ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd16b18 |
|---|---|
| Clone Library Name | barley_pub |
>RNF4_RAT (O88846) RING finger protein 4 (SNURF)| Length = 194 Score = 55.8 bits (133), Expect = 1e-07 Identities = 23/60 (38%), Positives = 38/60 (63%), Gaps = 7/60 (11%) Frame = -2 Query: 398 SCPVCMN---ELVDPS----STICGHIFCQKCIQASIQAQSKCPTCRRTLTVNCFHRVYL 240 SCP+CM+ E+V ST CGH+FC +C++ S++ + CPTCR+ + +H +Y+ Sbjct: 135 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 194
>RNF4_MOUSE (Q9QZS2) RING finger protein 4| Length = 194 Score = 55.8 bits (133), Expect = 1e-07 Identities = 23/60 (38%), Positives = 38/60 (63%), Gaps = 7/60 (11%) Frame = -2 Query: 398 SCPVCMN---ELVDPS----STICGHIFCQKCIQASIQAQSKCPTCRRTLTVNCFHRVYL 240 SCP+CM+ E+V ST CGH+FC +C++ S++ + CPTCR+ + +H +Y+ Sbjct: 135 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 194
>RNF4_HUMAN (P78317) RING finger protein 4| Length = 190 Score = 55.8 bits (133), Expect = 1e-07 Identities = 23/60 (38%), Positives = 38/60 (63%), Gaps = 7/60 (11%) Frame = -2 Query: 398 SCPVCMN---ELVDPS----STICGHIFCQKCIQASIQAQSKCPTCRRTLTVNCFHRVYL 240 SCP+CM+ E+V ST CGH+FC +C++ S++ + CPTCR+ + +H +Y+ Sbjct: 131 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 190
>RFWD2_MOUSE (Q9R1A8) Ring finger and WD repeat domain protein 2 (EC 6.3.2.-)| (Ubiquitin-protein ligase COP1) (Constitutive photomorphogenesis protein 1 homolog) (mCOP1) Length = 733 Score = 50.8 bits (120), Expect = 3e-06 Identities = 23/62 (37%), Positives = 35/62 (56%) Frame = -2 Query: 467 IPATNRLLKSRAPVKEVRNEPKFSCPVCMNELVDPSSTICGHIFCQKCIQASIQAQSKCP 288 +P N LL S ++ N+ F CP+C + + + T CGH FC KCI S++ ++CP Sbjct: 119 VPLCNGLLNS---YEDKSND--FVCPICFDMIEEAYMTKCGHSFCYKCIHQSLEDNNRCP 173 Query: 287 TC 282 C Sbjct: 174 KC 175
>BRE1_CANAL (Q5A4X0) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-)| Length = 681 Score = 50.4 bits (119), Expect = 4e-06 Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 2/75 (2%) Frame = -2 Query: 458 TNRLLKS-RAPVKEVRNEPKFSCPVCMNELVDPSSTICGHIFCQKCIQASIQAQ-SKCPT 285 TN LL+ ++ +R+ K C VC D + T+CGH+FC KC Q + A+ +CP+ Sbjct: 609 TNSLLQEDEQQLEALRSIAK--CSVCSKNWKDTAITVCGHVFCSKCTQERLAARLRRCPS 666 Query: 284 CRRTLTVNCFHRVYL 240 C R + N ++L Sbjct: 667 CNRGFSANDLLSIHL 681
>BRE1B_MOUSE (Q3U319) Ubiquitin-protein ligase BRE1B (EC 6.3.2.-) (BRE1-B) (RING| finger protein 40) Length = 1001 Score = 50.4 bits (119), Expect = 4e-06 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Frame = -2 Query: 404 KFSCPVCMNELVDPSSTICGHIFCQKCIQASIQA-QSKCPTCRRTLTVNCFHRVYL 240 + +CP C D T C H+FC +C++ +A Q KCP C + FHRVY+ Sbjct: 945 RLTCPCCNTRKKDAVLTKCFHVFCFECVRGRYEARQRKCPKCNAAFGAHDFHRVYI 1000
>BRE1B_RAT (Q8CJB9) Ubiquitin-protein ligase BRE1B (EC 6.3.2.-) (BRE1-B) (RING| finger protein 40) (Syntaxin-1-interacting RING finger protein) (Protein staring) Length = 1002 Score = 50.4 bits (119), Expect = 4e-06 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Frame = -2 Query: 404 KFSCPVCMNELVDPSSTICGHIFCQKCIQASIQA-QSKCPTCRRTLTVNCFHRVYL 240 + +CP C D T C H+FC +C++ +A Q KCP C + FHRVY+ Sbjct: 946 RLTCPCCNTRKKDAVLTKCFHVFCFECVRGRYEARQRKCPKCNAAFGAHDFHRVYI 1001
>COP1_ARATH (P43254) Ubiquitin-protein ligase COP1 (EC 6.3.2.-) (Constitutive| photomorphogenesis protein 1) Length = 675 Score = 50.1 bits (118), Expect = 6e-06 Identities = 21/52 (40%), Positives = 29/52 (55%) Frame = -2 Query: 395 CPVCMNELVDPSSTICGHIFCQKCIQASIQAQSKCPTCRRTLTVNCFHRVYL 240 CP+CM + D T CGH FC CI ++ +S CP C + LT N + +L Sbjct: 52 CPICMQIIKDAFLTACGHSFCYMCIITHLRNKSDCPCCSQHLTNNQLYPNFL 103
>BRE1B_PONPY (Q5RAU7) Ubiquitin-protein ligase BRE1B (EC 6.3.2.-) (BRE1-B) (RING| finger protein 40) Length = 1001 Score = 50.1 bits (118), Expect = 6e-06 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Frame = -2 Query: 404 KFSCPVCMNELVDPSSTICGHIFCQKCIQASIQA-QSKCPTCRRTLTVNCFHRVYL 240 + +CP C D T C H+FC +C++ +A Q KCP C + FHR+Y+ Sbjct: 945 RLTCPCCNTRKKDAVLTKCFHVFCFECVRGRYEARQRKCPKCNAAFGAHDFHRIYI 1000
>BRE1B_MACFA (Q4R7K7) Ubiquitin-protein ligase BRE1B (EC 6.3.2.-) (BRE1-B) (RING| finger protein 40) Length = 1001 Score = 50.1 bits (118), Expect = 6e-06 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Frame = -2 Query: 404 KFSCPVCMNELVDPSSTICGHIFCQKCIQASIQA-QSKCPTCRRTLTVNCFHRVYL 240 + +CP C D T C H+FC +C++ +A Q KCP C + FHR+Y+ Sbjct: 945 RLTCPCCNTRKKDAVLTKCFHVFCFECVRGRYEARQRKCPKCNAAFGAHDFHRIYI 1000
>BRE1B_HUMAN (O75150) Ubiquitin-protein ligase BRE1B (EC 6.3.2.-) (BRE1-B) (RING| finger protein 40) (95 kDa retinoblastoma-associated protein) (RBP95) Length = 1001 Score = 50.1 bits (118), Expect = 6e-06 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Frame = -2 Query: 404 KFSCPVCMNELVDPSSTICGHIFCQKCIQASIQA-QSKCPTCRRTLTVNCFHRVYL 240 + +CP C D T C H+FC +C++ +A Q KCP C + FHR+Y+ Sbjct: 945 RLTCPCCNTRKKDAVLTKCFHVFCFECVRGRYEARQRKCPKCNAAFGAHDFHRIYI 1000
>TRI22_HUMAN (Q8IYM9) Tripartite motif protein 22 (RING finger protein 94) (50| kDa-stimulated trans-acting factor) (Staf-50) Length = 498 Score = 50.1 bits (118), Expect = 6e-06 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 7/51 (13%) Frame = -2 Query: 410 EPKFSCPVCMNELVDPSSTICGHIFCQKCIQASI-------QAQSKCPTCR 279 E + +CP+C+ L +P S CGH FCQ CI A I + +S CP C+ Sbjct: 10 EKEVTCPICLELLTEPLSLDCGHSFCQACITAKIKESVIISRGESSCPVCQ 60
>RN125_MOUSE (Q9D9R0) RING finger protein 125 (EC 6.3.2.-)| Length = 232 Score = 49.7 bits (117), Expect = 7e-06 Identities = 22/46 (47%), Positives = 27/46 (58%), Gaps = 2/46 (4%) Frame = -2 Query: 401 FSCPVCMNELVDPSSTICGHIFCQKCIQASIQAQSK--CPTCRRTL 270 F C VC+ L P T CGH+FC+ CI SI+ +K CP CR L Sbjct: 34 FDCSVCLEVLHQPVRTRCGHVFCRSCIATSIKNNNKWTCPYCRAYL 79
>COP1_PEA (P93471) Ubiquitin ligase protein COP1 (EC 6.3.2.-) (Constitutive| photomorphogenesis protein 1) Length = 672 Score = 49.3 bits (116), Expect = 9e-06 Identities = 20/45 (44%), Positives = 25/45 (55%) Frame = -2 Query: 401 FSCPVCMNELVDPSSTICGHIFCQKCIQASIQAQSKCPTCRRTLT 267 F CP+CM + D T CGH FC CI ++ +S CP C LT Sbjct: 45 FLCPICMQIIKDAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLT 89
>RO52_HUMAN (P19474) 52 kDa Ro protein (Sjoegren syndrome type A antigen)| (SS-A) (Ro(SS-A)) (52 kDa ribonucleoprotein autoantigen Ro/SS-A) (Tripartite motif protein 21) (RING finger protein 81) Length = 475 Score = 49.3 bits (116), Expect = 9e-06 Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 1/42 (2%) Frame = -2 Query: 398 SCPVCMNELVDPSSTICGHIFCQKCI-QASIQAQSKCPTCRR 276 +CP+C++ V+P S CGH FCQ+CI Q S CP CR+ Sbjct: 15 TCPICLDPFVEPVSIECGHSFCQECISQVGKGGGSVCPVCRQ 56
>BRE1A_CHICK (Q5ZLS3) Ubiquitin-protein ligase BRE1A (EC 6.3.2.-) (BRE1-A) (RING| finger protein 20) Length = 984 Score = 49.3 bits (116), Expect = 9e-06 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 2/65 (3%) Frame = -2 Query: 428 VKEVRN-EPKFSCPVCMNELVDPSSTICGHIFCQKCIQASIQA-QSKCPTCRRTLTVNCF 255 ++E+++ + + +CP C D T C H+FC +C++ Q KCP C N F Sbjct: 919 MEEIKDYKARLTCPCCNMRKKDAVLTKCFHVFCFECVKTRYDTRQRKCPKCNAAFGANDF 978 Query: 254 HRVYL 240 HR+Y+ Sbjct: 979 HRIYI 983
>RFWD2_HUMAN (Q8NHY2) Ring finger and WD repeat domain protein 2 (EC 6.3.2.-)| (Ubiquitin-protein ligase COP1) (Constitutive photomorphogenesis protein 1 homolog) (hCOP1) Length = 731 Score = 49.3 bits (116), Expect = 9e-06 Identities = 17/40 (42%), Positives = 25/40 (62%) Frame = -2 Query: 401 FSCPVCMNELVDPSSTICGHIFCQKCIQASIQAQSKCPTC 282 F CP+C + + + T CGH FC KCI S++ ++CP C Sbjct: 134 FVCPICFDMIEEAYMTKCGHSFCYKCIHQSLEDNNRCPKC 173
>BRE1A_HUMAN (Q5VTR2) Ubiquitin-protein ligase BRE1A (EC 6.3.2.-) (BRE1-A) (RING| finger protein 20) Length = 975 Score = 49.3 bits (116), Expect = 9e-06 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 2/65 (3%) Frame = -2 Query: 428 VKEVRN-EPKFSCPVCMNELVDPSSTICGHIFCQKCIQASIQA-QSKCPTCRRTLTVNCF 255 ++E+++ + + +CP C D T C H+FC +C++ Q KCP C N F Sbjct: 910 MEEIKDYKARLTCPCCNMRKKDAVLTKCFHVFCFECVKTRYDTRQRKCPKCNAAFGANDF 969 Query: 254 HRVYL 240 HR+Y+ Sbjct: 970 HRIYI 974
>BRE1A_MOUSE (Q5DTM8) Ubiquitin-protein ligase BRE1A (EC 6.3.2.-) (BRE1-A) (RING| finger protein 20) Length = 973 Score = 49.3 bits (116), Expect = 9e-06 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 2/65 (3%) Frame = -2 Query: 428 VKEVRN-EPKFSCPVCMNELVDPSSTICGHIFCQKCIQASIQA-QSKCPTCRRTLTVNCF 255 ++E+++ + + +CP C D T C H+FC +C++ Q KCP C N F Sbjct: 908 MEEIKDYKARLTCPCCNMRKKDAVLTKCFHVFCFECVKTRYDTRQRKCPKCNAAFGANDF 967 Query: 254 HRVYL 240 HR+Y+ Sbjct: 968 HRIYI 972
>PEX10_PICAN (Q00940) Peroxisome assembly protein 10 (Peroxin-10) (Peroxisome| biogenesis factor 10) (Peroxisome assembly protein PER8) Length = 295 Score = 48.9 bits (115), Expect = 1e-05 Identities = 17/44 (38%), Positives = 28/44 (63%) Frame = -2 Query: 410 EPKFSCPVCMNELVDPSSTICGHIFCQKCIQASIQAQSKCPTCR 279 E +C +C++ + DPS CGH+FC KC+ ++ + +CP CR Sbjct: 240 EASRTCMLCLSPMKDPSCGECGHVFCWKCVLDWVKERQECPLCR 283
>PEX10_MACFA (Q8HXW8) Peroxisome assembly protein 10 (Peroxin-10) (Peroxisome| biogenesis factor 10) Length = 326 Score = 48.5 bits (114), Expect = 2e-05 Identities = 17/39 (43%), Positives = 27/39 (69%) Frame = -2 Query: 395 CPVCMNELVDPSSTICGHIFCQKCIQASIQAQSKCPTCR 279 C +C+ E P++T CGH+FC +CI A ++++CP CR Sbjct: 273 CTLCLEERRHPTATPCGHLFCWECITAWCSSKAECPLCR 311
>PEX10_HUMAN (O60683) Peroxisome assembly protein 10 (Peroxin-10) (Peroxisome| biogenesis factor 10) (RING finger protein 69) Length = 326 Score = 48.5 bits (114), Expect = 2e-05 Identities = 17/39 (43%), Positives = 27/39 (69%) Frame = -2 Query: 395 CPVCMNELVDPSSTICGHIFCQKCIQASIQAQSKCPTCR 279 C +C+ E P++T CGH+FC +CI A ++++CP CR Sbjct: 273 CTLCLEERRHPTATPCGHLFCWECITAWCSSKAECPLCR 311
>NF7B_XENLA (Q92021) Nuclear factor 7, brain (xNF7) (xNF7-B)| Length = 609 Score = 48.5 bits (114), Expect = 2e-05 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 2/48 (4%) Frame = -2 Query: 404 KFSCPVCMNELVDPSSTICGHIFCQKCIQASIQAQSK--CPTCRRTLT 267 + +CP+C+ DP CGH FC+ CI + + QS CP CR ++T Sbjct: 142 ELTCPLCVELFKDPVMVACGHNFCRSCIDKAWEGQSSFACPECRESIT 189
>TRI43_HUMAN (Q96BQ3) Tripartite motif protein 43| Length = 446 Score = 48.5 bits (114), Expect = 2e-05 Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 3/47 (6%) Frame = -2 Query: 410 EPKFSCPVCMNELVDPSSTICGHIFCQKCIQAS---IQAQSKCPTCR 279 + + +C +C+N LVDP + CGH FC+ C+ S Q+ + CP CR Sbjct: 10 QKELTCVICLNYLVDPVTICCGHSFCRPCLCLSWEEAQSPANCPACR 56
>YNN1_CAEEL (Q03605) Hypothetical RING finger protein T02C1.1 in chromosome III| Length = 160 Score = 48.1 bits (113), Expect = 2e-05 Identities = 17/41 (41%), Positives = 25/41 (60%) Frame = -2 Query: 401 FSCPVCMNELVDPSSTICGHIFCQKCIQASIQAQSKCPTCR 279 F C VC++ V+P CGH +C+ CI++ + KCP CR Sbjct: 6 FCCAVCLDFFVEPCIIECGHSYCRFCIESHLNINEKCPLCR 46
>TRI12_MOUSE (Q99PQ1) Tripartite motif protein 12| Length = 284 Score = 48.1 bits (113), Expect = 2e-05 Identities = 23/46 (50%), Positives = 27/46 (58%), Gaps = 6/46 (13%) Frame = -2 Query: 398 SCPVCMNELVDPSSTICGHIFCQKCIQ---ASIQAQSK---CPTCR 279 +CPVC+N +V P S CGH FCQ CI SI+ K CP CR Sbjct: 14 TCPVCLNLMVKPVSADCGHTFCQGCITLYFESIKCDKKVFICPVCR 59
>RAD18_NEUCR (P33288) Postreplication repair ubiquitin-protein ligase E3 rad-18| (EC 6.-.-.-) (UV radiation sensitivity protein 2) Length = 501 Score = 48.1 bits (113), Expect = 2e-05 Identities = 20/46 (43%), Positives = 23/46 (50%) Frame = -2 Query: 410 EPKFSCPVCMNELVDPSSTICGHIFCQKCIQASIQAQSKCPTCRRT 273 E F C VC + P T C H FC CI+ + SKCP CR T Sbjct: 29 EQAFRCHVCKDFYDSPMLTSCNHTFCSLCIRRCLSVDSKCPLCRAT 74
>ZN313_RAT (Q6J2U6) Zinc finger protein 313| Length = 229 Score = 47.8 bits (112), Expect = 3e-05 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%) Frame = -2 Query: 443 KSRAPVKEVRNEPKFSCPVCMNELVDPSSTICGHIFCQKCIQASIQAQSK-CPTCRRTL 270 +S P E +F+CPVC+ P CGH+FC C+Q ++ + C CR L Sbjct: 14 QSAKPASETDPLSRFTCPVCLEVFEKPVQVPCGHVFCSACLQECLKPKKPVCGVCRSAL 72
>ZN313_MOUSE (Q9ET26) Zinc finger protein 313| Length = 229 Score = 47.8 bits (112), Expect = 3e-05 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%) Frame = -2 Query: 443 KSRAPVKEVRNEPKFSCPVCMNELVDPSSTICGHIFCQKCIQASIQAQSK-CPTCRRTL 270 +S P E +F+CPVC+ P CGH+FC C+Q ++ + C CR L Sbjct: 14 QSAKPASETDPLSRFTCPVCLEVFEKPVQVPCGHVFCSACLQECLKPKKPVCGVCRSAL 72
>RAD18_ASHGO (Q75EN0) Postreplication repair ubiquitin-protein ligase E3 RAD18| (EC 6.-.-.-) Length = 443 Score = 47.4 bits (111), Expect = 4e-05 Identities = 19/52 (36%), Positives = 27/52 (51%) Frame = -2 Query: 395 CPVCMNELVDPSSTICGHIFCQKCIQASIQAQSKCPTCRRTLTVNCFHRVYL 240 C +C + L P T CGH FC CI+ + +S+CP C L N + +L Sbjct: 32 CHICKDMLQTPVLTQCGHTFCSLCIREYLNKESRCPLCLAELRQNMLQKEFL 83
>ZN313_PIG (Q6J1I8) Zinc finger protein 313| Length = 228 Score = 47.4 bits (111), Expect = 4e-05 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Frame = -2 Query: 431 PVKEVRNEPKFSCPVCMNELVDPSSTICGHIFCQKCIQASIQAQSK-CPTCRRTL 270 P E +F+CPVC+ P CGH+FC C+Q ++ + C CR TL Sbjct: 17 PAAEADPLGRFTCPVCLEVYEKPVQVPCGHVFCSACLQECLKPKKPVCGVCRSTL 71
