Clone Information

BLAST Search Result

Clone Name	rbasd16c06
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	RBM12_MACMU (Q8SQ27) RNA-binding protein 12 (RNA-binding motif p...	54	7e-08
2	RBM12_HUMAN (Q9NTZ6) RNA-binding protein 12 (RNA-binding motif p...	54	7e-08
3	RBM12_MOUSE (Q8R4X3) RNA-binding protein 12 (RNA-binding motif p...	54	1e-07
4	HNRH3_HUMAN (P31942) Heterogeneous nuclear ribonucleoprotein H3 ...	54	1e-07
5	HNRPF_MACFA (Q60HC3) Heterogeneous nuclear ribonucleoprotein F (...	51	6e-07
6	HNRPF_HUMAN (P52597) Heterogeneous nuclear ribonucleoprotein F (...	51	6e-07
7	HNRH2_MOUSE (P70333) Heterogeneous nuclear ribonucleoprotein H' ...	51	6e-07
8	HNRH2_HUMAN (P55795) Heterogeneous nuclear ribonucleoprotein H' ...	51	6e-07
9	HNRH1_MOUSE (O35737) Heterogeneous nuclear ribonucleoprotein H (...	51	8e-07
10	HNRH1_HUMAN (P31943) Heterogeneous nuclear ribonucleoprotein H (...	51	8e-07
11	GRSF1_HUMAN (Q12849) G-rich sequence factor 1 (GRSF-1)	47	2e-05
12	GRSF1_MOUSE (Q8C5Q4) G-rich sequence factor 1 (GRSF-1)	47	2e-05
13	RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-bindin...	33	0.18
14	RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-bindin...	32	0.30
15	TRI47_MOUSE (Q8C0E3) Tripartite motif protein 47	32	0.30
16	SC24B_ARATH (Q9M081) Putative protein transport protein Sec24-li...	31	0.88
17	NUCL_MACFA (Q4R4J7) Nucleolin	30	2.0
18	AP2_ARATH (P47927) Floral homeotic protein APETALA2	30	2.0
19	NUCL_HUMAN (P19338) Nucleolin (Protein C23)	30	2.0
20	NUCL_MESAU (P08199) Nucleolin (Protein C23)	30	2.0
21	NUCL_PONPY (Q5RF26) Nucleolin	30	2.0
22	NUCL_XENLA (P20397) Nucleolin (Protein C23)	29	2.5
23	SCND2_HUMAN (Q9GZW5) SCAN domain-containing protein 2	29	2.5
24	NUCL_RAT (P13383) Nucleolin (Protein C23)	29	3.3
25	RAVR1_RAT (Q5XI28) Protein raver-1	28	4.3
26	IF2_PROMM (Q7V5M4) Translation initiation factor IF-2	28	4.3
27	ZN219_HUMAN (Q9P2Y4) Zinc finger protein 219	28	4.3
28	PCLO_CHICK (Q9PU36) Protein piccolo (Aczonin) (Fragment)	28	5.7
29	VGLD_PRVRI (P07645) Protein gp50	28	5.7
30	SDK1_HUMAN (Q7Z5N4) Protein sidekick-1 precursor	28	5.7
31	DEMA_MOUSE (Q9WV69) Dematin (Erythrocyte membrane protein band 4.9)	28	5.7
32	RAVR1_HUMAN (Q8IY67) Protein raver-1	28	5.7
33	ZN206_HUMAN (Q96SZ4) Zinc finger protein 206 (Zinc finger and SC...	28	5.7
34	YI31_AGRT7 (P05680) Insertion element IS136 hypothetical 16.9 kD...	28	5.7
35	NUCL_CHICK (P15771) Nucleolin (Protein C23)	28	5.7
36	CB025_GECJA (Q6DV04) Protein C2orf25 homolog, mitochondrial prec...	28	7.4
37	NANK_HAEIN (P44541) Putative N-acetylmannosamine kinase (EC 2.7....	28	7.4
38	SPTB1_HUMAN (P11277) Spectrin beta chain, erythrocyte (Beta-I sp...	28	7.4
39	VP40_ILTVT (P23984) Capsid protein P40 [Contains: Capsid protein...	28	7.4
40	DX26B_MOUSE (Q8BND4) Protein DDX26B	27	9.7
41	RAVR1_MOUSE (Q9CW46) Protein raver-1	27	9.7
42	MDC1_MACMU (Q5TM68) Mediator of DNA damage checkpoint protein 1	27	9.7
43	FA8A1_HUMAN (Q9UBU6) Protein FAM8A1 (Autosomal highly conserved ...	27	9.7

>RBM12_MACMU (Q8SQ27) RNA-binding protein 12 (RNA-binding motif protein 12)|
           (SH3/WW domain anchor protein in the nucleus) (SWAN)
          Length = 932

