ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd16c01 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY329624.1| Rattus norvegicus cellular nucleic acid binding protein (Znf9) gene, complete cds Length = 8855 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 435 atatatgctaggagcaaatag 455 ||||||||||||||||||||| Sbjct: 1426 atatatgctaggagcaaatag 1406
>gb|AY329616.1| Rattus norvegicus Znf9 gene, intron 1 Length = 5847 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 435 atatatgctaggagcaaatag 455 ||||||||||||||||||||| Sbjct: 1275 atatatgctaggagcaaatag 1255
>gb|AC126019.16| Medicago truncatula clone mth2-22p22, complete sequence Length = 130044 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 294 aaaatgatgaagaaatgaaaa 314 ||||||||||||||||||||| Sbjct: 24741 aaaatgatgaagaaatgaaaa 24721
>gb|AC119418.5| Medicago truncatula clone mth1-23l16, complete sequence Length = 112695 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 294 aaaatgatgaagaaatgaaaa 314 ||||||||||||||||||||| Sbjct: 80036 aaaatgatgaagaaatgaaaa 80016
>gb|AC162931.4| Mus musculus BAC clone RP23-213P10 from chromosome 9, complete sequence Length = 204861 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 338 ataacaaaagcacaatactat 358 ||||||||||||||||||||| Sbjct: 53747 ataacaaaagcacaatactat 53727
>gb|AC007207.22| Homo sapiens 12 BAC RP11-320N7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 191877 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 235 cgccagttgtgcttgtgtgaa 255 ||||||||||||||||||||| Sbjct: 171220 cgccagttgtgcttgtgtgaa 171240
>ref|NM_004654.3| Homo sapiens ubiquitin specific peptidase 9, Y-linked (fat facets-like, Drosophila) (USP9Y), mRNA Length = 10048 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 atgatgaagaaatgaaaaat 316 |||||||||||||||||||| Sbjct: 6686 atgatgaagaaatgaaaaat 6705
>gb|AY773015.1| Pan troglodytes USP9Y mRNA, complete cds Length = 6506 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 atgatgaagaaatgaaaaat 316 |||||||||||||||||||| Sbjct: 4744 atgatgaagaaatgaaaaat 4763
>ref|XM_879216.1| PREDICTED: Bos taurus similar to Rab GTPase binding effector protein 2 (Rabaptin-5beta), transcript variant 4 (LOC511736), mRNA Length = 1761 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 gatgagcacatggcatgccc 283 |||||||||||||||||||| Sbjct: 655 gatgagcacatggcatgccc 636
>ref|XM_416773.1| PREDICTED: Gallus gallus similar to ubiquitin specific protease 9, X-linked isoform 2; Drosophila fat facets related, X-linked; ubiquitin specific protease 9, X chromosome (fat facets-like Drosophila) (LOC418569), mRNA Length = 5104 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 atgatgaagaaatgaaaaat 316 |||||||||||||||||||| Sbjct: 1883 atgatgaagaaatgaaaaat 1902
>gb|AC112929.12| Mus musculus chromosome 14, clone RP23-432A7, complete sequence Length = 181674 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 318 tgaaagtacacaaaaacaagataa 341 ||||||||||||||||||| |||| Sbjct: 12986 tgaaagtacacaaaaacaaaataa 12963
>gb|AC145592.3| Mus musculus BAC clone RP24-335F16 from chromosome y, complete sequence Length = 167384 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 atgatgaagaaatgaaaaat 316 |||||||||||||||||||| Sbjct: 22744 atgatgaagaaatgaaaaat 22725
>gb|AC121137.18| Mus musculus chromosome 14, clone RP23-406K12, complete sequence Length = 164557 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 295 aaatgatgaagaaatgaaaa 314 |||||||||||||||||||| Sbjct: 31976 aaatgatgaagaaatgaaaa 31957
>gb|AC124401.3| Mus musculus BAC clone RP24-362C2 from chromosome 19, complete sequence Length = 138622 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 caatacttggtcacaagggc 167 |||||||||||||||||||| Sbjct: 75193 caatacttggtcacaagggc 75174
>gb|AC146254.2| Pan troglodytes BAC clone CH251-128L22 from Y, complete sequence Length = 177240 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 atgatgaagaaatgaaaaat 316 |||||||||||||||||||| Sbjct: 124077 atgatgaagaaatgaaaaat 124058