>PEX10_SCHPO (Q9UUF0) Peroxisome assembly protein 10 (Peroxin-10) (Peroxisome| biogenesis factor 10) Length = 306 Score = 47.0 bits (110), Expect = 5e-05 Identities = 18/39 (46%), Positives = 24/39 (61%) Frame = -2 Query: 395 CPVCMNELVDPSSTICGHIFCQKCIQASIQAQSKCPTCR 279 C +CM + P++T CGHIFC CI +S+CP CR Sbjct: 256 CSLCMEFIHCPAATECGHIFCWSCINGWTSKKSECPLCR 294
>RN125_MACFA (Q95KF1) RING finger protein 125 (EC 6.3.2.-)| Length = 231 Score = 47.0 bits (110), Expect = 5e-05 Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 6/57 (10%) Frame = -2 Query: 422 EVRNEPK-----FSCPVCMNELVDPSSTICGHIFCQKCIQASIQAQS-KCPTCRRTL 270 E R +P+ F C VC+ L P T CGH+FC+ CI S++ CP CR L Sbjct: 22 ERRGDPELPVTSFDCAVCLEVLHQPVRTRCGHVFCRSCIATSLKNNKWTCPYCRAYL 78
>RN125_HUMAN (Q96EQ8) RING finger protein 125 (EC 6.3.2.-) (T-cell RING| activation protein 1) (TRAC-1) Length = 231 Score = 47.0 bits (110), Expect = 5e-05 Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 6/57 (10%) Frame = -2 Query: 422 EVRNEPK-----FSCPVCMNELVDPSSTICGHIFCQKCIQASIQAQS-KCPTCRRTL 270 E R +P+ F C VC+ L P T CGH+FC+ CI S++ CP CR L Sbjct: 22 ERRRDPELPVTSFDCAVCLEVLHQPVRTRCGHVFCRSCIATSLKNNKWTCPYCRAYL 78
>RAD18_EMENI (Q02398) Postreplication repair ubiquitin-protein ligase E3 rad18| (EC 6.-.-.-) Length = 443 Score = 47.0 bits (110), Expect = 5e-05 Identities = 18/44 (40%), Positives = 23/44 (52%) Frame = -2 Query: 410 EPKFSCPVCMNELVDPSSTICGHIFCQKCIQASIQAQSKCPTCR 279 E C VC + +P T C H FC CI+ + + KCPTCR Sbjct: 25 ETSLRCQVCKDFFDNPVITSCSHTFCSLCIRRCLSTEGKCPTCR 68
>BRE1_DEBHA (Q6BWW6) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-)| Length = 691 Score = 47.0 bits (110), Expect = 5e-05 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Frame = -2 Query: 395 CPVCMNELVDPSSTICGHIFCQKCIQASIQAQ-SKCPTCRRTLTVNCFHRVYL 240 C VC D + T+CGH+FC C Q + A+ +CPTC + + N ++L Sbjct: 639 CSVCSKNWKDTAITVCGHVFCLGCTQERLAARLRRCPTCNKGFSANDLLSIHL 691
>TRIM5_HUMAN (Q9C035) Tripartite motif protein 5 (EC 6.3.2.-) (RING finger| protein 88) Length = 493 Score = 47.0 bits (110), Expect = 5e-05 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 6/53 (11%) Frame = -2 Query: 419 VRNEPKFSCPVCMNELVDPSSTICGHIFCQKCIQAS------IQAQSKCPTCR 279 V + + +CP+C+ L P S CGH FCQ C+ A+ + +S CP CR Sbjct: 7 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCR 59
>BRE1_DROME (Q9VRP9) Ubiquitin-protein ligase Bre1 (EC 6.3.2.-) (dBre1)| Length = 1044 Score = 46.6 bits (109), Expect = 6e-05 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 2/65 (3%) Frame = -2 Query: 428 VKEVRN-EPKFSCPVCMNELVDPSSTICGHIFCQKCIQASIQA-QSKCPTCRRTLTVNCF 255 ++E+R + +CP C + D + C H+FC C++ + Q KCP C N + Sbjct: 979 IEEIREYKETLTCPSCKVKRKDAVLSKCFHVFCYDCLRTRYETRQRKCPKCNCAFGANDY 1038 Query: 254 HRVYL 240 HR+YL Sbjct: 1039 HRLYL 1043
>SM3L1_ARATH (Q9FF61) Putative SWI/SNF-related matrix-associated actin-dependent| regulator of chromatin subfamily A member 3-like 1 (EC 3.6.1.-) (SMARCA3-like protein 1) Length = 881 Score = 46.6 bits (109), Expect = 6e-05 Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 1/68 (1%) Frame = -2 Query: 428 VKEVRNEPKFSCPVCMNELVDPSSTICGHIFCQKCIQASIQ-AQSKCPTCRRTLTVNCFH 252 V +++ F CP+C++ + T C HIFC+ CI ++Q ++ CP CR +LT + + Sbjct: 624 VAALQDGEDFDCPICISPPTNIIITRCAHIFCRACILQTLQRSKPLCPLCRGSLTQSDLY 683 Query: 251 RVYLPTMD 228 P D Sbjct: 684 NAPPPPPD 691
>RN113_CAEEL (O17917) Putative RING finger protein 113 homolog| Length = 384 Score = 46.2 bits (108), Expect = 8e-05 Identities = 19/40 (47%), Positives = 22/40 (55%) Frame = -2 Query: 395 CPVCMNELVDPSSTICGHIFCQKCIQASIQAQSKCPTCRR 276 C +C N VDP T C H FC C S Q SKCP C++ Sbjct: 241 CFICGNPFVDPIVTKCKHYFCTGCALKSFQKSSKCPICQQ 280
>NF7O_XENLA (Q91431) Nuclear factor 7, ovary (xNF7-O)| Length = 610 Score = 46.2 bits (108), Expect = 8e-05 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 2/48 (4%) Frame = -2 Query: 404 KFSCPVCMNELVDPSSTICGHIFCQKCIQASIQAQSK--CPTCRRTLT 267 + +CP+C+ DP CGH FC+ CI + QS CP C+ ++T Sbjct: 143 ELTCPLCVELFKDPVMVACGHNFCRSCIDKVWEGQSSFACPECKESIT 190
>RO52_MOUSE (Q62191) 52 kDa Ro protein (Sjoegren syndrome type A antigen)| (SS-A) (Ro(SS-A)) (52 kDa ribonucleoprotein autoantigen Ro/SS-A) (Tripartite motif protein 21) Length = 470 Score = 46.2 bits (108), Expect = 8e-05 Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%) Frame = -2 Query: 398 SCPVCMNELVDPSSTICGHIFCQKCI-QASIQAQSKCPTCRR 276 +C +C++ +V+P S CGH FC++CI + S CP CR+ Sbjct: 19 TCSICLDPMVEPMSIECGHCFCKECIFEVGKNGGSSCPECRQ 60
>ZN313_BOVIN (Q4U5R4) Zinc finger protein 313| Length = 230 Score = 46.2 bits (108), Expect = 8e-05 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 1/66 (1%) Frame = -2 Query: 464 PATNRLLKSRAPVKEVRNEPKFSCPVCMNELVDPSSTICGHIFCQKCIQASIQAQSK-CP 288 PA + + P E +F+CPVC+ P CGH+FC C+Q ++ + C Sbjct: 8 PARDGGAQLAGPAAEADPLGRFTCPVCLEVYEKPVQVPCGHVFCSACLQECLKPKKPVCG 67 Query: 287 TCRRTL 270 CR L Sbjct: 68 VCRSAL 73
>RAD18_ASPFU (Q4WZJ6) Postreplication repair ubiquitin-protein ligase E3 rad18| (EC 6.-.-.-) Length = 418 Score = 46.2 bits (108), Expect = 8e-05 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 1/70 (1%) Frame = -2 Query: 485 MIDTVDIPATNRLLKSRAPVKEVRN-EPKFSCPVCMNELVDPSSTICGHIFCQKCIQASI 309 M T D+P + L++ P+ V E C VC + +P T C H FC CI+ + Sbjct: 1 MEQTFDLPDSTDWLET--PLSLVSPLESSLRCQVCKDFFDNPVITSCSHTFCSLCIRRCL 58 Query: 308 QAQSKCPTCR 279 + KCP CR Sbjct: 59 STEGKCPACR 68
>SM3L2_ARATH (Q9FNI6) Putative SWI/SNF-related matrix-associated actin-dependent| regulator of chromatin subfamily A member 3-like 2 (EC 3.6.1.-) (SMARCA3-like protein 2) Length = 1029 Score = 46.2 bits (108), Expect = 8e-05 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 2/56 (3%) Frame = -2 Query: 428 VKEVRNEPKFSCPVCMNELVDPSSTICGHIFCQKCIQASIQAQSK--CPTCRRTLT 267 V+E+R + CP+C+ L D T C H C++C+ AS + + CP CR T++ Sbjct: 783 VEELRKGEQGECPICLEALEDAVLTPCAHRLCRECLLASWRNSTSGLCPVCRNTVS 838
>RAD18_KLULA (Q6CTZ8) Postreplication repair ubiquitin-protein ligase E3 RAD18| (EC 6.-.-.-) Length = 427 Score = 46.2 bits (108), Expect = 8e-05 Identities = 20/52 (38%), Positives = 28/52 (53%) Frame = -2 Query: 395 CPVCMNELVDPSSTICGHIFCQKCIQASIQAQSKCPTCRRTLTVNCFHRVYL 240 C +C + L T CGH FC CI+ +Q +SKCP C LT + + +L Sbjct: 32 CHICKDFLKASVLTPCGHSFCSICIRKYLQKESKCPLCLSDLTESMLQKEFL 83
>LNX2_MOUSE (Q91XL2) Ligand of Numb-protein X 2 (Numb-binding protein 2)| Length = 687 Score = 46.2 bits (108), Expect = 8e-05 Identities = 17/42 (40%), Positives = 25/42 (59%) Frame = -2 Query: 395 CPVCMNELVDPSSTICGHIFCQKCIQASIQAQSKCPTCRRTL 270 C +C+ L+ P T CGH FC KC++ +Q + CP R+ L Sbjct: 51 CHICLQPLLQPLDTPCGHTFCHKCLRNFLQEKDFCPLDRKRL 92
>YB1B_SCHPO (P87176) Hypothetical RING finger protein C3D6.11c in chromosome II| Length = 269 Score = 45.8 bits (107), Expect = 1e-04 Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 3/50 (6%) Frame = -2 Query: 401 FSCPVCMNELVDPSSTICGHIFCQKCIQASI---QAQSKCPTCRRTLTVN 261 + C +C++ + S T CGHIFC CI +++ A KCP CRR + N Sbjct: 204 YKCVICLDSPENLSCTPCGHIFCNFCILSALGTTAATQKCPVCRRKVHPN 253
>TRAF6_MOUSE (P70196) TNF receptor-associated factor 6| Length = 530 Score = 45.8 bits (107), Expect = 1e-04 Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 1/51 (1%) Frame = -2 Query: 410 EPKFSCPVCMNELVDPSSTICGHIFCQKCIQASIQ-AQSKCPTCRRTLTVN 261 E K+ CP+C+ L + T CGH FC+ CI SI+ A KCP L N Sbjct: 65 ESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 115
>BRCA1_MOUSE (P48754) Breast cancer type 1 susceptibility protein homolog| Length = 1812 Score = 45.8 bits (107), Expect = 1e-04 Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Frame = -2 Query: 440 SRAPVKEVRN-----EPKFSCPVCMNELVDPSSTICGHIFCQKCIQASI---QAQSKCPT 285 S ++EV+N + CP+C+ + +P ST C HIFC+ C+ + + S+CP Sbjct: 4 SAVQIQEVQNVLHAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPL 63 Query: 284 CRRTLT 267 C+ +T Sbjct: 64 CKNEIT 69
>LNX2_HUMAN (Q8N448) Ligand of Numb-protein X 2 (Numb-binding protein 2) (PDZ| domain-containing RING finger protein 1) Length = 690 Score = 45.8 bits (107), Expect = 1e-04 Identities = 17/42 (40%), Positives = 25/42 (59%) Frame = -2 Query: 395 CPVCMNELVDPSSTICGHIFCQKCIQASIQAQSKCPTCRRTL 270 C +C+ L+ P T CGH FC KC++ +Q + CP R+ L Sbjct: 50 CHICLQPLLQPLDTPCGHTFCYKCLRNFLQEKDFCPLDRKRL 91
>PEX10_YEAST (Q05568) Peroxisome assembly protein 10 (Peroxin-10) (Peroxisome| biogenesis factor 10) Length = 337 Score = 45.8 bits (107), Expect = 1e-04 Identities = 16/45 (35%), Positives = 26/45 (57%) Frame = -2 Query: 410 EPKFSCPVCMNELVDPSSTICGHIFCQKCIQASIQAQSKCPTCRR 276 E C +C+ + DPS CGH+FC C+ + + + +CP CR+ Sbjct: 281 EASRKCILCLMNMSDPSCAPCGHLFCWSCLMSWCKERPECPLCRQ 325
>TRAF6_HUMAN (Q9Y4K3) TNF receptor-associated factor 6 (Interleukin 1 signal| transducer) (RING finger protein 85) Length = 522 Score = 45.8 bits (107), Expect = 1e-04 Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 1/51 (1%) Frame = -2 Query: 410 EPKFSCPVCMNELVDPSSTICGHIFCQKCIQASIQ-AQSKCPTCRRTLTVN 261 E K+ CP+C+ L + T CGH FC+ CI SI+ A KCP L N Sbjct: 65 ESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 115
>RAD18_CANGA (Q6FPI4) Postreplication repair ubiquitin-protein ligase E3 RAD18| (EC 6.-.-.-) Length = 411 Score = 45.8 bits (107), Expect = 1e-04 Identities = 19/52 (36%), Positives = 26/52 (50%) Frame = -2 Query: 395 CPVCMNELVDPSSTICGHIFCQKCIQASIQAQSKCPTCRRTLTVNCFHRVYL 240 C +C + L +P T CGH FC CI+ + + KCP C L + YL Sbjct: 27 CHICKDFLKNPVLTPCGHTFCSLCIRGYLSNEPKCPLCLHELRESMLRSEYL 78
>BRCA1_PONPY (Q6J6J0) Breast cancer type 1 susceptibility protein homolog| Length = 1863 Score = 45.8 bits (107), Expect = 1e-04 Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Frame = -2 Query: 440 SRAPVKEVRN-----EPKFSCPVCMNELVDPSSTICGHIFCQKCIQASI---QAQSKCPT 285 S V+EV+N + CP+C+ + +P ST C HIFC+ C+ + + S+CP Sbjct: 4 SAVRVEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPL 63 Query: 284 CRRTLT 267 C+ +T Sbjct: 64 CKNDIT 69
>BRCA1_MACMU (Q6J6I9) Breast cancer type 1 susceptibility protein homolog| Length = 1863 Score = 45.8 bits (107), Expect = 1e-04 Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Frame = -2 Query: 440 SRAPVKEVRN-----EPKFSCPVCMNELVDPSSTICGHIFCQKCIQASI---QAQSKCPT 285 S V+EV+N + CP+C+ + +P ST C HIFC+ C+ + + S+CP Sbjct: 4 SAVRVEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCRFCMLKLLNQKKGPSQCPL 63 Query: 284 CRRTLT 267 C+ +T Sbjct: 64 CKNDIT 69
>TRIM6_MOUSE (Q8BGE7) Tripartite motif protein 6| Length = 488 Score = 45.4 bits (106), Expect = 1e-04 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 7/55 (12%) Frame = -2 Query: 422 EVRNEPKFSCPVCMNELVDPSSTICGHIFCQKCIQASIQ-------AQSKCPTCR 279 ++R+E +CP+C+ L +P S CGH FCQ CI + +S CP CR Sbjct: 8 DIRDE--VTCPICLELLTEPLSIDCGHSFCQVCIIGNSNNSVFGQGGRSSCPVCR 60
>BRCA1_BOVIN (Q864U1) Breast cancer type 1 susceptibility protein homolog| Length = 1849 Score = 45.4 bits (106), Expect = 1e-04 Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 8/62 (12%) Frame = -2 Query: 428 VKEVRN-----EPKFSCPVCMNELVDPSSTICGHIFCQKCIQASI---QAQSKCPTCRRT 273 V+EV+N + CP+C+ + +P ST C HIFC+ C+ + + S+CP C+ Sbjct: 8 VEEVQNVLNAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKND 67 Query: 272 LT 267 +T Sbjct: 68 IT 69
>ZN313_PANTR (Q6J212) Zinc finger protein 313| Length = 228 Score = 45.4 bits (106), Expect = 1e-04 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%) Frame = -2 Query: 431 PVKEVRNEPKFSCPVCMNELVDPSSTICGHIFCQKCIQASIQAQSK-CPTCRRTL 270 P E +F+CPVC+ P CGH+FC C+Q ++ + C CR L Sbjct: 17 PAAEADPLGRFTCPVCLEVYEKPVQVPCGHVFCSACLQECLKPKKPVCGVCRSAL 71
>ZN313_HUMAN (Q9Y508) Zinc finger protein 313 (RING finger protein 114)| Length = 228 Score = 45.4 bits (106), Expect = 1e-04 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%) Frame = -2 Query: 431 PVKEVRNEPKFSCPVCMNELVDPSSTICGHIFCQKCIQASIQAQSK-CPTCRRTL 270 P E +F+CPVC+ P CGH+FC C+Q ++ + C CR L Sbjct: 17 PAAEADPLGRFTCPVCLEVYEKPVQVPCGHVFCSACLQECLKPKKPVCGVCRSAL 71
>BRCA1_PANTR (Q9GKK8) Breast cancer type 1 susceptibility protein homolog| Length = 1863 Score = 45.4 bits (106), Expect = 1e-04 Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 8/62 (12%) Frame = -2 Query: 428 VKEVRN-----EPKFSCPVCMNELVDPSSTICGHIFCQKCIQASI---QAQSKCPTCRRT 273 V+EV+N + CP+C+ + +P ST C HIFC+ C+ + + S+CP C+ Sbjct: 8 VEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKND 67 Query: 272 LT 267 +T Sbjct: 68 IT 69
>BRCA1_HUMAN (P38398) Breast cancer type 1 susceptibility protein (RING finger| protein 53) Length = 1863 Score = 45.4 bits (106), Expect = 1e-04 Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 8/62 (12%) Frame = -2 Query: 428 VKEVRN-----EPKFSCPVCMNELVDPSSTICGHIFCQKCIQASI---QAQSKCPTCRRT 273 V+EV+N + CP+C+ + +P ST C HIFC+ C+ + + S+CP C+ Sbjct: 8 VEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKND 67 Query: 272 LT 267 +T Sbjct: 68 IT 69