 Score = 54.3 bits (129), Expect = 7e-08
 Identities = 23/52 (44%), Positives = 35/52 (67%)
 Frame = -1

Query: 337 DNVHIAYRSDGKATGEAFVEFXTAEVAKTAMCKDKMTIGXRYVELFPSTARG 182
           D+++IAY  +GKATGE FVEF      K A+C+ K  +G R++++ P T +G
Sbjct: 458 DSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKG 509



 Score = 32.3 bits (72), Expect = 0.30
 Identities = 20/60 (33%), Positives = 32/60 (53%)
 Frame = -1

Query: 337 DNVHIAYRSDGKATGEAFVEFXTAEVAKTAMCKDKMTIGXRYVELFPSTARGGEQXEAAG 158
           D VH+     G+  G   V+F + +    A+ +++M +  RYVE+ P+T R   Q  AAG
Sbjct: 330 DAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATER---QWVAAG 386

to top

>RBM12_HUMAN (Q9NTZ6) RNA-binding protein 12 (RNA-binding motif protein 12)|
           (SH3/WW domain anchor protein in the nucleus) (SWAN)
          Length = 932

 Score = 54.3 bits (129), Expect = 7e-08
 Identities = 23/52 (44%), Positives = 35/52 (67%)
 Frame = -1

Query: 337 DNVHIAYRSDGKATGEAFVEFXTAEVAKTAMCKDKMTIGXRYVELFPSTARG 182
           D+++IAY  +GKATGE FVEF      K A+C+ K  +G R++++ P T +G
Sbjct: 458 DSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKG 509



 Score = 32.3 bits (72), Expect = 0.30
 Identities = 20/60 (33%), Positives = 32/60 (53%)
 Frame = -1

Query: 337 DNVHIAYRSDGKATGEAFVEFXTAEVAKTAMCKDKMTIGXRYVELFPSTARGGEQXEAAG 158
           D VH+     G+  G   V+F + +    A+ +++M +  RYVE+ P+T R   Q  AAG
Sbjct: 330 DAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATER---QWVAAG 386

to top

>RBM12_MOUSE (Q8R4X3) RNA-binding protein 12 (RNA-binding motif protein 12)|
           (SH3/WW domain anchor protein in the nucleus) (SWAN)
          Length = 1002

 Score = 53.9 bits (128), Expect = 1e-07
 Identities = 23/52 (44%), Positives = 35/52 (67%)
 Frame = -1

Query: 337 DNVHIAYRSDGKATGEAFVEFXTAEVAKTAMCKDKMTIGXRYVELFPSTARG 182
           D+++IAY  +GKATGE FVEF      K A+C+ K  +G R++++ P T +G
Sbjct: 458 DSIYIAYGPNGKATGEGFVEFRNDADYKAALCRHKQYMGNRFIQVHPITKKG 509



 Score = 32.3 bits (72), Expect = 0.30
 Identities = 20/60 (33%), Positives = 32/60 (53%)
 Frame = -1

Query: 337 DNVHIAYRSDGKATGEAFVEFXTAEVAKTAMCKDKMTIGXRYVELFPSTARGGEQXEAAG 158
           D VH+     G+  G   V+F + +    A+ +++M +  RYVE+ P+T R   Q  AAG
Sbjct: 330 DAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATER---QWVAAG 386

to top

>HNRH3_HUMAN (P31942) Heterogeneous nuclear ribonucleoprotein H3 (hnRNP H3)|
           (hnRNP 2H9)
          Length = 346

 Score = 53.5 bits (127), Expect = 1e-07
 Identities = 28/51 (54%), Positives = 34/51 (66%)
 Frame = -1

Query: 331 VHIAYRSDGKATGEAFVEFXTAEVAKTAMCKDKMTIGXRYVELFPSTARGG 179
           VHI   +DG+ATGEA VEF T E A  AM KDK  +  RY+ELF ++  GG
Sbjct: 223 VHIDIGADGRATGEADVEFVTHEDAVAAMSKDKNNMQHRYIELFLNSTPGG 273



 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 20/39 (51%), Positives = 30/39 (76%)
 Frame = -1

Query: 307 GKATGEAFVEFXTAEVAKTAMCKDKMTIGXRYVELFPST 191
           G++TGEAFV+F + E+A+ A+ K K  IG RY+E+F S+
Sbjct: 54  GRSTGEAFVQFASKEIAENALGKHKERIGHRYIEIFRSS 92

to top

>HNRPF_MACFA (Q60HC3) Heterogeneous nuclear ribonucleoprotein F (hnRNP F)|
          Length = 414

 Score = 51.2 bits (121), Expect = 6e-07
 Identities = 26/61 (42%), Positives = 34/61 (55%)
 Frame = -1

