ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd16c06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC138454.2| Oryza sativa (japonica cultivar-group) chromosome... 149 7e-33
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 149 7e-33
3dbj|AK058340.1| Oryza sativa (japonica cultivar-group) cDNA clon... 149 7e-33
4gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 149 7e-33
5dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 125 1e-25
6gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 125 1e-25
7emb|BX000498.1|CNS08CDO Oryza sativa chromosome 12, . BAC OSJNBa... 125 1e-25
8gb|AY108120.1| Zea mays PCO106809 mRNA sequence 119 6e-24
9gb|BT019015.1| Zea mays clone Contig510.F mRNA sequence 103 4e-19
10gb|AY105685.1| Zea mays PCO106810 mRNA sequence 92 1e-15
11dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 62 1e-06
12dbj|AP005290.2| Oryza sativa (japonica cultivar-group) genomic D... 62 1e-06
13dbj|AP004082.3| Oryza sativa (japonica cultivar-group) genomic D... 62 1e-06
14ref|NM_125998.3| Arabidopsis thaliana RNA binding / nucleic acid... 46 0.072
15emb|BX833141.1|CNS09Z0Y Arabidopsis thaliana Full-length cDNA Co... 46 0.072
16dbj|AB011474.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 46 0.072
17emb|AL137164.3|CNS01DWF Human chromosome 14 DNA sequence BAC R-8... 46 0.072
18gb|AC107822.18| Mus musculus chromosome 7, clone RP23-182C11, co... 44 0.29
19ref|XM_381865.1| Gibberella zeae PH-1 chromosome 1 hypothetical ... 40 4.5
20emb|AL162753.2|NMA2Z2491 Neisseria meningitidis serogroup A stra... 40 4.5
21gb|AC025069.9| Homo sapiens chromosome 11, clone RP11-132I17, co... 40 4.5
22gb|AC021824.7| Homo sapiens chromosome 11, clone RP11-220C23, co... 40 4.5
23gb|AE002098.2| Neisseria meningitidis MC58, complete genome 40 4.5
24gb|AY111409.1| Zea mays CL6947_1 mRNA sequence 40 4.5 
>gb|AC138454.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0019B24, complete sequence
          Length = 162385

 Score =  149 bits (75), Expect = 7e-33
 Identities = 121/137 (88%)
 Strand = Plus / Minus

                                                                         
Query: 198   gggaacagctccacgtacctggnaccgatggtcatcttatccttgcacatggcagtcttt 257
             |||||||||||||||||||| |  || ||||||||||| |||||||||||||| ||||||
Sbjct: 69655 gggaacagctccacgtaccttgtcccaatggtcatcttgtccttgcacatggctgtcttt 69596

                                                                         
Query: 258   gcaacctcggccgtcnggaactccacaaaggcctcgccagtggccttcccatccgagcgg 317
             |||||||| || ||  |||||||||||||||| || ||||||||||| ||||| |  |||
Sbjct: 69595 gcaacctctgctgttgggaactccacaaaggcttctccagtggccttaccatctggacgg 69536

                              
Query: 318   tacgcgatgtgcacatt 334
             |||||||||||||||||
Sbjct: 69535 tacgcgatgtgcacatt 69519
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score =  149 bits (75), Expect = 7e-33
 Identities = 121/137 (88%)
 Strand = Plus / Minus

                                                                           
Query: 198     gggaacagctccacgtacctggnaccgatggtcatcttatccttgcacatggcagtcttt 257
               |||||||||||||||||||| |  || ||||||||||| |||||||||||||| ||||||
Sbjct: 1555119 gggaacagctccacgtaccttgtcccaatggtcatcttgtccttgcacatggctgtcttt 1555060

                                                                           
Query: 258     gcaacctcggccgtcnggaactccacaaaggcctcgccagtggccttcccatccgagcgg 317
               |||||||| || ||  |||||||||||||||| || ||||||||||| ||||| |  |||
Sbjct: 1555059 gcaacctctgctgttgggaactccacaaaggcttctccagtggccttaccatctggacgg 1555000

                                
Query: 318     tacgcgatgtgcacatt 334
               |||||||||||||||||
Sbjct: 1554999 tacgcgatgtgcacatt 1554983
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>dbj|AK058340.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-D07, full
            insert sequence
          Length = 1401

 Score =  149 bits (75), Expect = 7e-33
 Identities = 121/137 (88%)
 Strand = Plus / Minus

                                                                        
Query: 198  gggaacagctccacgtacctggnaccgatggtcatcttatccttgcacatggcagtcttt 257
            |||||||||||||||||||| |  || ||||||||||| |||||||||||||| ||||||
Sbjct: 1162 gggaacagctccacgtaccttgtcccaatggtcatcttgtccttgcacatggctgtcttt 1103