>BRCA1_GORGO (Q6J6I8) Breast cancer type 1 susceptibility protein homolog| Length = 1863 Score = 45.4 bits (106), Expect = 1e-04 Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 8/62 (12%) Frame = -2 Query: 428 VKEVRN-----EPKFSCPVCMNELVDPSSTICGHIFCQKCIQASI---QAQSKCPTCRRT 273 V+EV+N + CP+C+ + +P ST C HIFC+ C+ + + S+CP C+ Sbjct: 8 VEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKND 67 Query: 272 LT 267 +T Sbjct: 68 IT 69
>BRCA1_CANFA (Q95153) Breast cancer type 1 susceptibility protein homolog| Length = 1878 Score = 45.4 bits (106), Expect = 1e-04 Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 8/62 (12%) Frame = -2 Query: 428 VKEVRN-----EPKFSCPVCMNELVDPSSTICGHIFCQKCIQASI---QAQSKCPTCRRT 273 V+EV+N + CP+C+ + +P ST C HIFC+ C+ + + S+CP C+ Sbjct: 8 VEEVQNVLNAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQRKGPSQCPLCKND 67 Query: 272 LT 267 +T Sbjct: 68 IT 69
>TRI40_PANTR (Q1XHT8) Tripartite motif 40 protein| Length = 229 Score = 45.4 bits (106), Expect = 1e-04 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 5/51 (9%) Frame = -2 Query: 413 NEPKFSCPVCMNELVDPSSTICGHIFCQKCIQASIQAQSK-----CPTCRR 276 N+ + CP+C L + ST CGH+FC+ C+ ++ S CP CR+ Sbjct: 8 NQEEGVCPICQESLKEAVSTNCGHLFCRVCLTQHVEKASASGVFCCPLCRK 58
>PZRN3_RAT (P68907) PDZ domain-containing RING finger protein 3 (Semaphorin| cytoplasmic domain-associated protein 3) (SEMACAP3 protein) Length = 1062 Score = 45.4 bits (106), Expect = 1e-04 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%) Frame = -2 Query: 410 EPKFSCPVCMNELVDPSSTICGHIFCQKCIQASIQAQSKCPT-CRRTLTVNCFHRV 246 +P C +C L DP +T CGH+FC C+ + + CP+ CR L+ + V Sbjct: 13 DPDLKCALCHKVLEDPLTTPCGHVFCAGCVLPWVVQEGSCPSRCRGRLSAKELNHV 68
>BRCA1_RAT (O54952) Breast cancer type 1 susceptibility protein homolog| Length = 1817 Score = 45.4 bits (106), Expect = 1e-04 Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Frame = -2 Query: 440 SRAPVKEVRN-----EPKFSCPVCMNELVDPSSTICGHIFCQKCIQASI---QAQSKCPT 285 S ++EV+N + CP+C+ + +P ST C HIFC+ C+ + + S+CP Sbjct: 4 SAVRIQEVQNVLHAMQKILECPICLELIKEPVSTQCDHIFCKFCMLKLLNQKKGPSQCPL 63 Query: 284 CRRTLT 267 C+ +T Sbjct: 64 CKNEIT 69
>BRE1_CAEBR (Q60YN5) Ubiquitin-protein ligase bre-1 (EC 6.3.2.-) (RING finger| protein rfp-1) Length = 828 Score = 45.4 bits (106), Expect = 1e-04 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%) Frame = -2 Query: 398 SCPVCMNELVDPSSTICGHIFCQKCIQASIQA-QSKCPTCRRTLTVNCFHRVYL 240 +CP C D C H+FC+ CI+ Q KCP C N FHR+++ Sbjct: 775 TCPSCKTRPKDCIMLKCYHLFCETCIKTMYDTRQRKCPKCNSNFGANDFHRIFI 828
>BRE1_CAEEL (P34537) Ubiquitin-protein ligase bre-1 (EC 6.3.2.-) (RING finger| protein rfp-1) Length = 837 Score = 45.4 bits (106), Expect = 1e-04 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%) Frame = -2 Query: 398 SCPVCMNELVDPSSTICGHIFCQKCIQASIQA-QSKCPTCRRTLTVNCFHRVYL 240 +CP C D C H+FC+ CI+ Q KCP C N FHR+++ Sbjct: 784 TCPSCKTRPKDCIMLKCYHLFCETCIKTMYDTRQRKCPKCNSNFGANDFHRIFI 837
>PZRN3_MOUSE (Q69ZS0) PDZ domain-containing RING finger protein 3 (Semaphorin| cytoplasmic domain-associated protein 3) (SEMACAP3 protein) Length = 1063 Score = 45.1 bits (105), Expect = 2e-04 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%) Frame = -2 Query: 410 EPKFSCPVCMNELVDPSSTICGHIFCQKCIQASIQAQSKCPT-CRRTLTVNCFHRV 246 +P C +C L DP +T CGH+FC C+ + + CP CR L+ + V Sbjct: 13 DPDLKCALCHKVLEDPLTTPCGHVFCAGCVLPWVVQEGSCPARCRGRLSAKELNHV 68
>TRI40_HUMAN (Q6P9F5) Tripartite motif 40 protein (RING finger protein 35)| Length = 258 Score = 45.1 bits (105), Expect = 2e-04 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 6/52 (11%) Frame = -2 Query: 413 NEPKFSCPVCMNELVDPSSTICGHIFCQKCIQASIQAQSK------CPTCRR 276 N+ + CP+C L + ST CGH+FC+ C+ ++ S CP CR+ Sbjct: 8 NQEEGVCPICQESLKEAVSTNCGHLFCRVCLTQHVEKASASGVFCCCPLCRK 59
>PZRN3_HUMAN (Q9UPQ7) PDZ domain-containing RING finger protein 3 (Ligand of| Numb-protein X 3) (Semaphorin cytoplasmic domain-associated protein 3) (SEMACAP3 protein) Length = 1066 Score = 45.1 bits (105), Expect = 2e-04 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%) Frame = -2 Query: 410 EPKFSCPVCMNELVDPSSTICGHIFCQKCIQASIQAQSKCPT-CRRTLTVNCFHRV 246 +P C +C L DP +T CGH+FC C+ + + CP CR L+ + V Sbjct: 13 DPDLKCALCHKVLEDPLTTPCGHVFCAGCVLPWVVQEGSCPARCRGRLSAKELNHV 68
>BFAR_HUMAN (Q9NZS9) Bifunctional apoptosis regulator (RING finger protein 47)| Length = 450 Score = 44.7 bits (104), Expect = 2e-04 Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 2/70 (2%) Frame = -2 Query: 482 IDTVDIPATNRLLKSRAPVKEVRNEPKFSCPVCMNELVDPSSTICGHIFCQKCIQA--SI 309 ++T+D+ + LKS P V +FSC C + LV+P++ CGH FC+ C+ + Sbjct: 9 VNTMDLER-DEPLKSTGPQISVS---EFSCHCCYDILVNPTTLNCGHSFCRHCLALWWAS 64 Query: 308 QAQSKCPTCR 279 +++CP CR Sbjct: 65 SKKTECPECR 74
>RFP2_HUMAN (O60858) Ret finger protein 2 (Leukemia-associated protein 5)| (B-cell chronic lymphocytic leukemia tumor suppressor Leu5) (Putative tumor suppressor RFP2) (Tripartite motif protein 13) (RING finger protein 77) Length = 407 Score = 44.7 bits (104), Expect = 2e-04 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 10/55 (18%) Frame = -2 Query: 410 EPKFSCPVCMNELVDPSSTICGHIFCQKCIQASIQ----------AQSKCPTCRR 276 E +CP+C + DP C H FC+KC++ ++ A KCPTCR+ Sbjct: 5 EEDLTCPICCSLFDDPRVLPCSHNFCKKCLEGILEGSVRNSLWRPAPFKCPTCRK 59
>BRE1_YARLI (Q6CF78) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-)| Length = 700 Score = 44.7 bits (104), Expect = 2e-04 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Frame = -2 Query: 395 CPVCMNELVDPSSTICGHIFCQKCIQASIQAQ-SKCPTCRRTLTVNCFHRVYL 240 C +C D + +CGH+FC +C Q + A+ KCP C + + N V+L Sbjct: 648 CSLCSKNWKDTALKVCGHVFCHQCAQDRLDARLRKCPNCNKPFSQNDLLTVHL 700
>RAD5_ASPFU (Q4WVM1) DNA repair protein rad5 (EC 3.6.1.-)| Length = 1245 Score = 44.7 bits (104), Expect = 2e-04 Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 7/61 (11%) Frame = -2 Query: 428 VKEVRNEPKFSCPVCMNE-LVDPSSTICGHIFCQKCIQASIQAQS------KCPTCRRTL 270 +++++ E CP+C E ++DP+ T C H C+KC++ I+ Q+ +C +CR + Sbjct: 930 LRQIQTESSGECPICSEEPMIDPAVTACWHSACKKCLEDYIRHQTDKGVPPRCFSCRAPV 989 Query: 269 T 267 T Sbjct: 990 T 990
>TRI40_RAT (Q6MFY8) Tripartite motif protein 40 (RING finger protein 35)| Length = 247 Score = 44.7 bits (104), Expect = 2e-04 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 5/45 (11%) Frame = -2 Query: 395 CPVCMNELVDPSSTICGHIFCQKCI-----QASIQAQSKCPTCRR 276 CP+C++ L + ST C H+FC+ C+ +AS+ CP CR+ Sbjct: 12 CPICLDPLKEAVSTDCRHLFCRMCLIRHMDKASVSGVLSCPVCRK 56
>ATL3I_ARATH (Q7X843) RING-H2 finger protein ATL3I (YGHL1-C3HC4 RING fusion| protein) Length = 349 Score = 44.7 bits (104), Expect = 2e-04 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 4/54 (7%) Frame = -2 Query: 410 EPKFSCPVCMNELVDPSST----ICGHIFCQKCIQASIQAQSKCPTCRRTLTVN 261 E F C VC+NE D +C H F CI + + S CP CRR+L+ + Sbjct: 202 EQPFDCAVCLNEFSDTDKLRLLPVCSHAFHLHCIDTWLLSNSTCPLCRRSLSTS 255
>ATL4O_ARATH (Q8W571) RING-H2 finger protein ATL4O precursor| Length = 322 Score = 44.3 bits (103), Expect = 3e-04 Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 4/84 (4%) Frame = -2 Query: 506 RANNNNLMIDTVDIPATNRLLKSRAPVKEVRNEPKFSCPVCMNELVDPSST----ICGHI 339 R +N ++++ + A + + +S+ K++ C +C+NEL D + IC H+ Sbjct: 92 RGGLDNAVVESFPVFAYSSVKESKIGSKDLE------CAICLNELEDHETVRLLPICNHL 145 Query: 338 FCQKCIQASIQAQSKCPTCRRTLT 267 F CI + + + CP CR LT Sbjct: 146 FHIDCIDTWLYSHATCPVCRSNLT 169
>DTX3_HUMAN (Q8N9I9) Protein deltex-3 (Deltex-3) (Deltex3)| Length = 347 Score = 44.3 bits (103), Expect = 3e-04 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Frame = -2 Query: 428 VKEVRNEPKFSCPVCMNELVDPSSTI-CGHIFCQKCIQASIQAQSKCPTCRR 276 ++E E + +CP+C+ E+ + + C H FC+ CI ++Q + CP C R Sbjct: 153 LREEAEEQESTCPICLGEIQNAKTLEKCRHSFCEGCITRALQVKKACPMCGR 204
>SMRA3_RABIT (Q95216) SWI/SNF-related matrix-associated actin-dependent| regulator of chromatin subfamily A member 3 (EC 3.6.1.-) (Sucrose nonfermenting protein 2-like 3) (RUSH-1) Length = 1005 Score = 44.3 bits (103), Expect = 3e-04 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 3/45 (6%) Frame = -2 Query: 395 CPVCMNELVDPSSTICGHIFCQKCIQASIQAQ---SKCPTCRRTL 270 C +C++ L P T C H+FC+ CI IQ + +KCP CR + Sbjct: 757 CAICLDSLTVPVITHCAHVFCKPCICQCIQNEQPHAKCPLCRNDI 801
>PEX10_ARATH (Q9SYU4) Peroxisome assembly protein 10 (Peroxin-10) (AthPEX10)| (Pex10p) (PER8) Length = 381 Score = 44.3 bits (103), Expect = 3e-04 Identities = 15/39 (38%), Positives = 23/39 (58%) Frame = -2 Query: 395 CPVCMNELVDPSSTICGHIFCQKCIQASIQAQSKCPTCR 279 C +C++ P++T CGH+FC CI + +CP CR Sbjct: 327 CTLCLSTRQHPTATPCGHVFCWSCIMEWCNEKQECPLCR 365
>TRAF3_MOUSE (Q60803) TNF receptor-associated factor 3 (CD40 receptor-associated| factor 1) (CRAF1) (TRAFAMN) Length = 567 Score = 44.3 bits (103), Expect = 3e-04 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Frame = -2 Query: 410 EPKFSCPVCMNELVDPSSTICGHIFCQKCIQASIQAQS-KCPTCRRTL 270 E K+ C C L +P T CGH FC+ C+ A + + S KC C+ ++ Sbjct: 47 EDKYKCEKCRLVLCNPKQTECGHRFCESCMAALLSSSSPKCTACQESI 94
>SM3L3_ARATH (Q9FIY7) Putative SWI/SNF-related matrix-associated actin-dependent| regulator of chromatin subfamily A member 3-like 3 (EC 3.6.1.-) (SMARCA3-like protein 3) Length = 1277 Score = 43.9 bits (102), Expect = 4e-04 Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 10/71 (14%) Frame = -2 Query: 440 SRAPVKEV----RNEPKFSCPVCMNELVDPSSTICGHIFCQKCIQASIQAQS--KCPTCR 279 SRA ++EV R+ CP+C+ DP T C H C++C+ S ++ S CP CR Sbjct: 1021 SRAYIEEVIQDLRDGNSKECPICLESADDPVLTPCAHRMCRECLLTSWRSPSCGLCPICR 1080 Query: 278 ----RTLTVNC 258 RT ++C Sbjct: 1081 TILKRTELISC 1091
>RAD5_CANGA (Q6FY76) DNA repair protein RAD5 (EC 3.6.1.-)| Length = 1151 Score = 43.9 bits (102), Expect = 4e-04 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 9/54 (16%) Frame = -2 Query: 395 CPVCMNELVDPSSTI---CGHIFCQKCI------QASIQAQSKCPTCRRTLTVN 261 C +C E ++ SS + C H+FC++C+ Q Q KCP CRR + +N Sbjct: 897 CSICTAEPIESSSAVVTECEHVFCKECLEEYGNFQKEKSLQQKCPNCRRDINLN 950
>RAG1_HUMAN (P15918) V(D)J recombination-activating protein 1 (RAG-1) (RING| finger protein 74) Length = 1043 Score = 43.9 bits (102), Expect = 4e-04 Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%) Frame = -2 Query: 398 SCPVCMNELVDPSSTICGHIFCQKCIQASIQAQ-SKCPTCR 279 SC +C + L DP T C H+FC+ CI ++ S CP+CR Sbjct: 292 SCQICEHILADPVETNCKHVFCRVCILRCLKVMGSYCPSCR 332
>DTX3_MOUSE (Q80V91) Protein deltex-3 (Deltex-3) (Deltex3) (mDTX3)| Length = 347 Score = 43.9 bits (102), Expect = 4e-04 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Frame = -2 Query: 428 VKEVRNEPKFSCPVCMNELVDPSSTI-CGHIFCQKCIQASIQAQSKCPTCRR 276 ++E E + +CP+C+ E+ + + C H FC+ CI ++Q + CP C R Sbjct: 153 LREDAEEQETTCPICLGEIQNAKTLEKCRHSFCEGCITRALQVKKACPMCGR 204
>TRI26_PIG (O77666) Tripartite motif protein 26 (Zinc finger protein 173)| Length = 545 Score = 43.9 bits (102), Expect = 4e-04 Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 3/63 (4%) Frame = -2 Query: 446 LKSRAPVKEVRNEPKFSCPVCMNELVDPSSTICGHIFCQKC---IQASIQAQSKCPTCRR 276 + + AP++ + E +C +C++ L DP + CGH+FC+ C I + CP C++ Sbjct: 1 MATSAPLRSLEEE--VTCSICLDYLRDPVTIDCGHVFCRSCTTDIHPVSGGRPVCPLCKK 58 Query: 275 TLT 267 T Sbjct: 59 PFT 61
>SMRA3_HUMAN (Q14527) SWI/SNF-related matrix-associated actin-dependent| regulator of chromatin subfamily A member 3 (EC 3.6.1.-) (Sucrose nonfermenting protein 2-like 3) (DNA binding protein/plasminogen activator inhibitor 1 regulator) (Helicase-like tran Length = 1009 Score = 43.9 bits (102), Expect = 4e-04 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 3/45 (6%) Frame = -2 Query: 395 CPVCMNELVDPSSTICGHIFCQKCIQASIQAQ---SKCPTCRRTL 270 C +C++ L P T C H+FC+ CI IQ + +KCP CR + Sbjct: 760 CAICLDSLTVPVITHCAHVFCKPCICQVIQNEQPHAKCPLCRNDI 804
>SYWM_CAEEL (P46579) Probable tryptophanyl-tRNA synthetase, mitochondrial (EC| 6.1.1.2) (Tryptophan--tRNA ligase) (TrpRS) Length = 650 Score = 43.9 bits (102), Expect = 4e-04 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 8/51 (15%) Frame = -2 Query: 407 PKFSCPVCMNELVDPSSTICGHIFCQKCIQ--------ASIQAQSKCPTCR 279 P F C +C+ E +PS+ CGH+FC CIQ ++ + ++CP CR Sbjct: 251 PTFQCSICL-ENKNPSALFCGHLFCWTCIQEHAVAATSSASTSSARCPQCR 300
>RAG1_MOUSE (P15919) V(D)J recombination-activating protein 1 (RAG-1)| Length = 1040 Score = 43.9 bits (102), Expect = 4e-04 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 1/64 (1%) Frame = -2 Query: 467 IPATNRLLKSRAPVKEVRNEPKFSCPVCMNELVDPSSTICGHIFCQKCIQASIQAQ-SKC 291 I + +LL P V++ SC +C + L DP T C H+FC+ CI ++ S C Sbjct: 269 IHLSTKLLAVDFPAHFVKS---ISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYC 325 Query: 290 PTCR 279 P+CR Sbjct: 326 PSCR 329
>SMRA3_MOUSE (Q6PCN7) SWI/SNF-related matrix-associated actin-dependent| regulator of chromatin subfamily A member 3 (EC 3.6.1.-) (Sucrose nonfermenting protein 2-like 3) (TNF-response element-binding protein) (P113) Length = 1003 Score = 43.5 bits (101), Expect = 5e-04 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 3/45 (6%) Frame = -2 Query: 395 CPVCMNELVDPSSTICGHIFCQKCIQASI---QAQSKCPTCRRTL 270 C +C++ L P T C H+FC+ CI I Q +KCP CR + Sbjct: 754 CAICLDSLTFPVITHCAHVFCKPCICQVIHSEQPHAKCPLCRNEI 798