Query: 331 VHIAYRSDGKATGEAFVEFXTAEVAKTAMCKDKMTIGXRYVELFPSTARGGEQXEAAGQA 152
           VHI    DG+ TGEA VEF T E A  AM KD+  +  RY+ELF ++  G      + Q 
Sbjct: 316 VHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGASNGAYSSQV 375

Query: 151 L 149
           +
Sbjct: 376 M 376



 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 21/40 (52%), Positives = 30/40 (75%)
 Frame = -1

Query: 310 DGKATGEAFVEFXTAEVAKTAMCKDKMTIGXRYVELFPST 191
           +GK TGEAFV+F + E+A+ A+ K K  IG RY+E+F S+
Sbjct: 147 EGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSS 186



 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 20/46 (43%), Positives = 31/46 (67%)
 Frame = -1

Query: 331 VHIAYRSDGKATGEAFVEFXTAEVAKTAMCKDKMTIGXRYVELFPS 194
           VH  Y  +G+ +GEAFVE  + +  K A+ KD+ ++G RY+E+F S
Sbjct: 42  VHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKS 87

to top

>HNRPF_HUMAN (P52597) Heterogeneous nuclear ribonucleoprotein F (hnRNP F)|
           (Nucleolin-like protein mcs94-1)
          Length = 414

 Score = 51.2 bits (121), Expect = 6e-07
 Identities = 26/61 (42%), Positives = 34/61 (55%)
 Frame = -1

Query: 331 VHIAYRSDGKATGEAFVEFXTAEVAKTAMCKDKMTIGXRYVELFPSTARGGEQXEAAGQA 152
           VHI    DG+ TGEA VEF T E A  AM KD+  +  RY+ELF ++  G      + Q 
Sbjct: 316 VHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGASNGAYSSQV 375

Query: 151 L 149
           +
Sbjct: 376 M 376



 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 21/40 (52%), Positives = 30/40 (75%)
 Frame = -1

Query: 310 DGKATGEAFVEFXTAEVAKTAMCKDKMTIGXRYVELFPST 191
           +GK TGEAFV+F + E+A+ A+ K K  IG RY+E+F S+
Sbjct: 147 EGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSS 186



 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 20/46 (43%), Positives = 31/46 (67%)
 Frame = -1

Query: 331 VHIAYRSDGKATGEAFVEFXTAEVAKTAMCKDKMTIGXRYVELFPS 194
           VH  Y  +G+ +GEAFVE  + +  K A+ KD+ ++G RY+E+F S
Sbjct: 42  VHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKS 87

to top

>HNRH2_MOUSE (P70333) Heterogeneous nuclear ribonucleoprotein H' (hnRNP H')|
          Length = 449

 Score = 51.2 bits (121), Expect = 6e-07
 Identities = 27/50 (54%), Positives = 31/50 (62%)
 Frame = -1

Query: 331 VHIAYRSDGKATGEAFVEFXTAEVAKTAMCKDKMTIGXRYVELFPSTARG 182
           VHI    DG+ TGEA VEF T E A  AM KDK  +  RYVELF ++  G
Sbjct: 317 VHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNSTAG 366



 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 20/39 (51%), Positives = 30/39 (76%)
 Frame = -1

Query: 307 GKATGEAFVEFXTAEVAKTAMCKDKMTIGXRYVELFPST 191
           G++TGEAFV+F + E+A+ A+ K K  IG RY+E+F S+
Sbjct: 149 GRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187



 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 21/48 (43%), Positives = 31/48 (64%)
 Frame = -1

Query: 331 VHIAYRSDGKATGEAFVEFXTAEVAKTAMCKDKMTIGXRYVELFPSTA 188
           V   Y  +G+ +GEAFVE  + +  K A+ KD+ T+G RYVE+F S +
Sbjct: 43  VRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNS 90

to top

>HNRH2_HUMAN (P55795) Heterogeneous nuclear ribonucleoprotein H' (hnRNP H')|
           (FTP-3)
          Length = 449

 Score = 51.2 bits (121), Expect = 6e-07
 Identities = 27/50 (54%), Positives = 31/50 (62%)
 Frame = -1

Query: 331 VHIAYRSDGKATGEAFVEFXTAEVAKTAMCKDKMTIGXRYVELFPSTARG 182
           VHI    DG+ TGEA VEF T E A  AM KDK  +  RYVELF ++  G
Sbjct: 317 VHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNSTAG 366



 Score = 47.0 bits (110), Expect = 1e-05
 Identities = 21/48 (43%), Positives = 31/48 (64%)
 Frame = -1

Query: 331 VHIAYRSDGKATGEAFVEFXTAEVAKTAMCKDKMTIGXRYVELFPSTA 188
           +   Y  +G+ +GEAFVE  + E  K A+ KD+ T+G RYVE+F S +
Sbjct: 43  IRFIYTREGRPSGEAFVELESEEEVKLALKKDRETMGHRYVEVFKSNS 90