                                                                        
Query: 258  gcaacctcggccgtcnggaactccacaaaggcctcgccagtggccttcccatccgagcgg 317
            |||||||| || ||  |||||||||||||||| || ||||||||||| ||||| |  |||
Sbjct: 1102 gcaacctctgctgttgggaactccacaaaggcttctccagtggccttaccatctggacgg 1043

                             
Query: 318  tacgcgatgtgcacatt 334
            |||||||||||||||||
Sbjct: 1042 tacgcgatgtgcacatt 1026
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  149 bits (75), Expect = 7e-33
 Identities = 121/137 (88%)
 Strand = Plus / Minus

                                                                           
Query: 198     gggaacagctccacgtacctggnaccgatggtcatcttatccttgcacatggcagtcttt 257
               |||||||||||||||||||| |  || ||||||||||| |||||||||||||| ||||||
Sbjct: 1552840 gggaacagctccacgtaccttgtcccaatggtcatcttgtccttgcacatggctgtcttt 1552781

                                                                           
Query: 258     gcaacctcggccgtcnggaactccacaaaggcctcgccagtggccttcccatccgagcgg 317
               |||||||| || ||  |||||||||||||||| || ||||||||||| ||||| |  |||
Sbjct: 1552780 gcaacctctgctgttgggaactccacaaaggcttctccagtggccttaccatctggacgg 1552721

                                
Query: 318     tacgcgatgtgcacatt 334
               |||||||||||||||||
Sbjct: 1552720 tacgcgatgtgcacatt 1552704
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score =  125 bits (63), Expect = 1e-25
 Identities = 118/137 (86%)
 Strand = Plus / Minus

                                                                           
Query: 198     gggaacagctccacgtacctggnaccgatggtcatcttatccttgcacatggcagtcttt 257
               |||||||||||||||||||| |  || ||||||||||| |||||||||||||| ||||| 
Sbjct: 1498132 gggaacagctccacgtaccttgtcccaatggtcatcttgtccttgcacatggctgtcttc 1498073

                                                                           
Query: 258     gcaacctcggccgtcnggaactccacaaaggcctcgccagtggccttcccatccgagcgg 317
                ||||||| || ||| ||||||||||| |||| || ||||||||||| ||||| |  |||
Sbjct: 1498072 acaacctctgctgtcgggaactccacataggcttctccagtggccttaccatctggacgg 1498013

                                
Query: 318     tacgcgatgtgcacatt 334
               ||| |||||||||||||
Sbjct: 1498012 tacacgatgtgcacatt 1497996
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  125 bits (63), Expect = 1e-25
 Identities = 118/137 (86%)
 Strand = Plus / Minus

                                                                           
Query: 198     gggaacagctccacgtacctggnaccgatggtcatcttatccttgcacatggcagtcttt 257
               |||||||||||||||||||| |  || ||||||||||| |||||||||||||| ||||| 
Sbjct: 1498132 gggaacagctccacgtaccttgtcccaatggtcatcttgtccttgcacatggctgtcttc 1498073

                                                                           
Query: 258     gcaacctcggccgtcnggaactccacaaaggcctcgccagtggccttcccatccgagcgg 317
                ||||||| || ||| ||||||||||| |||| || ||||||||||| ||||| |  |||
Sbjct: 1498072 acaacctctgctgtcgggaactccacataggcttctccagtggccttaccatctggacgg 1498013

                                
Query: 318     tacgcgatgtgcacatt 334
               ||| |||||||||||||
Sbjct: 1498012 tacacgatgtgcacatt 1497996
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>emb|BX000498.1|CNS08CDO Oryza sativa chromosome 12, . BAC OSJNBa0009F13 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 183385

 Score =  125 bits (63), Expect = 1e-25
 Identities = 118/137 (86%)
 Strand = Plus / Plus

                                                                          
Query: 198    gggaacagctccacgtacctggnaccgatggtcatcttatccttgcacatggcagtcttt 257
              |||||||||||||||||||| |  || ||||||||||| |||||||||||||| ||||| 
Sbjct: 127600 gggaacagctccacgtaccttgtcccaatggtcatcttgtccttgcacatggctgtcttc 127659

                                                                          
Query: 258    gcaacctcggccgtcnggaactccacaaaggcctcgccagtggccttcccatccgagcgg 317
               ||||||| || ||| ||||||||||| |||| || ||||||||||| ||||| |  |||
Sbjct: 127660 acaacctctgctgtcgggaactccacataggcttctccagtggccttaccatctggacgg 127719