>TRAF3_HUMAN (Q13114) TNF receptor-associated factor 3 (CD40 receptor-associated| factor 1) (CRAF1) (CD40-binding protein) (CD40BP) (LMP1-associated protein) (LAP1) (CAP-1) Length = 568 Score = 43.5 bits (101), Expect = 5e-04 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Frame = -2 Query: 410 EPKFSCPVCMNELVDPSSTICGHIFCQKCIQASIQAQS-KCPTCRRTL 270 E K+ C C L P T CGH FC+ C+ A + + S KC C+ ++ Sbjct: 48 EDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESI 95
>TRI48_HUMAN (Q8IWZ4) Tripartite motif protein 48 (RING finger protein 101)| Length = 375 Score = 43.5 bits (101), Expect = 5e-04 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 3/48 (6%) Frame = -2 Query: 404 KFSCPVCMNELVDPSSTICGHIFCQKCIQAS---IQAQSKCPTCRRTL 270 + +CP+CMN +DP + CGH FC+ C + I ++C C +T+ Sbjct: 12 ELTCPICMNYFIDPVTIDCGHSFCRPCFYLNWQDIPILTQCFECIKTI 59
>RFP2_MOUSE (Q9CYB0) Ret finger protein 2 (Putative tumor suppressor RFP2)| (Tripartite motif-containing protein 13) Length = 407 Score = 43.5 bits (101), Expect = 5e-04 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 10/55 (18%) Frame = -2 Query: 410 EPKFSCPVCMNELVDPSSTICGHIFCQKCIQASIQ----------AQSKCPTCRR 276 E +CP+C + DP C H FC+KC++ ++ + KCPTCR+ Sbjct: 5 EEDLTCPICCSLFDDPRVLPCSHNFCKKCLEGLLEGNVRNSLWRPSPFKCPTCRK 59
>BFAR_RAT (Q5PQN2) Bifunctional apoptosis regulator| Length = 450 Score = 43.1 bits (100), Expect = 7e-04 Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 2/44 (4%) Frame = -2 Query: 404 KFSCPVCMNELVDPSSTICGHIFCQKCIQASIQAQSK--CPTCR 279 +FSC C + LV+P++ CGH FC+ C+ + K CP CR Sbjct: 31 EFSCHCCYDTLVNPTTLNCGHSFCRHCLALWWMSSKKTECPECR 74
>BFAR_MOUSE (Q8R079) Bifunctional apoptosis regulator| Length = 450 Score = 43.1 bits (100), Expect = 7e-04 Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 2/44 (4%) Frame = -2 Query: 404 KFSCPVCMNELVDPSSTICGHIFCQKCIQASIQAQSK--CPTCR 279 +FSC C + LV+P++ CGH FC+ C+ + K CP CR Sbjct: 31 EFSCHCCYDTLVNPTTLNCGHSFCRHCLALWWMSSKKTECPECR 74
>ATL1C_ARATH (Q9SK92) RING-H2 finger protein ATL1C precursor (RING-H2 finger| protein ATL15) Length = 381 Score = 43.1 bits (100), Expect = 7e-04 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 5/58 (8%) Frame = -2 Query: 428 VKEVR-NEPKFSCPVCMNELVDPSSTI----CGHIFCQKCIQASIQAQSKCPTCRRTL 270 VK +R + CPVC+NE D + C H+F CI A +++Q+ CP CR L Sbjct: 106 VKTLRIGKEALECPVCLNEFEDDETLRLIPQCCHVFHPGCIDAWLRSQTTCPLCRANL 163
>TRIM6_HUMAN (Q9C030) Tripartite motif protein 6 (RING finger protein 89)| Length = 488 Score = 43.1 bits (100), Expect = 7e-04 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 7/55 (12%) Frame = -2 Query: 422 EVRNEPKFSCPVCMNELVDPSSTICGHIFCQKCIQAS-------IQAQSKCPTCR 279 ++R E +CP+C+ L +P S CGH FCQ CI + + + CP C+ Sbjct: 8 DIREE--VTCPICLELLTEPLSIDCGHSFCQACITPNGRESVIGQEGERSCPVCQ 60
>A33_PLEWA (Q02084) Zinc-binding protein A33| Length = 624 Score = 42.7 bits (99), Expect = 9e-04 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%) Frame = -2 Query: 398 SCPVCMNELVDPSSTICGHIFCQKCIQASIQAQS--KCPTCRRTLT 267 +CP+C + +P CGH FC+ CI S ++ S CP C+ LT Sbjct: 161 TCPLCRSLFKEPVILECGHNFCKHCIDKSWESASAFSCPECKEVLT 206
>BRE1_GIBZE (Q4I7N9) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-)| Length = 703 Score = 42.7 bits (99), Expect = 9e-04 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Frame = -2 Query: 395 CPVCMNELVDPSSTICGHIFCQKCIQASI-QAQSKCPTCRR 276 C +C N + + CGH+FC +C+ I KCPTC R Sbjct: 651 CTICRNNFKNTALKTCGHLFCNQCVDDRISNRMRKCPTCSR 691
>RAG1_CHICK (P24271) V(D)J recombination-activating protein 1 (RAG-1)| Length = 1041 Score = 42.7 bits (99), Expect = 9e-04 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%) Frame = -2 Query: 398 SCPVCMNELVDPSSTICGHIFCQKCIQASIQAQS-KCPTC 282 SC +C + L DP T C H+FC+ CI + I+ CP+C Sbjct: 288 SCQICEHILADPVETTCRHLFCRTCILSCIRVMGCYCPSC 327
>RAG1_RABIT (P34088) V(D)J recombination-activating protein 1 (RAG-1)| Length = 1042 Score = 42.7 bits (99), Expect = 9e-04 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 1/64 (1%) Frame = -2 Query: 467 IPATNRLLKSRAPVKEVRNEPKFSCPVCMNELVDPSSTICGHIFCQKCIQASIQAQ-SKC 291 I + +LL P V++ SC +C + L DP T C H+FC+ CI ++ S C Sbjct: 271 IHLSTKLLAVDFPAHFVKS---ISCQICEHILADPVETSCKHVFCRICILRCLKVMGSYC 327 Query: 290 PTCR 279 P+C+ Sbjct: 328 PSCQ 331
>RAG1_PIG (Q867B5) V(D)J recombination-activating protein 1 (RAG-1)| Length = 1043 Score = 42.7 bits (99), Expect = 9e-04 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%) Frame = -2 Query: 398 SCPVCMNELVDPSSTICGHIFCQKCIQASIQAQ-SKCPTC 282 SC +C + L DP T C H+FC+ CI ++ S CP+C Sbjct: 292 SCQICEHILADPVETSCKHVFCRICILRCLKVMGSSCPSC 331
>TRI26_PANTR (Q7YR34) Tripartite motif protein 26 (Zinc finger protein 173)| Length = 539 Score = 42.7 bits (99), Expect = 9e-04 Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 3/60 (5%) Frame = -2 Query: 446 LKSRAPVKEVRNEPKFSCPVCMNELVDPSSTICGHIFCQKC---IQASIQAQSKCPTCRR 276 + + AP++ + E +C +C++ L DP + CGH+FC+ C ++ ++ CP C++ Sbjct: 1 MATSAPLRSLEEE--VTCSICLDYLRDPVTIDCGHVFCRSCTTDVRPISGSRPVCPLCKK 58
>TRI26_HUMAN (Q12899) Tripartite motif protein 26 (Zinc finger protein 173)| (Acid finger protein) (AFP) (RING finger protein 95) Length = 539 Score = 42.7 bits (99), Expect = 9e-04 Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 3/60 (5%) Frame = -2 Query: 446 LKSRAPVKEVRNEPKFSCPVCMNELVDPSSTICGHIFCQKC---IQASIQAQSKCPTCRR 276 + + AP++ + E +C +C++ L DP + CGH+FC+ C ++ ++ CP C++ Sbjct: 1 MATSAPLRSLEEE--VTCSICLDYLRDPVTIDCGHVFCRSCTTDVRPISGSRPVCPLCKK 58
>TRI56_MOUSE (Q80VI1) Tripartite motif protein 56| Length = 734 Score = 42.7 bits (99), Expect = 9e-04 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%) Frame = -2 Query: 398 SCPVCMNELVDPSSTICGHIFCQKCI-QASIQAQSKCPTCRRTLTV 264 +C +C+ +L P + C H +CQ C+ Q I Q +CP CR + V Sbjct: 20 ACKICLEQLHTPKTLPCLHTYCQDCLAQLDIGGQVRCPECREIVPV 65
>TRI25_MOUSE (Q61510) Tripartite motif protein 25 (Zinc finger protein 147)| (Estrogen-responsive finger protein) (Efp) Length = 634 Score = 42.7 bits (99), Expect = 9e-04 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 3/50 (6%) Frame = -2 Query: 404 KFSCPVCMNELVDPSSTICGHIFCQKCIQASIQAQS---KCPTCRRTLTV 264 + SC VC+ +P +T CGH FC C+ + Q +CP CR+ V Sbjct: 10 ELSCSVCLELFKEPVTTPCGHNFCTSCLDETWVVQGPPYRCPQCRKVYQV 59
>TRI50_RAT (Q810I1) Tripartite motif protein 50| Length = 483 Score = 42.7 bits (99), Expect = 9e-04 Identities = 13/50 (26%), Positives = 29/50 (58%), Gaps = 3/50 (6%) Frame = -2 Query: 410 EPKFSCPVCMNELVDPSSTICGHIFCQKCIQA---SIQAQSKCPTCRRTL 270 + + CP+C+ +P CGH +C+ C+ + + ++ +CP CR+++ Sbjct: 11 QDQLQCPICLEVFKEPLMLQCGHSYCKNCLDSLSEHLDSELRCPVCRQSV 60
>TRIM3_HUMAN (O75382) Tripartite motif protein 3 (RING finger protein 22)| (Brain-expressed RING finger protein) (RING finger protein 97) Length = 744 Score = 42.7 bits (99), Expect = 9e-04 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 3/44 (6%) Frame = -2 Query: 395 CPVCMNELVDPSSTICGHIFCQKCIQASIQAQS---KCPTCRRT 273 C +C++ P C H FC++C+Q I AQS CP CR+T Sbjct: 22 CSICLDRYQCPKVLPCLHTFCERCLQNYIPAQSLTLSCPVCRQT 65
>TRI11_HUMAN (Q96F44) Tripartite motif protein 11 (EC 6.3.2.-) (RING finger| protein 92) (BIA1 protein) Length = 468 Score = 42.4 bits (98), Expect = 0.001 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 3/55 (5%) Frame = -2 Query: 434 APVKEVRNEPKFSCPVCMNELVDPSSTICGHIFCQKCIQ---ASIQAQSKCPTCR 279 AP + + +C +C++ DP T CGH FC++CI+ + CP CR Sbjct: 3 APDLSTNLQEEATCAICLDYFTDPVMTDCGHNFCRECIRRCWGQPEGPYACPECR 57
>TRIM2_MOUSE (Q9ESN6) Tripartite motif protein 2 (Neural activity-related RING| finger protein) Length = 744 Score = 42.4 bits (98), Expect = 0.001 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%) Frame = -2 Query: 434 APVKEVRNEPKFSCPVCMNELVDPSSTICGHIFCQKCIQASIQAQS---KCPTCRRT 273 +PV ++ C +C+ +P C H FC++C+Q I A S CP CR+T Sbjct: 10 SPVVRQIDKQFLICSICLERYKNPKVLPCLHTFCERCLQNYIPAHSLTLSCPVCRQT 66
>TRIM2_HUMAN (Q9C040) Tripartite motif protein 2 (RING finger protein 86)| Length = 744 Score = 42.4 bits (98), Expect = 0.001 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%) Frame = -2 Query: 434 APVKEVRNEPKFSCPVCMNELVDPSSTICGHIFCQKCIQASIQAQS---KCPTCRRT 273 +PV ++ C +C+ +P C H FC++C+Q I A S CP CR+T Sbjct: 10 SPVVRQIDKQFLICSICLERYKNPKVLPCLHTFCERCLQNYIPAHSLTLSCPVCRQT 66
>TRI11_MOUSE (Q99PQ2) Tripartite motif protein 11 (EC 6.3.2.-)| Length = 467 Score = 42.4 bits (98), Expect = 0.001 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 3/55 (5%) Frame = -2 Query: 434 APVKEVRNEPKFSCPVCMNELVDPSSTICGHIFCQKCIQ---ASIQAQSKCPTCR 279 AP + + +C +C++ DP T CGH FC++CI+ + CP CR Sbjct: 3 APDLSTNLQEEATCAICLDYFTDPVMTDCGHNFCRECIRRCWGQPEGPYACPECR 57
>UHRF2_MOUSE (Q7TMI3) Ubiquitin-like PHD and RING finger domain-containing| protein 2 (EC 6.3.2.-) (Ubiquitin-like-containing PHD and RING finger domains protein 2) (Np95-like ring finger protein) (Nuclear zinc finger protein Np97) (NIRF) Length = 803 Score = 42.4 bits (98), Expect = 0.001 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 1/51 (1%) Frame = -2 Query: 410 EPKFSCPVCMNELVDPSSTICGHIFCQKCIQASIQAQ-SKCPTCRRTLTVN 261 E F C C + P +T C H C+ C+Q S +AQ CP CR L N Sbjct: 729 EQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 779
>UHRF2_HUMAN (Q96PU4) Ubiquitin-like PHD and RING finger domain-containing| protein 2 (EC 6.3.2.-) (Ubiquitin-like-containing PHD and RING finger domains protein 2) (Np95/ICBP90-like RING finger protein) (Np95-like RING finger protein) (Nuclear zinc finger Length = 802 Score = 42.4 bits (98), Expect = 0.001 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 1/51 (1%) Frame = -2 Query: 410 EPKFSCPVCMNELVDPSSTICGHIFCQKCIQASIQAQ-SKCPTCRRTLTVN 261 E F C C + P +T C H C+ C+Q S +AQ CP CR L N Sbjct: 728 EQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 778
>YQDA_CAEEL (Q09268) Hypothetical RING finger protein C32D5.10 in chromosome II| Length = 610 Score = 42.4 bits (98), Expect = 0.001 Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 3/82 (3%) Frame = -2 Query: 515 DHPRANNNNLMIDTVDIPATNRLLKSRAPVKEVRNEPKFSCPVCMNELVDPSS-TICGHI 339 D P + + L +T+ + + +S +E+ +EP+ C VC NE++D +S + C H Sbjct: 2 DSPSTSESPLKKNTIQDFGESNMTESPQSKEEI-DEPEEECSVCKNEIIDTTSLSDCCHE 60 Query: 338 FCQKCIQASIQAQSK--CPTCR 279 FC CI + S CP C+ Sbjct: 61 FCYDCIVGWLTKGSGPFCPMCK 82
>TRI50_PIG (Q865W2) Tripartite motif protein 50| Length = 486 Score = 42.4 bits (98), Expect = 0.001 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 3/48 (6%) Frame = -2 Query: 410 EPKFSCPVCMNELVDPSSTICGHIFCQKC---IQASIQAQSKCPTCRR 276 E + CPVC+ +P CGH +C+ C + + ++ +CP CR+ Sbjct: 11 EDRLQCPVCLEVFKEPLMLQCGHSYCKGCLLSLSRHLDSELRCPVCRQ 58
>AMFR2_HUMAN (Q9UKV5) Autocrine motility factor receptor, isoform 2 (EC 6.3.2.-)| (AMF receptor) (gp78) Length = 643 Score = 42.4 bits (98), Expect = 0.001 Identities = 15/50 (30%), Positives = 28/50 (56%) Frame = -2 Query: 395 CPVCMNELVDPSSTICGHIFCQKCIQASIQAQSKCPTCRRTLTVNCFHRV 246 C +C + + CGH+F C+++ ++ + CPTCR +L + +RV Sbjct: 341 CAICWDSMQAARKLPCGHLFHNSCLRSWLEQDTSCPTCRMSLNIADNNRV 390
>CWC24_KLULA (Q6CSS6) Pre-mRNA-splicing factor CWC24| Length = 229 Score = 42.4 bits (98), Expect = 0.001 Identities = 17/49 (34%), Positives = 23/49 (46%) Frame = -2 Query: 428 VKEVRNEPKFSCPVCMNELVDPSSTICGHIFCQKCIQASIQAQSKCPTC 282 +KE+ P F C +C E P T C H FC C ++ + CP C Sbjct: 161 LKELEEIP-FRCFLCKKEYTSPVVTKCNHYFCSSCFMKQMKVSTNCPIC 208
>TRI17_RAT (Q9WV59) Tripartite motif protein 17 (Testis RING finger protein)| Length = 477 Score = 42.4 bits (98), Expect = 0.001 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 12/58 (20%) Frame = -2 Query: 416 RNEPKFSCPVCMNELVDPSSTICGHIFCQKCIQASIQ------------AQSKCPTCR 279 R + + +C +C++ DP T CGH FC++CIQ S + CP CR Sbjct: 9 RLQEEATCSICLDYFTDPVMTACGHNFCRECIQMSWEKGKGKKGKKKQKGSFPCPECR 66
>TRI17_MOUSE (Q7TPM3) Tripartite motif protein 17| Length = 477 Score = 42.4 bits (98), Expect = 0.001 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 12/58 (20%) Frame = -2 Query: 416 RNEPKFSCPVCMNELVDPSSTICGHIFCQKCIQASIQ------------AQSKCPTCR 279 R + + +C +C++ DP T CGH FC++CIQ S + CP CR Sbjct: 9 RLQEEATCSICLDYFTDPVMTACGHNFCRECIQMSWEKGKVKKGKKKQKGSFPCPECR 66
>BRE1_YEAST (Q07457) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-) (Brefeldin| A-sensitivity protein 1) Length = 700 Score = 42.4 bits (98), Expect = 0.001 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 2/74 (2%) Frame = -2 Query: 455 NRLLKSRAPVKEVRN-EPKFSCPVCMNELVDPSSTICGHIFCQKCIQASIQAQ-SKCPTC 282 N+ A V+E+ N C +C + + CGH+FC+ C + + A+ KCPTC Sbjct: 627 NKGSSDEALVEELANFRTLVYCSLCSKNWKNMAIKTCGHVFCENCCKERLAARMRKCPTC 686 Query: 281 RRTLTVNCFHRVYL 240 + + N V+L Sbjct: 687 NKAFSSNDLLTVHL 700