 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 20/39 (51%), Positives = 30/39 (76%)
 Frame = -1

Query: 307 GKATGEAFVEFXTAEVAKTAMCKDKMTIGXRYVELFPST 191
           G++TGEAFV+F + E+A+ A+ K K  IG RY+E+F S+
Sbjct: 149 GRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 187

to top

>HNRH1_MOUSE (O35737) Heterogeneous nuclear ribonucleoprotein H (hnRNP H)|
          Length = 448

 Score = 50.8 bits (120), Expect = 8e-07
 Identities = 27/50 (54%), Positives = 31/50 (62%)
 Frame = -1

Query: 331 VHIAYRSDGKATGEAFVEFXTAEVAKTAMCKDKMTIGXRYVELFPSTARG 182
           VHI    DG+ TGEA VEF T E A  AM KDK  +  RYVELF ++  G
Sbjct: 316 VHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAG 365



 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 20/39 (51%), Positives = 30/39 (76%)
 Frame = -1

Query: 307 GKATGEAFVEFXTAEVAKTAMCKDKMTIGXRYVELFPST 191
           G++TGEAFV+F + E+A+ A+ K K  IG RY+E+F S+
Sbjct: 148 GRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 186



 Score = 45.4 bits (106), Expect = 3e-05
 Identities = 20/46 (43%), Positives = 30/46 (65%)
 Frame = -1

Query: 331 VHIAYRSDGKATGEAFVEFXTAEVAKTAMCKDKMTIGXRYVELFPS 194
           +   Y  +G+ +GEAFVE  + +  K A+ KD+ T+G RYVE+F S
Sbjct: 42  IRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKS 87

to top

>HNRH1_HUMAN (P31943) Heterogeneous nuclear ribonucleoprotein H (hnRNP H)|
          Length = 448

 Score = 50.8 bits (120), Expect = 8e-07
 Identities = 27/50 (54%), Positives = 31/50 (62%)
 Frame = -1

Query: 331 VHIAYRSDGKATGEAFVEFXTAEVAKTAMCKDKMTIGXRYVELFPSTARG 182
           VHI    DG+ TGEA VEF T E A  AM KDK  +  RYVELF ++  G
Sbjct: 316 VHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNSTAG 365



 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 20/39 (51%), Positives = 30/39 (76%)
 Frame = -1

Query: 307 GKATGEAFVEFXTAEVAKTAMCKDKMTIGXRYVELFPST 191
           G++TGEAFV+F + E+A+ A+ K K  IG RY+E+F S+
Sbjct: 148 GRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 186



 Score = 45.4 bits (106), Expect = 3e-05
 Identities = 20/46 (43%), Positives = 30/46 (65%)
 Frame = -1

Query: 331 VHIAYRSDGKATGEAFVEFXTAEVAKTAMCKDKMTIGXRYVELFPS 194
           +   Y  +G+ +GEAFVE  + +  K A+ KD+ T+G RYVE+F S
Sbjct: 42  IRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKS 87

to top

>GRSF1_HUMAN (Q12849) G-rich sequence factor 1 (GRSF-1)|
          Length = 447

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 24/52 (46%), Positives = 32/52 (61%)
 Frame = -1

Query: 331 VHIAYRSDGKATGEAFVEFXTAEVAKTAMCKDKMTIGXRYVELFPSTARGGE 176
           + + Y S GKATGEA V F T E A  AM KD+  +  RY+ELF ++   G+
Sbjct: 396 ITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNSCPKGK 447



 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 18/37 (48%), Positives = 26/37 (70%)
 Frame = -1

Query: 304 KATGEAFVEFXTAEVAKTAMCKDKMTIGXRYVELFPS 194
           + TGEA+V+F   E+A  A+ K +  IG RY+E+FPS
Sbjct: 255 RKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPS 291



 Score = 38.1 bits (87), Expect = 0.005
 Identities = 20/74 (27%), Positives = 37/74 (50%)
 Frame = -1

Query: 337 DNVHIAYRSDGKATGEAFVEFXTAEVAKTAMCKDKMTIGXRYVELFPSTARGGEQXEAAG 158
           + +H     DGK  G+A +E  + +  + A+ K +M +G RYVE++       E  +A  
Sbjct: 147 NGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEI---NNEDVDALM 203

Query: 157 QALNAAYHKMLNPG 116
           ++L      ++N G
Sbjct: 204 KSLQVKSSPVVNDG 217

to top

>GRSF1_MOUSE (Q8C5Q4) G-rich sequence factor 1 (GRSF-1)|
          Length = 479

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 24/52 (46%), Positives = 32/52 (61%)
 Frame = -1

