Clone Name | rbasd16c04 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_470969.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 5220 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 401 acattctcatgcaaagcttca 421 ||||||||||||||||||||| Sbjct: 5039 acattctcatgcaaagcttca 5019
>gb|AC123075.5| Mus musculus BAC clone RP23-181C16 from chromosome 3, complete sequence Length = 198063 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 498 ttggtgtttctatttcagttt 518 ||||||||||||||||||||| Sbjct: 167879 ttggtgtttctatttcagttt 167899
>ref|XM_802067.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053504151.39) partial mRNA Length = 2094 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 187 tgcaatgtccatagcaaccaa 207 ||||||||||||||||||||| Sbjct: 165 tgcaatgtccatagcaaccaa 185
>ref|XM_806678.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053509461.30) partial mRNA Length = 2094 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 187 tgcaatgtccatagcaaccaa 207 ||||||||||||||||||||| Sbjct: 165 tgcaatgtccatagcaaccaa 185
>emb|AL731585.5| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0009K15, complete sequence Length = 185021 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 401 acattctcatgcaaagcttca 421 ||||||||||||||||||||| Sbjct: 90534 acattctcatgcaaagcttca 90514
>emb|AL662935.3|OSJN00146 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0094O15, complete sequence Length = 144778 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 401 acattctcatgcaaagcttca 421 ||||||||||||||||||||| Sbjct: 86662 acattctcatgcaaagcttca 86682
>gb|AC025254.14| Homo sapiens 12 BAC RP11-1041F24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 160867 Score = 42.1 bits (21), Expect = 2.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 509 atttcagtttgcacatctctaatta 533 |||||||||||||||| |||||||| Sbjct: 81692 atttcagtttgcacatttctaatta 81668
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 401 acattctcatgcaaagcttca 421 ||||||||||||||||||||| Sbjct: 11769078 acattctcatgcaaagcttca 11769058 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 401 acattctcatgcaaagcttca 421 ||||||||||||||||||||| Sbjct: 290842 acattctcatgcaaagcttca 290862
>gb|AC096651.1| Homo sapiens BAC clone RP11-16J15 from 4, complete sequence Length = 158661 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 734 gcatcatgctctgtcaccttt 754 ||||||||||||||||||||| Sbjct: 42623 gcatcatgctctgtcaccttt 42643
>emb|AL935175.6| Mouse DNA sequence from clone RP23-397E13 on chromosome 2, complete sequence Length = 158592 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 276 cctggacattctcatgcaaag 296 ||||||||||||||||||||| Sbjct: 62906 cctggacattctcatgcaaag 62886
>emb|AL772318.6| Mouse DNA sequence from clone RP23-77I17 on chromosome 4, complete sequence Length = 249534 Score = 42.1 bits (21), Expect = 2.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 644 tgagaagcttcatgctctgccacct 668 |||||||||||| |||||||||||| Sbjct: 126850 tgagaagcttcaagctctgccacct 126874 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,984,521 Number of Sequences: 3902068 Number of extensions: 6984521 Number of successful extensions: 127114 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 127010 Number of HSP's gapped (non-prelim): 104 length of query: 771 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 748 effective length of database: 17,143,297,704 effective search space: 12823186682592 effective search space used: 12823186682592 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)