>gb|AC113597.12| Mus musculus chromosome 1, clone RP23-375F6, complete sequence Length = 224996 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 cacagctaaaatgatgaaga 306 |||||||||||||||||||| Sbjct: 114393 cacagctaaaatgatgaaga 114412
>ref|XM_730693.1| Plasmodium chabaudi chabaudi hypothetical protein (PC301605.00.0) partial mRNA Length = 702 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 295 aaatgatgaagaaatgaaaaatgt 318 |||||||||||||||| ||||||| Sbjct: 159 aaatgatgaagaaatggaaaatgt 182
>ref|XM_741085.1| Plasmodium chabaudi chabaudi coatamer protein, beta subunit (PC000888.02.0) partial mRNA Length = 3750 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 295 aaatgatgaagaaatgaaaaatgt 318 |||||||||||||||| ||||||| Sbjct: 2640 aaatgatgaagaaatggaaaatgt 2663
>ref|XM_732758.1| Plasmodium chabaudi chabaudi hypothetical protein (PC404893.00.0) partial mRNA Length = 513 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 294 aaaatgatgaagaaatgaaaaatg 317 ||||| |||||||||||||||||| Sbjct: 302 aaaattatgaagaaatgaaaaatg 325
>emb|CR792428.10| Zebrafish DNA sequence from clone CH211-148F24 in linkage group 3, complete sequence Length = 120268 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 cacacagctaaaatgatgaa 304 |||||||||||||||||||| Sbjct: 44042 cacacagctaaaatgatgaa 44061
>gb|AC139356.17| Medicago truncatula clone mth2-12c11, complete sequence Length = 120921 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 caaaaacaagataacaaaag 347 |||||||||||||||||||| Sbjct: 116599 caaaaacaagataacaaaag 116580
>emb|AL445217.3| Human DNA sequence from clone RP11-335G18 on chromosome 13 Contains the 5' end of the EPSTI1 gene for epithelial stromal interaction 1 (breast) and the gene for a DNAJ domain-containing protein (MCJ), complete sequence Length = 161699 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 agaaatgaaaaatgtgaaag 323 |||||||||||||||||||| Sbjct: 136292 agaaatgaaaaatgtgaaag 136273
>emb|AL391062.16| Human DNA sequence from clone RP5-887A10 on chromosome 1 Contains the 3' end of a novel gene, complete sequence Length = 65255 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 509 atacacacaataaaaagaga 528 |||||||||||||||||||| Sbjct: 58652 atacacacaataaaaagaga 58633
>gb|AE014838.1| Plasmodium falciparum 3D7 chromosome 11 section 3 of 8 of the complete sequence Length = 250029 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 295 aaatgatgaagaaatgaaaa 314 |||||||||||||||||||| Sbjct: 100754 aaatgatgaagaaatgaaaa 100735
>emb|AL139147.7| Human DNA sequence from clone RP4-598P13 on chromosome 1 Contains part of a novel gene (DKFZp761D221), complete sequence Length = 97455 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 aaaatgatgaagaaatgaaa 313 |||||||||||||||||||| Sbjct: 70107 aaaatgatgaagaaatgaaa 70088
>emb|AL096706.10|HSJ684F13 Human DNA sequence from clone RP4-684F13 on chromosome 10 Contains the 5' end of the NRG3 gene for neuregulin 3 and two CpG islands, complete sequence Length = 117230 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 306 aaatgaaaaatgtgaaagta 325 |||||||||||||||||||| Sbjct: 3200 aaatgaaaaatgtgaaagta 3181
>emb|AL023285.1|HS474A14 Human DNA sequence from clone RP3-474A14 on chromosome 1q24.1-25.2 Contains the 5' end of the TNR gene for tenascin R (restrictin, janusin), complete sequence Length = 107352 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 371 tacttttaggaagtgcccat 390 |||||||||||||||||||| Sbjct: 85661 tacttttaggaagtgcccat 85642
>emb|Y13619.1|HSDFFRYRT Homo sapiens mRNA for DFFRY protein, rare transcript Length = 7947 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 atgatgaagaaatgaaaaat 316 |||||||||||||||||||| Sbjct: 5798 atgatgaagaaatgaaaaat 5817
>emb|Y13618.1|HSDFFRYAT Homo sapiens mRNA for DFFRY protein, abundant transcript Length = 7932 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 atgatgaagaaatgaaaaat 316 |||||||||||||||||||| Sbjct: 5798 atgatgaagaaatgaaaaat 5817
>emb|AJ307017.1|MMU307017 Mus musculus mRNA for putative ubiquitin-specific protease (Usp9y gene) Length = 8117 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 atgatgaagaaatgaaaaat 316 |||||||||||||||||||| Sbjct: 6159 atgatgaagaaatgaaaaat 6178