Query: 331 VHIAYRSDGKATGEAFVEFXTAEVAKTAMCKDKMTIGXRYVELFPSTARGGE 176
           + + Y S GKATGEA V F T E A  AM KD+  +  RY+ELF ++   G+
Sbjct: 428 ITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVQHRYIELFLNSCPKGK 479



 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 18/37 (48%), Positives = 26/37 (70%)
 Frame = -1

Query: 304 KATGEAFVEFXTAEVAKTAMCKDKMTIGXRYVELFPS 194
           + TGEA+V+F   E+A  A+ K +  IG RY+E+FPS
Sbjct: 287 RKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPS 323



 Score = 37.0 bits (84), Expect = 0.012
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = -1

Query: 337 DNVHIAYRSDGKATGEAFVEFXTAEVAKTAMCKDKMTIGXRYVELF 200
           + +H     DGK  G+A +E  + +  + A+ K +M +G RYVE++
Sbjct: 179 NGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY 224

to top

>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein|
           19)
          Length = 960

 Score = 33.1 bits (74), Expect = 0.18
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -1

Query: 331 VHIAYRSDGKATGEAFVEFXTAEVAKTAMCKDKMTIGXRYVELF 200
           + I   + G  TG  FV+F   E  K A+  ++  +G RY+E+F
Sbjct: 322 IRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVF 365

to top

>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein|
           19)
          Length = 952

 Score = 32.3 bits (72), Expect = 0.30
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
 Frame = -1

Query: 331 VHIAYRSDGKATGEAFVEFXTAEVAKTAMCKDKMTIGXRYVELF----PSTARG 182
           + I   + G  TG  FV+  + E  K A+  ++  +G RY+E+F      TARG
Sbjct: 321 IRIVRNAHGNKTGYVFVDLSSEEEVKKALKCNRDYMGGRYIEVFREKQAPTARG 374

to top

>TRI47_MOUSE (Q8C0E3) Tripartite motif protein 47|
          Length = 641

 Score = 32.3 bits (72), Expect = 0.30
 Identities = 22/63 (34%), Positives = 25/63 (39%)
 Frame = +1

Query: 148 SVPAPRLRPARLLGQSRGTAPRTWXRWSSYPCTWQSLQPRPSGTPQRPRQWPSHPSGTRC 327
           SVP P   PA   G +RG  P      +  P       P PS  P  P QWP+     RC
Sbjct: 83  SVPGPMSAPAS--GSTRGATPEPSAPSAPPPA------PEPSA-PCAPEQWPAGEEPVRC 133

Query: 328 AHC 336
             C
Sbjct: 134 DAC 136

to top

>SC24B_ARATH (Q9M081) Putative protein transport protein Sec24-like At4g32640|
          Length = 1069

 Score = 30.8 bits (68), Expect = 0.88
 Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
 Frame = +1

Query: 118 QGSASCGKLRSVPAPRLRPARLLGQSRGTAPRTWXRWSSYPCTWQSLQP--RPSGTPQRP 291
           Q S S G  +  P+P  RP    G +R   P       S P  +QS  P  RP+G P R 
Sbjct: 70  QQSPSYGAPQRGPSPMSRPGPPAGMARPGGPPP----VSQPAGFQSNVPLNRPTGPPSRQ 125

Query: 292 RQWPSHPS 315
             + S PS
Sbjct: 126 PSFGSRPS 133

to top

>NUCL_MACFA (Q4R4J7) Nucleolin|
          Length = 710

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -1

Query: 310 DGKATGEAFVEFXT-AEVAKTAMCKDKMTIGXRYVELFPSTARGGEQXEAAGQ 155
           DGK+ G A++EF T A+  KT   K    I  R + L+ +  +G  Q    G+
Sbjct: 425 DGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGK 477



 Score = 27.7 bits (60), Expect = 7.4
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -1

Query: 331 VHIAYRSDGKATGEAFVEFXTAEVAKTAMCK-DKMTIGXRYVELFPSTARG 182
           + +    +GK+ G AF+EF + E AK A+   +K  I  R + L     RG
Sbjct: 512 IKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRG 562

to top

>AP2_ARATH (P47927) Floral homeotic protein APETALA2|
          Length = 432

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 23/73 (31%), Positives = 33/73 (45%)
 Frame = +1

Query: 91  GTRLCPSDTQGSASCGKLRSVPAPRLRPARLLGQSRGTAPRTWXRWSSYPCTWQSLQPRP 270
           G + C SD    +S GK  +V A  + PA+ L +SR   PR+           +S Q R 
Sbjct: 87  GVKFCQSDLATGSSAGKATNVAAAVVEPAQPLKKSR-RGPRS-----------RSSQYRG 134

