>AREG_HUMAN (P15514) Amphiregulin precursor (AR) (Colorectum cell-derived|
           growth factor) (CRDGF)
          Length = 252

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 20/57 (35%), Positives = 26/57 (45%)
 Frame = -3

Query: 420 NAQKSKMARERNLEKLKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAEA 250
           N  +S+   ++   K KGGK  +   N+K  N  C    Q F C   E K  EH EA
Sbjct: 113 NKTESENTSDKPKRKKKGGKNGKNRRNRKKKN-PCNAEFQNF-CIHGECKYIEHLEA 167

>SNUT1_HUMAN (O43290) U4/U6.U5 tri-snRNP-associated protein 1 (U4/U6.U5|
           tri-snRNP-associated 110 kDa protein) (Squamous cell
           carcinoma antigen recognized by T cells 1) (SART-1)
           (hSART-1) (hSnu66)
          Length = 800

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -3

Query: 492 PPNFRRTRKVSSRLAEESTAMGGGNAQKSKMARERNLEKLKGGKGSQLEA 343
           PP  R  +K   R    S   GG   ++ K +RER  E+  G +G++ EA
Sbjct: 29  PPRHREHKKHKHR----SGGSGGSGGERRKRSRERGGERGSGRRGAEAEA 74

>MST2_DROHY (Q08696) Axoneme-associated protein mst101(2)|
          Length = 1391

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
 Frame = -3

Query: 417  AQKSKMARERNLEKLKGGKGSQ------LEANKKAMNIQCKICMQTFICTTSEAKCKEHA 256
            A+K K A E+N  K K GKG +       ++ + A   +C    +      ++ KC+E A
Sbjct: 945  AKKEKKAGEKNKLKKKAGKGKKKCKKLGKKSKRAAEKKKCAEAAKKEKEAATKKKCEERA 1004

Query: 255  EAKHPKSDLVQCFPHLKQ 202
            + +   ++  QC    K+
Sbjct: 1005 KKQKEAAEKKQCEERAKK 1022

>HD2C_ARATH (Q9LZR5) Histone deacetylase 2c (HD-tuins protein 3)|
          Length = 294

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 19/55 (34%), Positives = 25/55 (45%)
 Frame = -3

Query: 408 SKMARERNLEKLKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAEAKH 244
           SK A + +     G    Q +  K A    CK C +TF   TSE   + H +AKH
Sbjct: 239 SKQAGKNSGGGSTGETSKQQQTPKSAGAFGCKSCTRTF---TSEMGLQSHTKAKH 290

>UVRA_VIBPA (Q87LA0) UvrABC system protein A (UvrA protein) (Excinuclease ABC|
           subunit A)
          Length = 940

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
 Frame = -3

Query: 516 AASCFSPSPPNFRRTRKVSS------RLAEESTAMGGGNAQKSKMARERNLEKLKGGK 361
           A + F P P   R+ + +        RL + +T + GG AQ+ K+ARE  L K   GK
Sbjct: 795 ARTFFDPVPAIARKLQTLMDVGLSYIRLGQAATTLSGGEAQRVKLARE--LSKRDTGK 850

>NFAE_ECOLI (P46738) Chaperone protein nfaE precursor|
          Length = 247

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 11/79 (13%)
 Frame = -3

Query: 495 SPPNFRRTRKVSSRLAEESTAMGGGNAQKSKMARE---------RNLEKLKGGKGSQLEA 343
           +PP FRR  + SSR    ST   GG     + +R+         +  ++   GK  + +A
Sbjct: 98  TPPLFRRDGQQSSRRRSVST---GGEFPSDRESRQWICVKGIPPKEDDRWAEGKDGEKKA 154

Query: 342 NKKAMNIQCKI--CMQTFI 292
           +K ++N+Q  +  C++ F+
Sbjct: 155 DKVSLNVQLSVSSCIKLFV 173

>UVRA_VIBCH (Q9KUW5) UvrABC system protein A (UvrA protein) (Excinuclease ABC|
           subunit A)
          Length = 940

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
 Frame = -3

Query: 516 AASCFSPSPPNFRRTRKVSS------RLAEESTAMGGGNAQKSKMARERNLEKLKGGK 361
           A   F P P   R+ + +        RL + +T + GG AQ+ K+ARE  L K   GK
Sbjct: 795 AREFFDPVPVIARKLQTLMDVGLSYIRLGQSATTLSGGEAQRVKLARE--LSKRDTGK 850

