ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd15n06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ALGI_AZOVI (O52196) Probable poly(beta-D-mannuronate) O-acetylas... 31 2.4

>ALGI_AZOVI (O52196) Probable poly(beta-D-mannuronate) O-acetylase (EC 2.3.1.-)|
           (Alginate biosynthesis protein algI)
          Length = 499

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -1

Query: 377 HGGWLINQSRLWLDSAAYVIRLCIWVLVYLFVRLGGLYTR 258
           HG WL  +  L +D+A   IR   WV  +L V +G +  R
Sbjct: 335 HGTWLAIERALRIDAAPKTIRPLRWVFAFLLVMVGWVIFR 374


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,451,136
Number of Sequences: 219361
Number of extensions: 1746354
Number of successful extensions: 5050
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 4490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4890
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5253413348
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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