Query: 271 SGTPQRPRQWPSH 309
               +R  +W SH
Sbjct: 135 VTFYRRTGRWESH 147

to top

>NUCL_HUMAN (P19338) Nucleolin (Protein C23)|
          Length = 709

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -1

Query: 310 DGKATGEAFVEFXT-AEVAKTAMCKDKMTIGXRYVELFPSTARGGEQXEAAGQ 155
           DGK+ G A++EF T A+  KT   K    I  R + L+ +  +G  Q    G+
Sbjct: 424 DGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGK 476



 Score = 27.7 bits (60), Expect = 7.4
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -1

Query: 331 VHIAYRSDGKATGEAFVEFXTAEVAKTAMCK-DKMTIGXRYVELFPSTARG 182
           + +    +GK+ G AF+EF + E AK A+   +K  I  R + L     RG
Sbjct: 511 IKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRG 561

to top

>NUCL_MESAU (P08199) Nucleolin (Protein C23)|
          Length = 713

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -1

Query: 331 VHIAYRSDGKATGEAFVEFXTAEVAKTAMCK-DKMTIGXRYVELFPSTARG 182
           + +     GK+ G AF+EF + E AK A+   +KM I  R + L     RG
Sbjct: 511 IKVPQNQQGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRG 561

to top

>NUCL_PONPY (Q5RF26) Nucleolin|
          Length = 711

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -1

Query: 310 DGKATGEAFVEFXT-AEVAKTAMCKDKMTIGXRYVELFPSTARGGEQXEAAGQ 155
           DGK+ G A++EF T A+  KT   K    I  R + L+ +  +G  Q    G+
Sbjct: 426 DGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGK 478



 Score = 27.7 bits (60), Expect = 7.4
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -1

Query: 331 VHIAYRSDGKATGEAFVEFXTAEVAKTAMCK-DKMTIGXRYVELFPSTARG 182
           + +    +GK+ G AF+EF + E AK A+   +K  I  R + L     RG
Sbjct: 513 IKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRG 563

to top

>NUCL_XENLA (P20397) Nucleolin (Protein C23)|
          Length = 650

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = -1

Query: 316 RSDGKATGEAFVEFXTAEVAKTAM 245
           ++ G+A G AF+EF +AE AK AM
Sbjct: 444 QNQGRAKGFAFIEFSSAEDAKDAM 467

to top

>SCND2_HUMAN (Q9GZW5) SCAN domain-containing protein 2|
          Length = 306

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
 Frame = +1

Query: 124 SASCGKLRSVPAPRLRPARLLGQSRGTAP----RTWXRWSSYPCTWQSLQPRPSGTPQRP 291
           SA+ G L   PAPR RP  L  +  GT P    R     ++ P T    +P P  TP+RP
Sbjct: 212 SATEGALTRTPAPR-RP--LQRRRPGTGPWRPGRQRGAGTAPPGTQPRQRPSPRPTPRRP 268

Query: 292 RQWPSHP 312
           R   + P
Sbjct: 269 RPRLARP 275

to top

>NUCL_RAT (P13383) Nucleolin (Protein C23)|
          Length = 712

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -1

Query: 331 VHIAYRSDGKATGEAFVEFXTAEVAKTAMCK-DKMTIGXRYVELFPSTARG 182
           + +     GK+ G AF+EF + E AK A+   +KM I  R + L     RG
Sbjct: 514 IKVPQNPHGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRG 564

to top

>RAVR1_RAT (Q5XI28) Protein raver-1|
          Length = 748

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
 Frame = -1

Query: 325 IAYRSDGKATGEAFVEFXTAEVAKTAMCK-DKMTIGXRYVELFPSTARGGEQXEAAGQAL 149
           +A   DG+  G A +E+ TAE+A+ A  + D + +G  ++ +  S    G    +   AL
Sbjct: 253 LASGQDGQLKGFAVLEYETAEMAEAAQQRADGLALGGSHLRV--SFCAPGPPGRSMLAAL 310

Query: 148 NAAYHKMLNPGCQKGII 98
            AA    LN G  KG++
Sbjct: 311 IAAQATALNRG--KGLL 325

to top

>IF2_PROMM (Q7V5M4) Translation initiation factor IF-2|
          Length = 1125

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = +1

Query: 154 PAPRLRPARLLGQSRGTAPRTWXRWSSYPCTWQSLQPRPSGTPQRPRQWPSHP 312
           PAP  RPA        + P+T  R  + P +  ++  RP+    R    PS P
Sbjct: 127 PAPPTRPANPTPTPTSSPPKTAARPINAPISRPAIPSRPTAPTPRSANKPSSP 179

to top

>ZN219_HUMAN (Q9P2Y4) Zinc finger protein 219|
          Length = 722

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
 Frame = +1

Query: 145 RSVPAPRLRPARLLGQSRGTAPRTWXRWSSYPCTW----QSLQPRPSGTPQRPRQWPSHP 312
           RS   P   P       RG+AP++  + S  P TW     S +P  SG     R+ P+ P
Sbjct: 553 RSGAGPGPPPEPPPPSQRGSAPQSGAKPSPQPATWVEGASSPRPPSSGAGPGSRRKPASP 612