>ATL2A_ARATH (O22755) RING-H2 finger protein ATL2A (RING-H2 zinc finger protein| RHA3a) Length = 185 Score = 42.0 bits (97), Expect = 0.001 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 5/51 (9%) Frame = -2 Query: 395 CPVCMNELVDPSST----ICGHIFCQKCIQASIQAQSKCPTCRRTLT-VNC 258 C +C+ + D +CGH F +CI + ++S CP+CRR LT V C Sbjct: 102 CAICLTDFADGEEIRVLPLCGHSFHVECIDKWLVSRSSCPSCRRILTPVRC 152
>TRI39_HUMAN (Q9HCM9) Tripartite motif protein 39 (RING finger protein 23)| (Testis-abundant finger protein) Length = 518 Score = 42.0 bits (97), Expect = 0.001 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 3/45 (6%) Frame = -2 Query: 398 SCPVCMNELVDPSSTICGHIFCQKCIQ---ASIQAQSKCPTCRRT 273 SC VC+ L +P CGH FC+ CI ++ CP CR+T Sbjct: 28 SCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVCRKT 72
>TRI50_HUMAN (Q86XT4) Tripartite motif protein 50| Length = 487 Score = 42.0 bits (97), Expect = 0.001 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%) Frame = -2 Query: 410 EPKFSCPVCMNELVDPSSTICGHIFCQKC---IQASIQAQSKCPTCRRTL 270 E CP+C+ +P CGH +C+ C + + A+ +CP CR+ + Sbjct: 11 EDWLQCPICLEVFKEPLMLQCGHSYCKGCLVSLSCHLDAELRCPVCRQAV 60
>RAD5_EMENI (Q5BHD6) DNA repair protein rad5 (EC 3.6.1.-)| Length = 1202 Score = 42.0 bits (97), Expect = 0.001 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 7/60 (11%) Frame = -2 Query: 428 VKEVRNEPKFSCPVCMNE-LVDPSSTICGHIFCQKCIQASIQ------AQSKCPTCRRTL 270 +++++ E CP+C E ++DP+ T C H C+ C++ IQ Q +C +CR L Sbjct: 881 LRQIQTESAGECPICSEEPMIDPAVTACWHSACKGCLKDYIQHQRDKGVQPRCFSCRADL 940
>CWC24_YARLI (Q6CB23) Pre-mRNA-splicing factor CWC24| Length = 256 Score = 42.0 bits (97), Expect = 0.001 Identities = 16/47 (34%), Positives = 22/47 (46%) Frame = -2 Query: 398 SCPVCMNELVDPSSTICGHIFCQKCIQASIQAQSKCPTCRRTLTVNC 258 +CP+C E P T C H FC+KC A + + C C + C Sbjct: 205 TCPICQGEFKSPVVTQCCHYFCEKCFLAKHKKKQNCFVCGKNTNGVC 251
>TRI39_RAT (Q6MFZ5) Tripartite motif protein 39 (RING finger protein 23)| Length = 488 Score = 42.0 bits (97), Expect = 0.001 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 3/45 (6%) Frame = -2 Query: 398 SCPVCMNELVDPSSTICGHIFCQKCIQ---ASIQAQSKCPTCRRT 273 SC VC+ L +P CGH FC+ CI ++ CP CR+T Sbjct: 28 SCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVCRKT 72
>TRI39_MOUSE (Q9ESN2) Tripartite motif protein 39 (RING finger protein 23)| (Testis-abundant finger protein) Length = 488 Score = 42.0 bits (97), Expect = 0.001 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 3/45 (6%) Frame = -2 Query: 398 SCPVCMNELVDPSSTICGHIFCQKCIQ---ASIQAQSKCPTCRRT 273 SC VC+ L +P CGH FC+ CI ++ CP CR+T Sbjct: 28 SCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVCRKT 72
>TRI34_HUMAN (Q9BYJ4) Tripartite motif protein 34 (Interferon-responsive finger| protein 1) (RING finger protein 21) Length = 488 Score = 42.0 bits (97), Expect = 0.001 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 7/50 (14%) Frame = -2 Query: 410 EPKFSCPVCMNELVDPSSTICGHIFCQKCIQ-------ASIQAQSKCPTC 282 + + +CP+C+ L +P S CGH C+ CI S+ +S CP C Sbjct: 10 QEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVC 59
>TRI30_MOUSE (P15533) Tripartite motif protein 30 (Down regulatory protein of| interleukin 2 receptor) Length = 496 Score = 41.6 bits (96), Expect = 0.002 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 6/46 (13%) Frame = -2 Query: 398 SCPVCMNELVDPSSTICGHIFCQKCIQASIQA------QSKCPTCR 279 +CP+C+ L +P S C H FC+ CI + ++ + CP CR Sbjct: 14 TCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCR 59
>RAD18_YEAST (P10862) Postreplication repair ubiquitin-protein ligase E3 RAD18| (EC 6.-.-.-) (Radiation sensitivity protein 18) Length = 487 Score = 41.6 bits (96), Expect = 0.002 Identities = 16/38 (42%), Positives = 20/38 (52%) Frame = -2 Query: 395 CPVCMNELVDPSSTICGHIFCQKCIQASIQAQSKCPTC 282 C +C + L P T CGH FC CI+ + Q CP C Sbjct: 28 CHICKDFLKVPVLTPCGHTFCSLCIRTHLNNQPNCPLC 65
>AMFR_MOUSE (Q9R049) Autocrine motility factor receptor (EC 6.3.2.19) (AMF| receptor) Length = 643 Score = 41.6 bits (96), Expect = 0.002 Identities = 13/44 (29%), Positives = 25/44 (56%) Frame = -2 Query: 395 CPVCMNELVDPSSTICGHIFCQKCIQASIQAQSKCPTCRRTLTV 264 C +C + + CGH+F C+++ ++ + CPTCR +L + Sbjct: 341 CAICWDSMQAARKLPCGHLFHNSCLRSWLEQDTSCPTCRMSLNI 384
>TRI26_RAT (P62603) Tripartite motif protein 26 (Zinc finger protein 173)| Length = 542 Score = 41.6 bits (96), Expect = 0.002 Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 3/56 (5%) Frame = -2 Query: 434 APVKEVRNEPKFSCPVCMNELVDPSSTICGHIFCQKC---IQASIQAQSKCPTCRR 276 AP++ + E +C +C++ L DP + CGH+FC+ C I+ + CP C++ Sbjct: 5 APLRSLEEE--VTCSICLDYLRDPVTIDCGHVFCRSCTSDIRPISGNRPVCPLCKK 58
>TRI26_MOUSE (Q99PN3) Tripartite motif protein 26 (Zinc finger protein 173)| Length = 545 Score = 41.6 bits (96), Expect = 0.002 Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 3/56 (5%) Frame = -2 Query: 434 APVKEVRNEPKFSCPVCMNELVDPSSTICGHIFCQKC---IQASIQAQSKCPTCRR 276 AP++ + E +C +C++ L DP + CGH+FC+ C I+ + CP C++ Sbjct: 5 APLRSLEEE--VTCSICLDYLRDPVTIDCGHVFCRSCTSDIRPISGNRPVCPLCKK 58
>TRI31_HUMAN (Q9BZY9) Tripartite motif protein 31| Length = 425 Score = 41.6 bits (96), Expect = 0.002 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 3/48 (6%) Frame = -2 Query: 395 CPVCMNELVDPSSTICGHIFCQKCIQASIQAQS---KCPTCRRTLTVN 261 CP+C++ L P + CGH FC KCI + KCP C+ ++ N Sbjct: 16 CPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 63
>TRI17_HUMAN (Q9Y577) Tripartite motif protein 17 (Testis RING finger protein)| (RING finger protein 16) Length = 477 Score = 41.6 bits (96), Expect = 0.002 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 12/52 (23%) Frame = -2 Query: 398 SCPVCMNELVDPSSTICGHIFCQKCIQASIQ-AQSK-----------CPTCR 279 +C +C++ DP T CGH FC+ CIQ S + A+ K CP CR Sbjct: 15 TCSICLDYFTDPVMTTCGHNFCRACIQLSWEKARGKKGRRKRKGSFPCPECR 66
>RNF5_CAEEL (Q09463) RING finger protein 5| Length = 235 Score = 41.6 bits (96), Expect = 0.002 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 3/66 (4%) Frame = -2 Query: 404 KFSCPVCMNELVDPSSTICGHIFCQKCIQASIQAQSK---CPTCRRTLTVNCFHRVYLPT 234 +F C +C++ D ++CGH+FC C+ + + CP C+ + N +Y Sbjct: 23 RFECNICLDAAKDAVVSLCGHLFCWPCLSQWLDTRPNNQVCPVCKSAIDGNKVVPIYGRG 82 Query: 233 MD*PDP 216 D DP Sbjct: 83 GDSSDP 88
>ATL3E_ARATH (Q9LUL6) Putative RING-H2 finger protein ATL3E| Length = 204 Score = 41.6 bits (96), Expect = 0.002 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 7/88 (7%) Frame = -2 Query: 518 HDHPRANNNNLMIDTVDIPATNRLLKSRAPVKEVRNEP---KFSCPVCMNELVDPSST-- 354 HDH N+ ++ I + + P+ + + C VC++EL D Sbjct: 44 HDHDNNNDGHVSITIKERVGIKPYVLRSIPIVDFNTKDFKYVLECVVCLSELADGDKARV 103 Query: 353 --ICGHIFCQKCIQASIQAQSKCPTCRR 276 C H F +CI + +Q+ S CP CR+ Sbjct: 104 LPSCDHWFHVECIDSWLQSNSTCPICRK 131
>RN141_CHICK (Q5ZM74) RING finger protein 141| Length = 230 Score = 41.2 bits (95), Expect = 0.003 Identities = 19/43 (44%), Positives = 22/43 (51%) Frame = -2 Query: 395 CPVCMNELVDPSSTICGHIFCQKCIQASIQAQSKCPTCRRTLT 267 C +CM+ VD C H FCQKCI CP CRR +T Sbjct: 155 CCICMDGRVDLILP-CAHSFCQKCIDKWSDRHRSCPVCRRQVT 196
>LNX1_HUMAN (Q8TBB1) Ubiquitin ligase LNX (EC 6.3.2.-) (Numb-binding protein 1)| (Ligand of Numb-protein X 1) Length = 728 Score = 41.2 bits (95), Expect = 0.003 Identities = 15/44 (34%), Positives = 24/44 (54%) Frame = -2 Query: 395 CPVCMNELVDPSSTICGHIFCQKCIQASIQAQSKCPTCRRTLTV 264 C +C+ L+DP T CGH +C C+ + + CP R+ L + Sbjct: 41 CHICLQALLDPLDTPCGHTYCTLCLTNFLVEKDFCPMDRKPLVL 84
>TRI49_HUMAN (Q9NS80) Tripartite motif protein 49 (RING finger protein 18)| (Testis-specific ring-finger protein) Length = 452 Score = 41.2 bits (95), Expect = 0.003 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 4/59 (6%) Frame = -2 Query: 395 CPVCMNELVDPSSTICGHIFCQKCIQAS---IQAQSKCPTC-RRTLTVNCFHRVYLPTM 231 CP+CMN +DP + CGH FC+ C + I +C C + T +N ++L M Sbjct: 15 CPLCMNYFIDPVTIDCGHSFCRPCFYLNWQDIPFLVQCSECTKSTEQINLKTNIHLKKM 73
>CWC24_CRYNE (Q5KB05) Pre-mRNA-splicing factor CWC24| Length = 329 Score = 41.2 bits (95), Expect = 0.003 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 5/54 (9%) Frame = -2 Query: 428 VKEVRNEPK-----FSCPVCMNELVDPSSTICGHIFCQKCIQASIQAQSKCPTC 282 V+EV E + F+C +C P T CGH FC C Q KC C Sbjct: 221 VREVEEEDEEEEVPFACLICRQPFTQPVVTKCGHYFCMGCAAKRFQKSPKCYAC 274
>CM007_PONPY (Q5RD97) Protein C13orf7 homolog| Length = 726 Score = 41.2 bits (95), Expect = 0.003 Identities = 15/44 (34%), Positives = 25/44 (56%) Frame = -2 Query: 398 SCPVCMNELVDPSSTICGHIFCQKCIQASIQAQSKCPTCRRTLT 267 +C +C+ ++ P I H+FC CI ++ S+CP CR +T Sbjct: 17 TCHICLGKVRQPVICINNHVFCSICIDLWLKNNSQCPACRVPIT 60
>CM007_HUMAN (Q5W0B1) Protein C13orf7| Length = 726 Score = 41.2 bits (95), Expect = 0.003 Identities = 15/44 (34%), Positives = 25/44 (56%) Frame = -2 Query: 398 SCPVCMNELVDPSSTICGHIFCQKCIQASIQAQSKCPTCRRTLT 267 +C +C+ ++ P I H+FC CI ++ S+CP CR +T Sbjct: 17 TCHICLGKVRQPVICINNHVFCSICIDLWLKNNSQCPACRVPIT 60
>BRE1_CANGA (Q6FWF3) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-)| Length = 693 Score = 41.2 bits (95), Expect = 0.003 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Frame = -2 Query: 395 CPVCMNELVDPSSTICGHIFCQKCIQASIQAQ-SKCPTCRRTLTVNCFHRVYL 240 C +C + + CGH+FC+ C + + A+ KCPTC + + N V+L Sbjct: 641 CSLCSKNWKNMAIRTCGHVFCEDCCKERLAARMRKCPTCNKPFSSNDLLMVHL 693
>NHL1_CAEEL (Q03601) RING finger protein nhl-1| Length = 974 Score = 41.2 bits (95), Expect = 0.003 Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 3/72 (4%) Frame = -2 Query: 485 MIDTVDIPATNRLLKSRAPVKEVRNEPKFSCPVCMNELVDPSSTICGHIFCQKCIQA--- 315 M + + P ++R P++++ E +CP+C++ P C H FC C+++ Sbjct: 15 MRELMSRPPSSRPADFVNPLEKI--EQLLTCPICLDRYKQPKLLPCQHTFCYPCLESCAD 72 Query: 314 SIQAQSKCPTCR 279 ++ KCP CR Sbjct: 73 TLHRNLKCPECR 84
>TRIM4_HUMAN (Q9C037) Tripartite motif protein 4 (RING finger protein 87)| Length = 500 Score = 40.8 bits (94), Expect = 0.003 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%) Frame = -2 Query: 410 EPKFSCPVCMNELVDPSSTICGHIFCQKCIQ---ASIQAQSKCPTCR 279 + + +CP+C++ DP S CGH FC+ C+ A CP CR Sbjct: 7 QEELTCPICLDYFQDPVSIECGHNFCRGCLHRNWAPGGGPFPCPECR 53
>TRI56_HUMAN (Q9BRZ2) Tripartite motif protein 56 (RING finger protein 109)| Length = 755 Score = 40.8 bits (94), Expect = 0.003 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Frame = -2 Query: 398 SCPVCMNELVDPSSTICGHIFCQKCI-QASIQAQSKCPTCRRTLTV 264 +C +C+ +L P + C H +CQ C+ Q + + +CP CR T+ V Sbjct: 20 ACKICLEQLRAPKTLPCLHTYCQDCLAQLADGGRVRCPECRETVPV 65
>RAD5_KLULA (Q6CJM4) DNA repair protein RAD5 (EC 3.6.1.-)| Length = 1114 Score = 40.8 bits (94), Expect = 0.003 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 10/57 (17%) Frame = -2 Query: 407 PKFSCPVCMNELVDPSSTI----CGHIFCQKCIQASIQAQS------KCPTCRRTLT 267 P F C +C E ++P S + C H FC+ C+ I+ Q CP CR ++ Sbjct: 854 PSFECAICTTECIEPLSAVSITECLHTFCEPCLAEYIEFQQNKKLSINCPYCRMPIS 910
>CWC24_CANGA (Q6FXX1) Pre-mRNA-splicing factor CWC24| Length = 226 Score = 40.8 bits (94), Expect = 0.003 Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 1/49 (2%) Frame = -2 Query: 425 KEVRNEP-KFSCPVCMNELVDPSSTICGHIFCQKCIQASIQAQSKCPTC 282 +E R E F C +C P T CGH FCQKC I+ C C Sbjct: 154 EETRKEAVPFKCVLCKESYERPVKTNCGHYFCQKCFVNRIKIDKSCFIC 202
>CWC24_SCHPO (Q9P6R8) Pre-mRNA-splicing factor cwc24 (Complexed with cdc5| protein 24) (Cell cycle control protein cwf24) Length = 533 Score = 40.8 bits (94), Expect = 0.003 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 4/50 (8%) Frame = -2 Query: 419 VRNEPK----FSCPVCMNELVDPSSTICGHIFCQKCIQASIQAQSKCPTC 282 V+NE K F C +C + P +T CGH FC++C +I K PTC Sbjct: 242 VKNEKKEDIPFVCLICKKDYRSPIATTCGHHFCEQC---AITRYRKTPTC 288
>TRI25_HUMAN (Q14258) Tripartite motif protein 25 (Zinc finger protein 147)| (Estrogen-responsive finger protein) (Efp) (RING finger protein 147) Length = 630 Score = 40.8 bits (94), Expect = 0.003 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%) Frame = -2 Query: 404 KFSCPVCMNELVDPSSTICGHIFCQKCIQASIQAQSK---CPTCR 279 + SC +C+ +P +T CGH FC C+ + Q CP CR Sbjct: 10 ELSCSICLEPFKEPVTTPCGHNFCGSCLNETWAVQGSPYLCPQCR 54
>TRAF7_MOUSE (Q922B6) E3 ubiquitin protein ligase TRAF7 (EC 6.3.2.-) (TNF| receptor-associated factor 7) Length = 594 Score = 40.8 bits (94), Expect = 0.003 Identities = 19/47 (40%), Positives = 23/47 (48%) Frame = -2 Query: 404 KFSCPVCMNELVDPSSTICGHIFCQKCIQASIQAQSKCPTCRRTLTV 264 K C +C + DP T CGH FC++C S KCP LTV Sbjct: 52 KLCCQLCCSVFKDPVITTCGHTFCRRCALKS----EKCPVDNAKLTV 94
>PEX12_DROME (Q9VPT5) Putative peroxisome assembly protein 12 (Peroxin-12)| Length = 297 Score = 40.4 bits (93), Expect = 0.004 Identities = 15/52 (28%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Frame = -2 Query: 395 CPVCMNELVDPSS-TICGHIFCQKCIQASIQAQSKCPTCRRTLTVNCFHRVY 243 CPVC+ + P++ ++ G++FC KCI + ++ CP ++++ R+Y Sbjct: 244 CPVCLLSIQTPTACSVSGYVFCWKCIVSHMKEHGTCPVTHYPISLDDLVRIY 295