>ZN706_MOUSE (Q9D115) Zinc finger protein 706|
          Length = 76

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
 Frame = -3

Query: 414 QKSKMARERNLEKLKGGKGSQ----LEANKKAMNIQCKICMQTFICTTSEAKCKEHAEAK 247
           Q+   ++++N +K  G K  Q      A K A+   C +C             K+H E+K
Sbjct: 5   QQKIQSQQKNAKKQAGQKKKQGHDQKAAAKAALIYTCTVCRTQM---PDPKTFKQHFESK 61

Query: 246 HPKSDL 229
           HPK+ L
Sbjct: 62  HPKTPL 67

>ZN706_HUMAN (Q9Y5V0) Zinc finger protein 706|
          Length = 76

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
 Frame = -3

Query: 414 QKSKMARERNLEKLKGGKGSQ----LEANKKAMNIQCKICMQTFICTTSEAKCKEHAEAK 247
           Q+   ++++N +K  G K  Q      A K A+   C +C             K+H E+K
Sbjct: 5   QQKIQSQQKNAKKQAGQKKKQGHDQKAAAKAALIYTCTVCRTQM---PDPKTFKQHFESK 61

Query: 246 HPKSDL 229
           HPK+ L
Sbjct: 62  HPKTPL 67

>ZN706_CHICK (Q5ZMM5) Zinc finger protein 706|
          Length = 76

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 19/69 (27%), Positives = 28/69 (40%)
 Frame = -3

Query: 435 AMGGGNAQKSKMARERNLEKLKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHA 256
           A G    Q  +   ++  E+ K     Q  A K A+   C +C             K+H 
Sbjct: 2   ARGQQKIQSQQKNAKKQAEQKKKQGHDQKAAAKAALIYTCTVCRTQM---PDPKTFKQHF 58

Query: 255 EAKHPKSDL 229
           E+KHPK+ L
Sbjct: 59  ESKHPKTPL 67

>UBP1_HUMAN (O94782) Ubiquitin carboxyl-terminal hydrolase 1 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 1) (Ubiquitin-specific
           processing protease 1) (Deubiquitinating enzyme 1)
           (hUBP)
          Length = 785

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
 Frame = -3

Query: 498 PSPPNFRRTRKVSSRLAEESTAMG-GGNAQKSKMARERNLEK--LKGGKGSQ--LEANKK 334
           P P N    R V     +E  ++  GGN Q SK+  ++N+E   L GG+ S+   E   K
Sbjct: 624 PEPLNEEEARGVVENYNDEEVSIRVGGNTQPSKVLNKKNVEAIGLLGGQKSKADYELYNK 683

Query: 333 AMN 325
           A N
Sbjct: 684 ASN 686

>UVRA_VIBVY (Q7MHB5) UvrABC system protein A (UvrA protein) (Excinuclease ABC|
           subunit A)
          Length = 940

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
 Frame = -3

Query: 504 FSPSPPNFRRTRKVSS------RLAEESTAMGGGNAQKSKMARERNLEKLKGGK 361
           F+P P   R+ + +        RL + +T + GG AQ+ K+ARE  L K   GK
Sbjct: 799 FAPVPVIARKLQTLMDVGLSYIRLGQAATTLSGGEAQRVKLARE--LSKRDTGK 850

>UVRA_VIBVU (Q8DCJ3) UvrABC system protein A (UvrA protein) (Excinuclease ABC|
           subunit A)
          Length = 940

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
 Frame = -3

Query: 504 FSPSPPNFRRTRKVSS------RLAEESTAMGGGNAQKSKMARERNLEKLKGGK 361
           F+P P   R+ + +        RL + +T + GG AQ+ K+ARE  L K   GK
Sbjct: 799 FAPVPVIARKLQTLMDVGLSYIRLGQAATTLSGGEAQRVKLARE--LSKRDTGK 850

>AREG_RAT (P24338) Amphiregulin precursor (AR) (Schwannoma-derived growth|
           factor) (SDGF)
          Length = 243

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = -3

Query: 420 NAQKSKMARERNLEKLKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAE 253
           N  + + + E+   K KGGKG +   N+K     C    Q F C   E +  E+ E
Sbjct: 103 NKTEGEKSSEKPKRKKKGGKGGKGRRNRKKKKNPCAAKFQNF-CIHGECRYIENLE 157


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,314,527
Number of Sequences: 219361
Number of extensions: 1063945
Number of successful extensions: 3613
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3611
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4027872870
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)