Query: 313 SGT 321
             T
Sbjct: 613 GRT 615

to top

>PCLO_CHICK (Q9PU36) Protein piccolo (Aczonin) (Fragment)|
          Length = 5120

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 18/70 (25%), Positives = 31/70 (44%)
 Frame = +1

Query: 103  CPSDTQGSASCGKLRSVPAPRLRPARLLGQSRGTAPRTWXRWSSYPCTWQSLQPRPSGTP 282
            C +    S   G +  VP P+L P++ + +   T  +      S+     S  P P+ T 
Sbjct: 886  CQTQRAMSGQLGDMGKVPLPKLGPSQPVSKPPATPQKQPVPAVSHSPQKSSTPPTPAAT- 944

Query: 283  QRPRQWPSHP 312
             +P++ PS P
Sbjct: 945  -KPKEEPSVP 953

to top

>VGLD_PRVRI (P07645) Protein gp50|
          Length = 402

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 18/46 (39%), Positives = 22/46 (47%)
 Frame = -2

Query: 294 ARPLWSSXRPRLQRLPCARIR*PSVPGTWSCSPRLPEEASRXKPRG 157
           ARP   S RPR +  P  R +    P T +   RLPE A+R    G
Sbjct: 260 ARPSAGSPRPRPRPRPRPRPKPEPAPATPAPPDRLPEPATRDHAAG 305

to top

>SDK1_HUMAN (Q7Z5N4) Protein sidekick-1 precursor|
          Length = 2213

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = +1

Query: 253 SLQPRPSGTPQRPRQWPSHPSG 318
           SL PRP   P RPR  P  P G
Sbjct: 39  SLAPRPGPEPSRPRAAPETPGG 60

to top

>DEMA_MOUSE (Q9WV69) Dematin (Erythrocyte membrane protein band 4.9)|
          Length = 405

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
 Frame = +1

Query: 142 LRSVPAPRLRPARLLGQSRGT--APRTWXRWSSYPCTWQSLQPRPSGTPQRPRQWPSHPS 315
           L  V  PR R   L  +S     +P  W    +     Q+  PR +GTP+       HP 
Sbjct: 73  LEHVELPRSRECSLSPKSTSPPPSPEVWAESRTLGIISQASTPRTTGTPRTSLPHFHHPE 132

Query: 316 GTR 324
            TR
Sbjct: 133 TTR 135

to top

>RAVR1_HUMAN (Q8IY67) Protein raver-1|
          Length = 606

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
 Frame = -1

Query: 325 IAYRSDGKATGEAFVEFXTAEVAKTAMCK-DKMTIGXRYVELFPSTARGGEQXEAAGQAL 149
           +A   DG+  G A +E+ TAE+A+ A  + D +++G  ++ +  S    G    +   AL
Sbjct: 253 LACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRV--SFCAPGPPGRSMLAAL 310

Query: 148 NAAYHKMLNPGCQKGII 98
            AA    LN G  KG++
Sbjct: 311 IAAQATALNRG--KGLL 325

to top

>ZN206_HUMAN (Q96SZ4) Zinc finger protein 206 (Zinc finger and SCAN|
           domain-containing protein 10)
          Length = 725

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 21/64 (32%), Positives = 23/64 (35%), Gaps = 8/64 (12%)
 Frame = +1

Query: 148 SVPAPRLRPARLLGQSRGTAPRTWXRWSSYPCTWQSLQPRPSGT--------PQRPRQWP 303
           SV  P   P R   Q R   P    +W   P + Q L P P  T        PQ P  WP
Sbjct: 118 SVLGPSDEPPR--PQPRAAQPAEPGQWRLPPSSKQPLSPGPQKTFQALQESSPQGPSPWP 175

Query: 304 SHPS 315
              S
Sbjct: 176 EESS 179

to top

>YI31_AGRT7 (P05680) Insertion element IS136 hypothetical 16.9 kDa protein|
          Length = 159

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
 Frame = +1

Query: 226 WSSYPCTWQSLQPRPSGTPQRPRQWPSHP--SGTRCA 330
           W + PC W+S QP         R W   P  +G R A
Sbjct: 81  WVTTPCYWRSTQPFARAASTMARSWSCAPTCAGARTA 117

to top

>NUCL_CHICK (P15771) Nucleolin (Protein C23)|
          Length = 694

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -1

Query: 334 NVHIAYRSDGKATGEAFVEFXTAEVAKTAM 245
           ++ +   + G+  G AFVEF TAE AK A+
Sbjct: 486 SIKMPQNNQGRPKGYAFVEFPTAEDAKEAL 515

to top

>CB025_GECJA (Q6DV04) Protein C2orf25 homolog, mitochondrial precursor|
          Length = 296