>dbj|BS000552.1| Pan troglodytes chromosome Y clone:PTB-302F24, complete sequences Length = 157728 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 atgatgaagaaatgaaaaat 316 |||||||||||||||||||| Sbjct: 20376 atgatgaagaaatgaaaaat 20395
>dbj|BS000562.1| Pan troglodytes chromosome Y clone:PTB-575P16, complete sequences Length = 144349 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 atgatgaagaaatgaaaaat 316 |||||||||||||||||||| Sbjct: 139316 atgatgaagaaatgaaaaat 139335
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence Length = 23952694 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 atgatgaagaaatgaaaaat 316 |||||||||||||||||||| Sbjct: 17951982 atgatgaagaaatgaaaaat 17952001
>emb|AL929036.8| Mouse DNA sequence from clone RP24-548P4 on chromosome 2, complete sequence Length = 100285 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 tagtccacaacaatggcagc 78 |||||||||||||||||||| Sbjct: 1619 tagtccacaacaatggcagc 1600
>gb|AF288920.1|AF288920 Flaveria pringlei putative cytosolic NADP-malic enzyme (CytMeA) mRNA, complete cds Length = 2044 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 319 gaaagtacacaaaaacaagataacaaaa 346 ||||| |||||||| ||||||||||||| Sbjct: 1928 gaaagaacacaaaagcaagataacaaaa 1901
>gb|AC090568.5| Homo sapiens chromosome 8, clone RP11-69I13, complete sequence Length = 166398 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 294 aaaatgatgaagaaatgaaaaatgtgaa 321 ||||| ||||||||||||||||| |||| Sbjct: 81842 aaaatcatgaagaaatgaaaaatttgaa 81869
>gb|AC151520.3| Medicago truncatula chromosome 2 BAC clone mte1-34o12, complete sequence Length = 105113 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 caaaaacaagataacaaaag 347 |||||||||||||||||||| Sbjct: 10975 caaaaacaagataacaaaag 10956
>gb|AC020918.6| Homo sapiens chromosome 5 clone CTD-2020C3, complete sequence Length = 175425 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 505 cattatacacacaataaaaa 524 |||||||||||||||||||| Sbjct: 41340 cattatacacacaataaaaa 41359
>gb|AC018756.5| Homo sapiens chromosome 5 clone CTC-534K6, complete sequence Length = 122005 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 505 cattatacacacaataaaaa 524 |||||||||||||||||||| Sbjct: 9111 cattatacacacaataaaaa 9130
>gb|AC008782.6|AC008782 Homo sapiens chromosome 5 clone CTD-2026D23, complete sequence Length = 167275 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 505 cattatacacacaataaaaa 524 |||||||||||||||||||| Sbjct: 40464 cattatacacacaataaaaa 40445
>gb|AY591391.1| Gorilla gorilla USP9Y (USP9Y) gene, partial cds Length = 1121 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 atgatgaagaaatgaaaaat 316 |||||||||||||||||||| Sbjct: 357 atgatgaagaaatgaaaaat 376
>gb|AY591390.1| Hylobates lar USP9Y (USP9Y) gene, partial cds Length = 1128 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 atgatgaagaaatgaaaaat 316 |||||||||||||||||||| Sbjct: 357 atgatgaagaaatgaaaaat 376
>gb|AY591389.1| Eulemur fulvus USP9Y (USP9Y) gene, partial cds Length = 1220 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 atgatgaagaaatgaaaaat 316 |||||||||||||||||||| Sbjct: 357 atgatgaagaaatgaaaaat 376
>gb|AY591388.1| Pongo pygmaeus USP9Y (USP9Y) gene, partial cds Length = 1151 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 atgatgaagaaatgaaaaat 316 |||||||||||||||||||| Sbjct: 357 atgatgaagaaatgaaaaat 376
>gb|AY591387.1| Macaca fascicularis USP9Y (USP9Y) gene, partial cds Length = 1147 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 atgatgaagaaatgaaaaat 316 |||||||||||||||||||| Sbjct: 357 atgatgaagaaatgaaaaat 376
>gb|AY591386.1| Ateles geoffroyi USP9Y (USP9Y) pseudogene, partial sequence Length = 1127 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 atgatgaagaaatgaaaaat 316 |||||||||||||||||||| Sbjct: 357 atgatgaagaaatgaaaaat 376
>gb|AC016608.5|AC016608 Homo sapiens chromosome 5 clone CTD-2170F21, complete sequence Length = 113626 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 505 cattatacacacaataaaaa 524 |||||||||||||||||||| Sbjct: 89400 cattatacacacaataaaaa 89381