                               
Query: 318    tacgcgatgtgcacatt 334
              ||| |||||||||||||
Sbjct: 127720 tacacgatgtgcacatt 127736
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>gb|AY108120.1| Zea mays PCO106809 mRNA sequence
          Length = 1052

 Score =  119 bits (60), Expect = 6e-24
 Identities = 139/165 (84%), Gaps = 1/165 (0%)
 Strand = Plus / Minus

                                                                       
Query: 167 ttcgncctgctcgcctcctcgggcagtcgaggggaacagctccacgtacctggnaccgat 226
           |||| |||||| |||||||| ||  ||||| |||||||||||||||||||| |  || ||
Sbjct: 997 ttcgccctgctggcctcctctggg-gtcgacgggaacagctccacgtacctcgtcccaat 939

                                                                       
Query: 227 ggtcatcttatccttgcacatggcagtctttgcaacctcggccgtcnggaactccacaaa 286
           |||||||||||||||||||||||| ||||| || || || || ||| | ||||| || ||
Sbjct: 938 ggtcatcttatccttgcacatggccgtcttcgcgacttcagctgtcggaaactcaacgaa 879

                                                        
Query: 287 ggcctcgccagtggccttcccatccgagcggtacgcgatgtgcac 331
           ||| || || |||||||||||||| |||||||| ||||| |||||
Sbjct: 878 ggcttcacccgtggccttcccatcggagcggtaggcgatatgcac 834
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>gb|BT019015.1| Zea mays clone Contig510.F mRNA sequence
          Length = 1222

 Score =  103 bits (52), Expect = 4e-19
 Identities = 137/165 (83%), Gaps = 1/165 (0%)
 Strand = Plus / Minus

                                                                        
Query: 167  ttcgncctgctcgcctcctcgggcagtcgaggggaacagctccacgtacctggnaccgat 226
            |||| |||||| |||||||| ||  ||||| |||||||||||| ||||||| |  || ||
Sbjct: 1001 ttcgccctgctggcctcctctggg-gtcgacgggaacagctccccgtacctcgtcccaat 943

                                                                        
Query: 227  ggtcatcttatccttgcacatggcagtctttgcaacctcggccgtcnggaactccacaaa 286
             ||||||||||||||||||||||| ||||| || || || || ||| | ||||| || ||
Sbjct: 942  agtcatcttatccttgcacatggccgtcttcgcgacttccgctgtcggaaactcaacgaa 883

                                                         
Query: 287  ggcctcgccagtggccttcccatccgagcggtacgcgatgtgcac 331
            ||| || || |||||||||||||| |||||||| ||||| |||||
Sbjct: 882  ggcttcacccgtggccttcccatcggagcggtaggcgatatgcac 838
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>gb|AY105685.1| Zea mays PCO106810 mRNA sequence
          Length = 1270

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 137/167 (82%), Gaps = 1/167 (0%)
 Strand = Plus / Minus

                                                                        
Query: 168  tcgncctgctcgcctcctcgggcagtcgaggggaacagctccacgtacctggnaccgatg 227
            ||| ||||||||||||||| ||  || || |||||||||||||| ||||| |  ||||| 
Sbjct: 1015 tcgccctgctcgcctcctctggg-gtagacgggaacagctccacatacctcgtcccgata 957

                                                                        
Query: 228  gtcatcttatccttgcacatggcagtctttgcaacctcggccgtcnggaactccacaaag 287
            |||||||||||||||||||| || ||||| ||||| || || ||  ||||||| ||||||
Sbjct: 956  gtcatcttatccttgcacatcgccgtcttggcaacttcagctgttgggaactcaacaaag 897

                                                           
Query: 288  gcctcgccagtggccttcccatccgagcggtacgcgatgtgcacatt 334
            || || || || || |||||||| ||||||  ||| || ||||||||
Sbjct: 896  gcttcaccggtagctttcccatctgagcggatcgcaatatgcacatt 850
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 57/66 (86%)
 Strand = Plus / Minus

                                                                            
Query: 198      gggaacagctccacgtacctggnaccgatggtcatcttatccttgcacatggcagtcttt 257
                ||||||||||||| |||||| |  || ||||||||||| |||||||| ||||| ||||| 
Sbjct: 35838669 gggaacagctccatgtaccttgtcccaatggtcatcttgtccttgcatatggctgtcttc 35838610

                      
Query: 258      gcaacc 263
                ||||||
Sbjct: 35838609 gcaacc 35838604
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>dbj|AP005290.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1282_E10
          Length = 107284

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 57/66 (86%)
 Strand = Plus / Minus

                                                                         
Query: 198   gggaacagctccacgtacctggnaccgatggtcatcttatccttgcacatggcagtcttt 257
             ||||||||||||| |||||| |  || ||||||||||| |||||||| ||||| ||||| 
Sbjct: 29215 gggaacagctccatgtaccttgtcccaatggtcatcttgtccttgcatatggctgtcttc 29156