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
 Frame = -3

Query: 239 G*DDHRXQVRGAVPLDCPXXXXXXXXXXGTERSLPQD-AEPWVSEGHNLV 93
           G  D R Q+ G +  DC              R+LP   AEP  SE H  V
Sbjct: 66  GPQDQRFQLPGNIGFDCHLNGTTSQKKSQVHRTLPDILAEPLSSERHEFV 115

to top

>NANK_HAEIN (P44541) Putative N-acetylmannosamine kinase (EC 2.7.1.60) (ManNAc|
           kinase)
          Length = 300

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +2

Query: 176 LASSGSRGEQLHVPGTDGHLIL-AHGSLCNLGRXELHKGLASGLPIRAV 319
           +  +GSRG   H+    GH +   +G++C  GR    + +ASG  I AV
Sbjct: 142 ILQTGSRGIAGHI----GHTLADPNGAICGCGRRGCVEAIASGRAIEAV 186

to top

>SPTB1_HUMAN (P11277) Spectrin beta chain, erythrocyte (Beta-I spectrin)|
          Length = 2136

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 10/50 (20%)
 Frame = +1

Query: 154  PAPRLRPARLLGQSRGTAPRTWXR----------WSSYPCTWQSLQPRPS 273
            PA    P    G++ G AP +             WS    +W+SLQP PS
Sbjct: 2084 PAEETGPQEEEGETAGEAPVSHHAATERTSPVSLWSRLSSSWESLQPEPS 2133

to top

>VP40_ILTVT (P23984) Capsid protein P40 [Contains: Capsid protein VP24|
           (Assemblin) (Protease) (EC 3.4.21.97); Capsid protein
           VP22A; C-terminal peptide]
          Length = 586

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +2

Query: 176 LASSGSRGEQLHVPGTDGHLILAHGSLCNLGRXE 277
           L+ S  R E+  VPG D     AH +LC LGR E
Sbjct: 122 LSLSSRRLEKNEVPGKD---FFAHVALCELGRRE 152

to top

>DX26B_MOUSE (Q8BND4) Protein DDX26B|
          Length = 861

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = +2

Query: 89  PEQDYALLTPRVQHLVV--SCVQCLP 160
           PEQ+   L PR  H VV  SCV C P
Sbjct: 295 PEQNLPSLPPRTSHPVVRFSCVDCEP 320

to top

>RAVR1_MOUSE (Q9CW46) Protein raver-1|
          Length = 748

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
 Frame = -1

Query: 325 IAYRSDGKATGEAFVEFXTAEVAKTAMCK-DKMTIGXRYVELFPSTARGGEQXEAAGQAL 149
           +A   DG+  G A +E+ TAE+A+ A  + D   +G  ++ +  S    G    +   AL
Sbjct: 253 LACGQDGQLKGFAVLEYETAEMAEAAQERADGQALGDSHLRV--SFCAPGPPGRSMLAAL 310

Query: 148 NAAYHKMLNPGCQKGII 98
            AA    LN G  KG++
Sbjct: 311 IAAQATALNRG--KGLL 325

to top

>MDC1_MACMU (Q5TM68) Mediator of DNA damage checkpoint protein 1|
          Length = 2173

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 2    PSHQKQAARTNTIQQ*HTXFKHDESTKAKPEQDYALLTPR 121
            P HQKQ  R    Q+     + +E T  KP ++  ++TP+
Sbjct: 1905 PPHQKQPQRGEVSQKTVIIKEEEEDTAEKPGKEEDVMTPK 1944

to top

>FA8A1_HUMAN (Q9UBU6) Protein FAM8A1 (Autosomal highly conserved protein)|
          Length = 413

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 24/76 (31%), Positives = 31/76 (40%), Gaps = 10/76 (13%)
 Frame = +1

Query: 109 SDTQGSASCGKLRSVPAPRLRPARLLGQSRGTAPRTWXRWSSY--PCTWQS--------L 258
           ++ Q  A C +     APR RPARL  +        W  W SY    TW S         
Sbjct: 85  AELQEQAGC-EAPEAAAPRERPARLSAREYSRQVHEWL-WQSYCGYLTWHSGLAAFPAYC 142

Query: 259 QPRPSGTPQRPRQWPS 306
            P+PS     P+ +PS
Sbjct: 143 SPQPS-----PQSFPS 153


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,607,103
Number of Sequences: 219361
Number of extensions: 973188
Number of successful extensions: 3319
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 3169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3319
length of database: 80,573,946
effective HSP length: 87
effective length of database: 61,489,539
effective search space used: 1475748936
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result