>gb|AC087070.2|AC087070 Homo sapiens chromosome 7 clone RP11-100L10, complete sequence Length = 41593 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 aaaacaagataacaaaagca 349 |||||||||||||||||||| Sbjct: 35691 aaaacaagataacaaaagca 35672
>gb|AC009107.11| Homo sapiens chromosome 16 clone RP11-459F6, complete sequence Length = 208220 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 306 aaatgaaaaatgtgaaagta 325 |||||||||||||||||||| Sbjct: 91298 aaatgaaaaatgtgaaagta 91317
>ref|NM_001009110.1| Pan troglodytes ubiquitin-specific protease 9, Y-linked (USP9Y), mRNA Length = 6506 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 atgatgaagaaatgaaaaat 316 |||||||||||||||||||| Sbjct: 4744 atgatgaagaaatgaaaaat 4763
>gb|AC002531.1|AC002531 Homo sapiens chromosome Y, clone 486_O_8, complete sequence Length = 197900 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 atgatgaagaaatgaaaaat 316 |||||||||||||||||||| Sbjct: 144197 atgatgaagaaatgaaaaat 144216
>emb|AL929064.11| Mouse DNA sequence from clone RP23-442A7 on chromosome 2, complete sequence Length = 121402 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 tagtccacaacaatggcagc 78 |||||||||||||||||||| Sbjct: 121021 tagtccacaacaatggcagc 121002
>gb|AC154598.2| Mus musculus BAC clone RP23-356P6 from 14, complete sequence Length = 206646 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 318 tgaaagtacacaaaaacaagataa 341 ||||||||||||||||||| |||| Sbjct: 167694 tgaaagtacacaaaaacaaaataa 167671
>gb|AC157472.3| Medicago truncatula chromosome 7 BAC clone mth2-41h16, complete sequence Length = 114287 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 tgaagaaatgaaaaatgtga 320 |||||||||||||||||||| Sbjct: 107027 tgaagaaatgaaaaatgtga 107046
>gb|AF000986.2|HSAF000986 Homo sapiens chromosome Y ubiquitin specific protease 9 (USP9Y) mRNA, complete cds Length = 9372 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 atgatgaagaaatgaaaaat 316 |||||||||||||||||||| Sbjct: 6686 atgatgaagaaatgaaaaat 6705
>gb|AC145393.4| Mus musculus BAC clone RP24-208N6 from Y, complete sequence Length = 167299 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 atgatgaagaaatgaaaaat 316 |||||||||||||||||||| Sbjct: 124028 atgatgaagaaatgaaaaat 124009
>emb|AL824708.5| Zebrafish DNA sequence from clone CH211-241F4 in linkage group 12, complete sequence Length = 116139 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 cacacagctaaaatgatgaa 304 |||||||||||||||||||| Sbjct: 45099 cacacagctaaaatgatgaa 45118
>emb|AL355101.2|CNS05TCK Human chromosome 14 DNA sequence BAC R-686H21 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 164380 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 509 atacacacaataaaaagaga 528 |||||||||||||||||||| Sbjct: 137380 atacacacaataaaaagaga 137361
>gb|AC151478.1| Mus musculus BAC clone RP23-83K12 from 19, complete sequence Length = 219132 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 caatacttggtcacaagggc 167 |||||||||||||||||||| Sbjct: 61998 caatacttggtcacaagggc 61979
>ref|NM_148943.1| Mus musculus ubiquitin specific peptidase 9, Y chromosome (Usp9y), mRNA Length = 8117 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 atgatgaagaaatgaaaaat 316 |||||||||||||||||||| Sbjct: 6159 atgatgaagaaatgaaaaat 6178
>gb|AC078872.13| Homo sapiens 12q BAC RP11-542G14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 166585 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 305 gaaatgaaaaatgtgaaagt 324 |||||||||||||||||||| Sbjct: 120239 gaaatgaaaaatgtgaaagt 120258 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,267,580 Number of Sequences: 3902068 Number of extensions: 5267580 Number of successful extensions: 109386 Number of sequences better than 10.0: 61 Number of HSP's better than 10.0 without gapping: 61 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 109241 Number of HSP's gapped (non-prelim): 145 length of query: 587 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 564 effective length of database: 17,143,297,704 effective search space: 9668819905056 effective search space used: 9668819905056 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