>RING1_RAT (Q6MGB6) Polycomb complex protein RING1 (RING finger protein 1)| Length = 406 Score = 40.4 bits (93), Expect = 0.004 Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 2/44 (4%) Frame = -2 Query: 395 CPVCMNELVDPSSTI-CGHIFCQKCIQASIQAQSK-CPTCRRTL 270 CP+C++ L + +T C H FC CI ++++ +K CPTCR+ L Sbjct: 48 CPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKL 91
>RING1_MOUSE (O35730) Polycomb complex protein RING1 (RING finger protein 1)| (Transcription repressor Ring1A) Length = 406 Score = 40.4 bits (93), Expect = 0.004 Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 2/44 (4%) Frame = -2 Query: 395 CPVCMNELVDPSSTI-CGHIFCQKCIQASIQAQSK-CPTCRRTL 270 CP+C++ L + +T C H FC CI ++++ +K CPTCR+ L Sbjct: 48 CPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKL 91
>RING1_HUMAN (Q06587) Polycomb complex protein RING1 (RING finger protein 1)| Length = 406 Score = 40.4 bits (93), Expect = 0.004 Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 2/44 (4%) Frame = -2 Query: 395 CPVCMNELVDPSSTI-CGHIFCQKCIQASIQAQSK-CPTCRRTL 270 CP+C++ L + +T C H FC CI ++++ +K CPTCR+ L Sbjct: 48 CPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKL 91
>RING1_CANFA (Q5TJF3) Ubiquitin ligase protein RING1 (EC 6.3.2.-) (RING finger| protein 1) (RING1a) Length = 406 Score = 40.4 bits (93), Expect = 0.004 Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 2/44 (4%) Frame = -2 Query: 395 CPVCMNELVDPSSTI-CGHIFCQKCIQASIQAQSK-CPTCRRTL 270 CP+C++ L + +T C H FC CI ++++ +K CPTCR+ L Sbjct: 48 CPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKL 91
>ATL4B_ARATH (Q9M0R6) Putative RING-H2 finger protein ATL4B precursor| Length = 302 Score = 40.4 bits (93), Expect = 0.004 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 4/48 (8%) Frame = -2 Query: 395 CPVCMNELVDPSSTI----CGHIFCQKCIQASIQAQSKCPTCRRTLTV 264 C +C++E VD + C H F CI + +QS CP CR L++ Sbjct: 123 CAICLSEFVDKETLRWMPPCSHTFHANCIDVWLSSQSTCPACRANLSL 170
>LNX1_MOUSE (O70263) Ubiquitin ligase LNX (EC 6.3.2.-) (Numb-binding protein 1)| (Ligand of Numb-binding protein 1) (Ligand of Numb-protein X 1) Length = 728 Score = 40.4 bits (93), Expect = 0.004 Identities = 14/44 (31%), Positives = 24/44 (54%) Frame = -2 Query: 395 CPVCMNELVDPSSTICGHIFCQKCIQASIQAQSKCPTCRRTLTV 264 C +C+ L+DP T CGH +C C+ + + CP R+ + + Sbjct: 45 CHICLQALLDPLDTPCGHTYCTLCLTNFLVEKDFCPVDRKPVVL 88
>UHRF1_HUMAN (Q96T88) Ubiquitin-like PHD and RING finger domain-containing| protein 1 (EC 6.3.2.-) (Ubiquitin-like-containing PHD and RING finger domains protein 1) (Inverted CCAAT box-binding protein of 90 kDa) (Transcription factor ICBP90) (Nuclear zinc Length = 793 Score = 40.4 bits (93), Expect = 0.004 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Frame = -2 Query: 410 EPKFSCPVCMNELVDPSSTICGHIFCQKCIQASIQAQ-SKCPTCRRTL 270 E F C C + P +T+C H C+ C+ S +AQ CP CR L Sbjct: 719 EETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDL 766
>VPS11_MOUSE (Q91W86) Vacuolar protein sorting 11| Length = 941 Score = 40.4 bits (93), Expect = 0.004 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 5/57 (8%) Frame = -2 Query: 437 RAPVKEVRNEPKF----SCPVCMNELVDPS-STICGHIFCQKCIQASIQAQSKCPTC 282 R ++E++ PK C +C + L PS +CGH F Q C ++ ++ + CPTC Sbjct: 804 RQEIQELKASPKIFQKTKCSICNSALELPSVHFLCGHSFHQHCFESYSESDADCPTC 860
>VPS11_HUMAN (Q9H270) Vacuolar protein sorting 11 (hVPS11) (RING finger protein| 108) Length = 941 Score = 40.4 bits (93), Expect = 0.004 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 5/57 (8%) Frame = -2 Query: 437 RAPVKEVRNEPKF----SCPVCMNELVDPS-STICGHIFCQKCIQASIQAQSKCPTC 282 R ++E++ PK C +C + L PS +CGH F Q C ++ ++ + CPTC Sbjct: 804 RQEIQELKASPKIFQKTKCSICNSALELPSVHFLCGHSFHQHCFESYSESDADCPTC 860
>RING1_MACMU (Q8WMN5) Polycomb complex protein RING1 (RING finger protein 1)| Length = 377 Score = 40.4 bits (93), Expect = 0.004 Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 2/44 (4%) Frame = -2 Query: 395 CPVCMNELVDPSSTI-CGHIFCQKCIQASIQAQSK-CPTCRRTL 270 CP+C++ L + +T C H FC CI ++++ +K CPTCR+ L Sbjct: 19 CPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKL 62
>RNG2A_XENLA (Q66J69) Ubiquitin ligase protein RING2-A (EC 6.3.2.-) (RING finger| protein 2-A) (RING finger protein 1B-A) (RING1b-A) Length = 344 Score = 40.4 bits (93), Expect = 0.004 Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 2/44 (4%) Frame = -2 Query: 395 CPVCMNELVDPSSTI-CGHIFCQKCIQASIQAQSK-CPTCRRTL 270 CP+C++ L + +T C H FC CI ++++ +K CPTCR+ L Sbjct: 48 CPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKL 91
>RAD18_YARLI (Q6CHI1) Postreplication repair ubiquitin-protein ligase E3 RAD18| (EC 6.-.-.-) Length = 344 Score = 40.4 bits (93), Expect = 0.004 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 2/65 (3%) Frame = -2 Query: 470 DIPATNRLLKSR-APVKEVRNEPKFSCPVCMNELVDPSSTICGHIFCQKCIQASI-QAQS 297 DIP + + S+ + +K+V + C +C P T CGH FC CIQ + Sbjct: 4 DIPDPSDWIDSKLSGLKDV--DETLRCHICKEFFTAPMITGCGHTFCSLCIQRYLTNTSQ 61 Query: 296 KCPTC 282 +CPTC Sbjct: 62 RCPTC 66
>TRAF5_MOUSE (P70191) TNF receptor-associated factor 5| Length = 558 Score = 40.4 bits (93), Expect = 0.004 Identities = 17/43 (39%), Positives = 26/43 (60%) Frame = -2 Query: 410 EPKFSCPVCMNELVDPSSTICGHIFCQKCIQASIQAQSKCPTC 282 E ++ C C + L +P T CGH FCQ+CI+ S++ + P C Sbjct: 40 EERYKCAFCHSVLHNPHQTGCGHRFCQQCIR-SLRELNSVPIC 81
>RNG2B_XENLA (Q7ZWM8) Ubiquitin ligase protein RING2-B (EC 6.3.2.-) (RING finger| protein 2-B) (RING finger protein 1B-B) (RING1b-B) Length = 343 Score = 40.4 bits (93), Expect = 0.004 Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 2/44 (4%) Frame = -2 Query: 395 CPVCMNELVDPSSTI-CGHIFCQKCIQASIQAQSK-CPTCRRTL 270 CP+C++ L + +T C H FC CI ++++ +K CPTCR+ L Sbjct: 47 CPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKL 90
>TRIM3_RAT (O70277) Tripartite motif protein 3 (RING finger protein 22)| (Brain-expressed RING finger protein) Length = 744 Score = 40.4 bits (93), Expect = 0.004 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 3/44 (6%) Frame = -2 Query: 395 CPVCMNELVDPSSTICGHIFCQKCIQASIQAQS---KCPTCRRT 273 C +C++ P C H FC++C+Q I QS CP CR+T Sbjct: 22 CSICLDRYRCPKVLPCLHTFCERCLQNYIPPQSLTLSCPVCRQT 65
>TRIM3_MOUSE (Q9R1R2) Tripartite motif protein 3 (RING finger protein 22) (RING| finger protein HAC1) Length = 744 Score = 40.4 bits (93), Expect = 0.004 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 3/44 (6%) Frame = -2 Query: 395 CPVCMNELVDPSSTICGHIFCQKCIQASIQAQS---KCPTCRRT 273 C +C++ P C H FC++C+Q I QS CP CR+T Sbjct: 22 CSICLDRYRCPKVLPCLHTFCERCLQNYIPPQSLTLSCPVCRQT 65
>ATL5L_ARATH (Q9FIR0) Putative RING-H2 finger protein ATL5L| Length = 289 Score = 40.4 bits (93), Expect = 0.004 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 6/62 (9%) Frame = -2 Query: 428 VKEVRNEPK-FSCPVCMNELVDPSS-----TICGHIFCQKCIQASIQAQSKCPTCRRTLT 267 VK++R + C +C+ E + T C H+F Q+CI +++ CP CRR L Sbjct: 102 VKDLREDKYGLECAICLLEFEEEHILLRLLTTCYHVFHQECIDQWLESNKTCPVCRRNLD 161 Query: 266 VN 261 N Sbjct: 162 PN 163
>PZRN4_HUMAN (Q6ZMN7) PDZ domain-containing RING finger protein 4 (Ligand of| Numb-protein X 4) (SEMACAP3-like protein) Length = 1036 Score = 40.0 bits (92), Expect = 0.006 Identities = 17/55 (30%), Positives = 26/55 (47%) Frame = -2 Query: 410 EPKFSCPVCMNELVDPSSTICGHIFCQKCIQASIQAQSKCPTCRRTLTVNCFHRV 246 +P C +C L +P T CGH+FC C+ + +CP + L +RV Sbjct: 13 DPALECKLCGQVLEEPLCTPCGHVFCASCLLPWAVRRRRCPLQCQPLAPGELYRV 67
>UHRF1_RAT (Q7TPK1) Ubiquitin-like PHD and RING finger domain-containing| protein 1 (EC 6.3.2.-) (Ubiquitin-like-containing PHD and RING finger domains protein 1) (Liver regeneration-related protein LRRG126) Length = 774 Score = 40.0 bits (92), Expect = 0.006 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Frame = -2 Query: 401 FSCPVCMNELVDPSSTICGHIFCQKCIQASIQAQ-SKCPTCRRTLTVNCFHRVYLP 237 F C C + P +T+C H C+ C+ S +AQ CP CR L + RV P Sbjct: 703 FQCICCQELVFRPVTTVCQHNVCKDCLDRSFRAQVFSCPACRYDLDHSSPTRVNQP 758
>TRI27_MOUSE (Q62158) Zinc-finger protein RFP (Ret finger protein) (Tripartite| motif protein 27) Length = 513 Score = 40.0 bits (92), Expect = 0.006 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 3/45 (6%) Frame = -2 Query: 398 SCPVCMNELVDPSSTICGHIFCQKCIQ---ASIQAQSKCPTCRRT 273 +CPVC+ V+P CGH C C+ + + CP CR T Sbjct: 15 TCPVCLQYFVEPMMLDCGHNICCACLARCWGAAETNVSCPQCRET 59
>BRE1_ASHGO (Q757D9) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-)| Length = 643 Score = 40.0 bits (92), Expect = 0.006 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Frame = -2 Query: 395 CPVCMNELVDPSSTICGHIFCQKCIQASIQAQ-SKCPTCRRTLTVNCFHRVYL 240 C +C D CGH+FC C + + A+ KCPTC + + N V+L Sbjct: 591 CSLCSKNWKDTVIKTCGHVFCADCCKERLAARMRKCPTCNKGFSSNDLLVVHL 643
>CWC24_CANAL (Q5ACW2) Pre-mRNA-splicing factor CWC24| Length = 216 Score = 40.0 bits (92), Expect = 0.006 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%) Frame = -2 Query: 428 VKEVRNEPKFSCPVCMNELVDPSSTICGHIFCQKCIQASIQAQSK--CPTCRR 276 VKE + P F C +C ++ P T CGHIFC+ C +A+ K C C + Sbjct: 146 VKEKEDIP-FKCVLCKSDYKSPIKTECGHIFCKACFLDRYKAKKKGTCFICHK 197
>BRE1_KLULA (Q6CWM4) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-)| Length = 663 Score = 40.0 bits (92), Expect = 0.006 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Frame = -2 Query: 395 CPVCMNELVDPSSTICGHIFCQKCIQASIQAQ-SKCPTCRRTLTVNCFHRVYL 240 C +C + + CGH+FC C + + A+ KCPTC + + N ++L Sbjct: 611 CSLCSKNWKNTALKTCGHVFCDVCCKERLAARMRKCPTCNKPFSSNDLLSIHL 663
>TRAF7_HUMAN (Q6Q0C0) E3 ubiquitin protein ligase TRAF7 (EC 6.3.2.-) (TNF| receptor-associated factor 7) (Ring finger and WD repeat domain 1) (RING finger protein 119) Length = 670 Score = 40.0 bits (92), Expect = 0.006 Identities = 19/47 (40%), Positives = 23/47 (48%) Frame = -2 Query: 404 KFSCPVCMNELVDPSSTICGHIFCQKCIQASIQAQSKCPTCRRTLTV 264 K C +C + DP T CGH FC++C S KCP LTV Sbjct: 128 KLCCQLCCSVFKDPVITTCGHTFCRRCALKS----EKCPVDNVKLTV 170
>RAG1_BRARE (O13033) V(D)J recombination-activating protein 1 (RAG-1)| Length = 1057 Score = 40.0 bits (92), Expect = 0.006 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%) Frame = -2 Query: 458 TNRLLKSRAPVKEVRNEPKFSCPVCMNELVDPSSTICGHIFCQKCIQASIQAQS-KCPTC 282 + +L+ + P +R +C VC + L DP + C H+FC+ CI A CPTC Sbjct: 278 STKLIPTEVPADLIR---AVTCQVCDHLLSDPVQSPCRHLFCRLCIIRYTHALGPNCPTC 334 Query: 281 RRTL 270 + L Sbjct: 335 NQHL 338
>TRI50_MOUSE (Q810I2) Tripartite motif protein 50| Length = 483 Score = 40.0 bits (92), Expect = 0.006 Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 3/59 (5%) Frame = -2 Query: 437 RAPVKEVRNEPKFSCPVCMNELVDPSSTICGHIFCQKC---IQASIQAQSKCPTCRRTL 270 R V E++++ CP+C+ +P CGH +C+ C + + ++ CP CR+++ Sbjct: 4 RLTVPELQDQ--LQCPICLEVFKEPLMLQCGHSYCKDCLDNLSQHLDSELCCPVCRQSV 60
>RAD5_YEAST (P32849) DNA repair protein RAD5 (EC 3.6.1.-) (Radiation sensitivity| protein 5) (Revertibility protein 2) Length = 1169 Score = 40.0 bits (92), Expect = 0.006 Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 28/112 (25%) Frame = -2 Query: 521 QHDHPRANNNNLMID-TVDIPATNRLLKSR----------------APVKEVRNEP--KF 399 ++D + NN L+ + TV++ + R++ R VK N+ Sbjct: 853 ENDEDLSKNNKLVTEQTVELDSLMRVVSERFDNSFSKEELDAMIQRLKVKYPDNKSFQSL 912 Query: 398 SCPVCMNELVDPSSTI---CGHIFCQKCIQASIQAQS------KCPTCRRTL 270 C +C E +D + CGH FC+KC+ I+ Q+ KCP CR + Sbjct: 913 ECSICTTEPMDLDKALFTECGHSFCEKCLFEYIEFQNSKNLGLKCPNCRNQI 964
>RAD5_ASHGO (Q753V5) DNA repair protein RAD5 (EC 3.6.1.-)| Length = 1085 Score = 40.0 bits (92), Expect = 0.006 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 10/49 (20%) Frame = -2 Query: 395 CPVCMNELVDPSSTI----CGHIFCQKCIQASIQAQSK------CPTCR 279 C +C E + P +++ CGH FC+ C+ IQ Q+K CP CR Sbjct: 832 CSICTCEAISPLTSVVFTRCGHPFCESCLLEYIQFQNKKGSETICPNCR 880
>ATL3B_ARATH (Q8RXX9) RING-H2 finger protein ATL3B precursor (RING-H2 finger| protein ATL6) Length = 398 Score = 39.7 bits (91), Expect = 0.007 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%) Frame = -2 Query: 404 KFSCPVCMNELVDPSSTI----CGHIFCQKCIQASIQAQSKCPTCRRTL 270 + C +C+NE D + C H+F CI A ++A CP CR L Sbjct: 125 ELECAICLNEFEDDETLRLLPKCDHVFHPHCIDAWLEAHVTCPVCRANL 173
>TRI47_MOUSE (Q8C0E3) Tripartite motif protein 47| Length = 641 Score = 39.7 bits (91), Expect = 0.007 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 11/52 (21%) Frame = -2 Query: 401 FSCPVCMNELVDPSSTICGHIFCQKCIQASIQAQS-----------KCPTCR 279 FSCP+C+ L +P + CGH FC C+ A +S +CP C+ Sbjct: 7 FSCPICLEPLREPVTLPCGHNFCLACLGALWPHRSAGGTGGSGGPARCPLCQ 58
>RING2_PONPY (Q5R9J5) Ubiquitin ligase protein RING2 (EC 6.3.2.-) (RING finger| protein 2) (RING finger protein 1B) (RING1b) Length = 336 Score = 39.7 bits (91), Expect = 0.007 Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 2/44 (4%) Frame = -2 Query: 395 CPVCMNELVDPSSTI-CGHIFCQKCIQASIQAQSK-CPTCRRTL 270 CP+C++ L + +T C H FC CI ++++ +K CPTCR+ L Sbjct: 51 CPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKL 94
