ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd15m22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CYB_STRTC (Q36551) Cytochrome b 28 4.8
2CYB_YARLI (Q9B6D0) Cytochrome b 28 6.2
3CYB_MYCVI (Q36445) Cytochrome b 28 8.2

>CYB_STRTC (Q36551) Cytochrome b|
          Length = 389

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 218 THGSFSSFFAVWV*ASRGRXVRXGAVASSRIQGWSKG 108
           TH + +SFF ++V A  GR +   +  S R+  WS G
Sbjct: 81  THANVASFFFIFVYAHIGRGLYYNSYKSPRVLLWSIG 117



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>CYB_YARLI (Q9B6D0) Cytochrome b|
          Length = 385

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -1

Query: 215 HGSFSSFFAVWV*ASRGRXVRXGAVASSRIQGWSKG 108
           H + +SFF + + A  GR +  G+  + R+  WS G
Sbjct: 82  HANTASFFFICIYAHMGRNIYYGSYKTPRVLPWSIG 117



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>CYB_MYCVI (Q36445) Cytochrome b|
          Length = 389

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -1

Query: 239 YYLRGGVTHGSFSSFFAVWV*ASRGRXVRXGAVASSRIQGWSKG 108
           Y LR   TH + +SFF +++    GR +  G+  + R+  WS G
Sbjct: 76  YILR--YTHANVASFFFIFIYVHIGRGLWYGSYRAPRVLLWSIG 117


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,815,336
Number of Sequences: 219361
Number of extensions: 513055
Number of successful extensions: 1274
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1274
length of database: 80,573,946
effective HSP length: 59
effective length of database: 67,631,647
effective search space used: 1623159528
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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