)
 Strand = Plus / Minus

                                                                       
Query: 346 gactgcgcttcaagtaggatgtttgtcgctacattgatatcatttctggctcgcatgagg 405
           ||||| ||||| || ||||||||||| ||  | |||| |||||| |||||  |||  || 
Sbjct: 875 gactgtgcttcgagaaggatgtttgtggcggcgttgacatcattcctggcgtgcacaagc 816

                                                   
Query: 406 gcctgtctcgcagcattgctgtcaaagcccatcgatacca 445
           ||||||||||| || || ||||| || ||||| |||||||
Sbjct: 815 gcctgtctcgctgcgtttctgtcgaatcccattgatacca 776
to top
>gb|AC027033.3|AC027033 Arabidopsis thaliana chromosome 1 BAC F21N10 genomic sequence, complete
             sequence
          Length = 98017

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 527   gcgaaggcacatttccaaca 546
             ||||||||||||||||||||
Sbjct: 37496 gcgaaggcacatttccaaca 37515
to top
>emb|AL831780.12| Mouse DNA sequence from clone RP23-394B8 on chromosome 2, complete
              sequence
          Length = 173444

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 400    atgagggcctgtctcgcagcattgctgtcaaa 431
              |||| ||||||||| ||||| |||||||||||
Sbjct: 127504 atgaaggcctgtcttgcagccttgctgtcaaa 127473
to top
>dbj|AP000736.3| Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K17E7
          Length = 81580

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 527   gcgaaggcacatttccaaca 546
             ||||||||||||||||||||
Sbjct: 50605 gcgaaggcacatttccaaca 50624
to top
>gb|AC140376.3| Mus musculus BAC clone RP24-78P21 from 12, complete sequence
          Length = 246636

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 174    ggagcatgttcacttttccaaacc 197
              |||||||||||| |||||||||||
Sbjct: 218359 ggagcatgttcatttttccaaacc 218382
to top
>emb|AL929247.5| Zebrafish DNA sequence from clone CH211-152J7 in linkage group 3,
             complete sequence
          Length = 145564

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 182   ttcacttttccaaaccatgg 201
             ||||||||||||||||||||
Sbjct: 34409 ttcacttttccaaaccatgg 34390


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,636,568
Number of Sequences: 3902068
Number of extensions: 4636568
Number of successful extensions: 83537
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83415
Number of HSP's gapped (non-prelim): 114
length of query: 580
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 557
effective length of database: 17,143,297,704
effective search space: 9548816821128
effective search space used: 9548816821128
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top