>RING2_MOUSE (Q9CQJ4) Ubiquitin ligase protein RING2 (EC 6.3.2.-) (RING finger| protein 2) (RING finger protein 1B) (RING1b) Length = 336 Score = 39.7 bits (91), Expect = 0.007 Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 2/44 (4%) Frame = -2 Query: 395 CPVCMNELVDPSSTI-CGHIFCQKCIQASIQAQSK-CPTCRRTL 270 CP+C++ L + +T C H FC CI ++++ +K CPTCR+ L Sbjct: 51 CPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKL 94
>RING2_HUMAN (Q99496) Ubiquitin ligase protein RING2 (EC 6.3.2.-) (RING finger| protein 2) (RING finger protein 1B) (RING1b) (RING finger protein BAP-1) (DinG protein) (Huntingtin-interacting protein 2-interacting protein 3) (HIP2-interacting protein 3) Length = 336 Score = 39.7 bits (91), Expect = 0.007 Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 2/44 (4%) Frame = -2 Query: 395 CPVCMNELVDPSSTI-CGHIFCQKCIQASIQAQSK-CPTCRRTL 270 CP+C++ L + +T C H FC CI ++++ +K CPTCR+ L Sbjct: 51 CPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKL 94
>RING2_BRARE (Q803I4) Ubiquitin ligase protein RING2 (EC 6.3.2.-) (RING finger| protein 2) (RING finger protein 1B) (RING1b) Length = 336 Score = 39.7 bits (91), Expect = 0.007 Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 2/44 (4%) Frame = -2 Query: 395 CPVCMNELVDPSSTI-CGHIFCQKCIQASIQAQSK-CPTCRRTL 270 CP+C++ L + +T C H FC CI ++++ +K CPTCR+ L Sbjct: 51 CPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKL 94
>UHRF1_MOUSE (Q8VDF2) Ubiquitin-like PHD and RING finger domain-containing| protein 1 (EC 6.3.2.-) (Ubiquitin-like-containing PHD and RING finger domains protein 1) (Nuclear zinc finger protein Np95) (Nuclear protein 95) Length = 782 Score = 39.7 bits (91), Expect = 0.007 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Frame = -2 Query: 401 FSCPVCMNELVDPSSTICGHIFCQKCIQASIQAQ-SKCPTCRRTLTVNCFHRVYLP 237 F C C + P +T+C H C+ C+ S +AQ CP CR L + RV P Sbjct: 711 FQCICCQELVFRPVTTVCQHNVCKDCLDRSFRAQVFSCPACRFELDHSSPTRVNQP 766
>RAG1_XENLA (Q91829) V(D)J recombination-activating protein 1 (RAG-1)| Length = 1045 Score = 39.7 bits (91), Expect = 0.007 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%) Frame = -2 Query: 398 SCPVCMNELVDPSSTICGHIFCQKCIQASIQAQS-KCPTCR 279 SC VC + L DP T C H+FC+ CI I+ CP+C+ Sbjct: 293 SCLVCEHILSDPVQTSCKHLFCRICILKYIKLMGCYCPSCK 333
>SINA3_ARATH (Q84JL3) Ubiquitin ligase SINAT3 (EC 6.3.2.-) (Seven in absentia| homolog 3) Length = 326 Score = 39.7 bits (91), Expect = 0.007 Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 1/82 (1%) Frame = -2 Query: 512 HPRANNNNLMIDTVDIPATNRLLKSRAPVKEVRNEPKFSCPVCMNELVDPSSTIC-GHIF 336 H NNN ++ A + LL + V E+ CPVC N + P GH Sbjct: 33 HHHTNNNTTNVNA----AASGLLPTTTSVHEL-----LECPVCTNSMYPPIHQCHNGHTL 83 Query: 335 CQKCIQASIQAQSKCPTCRRTL 270 C C + ++CPTCR+ L Sbjct: 84 CSTC---KARVHNRCPTCRQEL 102
>RING1_DROME (Q9VB08) Ubiquitin ligase protein RING1 (EC 6.3.2.-) (dRING1)| (dRING protein) (Sex comb extra protein) Length = 435 Score = 39.7 bits (91), Expect = 0.007 Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 2/44 (4%) Frame = -2 Query: 395 CPVCMNELVDPSSTI-CGHIFCQKCIQASIQAQSK-CPTCRRTL 270 CP+C++ L +T C H FC CI ++++ +K CPTCR+ L Sbjct: 46 CPICLDMLKKTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKL 89
>RING2_RAT (Q4KLY4) Ubiquitin ligase protein RING2 (EC 6.3.2.-) (RING finger| protein 2) (RING finger protein 1B) (RING1b) Length = 308 Score = 39.7 bits (91), Expect = 0.007 Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 2/44 (4%) Frame = -2 Query: 395 CPVCMNELVDPSSTI-CGHIFCQKCIQASIQAQSK-CPTCRRTL 270 CP+C++ L + +T C H FC CI ++++ +K CPTCR+ L Sbjct: 51 CPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKL 94
>RN146_RAT (Q5XIK5) RING finger protein 146| Length = 352 Score = 39.3 bits (90), Expect = 0.010 Identities = 13/42 (30%), Positives = 22/42 (52%) Frame = -2 Query: 395 CPVCMNELVDPSSTICGHIFCQKCIQASIQAQSKCPTCRRTL 270 C +C+ V P S C H+FC C++ + +C CR+ + Sbjct: 36 CAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEI 77
>CWC24_YEAST (P53769) Pre-mRNA-splicing factor CWC24 (Complexed with CEF1| protein 24) Length = 259 Score = 39.3 bits (90), Expect = 0.010 Identities = 17/55 (30%), Positives = 26/55 (47%) Frame = -2 Query: 440 SRAPVKEVRNEPKFSCPVCMNELVDPSSTICGHIFCQKCIQASIQAQSKCPTCRR 276 S+A ++ P F C +C + P T CGH FC C ++ +KC C + Sbjct: 185 SKAVTLDLEKIP-FKCTLCKEDYKSPVVTNCGHYFCGSCFAKDMKKGTKCFICHK 238
>RN146_MOUSE (Q9CZW6) RING finger protein 146| Length = 359 Score = 39.3 bits (90), Expect = 0.010 Identities = 13/42 (30%), Positives = 22/42 (52%) Frame = -2 Query: 395 CPVCMNELVDPSSTICGHIFCQKCIQASIQAQSKCPTCRRTL 270 C +C+ V P S C H+FC C++ + +C CR+ + Sbjct: 38 CAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEI 79
>RN146_HUMAN (Q9NTX7) RING finger protein 146 (Dactylidin)| Length = 359 Score = 39.3 bits (90), Expect = 0.010 Identities = 13/42 (30%), Positives = 22/42 (52%) Frame = -2 Query: 395 CPVCMNELVDPSSTICGHIFCQKCIQASIQAQSKCPTCRRTL 270 C +C+ V P S C H+FC C++ + +C CR+ + Sbjct: 37 CAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEI 78
>CWC24_USTMA (Q4P400) Pre-mRNA-splicing factor CWC24| Length = 355 Score = 39.3 bits (90), Expect = 0.010 Identities = 15/47 (31%), Positives = 20/47 (42%) Frame = -2 Query: 422 EVRNEPKFSCPVCMNELVDPSSTICGHIFCQKCIQASIQAQSKCPTC 282 + ++ F+C +C DP T C H FC C SKC C Sbjct: 255 DTEDDIPFACLICRKAFTDPVVTRCAHYFCSSCAIKRFAKNSKCFAC 301
>RN146_PONPY (Q5REL3) RING finger protein 146| Length = 358 Score = 39.3 bits (90), Expect = 0.010 Identities = 13/42 (30%), Positives = 22/42 (52%) Frame = -2 Query: 395 CPVCMNELVDPSSTICGHIFCQKCIQASIQAQSKCPTCRRTL 270 C +C+ V P S C H+FC C++ + +C CR+ + Sbjct: 36 CAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEI 77
>CM007_MOUSE (Q8K2Y0) Protein C13orf7 homolog| Length = 722 Score = 39.3 bits (90), Expect = 0.010 Identities = 14/44 (31%), Positives = 24/44 (54%) Frame = -2 Query: 398 SCPVCMNELVDPSSTICGHIFCQKCIQASIQAQSKCPTCRRTLT 267 +C +C+ ++ P H+FC CI ++ S+CP CR +T Sbjct: 17 TCHICLGKVRQPVVCTNNHVFCSICIDLWLKNNSQCPACRVPIT 60
>TRAF5_HUMAN (O00463) TNF receptor-associated factor 5 (RING finger protein 84)| Length = 557 Score = 39.3 bits (90), Expect = 0.010 Identities = 18/45 (40%), Positives = 25/45 (55%) Frame = -2 Query: 416 RNEPKFSCPVCMNELVDPSSTICGHIFCQKCIQASIQAQSKCPTC 282 R E ++ C C + L +P T CGH FCQ CI S++ + P C Sbjct: 38 RLEERYKCAFCHSVLHNPHQTGCGHRFCQHCI-LSLRELNTVPIC 81
>PEX10_PICPA (Q92265) Peroxisome assembly protein 10 (Peroxin-10) (Peroxisome| biogenesis factor 10) (Peroxisome assembly protein PAS7) Length = 419 Score = 39.3 bits (90), Expect = 0.010 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 4/65 (6%) Frame = -2 Query: 410 EPKFSCPVCMNELVDPSSTICGHIFCQKC-IQASIQAQSKCPTCRRTLTVNCFHRV---Y 243 E C +C++ + +P++ CGH FC C I + Q+ ++ NC+H + Y Sbjct: 293 ESSRQCMLCLSYMTNPTAANCGHCFCWSCIIDWCKERQTVLCVGKKCWNSNCYHCIRLFY 352 Query: 242 LPTMD 228 +PT++ Sbjct: 353 IPTLN 357
>RAD18_DEBHA (Q6BLM3) Postreplication repair ubiquitin-protein ligase E3 RAD18| (EC 6.-.-.-) Length = 491 Score = 39.3 bits (90), Expect = 0.010 Identities = 18/52 (34%), Positives = 23/52 (44%) Frame = -2 Query: 395 CPVCMNELVDPSSTICGHIFCQKCIQASIQAQSKCPTCRRTLTVNCFHRVYL 240 C +C L P T C H FC CI+ + S CP C+ + RV L Sbjct: 36 CYICKEFLKAPVITSCNHTFCSHCIREYLIVNSHCPLCKAEQFESNLKRVIL 87
>YR311_MIMIV (Q5UPZ3) Hypothetical RING finger protein R311| Length = 659 Score = 38.9 bits (89), Expect = 0.013 Identities = 14/45 (31%), Positives = 21/45 (46%) Frame = -2 Query: 395 CPVCMNELVDPSSTICGHIFCQKCIQASIQAQSKCPTCRRTLTVN 261 CPVC ++ + ICGH C C+ + CP C + +N Sbjct: 502 CPVCYDDDYIKTKLICGHTVCLTCVLNILPNSKGCPLCMEPININ 546
>EL5_ORYSA (Q9LRB7) E3 ubiquitin ligase EL5 (EC 6.3.2.-)| Length = 325 Score = 38.9 bits (89), Expect = 0.013 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 4/61 (6%) Frame = -2 Query: 434 APVKEVRNEPKFSCPVCMNELVDPSSTI----CGHIFCQKCIQASIQAQSKCPTCRRTLT 267 A +E ++ C VC+ EL D CGH F +C+ + + S CP CR T+ Sbjct: 121 AKEEEEEDDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 180 Query: 266 V 264 V Sbjct: 181 V 181
>ATL5I_ARATH (Q9FL07) RING-H2 finger protein ATL5I| Length = 376 Score = 38.9 bits (89), Expect = 0.013 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 4/48 (8%) Frame = -2 Query: 401 FSCPVCMNELVDPSST----ICGHIFCQKCIQASIQAQSKCPTCRRTL 270 F C VC+ E + +C H F CI +Q+ S CP CR TL Sbjct: 141 FDCAVCLCEFSEKDKLRLLPMCSHAFHLNCIDTWLQSNSTCPLCRGTL 188
>RAD5_NEUCR (Q7S1P9) DNA repair protein rad-5 (EC 3.6.1.-)| Length = 1222 Score = 38.9 bits (89), Expect = 0.013 Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 7/62 (11%) Frame = -2 Query: 428 VKEVRNEPKFSCPVCMNE-LVDPSSTICGHIFCQKCIQASIQAQS------KCPTCRRTL 270 ++++R+E CP+C E ++D + T C H C+KC+ I+ Q+ +C CR + Sbjct: 950 LRQIRDEAVNECPICAEEPMIDQAVTGCWHSACKKCLLDYIKHQTDRNEVPRCFQCREHI 1009 Query: 269 TV 264 + Sbjct: 1010 NI 1011
>RAD5_DEBHA (Q6BIP2) DNA repair protein RAD5 (EC 3.6.1.-)| Length = 1153 Score = 38.9 bits (89), Expect = 0.013 Identities = 31/124 (25%), Positives = 48/124 (38%), Gaps = 6/124 (4%) Frame = -2 Query: 620 DMVPPNTNMGTLLPGEAPDEHVNTLLSLGMNPTQHDHPRANNNNLMIDTVDIPATNRLLK 441 ++V PNT++ VN +L L HD NN + +V P L Sbjct: 854 ELVDPNTDLSEANGESDSISMVNNVLDLYHADNNHDEKFKNNTE--VRSVMFP-----LY 906 Query: 440 SRAPVKEVRNEPKFSCPVCMNELVDPSSTICGHIFCQKCIQASIQAQSK------CPTCR 279 + +KE P+ + E+ + T CGH +C C+ Q K CP CR Sbjct: 907 EKIDLKESECSICTQSPIPLGEM---ALTPCGHAYCLNCVLEHFDFQEKNLQKPLCPNCR 963 Query: 278 RTLT 267 ++ Sbjct: 964 EPIS 967
>TRI47_HUMAN (Q96LD4) Tripartite motif protein 47 (Gene overexpressed in| astrocytoma protein) (RING finger protein 100) Length = 638 Score = 38.9 bits (89), Expect = 0.013 Identities = 14/29 (48%), Positives = 19/29 (65%) Frame = -2 Query: 401 FSCPVCMNELVDPSSTICGHIFCQKCIQA 315 FSCP+C+ L +P + CGH FC C+ A Sbjct: 7 FSCPICLEPLREPVTLPCGHNFCLACLGA 35
>RN126_MOUSE (Q91YL2) RING finger protein 126| Length = 313 Score = 38.9 bits (89), Expect = 0.013 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 3/58 (5%) Frame = -2 Query: 431 PVKEVRNEPKFSCPVCMNELVDPSSTI---CGHIFCQKCIQASIQAQSKCPTCRRTLT 267 PV E CPVC + S C H+F CI ++ CP CR++LT Sbjct: 219 PVTEEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLT 276
>CHFR_MOUSE (Q810L3) Ubiquitin-protein ligase CHFR (EC 6.3.2.-) (Checkpoint| with forkhead and RING finger domains protein) Length = 664 Score = 38.9 bits (89), Expect = 0.013 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Frame = -2 Query: 434 APVKEVRNEPKFSCPVCMNELVD-PSSTICGHIFCQKCIQASIQAQSKCPTCR 279 A VK + E +C +C + L D S C H FC C ++ S CPTCR Sbjct: 290 ASVKPDKMEETLTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSSLCPTCR 342
>RN141_RAT (Q6IV57) RING finger protein 141| Length = 230 Score = 38.9 bits (89), Expect = 0.013 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 3/57 (5%) Frame = -2 Query: 428 VKEVRNEPKFSCPVCMN---ELVDPSSTICGHIFCQKCIQASIQAQSKCPTCRRTLT 267 VK++ +E + C +CM+ +L+ P C H FCQKCI CP CR +T Sbjct: 146 VKQLTDEEE--CCICMDGRADLILP----CAHSFCQKCIDKWSDRHRNCPICRLQMT 196
>RN141_PONPY (Q5R7K8) RING finger protein 141| Length = 230 Score = 38.9 bits (89), Expect = 0.013 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 3/57 (5%) Frame = -2 Query: 428 VKEVRNEPKFSCPVCMN---ELVDPSSTICGHIFCQKCIQASIQAQSKCPTCRRTLT 267 VK++ +E + C +CM+ +L+ P C H FCQKCI CP CR +T Sbjct: 146 VKQLTDEEE--CCICMDGRADLILP----CAHSFCQKCIDKWSDRHRNCPICRLQMT 196
>RN141_MOUSE (Q99MB7) RING finger protein 141 (Zinc finger protein 230)| Length = 230 Score = 38.9 bits (89), Expect = 0.013 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 3/57 (5%) Frame = -2 Query: 428 VKEVRNEPKFSCPVCMN---ELVDPSSTICGHIFCQKCIQASIQAQSKCPTCRRTLT 267 VK++ +E + C +CM+ +L+ P C H FCQKCI CP CR +T Sbjct: 146 VKQLTDEEE--CCICMDGRADLILP----CAHSFCQKCIDKWSDRHRNCPICRLQMT 196
>RN141_HUMAN (Q8WVD5) RING finger protein 141 (Zinc finger protein 230)| Length = 230 Score = 38.9 bits (89), Expect = 0.013 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 3/57 (5%) Frame = -2 Query: 428 VKEVRNEPKFSCPVCMN---ELVDPSSTICGHIFCQKCIQASIQAQSKCPTCRRTLT 267 VK++ +E + C +CM+ +L+ P C H FCQKCI CP CR +T Sbjct: 146 VKQLTDEEE--CCICMDGRADLILP----CAHSFCQKCIDKWSDRHRNCPICRLQMT 196
>TRI10_PANTR (Q7YR32) Tripartite motif protein 10 (RING finger protein 9)| (B30-RING finger protein) Length = 481 Score = 38.9 bits (89), Expect = 0.013 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 7/71 (9%) Frame = -2 Query: 446 LKSRAPVKEVRNEPKFSCPVCMNELVDPSSTICGHIFCQKCIQ-------ASIQAQSKCP 288 + S A V + +E +CP+C L +P + CGH FC+ C+ ++ CP Sbjct: 1 MASAASVTSLADE--VNCPICQGTLREPVTIDCGHNFCRACLTRYCEIPGPDLEESPTCP 58 Query: 287 TCRRTLTVNCF 255 C+ F Sbjct: 59 LCKEPFRPGSF 69
>TRI10_HUMAN (Q9UDY6) Tripartite motif protein 10 (RING finger protein 9)| (B30-RING finger protein) Length = 481 Score = 38.9 bits (89), Expect = 0.013 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 7/71 (9%) Frame = -2 Query: 446 LKSRAPVKEVRNEPKFSCPVCMNELVDPSSTICGHIFCQKCIQ-------ASIQAQSKCP 288 + S A V + +E +CP+C L +P + CGH FC+ C+ ++ CP Sbjct: 1 MASAASVTSLADE--VNCPICQGTLREPVTIDCGHNFCRACLTRYCEIPGPDLEESPTCP 58 Query: 287 TCRRTLTVNCF 255 C+ F Sbjct: 59 LCKEPFRPGSF 69