                   
Query: 258   gcaacc 263
             ||||||
Sbjct: 29155 gcaacc 29150
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>dbj|AP004082.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1149_C12
          Length = 120743

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 57/66 (86%)
 Strand = Plus / Minus

                                                                          
Query: 198    gggaacagctccacgtacctggnaccgatggtcatcttatccttgcacatggcagtcttt 257
              ||||||||||||| |||||| |  || ||||||||||| |||||||| ||||| ||||| 
Sbjct: 109384 gggaacagctccatgtaccttgtcccaatggtcatcttgtccttgcatatggctgtcttc 109325

                    
Query: 258    gcaacc 263
              ||||||
Sbjct: 109324 gcaacc 109319
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>ref|NM_125998.3| Arabidopsis thaliana RNA binding / nucleic acid binding AT5G66010
           mRNA, complete cds
          Length = 1116

 Score = 46.1 bits (23), Expect = 0.072
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 276 aactccacaaaggcctcgccagtggccttcccatc 310
           ||||||||||| ||||| || ||||||||||||||
Sbjct: 743 aactccacaaatgcctctcccgtggccttcccatc 709
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>emb|BX833141.1|CNS09Z0Y Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL36ZA08 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 832

 Score = 46.1 bits (23), Expect = 0.072
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 276 aactccacaaaggcctcgccagtggccttcccatc 310
           ||||||||||| ||||| || ||||||||||||||
Sbjct: 591 aactccacaaatgcctctcccgtggccttcccatc 557
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>dbj|AB011474.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K2A18
          Length = 79899

 Score = 46.1 bits (23), Expect = 0.072
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                
Query: 276   aactccacaaaggcctcgccagtggccttcccatc 310
             ||||||||||| ||||| || ||||||||||||||
Sbjct: 17106 aactccacaaatgcctctcccgtggccttcccatc 17072
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>emb|AL137164.3|CNS01DWF Human chromosome 14 DNA sequence BAC R-893D14 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 175368

 Score = 46.1 bits (23), Expect = 0.072
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 231   atcttatccttgcacatggcagtcttt 257
             ||||| |||||||||||||||||||||
Sbjct: 89740 atcttctccttgcacatggcagtcttt 89714
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>gb|AC107822.18| Mus musculus chromosome 7, clone RP23-182C11, complete sequence
          Length = 220443

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 116    cccagggttcagcatcttgtgg 137
              ||||||||||||||||||||||
Sbjct: 175012 cccagggttcagcatcttgtgg 175033
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>ref|XM_381865.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG01689.1)
           partial mRNA
          Length = 393

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 274 ggaactccacaaaggcctcgccag 297
           ||||| ||||||||||||||||||
Sbjct: 109 ggaaccccacaaaggcctcgccag 132
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>emb|AL162753.2|NMA2Z2491 Neisseria meningitidis serogroup A strain Z2491 complete genome; segment
              2/7
          Length = 349061

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 241    tgcacatggcagtctttgca 260
              ||||||||||||||||||||
Sbjct: 138235 tgcacatggcagtctttgca 138216
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>gb|AC025069.9| Homo sapiens chromosome 11, clone RP11-132I17, complete sequence
          Length = 159986

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 92    gaacaagattatgcccttct 111
             ||||||||||||||||||||
Sbjct: 81687 gaacaagattatgcccttct 81668
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>gb|AC021824.7| Homo sapiens chromosome 11, clone RP11-220C23, complete sequence
          Length = 160869

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 92    gaacaagattatgcccttct 111
             ||||||||||||||||||||
Sbjct: 32460 gaacaagattatgcccttct 32441
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>gb|AE002098.2| Neisseria meningitidis MC58, complete genome
          Length = 2272360

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 241     tgcacatggcagtctttgca 260
               ||||||||||||||||||||
Sbjct: 2050300 tgcacatggcagtctttgca 2050319
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>gb|AY111409.1| Zea mays CL6947_1 mRNA sequence
          Length = 490

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 28/31 (90%)
 Strand = Plus / Minus

                                          
Query: 154 cctgccccgcggcttcgncctgctcgcctcc 184
           |||||||| |||| ||| |||||||||||||
Sbjct: 372 cctgccccacggcctcggcctgctcgcctcc 342


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,888,062
Number of Sequences: 3902068
Number of extensions: 1888062
Number of successful extensions: 29900
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29832
Number of HSP's gapped (non-prelim): 67
length of query: 337
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 315
effective length of database: 17,147,199,772
effective search space: 5401367928180
effective search space used: 5401367928180
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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