>IAP1_NPVAC (P41435) Apoptosis inhibitor 1 (IAP-1)| Length = 286 Score = 38.9 bits (89), Expect = 0.013 Identities = 19/48 (39%), Positives = 24/48 (50%) Frame = -2 Query: 410 EPKFSCPVCMNELVDPSSTICGHIFCQKCIQASIQAQSKCPTCRRTLT 267 E K+ C VC+ D C H FC C+Q KCPTCR+ +T Sbjct: 233 EEKYECKVCLERQRDAVLMPCRH-FCV-CVQCYFGLDQKCPTCRQDVT 278
>PRT1_ARATH (Q8LBL5) Ubiquitin protein ligase PRT1 (EC 6.3.2.-) (Proteolysis 1| protein) Length = 410 Score = 38.5 bits (88), Expect = 0.017 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%) Frame = -2 Query: 404 KFSCPVCMNELVDPSSTICGHIFCQKCIQASIQA--QSKCPTCR 279 +F C VC+ L P CGH+ C C+ S+ +S CP CR Sbjct: 23 QFLCCVCLELLYKPIVLSCGHLSCFWCVHKSMNGFRESHCPICR 66 Score = 37.4 bits (85), Expect = 0.037 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 2/60 (3%) Frame = -2 Query: 455 NRLLKSRAPVKEVRNEPKFSCPVCMNELVDPSSTICGHIFCQKCI--QASIQAQSKCPTC 282 N LLK K++ + C C LV P CGH++C+ C+ A + KC C Sbjct: 173 NELLKDNKVSKQISKDDLL-CSACKELLVRPVVLNCGHVYCEGCVVDMAEESEKIKCQEC 231
>TRIM8_MOUSE (Q99PJ2) Tripartite motif protein 8 (RING finger protein 27)| (Glioblastoma-expressed RING finger protein) Length = 551 Score = 38.5 bits (88), Expect = 0.017 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%) Frame = -2 Query: 410 EPKFSCPVCMNELVDPSSTICGHIFCQKCIQASIQAQS---KCPTCRR 276 E + CP+C++ V+P C H FC+ CI + S +CP C + Sbjct: 10 EEELICPICLHVFVEPVQLPCKHNFCRGCIGEAWAKDSGLVRCPECNQ 57
>TRIM8_HUMAN (Q9BZR9) Tripartite motif protein 8 (RING finger protein 27)| (Glioblastoma-expressed RING finger protein) Length = 551 Score = 38.5 bits (88), Expect = 0.017 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%) Frame = -2 Query: 410 EPKFSCPVCMNELVDPSSTICGHIFCQKCIQASIQAQS---KCPTCRR 276 E + CP+C++ V+P C H FC+ CI + S +CP C + Sbjct: 10 EEELICPICLHVFVEPVQLPCKHNFCRGCIGEAWAKDSGLVRCPECNQ 57
>TRI27_HUMAN (P14373) Zinc-finger protein RFP (Ret finger protein) (Tripartite| motif protein 27) (RING finger protein 76) Length = 513 Score = 38.5 bits (88), Expect = 0.017 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 3/45 (6%) Frame = -2 Query: 398 SCPVCMNELVDPSSTICGHIFCQKCIQ---ASIQAQSKCPTCRRT 273 +CPVC+ +P CGH C C+ + + CP CR T Sbjct: 15 TCPVCLQYFAEPMMLDCGHNICCACLARCWGTAETNVSCPQCRET 59
>TRI18_MUSSP (P82457) Midline-1 (Tripartite motif protein 18)| Length = 667 Score = 38.5 bits (88), Expect = 0.017 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 12/62 (19%) Frame = -2 Query: 410 EPKFSCPVCMNELVDPSSTICGHIFCQKCIQASIQAQS------------KCPTCRRTLT 267 E + +CP+C+ L DP C H C C + + +CPTCR +T Sbjct: 5 ESELTCPICLELLEDPLLLPCAHSLCFNCAHRILVSHCATNEPVESINAFQCPTCRHVIT 64 Query: 266 VN 261 ++ Sbjct: 65 LS 66
>ATL4I_ARATH (O49691) Putative RING-H2 finger protein ATL4I| Length = 289 Score = 38.5 bits (88), Expect = 0.017 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 5/58 (8%) Frame = -2 Query: 428 VKEVRNEPK-FSCPVCMNEL----VDPSSTICGHIFCQKCIQASIQAQSKCPTCRRTL 270 VK++R E C +C+ E V T C H+F Q+CI ++ CP CRR L Sbjct: 98 VKDLREEKYGLECAICLLEFDGDHVLRLLTTCYHVFHQECIDLWFESHRTCPVCRRDL 155
>RNF8_HUMAN (O76064) Ubiquitin ligase protein RNF8 (EC 6.3.2.-) (RING finger| protein 8) Length = 485 Score = 38.5 bits (88), Expect = 0.017 Identities = 13/47 (27%), Positives = 24/47 (51%) Frame = -2 Query: 410 EPKFSCPVCMNELVDPSSTICGHIFCQKCIQASIQAQSKCPTCRRTL 270 E + C +C ++ + C H FC CI ++ + +CP CR+ + Sbjct: 398 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDI 444
>ATL5H_ARATH (Q8LGA5) RING-H2 finger protein ATL5H precursor| Length = 368 Score = 38.1 bits (87), Expect = 0.022 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 4/46 (8%) Frame = -2 Query: 395 CPVCMNELVDPSSTI----CGHIFCQKCIQASIQAQSKCPTCRRTL 270 C +C+NE D + C H+F CI A +Q CP CR L Sbjct: 124 CAICLNEFEDDETLRLLPKCDHVFHPHCIGAWLQGHVTCPVCRTNL 169
>RNF41_XENLA (Q5FWL3) RING finger protein 41| Length = 317 Score = 38.1 bits (87), Expect = 0.022 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%) Frame = -2 Query: 395 CPVCMNELVDP-SSTICGHIFCQKCIQASIQAQSKCPTCRRTLTV 264 CP+C L +P + C H FC CI Q CP R +TV Sbjct: 18 CPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVVTV 62
>RNF41_MOUSE (Q8BH75) RING finger protein 41| Length = 317 Score = 38.1 bits (87), Expect = 0.022 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%) Frame = -2 Query: 395 CPVCMNELVDP-SSTICGHIFCQKCIQASIQAQSKCPTCRRTLTV 264 CP+C L +P + C H FC CI Q CP R +TV Sbjct: 18 CPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVVTV 62
>RNF41_HUMAN (Q9H4P4) RING finger protein 41| Length = 317 Score = 38.1 bits (87), Expect = 0.022 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%) Frame = -2 Query: 395 CPVCMNELVDP-SSTICGHIFCQKCIQASIQAQSKCPTCRRTLTV 264 CP+C L +P + C H FC CI Q CP R +TV Sbjct: 18 CPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVVTV 62
>TRI35_MOUSE (Q8C006) Tripartite motif protein 35 (Macrophage-derived| apoptosis-inducing RBCC protein) (MAIR protein) (Nc8 protein) (Hemopoeitic lineage switch protein 5) Length = 501 Score = 38.1 bits (87), Expect = 0.022 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%) Frame = -2 Query: 395 CPVCMNELVDPSSTICGHIFCQKCIQA--SIQAQSKCPTCR 279 C VC + D + CGH FC++C+ +Q CP C+ Sbjct: 21 CAVCYDPFRDAVTLRCGHNFCRRCVSGCWEVQTTPSCPVCK 61
>RNF8_MOUSE (Q8VC56) Ubiquitin ligase protein RNF8 (EC 6.3.2.-) (RING finger| protein 8) (AIP37) (ActA-interacting protein 37) (LaXp180) Length = 488 Score = 38.1 bits (87), Expect = 0.022 Identities = 13/47 (27%), Positives = 24/47 (51%) Frame = -2 Query: 410 EPKFSCPVCMNELVDPSSTICGHIFCQKCIQASIQAQSKCPTCRRTL 270 E + C +C ++ + C H FC CI ++ + +CP CR+ + Sbjct: 401 ENELQCIICSEYFIEAVTLNCAHSFCSFCINEWMKRKVECPICRKDI 447
>YEU6_YEAST (P40072) Hypothetical 30.8 kDa protein in SPR6-RPL23B intergenic| region Length = 274 Score = 38.1 bits (87), Expect = 0.022 Identities = 30/128 (23%), Positives = 51/128 (39%), Gaps = 1/128 (0%) Frame = -2 Query: 620 DMVPPNTNMGTLLPGEAPDEHVNTLLSLGMNPTQHDHPRANNNNLMIDTVDIPATNRLLK 441 D PP T GT + D T ++ ++ + + ++++ +T + P Sbjct: 146 DAAPPTTKPGTNSKEQTVDL---TADAIDLDAEEQQVLQISDDDFQEETKEAP------- 195 Query: 440 SRAPVKEVRNEPKFSCPVCMNELVDPSSTICGHIFCQKCIQASIQAQSKCPTCRR-TLTV 264 KE + CP+C T+CGH+FC C+ Q + TCR+ Sbjct: 196 -----KEYGAAKDYRCPICFEPPETALMTLCGHVFCCPCL---FQMVNSSRTCRQFGHCA 247 Query: 263 NCFHRVYL 240 C +VYL Sbjct: 248 LCRSKVYL 255
>ATL1H_ARATH (Q9C7I1) Putative RING-H2 finger protein ATL1H precursor| Length = 327 Score = 38.1 bits (87), Expect = 0.022 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 4/46 (8%) Frame = -2 Query: 395 CPVCMNELVDPSSTI----CGHIFCQKCIQASIQAQSKCPTCRRTL 270 C +C+NE D + C H F CI + ++S CP CR +L Sbjct: 128 CAICLNEFEDEETLRLMPPCSHAFHASCIDVWLSSRSTCPVCRASL 173
>SIAH2_XENLA (Q9I8X5) Ubiquitin ligase SIAH2 (EC 6.3.2.-) (Seven in absentia| homolog 2) (Xsiah-2) Length = 313 Score = 38.1 bits (87), Expect = 0.022 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Frame = -2 Query: 401 FSCPVCMNELVDPSSTI-CGHIFCQKCIQASIQAQSKCPTCRRTLT 267 F CPVC + ++ P GH+ C +C Q S CPTCR +LT Sbjct: 67 FECPVCFDYVLPPILQCQAGHLVCNQCRQKL----SCCPTCRASLT 108
>RAD18_CANAL (Q5A4N5) Postreplication repair ubiquitin-protein ligase E3 RAD18| (EC 6.-.-.-) Length = 378 Score = 38.1 bits (87), Expect = 0.022 Identities = 13/39 (33%), Positives = 22/39 (56%) Frame = -2 Query: 395 CPVCMNELVDPSSTICGHIFCQKCIQASIQAQSKCPTCR 279 C +C + L P T C H +C +CI+ + ++CP C+ Sbjct: 29 CYICKDLLNAPVRTQCDHTYCSQCIREFLLRDNRCPLCK 67
>ATL1L_ARATH (Q6NQG7) RING-H2 finger protein ATL1L| Length = 219 Score = 37.7 bits (86), Expect = 0.028 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 4/50 (8%) Frame = -2 Query: 395 CPVCMNELVDPSST----ICGHIFCQKCIQASIQAQSKCPTCRRTLTVNC 258 C +C++E V C H F +CI + + S CPTCR L C Sbjct: 131 CAICLSEFVAEERVKLLPTCHHGFHVRCIDKWLSSHSSCPTCRHCLIQTC 180
>ATL1M_ARATH (P0C035) Putative RING-H2 finger protein ATL1M| Length = 310 Score = 37.7 bits (86), Expect = 0.028 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 4/46 (8%) Frame = -2 Query: 395 CPVCMNELVDPSSTI----CGHIFCQKCIQASIQAQSKCPTCRRTL 270 C VC+++LVD C H F CI Q+ S CP CR T+ Sbjct: 120 CAVCLSDLVDGDKARVLPRCNHGFHVDCIDMWFQSHSTCPLCRNTV 165
>RN141_BRARE (Q6IV56) RING finger protein 141| Length = 222 Score = 37.7 bits (86), Expect = 0.028 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 3/57 (5%) Frame = -2 Query: 428 VKEVRNEPKFSCPVCMN---ELVDPSSTICGHIFCQKCIQASIQAQSKCPTCRRTLT 267 VK++ +E + C +CM+ +L+ P C H FCQKCI CP CR +T Sbjct: 138 VKQLTDEEE--CCICMDGKADLILP----CAHSFCQKCIDKWSGQSRNCPVCRIQVT 188
>CWC24_EMENI (Q5AVC5) Pre-mRNA-splicing factor cwc24| Length = 332 Score = 37.7 bits (86), Expect = 0.028 Identities = 17/48 (35%), Positives = 27/48 (56%) Frame = -2 Query: 425 KEVRNEPKFSCPVCMNELVDPSSTICGHIFCQKCIQASIQAQSKCPTC 282 +++ N P F+C +C +P T CGH FC+ C ++Q K P+C Sbjct: 232 EQLENIP-FACIICKKPYQNPIVTKCGHYFCESC---ALQRYRKNPSC 275
>ATL1P_ARATH (Q9XF63) RING-H2 finger protein ATL1P (RING-H2 finger protein ATL3)| Length = 324 Score = 37.7 bits (86), Expect = 0.028 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 4/46 (8%) Frame = -2 Query: 395 CPVCMNELV--DPSSTI--CGHIFCQKCIQASIQAQSKCPTCRRTL 270 C +C++ELV D + + C H F +CI Q+ S CP CR T+ Sbjct: 127 CSICLSELVKGDKARLLPKCNHSFHVECIDMWFQSHSTCPICRNTV 172
>ZN179_HUMAN (Q9ULX5) Zinc finger protein 179 (Brain finger protein) (RING| finger protein 112) Length = 632 Score = 37.7 bits (86), Expect = 0.028 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%) Frame = -2 Query: 398 SCPVCMNELVDPSSTICGHIFCQKCIQASIQAQSK---CPTCRR 276 +C +C+ L DP S CGH FC +C + CP CR+ Sbjct: 56 TCSICLERLRDPISLDCGHDFCIRCFSTHRLPGCEPPCCPECRK 99
>ATL1N_ARATH (Q84W40) RING-H2 finger protein ATL1N precursor| Length = 404 Score = 37.7 bits (86), Expect = 0.028 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 5/58 (8%) Frame = -2 Query: 428 VKEVR-NEPKFSCPVCMNELVDPSSTI----CGHIFCQKCIQASIQAQSKCPTCRRTL 270 VK +R + C VC+NE D + C H+F CI A +++ + CP CR L Sbjct: 132 VKTLRIGKEALECSVCLNEFEDDETLRLIPKCCHVFHPGCIDAWLRSHTTCPLCRADL 189
>CWC24_ASPFU (Q4WUA0) Pre-mRNA-splicing factor cwc24| Length = 339 Score = 37.7 bits (86), Expect = 0.028 Identities = 16/48 (33%), Positives = 25/48 (52%) Frame = -2 Query: 425 KEVRNEPKFSCPVCMNELVDPSSTICGHIFCQKCIQASIQAQSKCPTC 282 +E+ F+C +C + P T CGH FC+ C ++Q K P+C Sbjct: 243 EELLESIPFACIICKSSYKSPIVTKCGHYFCESC---ALQRYRKNPSC 287
>ATL1R_ARATH (Q8LC69) RING-H2 finger protein ATL1R (RING-H2 finger protein ATL8)| Length = 185 Score = 37.4 bits (85), Expect = 0.037 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 4/58 (6%) Frame = -2 Query: 410 EPKFSCPVCMNELV--DPSSTI--CGHIFCQKCIQASIQAQSKCPTCRRTLTVNCFHR 249 E C +C+ E D + CGH F CI + + S CP+CR+ L V H+ Sbjct: 99 EKLVECAICLTEFAAGDELRVLPQCGHGFHVSCIDTWLGSHSSCPSCRQILVVTRCHK 156
>ICP0_PRVIF (P29129) Trans-acting transcriptional protein ICP0 (Early protein| 0) (EP0) Length = 410 Score = 37.4 bits (85), Expect = 0.037 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Frame = -2 Query: 395 CPVCMNELVDPSSTI-CGHIFCQKCIQASIQAQSKCPTCRRTLTVNCFH 252 CP+C++ + T+ C H FC CIQ + CP C +T H Sbjct: 46 CPICLDVAATEAQTLPCMHKFCLDCIQRWTLTSTACPLCNARVTSILHH 94
>PCGF6_MOUSE (Q99NA9) Polycomb group RING finger protein 6 (RING finger protein| 134) (Mel18 and Bmi1-like RING finger) Length = 353 Score = 37.4 bits (85), Expect = 0.037 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Frame = -2 Query: 407 PKFSCPVCMNELVDPSS-TICGHIFCQKCIQASIQAQSKCPTC 282 P C +C L+D ++ T C H FC+ CI ++CP C Sbjct: 133 PYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKC 175
>SIAH2_HUMAN (O43255) Ubiquitin ligase SIAH2 (EC 6.3.2.-) (Seven in absentia| homolog 2) (Siah-2) (hSiah2) Length = 324 Score = 37.4 bits (85), Expect = 0.037 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Frame = -2 Query: 401 FSCPVCMNELVDPSSTI-CGHIFCQKCIQASIQAQSKCPTCRRTLT 267 F CPVC + ++ P GH+ C +C Q S CPTCR LT Sbjct: 78 FECPVCFDYVLPPILQCQAGHLVCNQCRQKL----SCCPTCRGALT 119
>ATL1F_ARATH (Q9LQM2) Putative RING-H2 finger protein ATL1F precursor| Length = 332 Score = 37.4 bits (85), Expect = 0.037 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 4/56 (7%) Frame = -2 Query: 419 VRNEPKFSCPVCMNELVDPSS----TICGHIFCQKCIQASIQAQSKCPTCRRTLTV 264 V++ C +C+ E +D + + C H F CI + CP CRR L V Sbjct: 146 VKDHGTDQCSICLTEFMDDDTIRLISTCNHSFHTICIDLWFEGHKTCPVCRRELDV 201 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 85,907,284 Number of Sequences: 219361 Number of extensions: 1680764 Number of successful extensions: 5040 Number of sequences better than 10.0: 500 Number of HSP's better than 10.0 without gapping: 4719 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4950 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5824436538 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
