>RFBX_ECOLI (P37746) Putative O-antigen transporter|
          Length = 415

 Score = 36.2 bits (82), Expect = 0.082
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +3

Query: 483 HCVLFW*VKPQLIGGLQQPDWMGERSEAMNWSSVSFLSSR 602
           H V+ W   P L+G L  P W+ +  E M W ++S + SR
Sbjct: 116 HAVIIWSFVPALVGNLIYPIWLFQGKEKMKWLTLSSILSR 155

>RERE_MOUSE (Q80TZ9) Arginine-glutamic acid dipeptide repeats protein|
            (Atrophin-2)
          Length = 1558

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -2

Query: 526  PPISCGFTYQNSTQWTGPAKSTEPDCSAWSNDGAFCYGCQSC 401
            PPI+       ST   GP+ S++P CSA  + G    G  SC
Sbjct: 1037 PPITPPSCPPTSTPPAGPSSSSQPPCSAAVSSGGSVPGAPSC 1078

>RERE_RAT (Q62901) Arginine-glutamic acid dipeptide repeats protein|
            (Atrophin-1-related protein)
          Length = 1559

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -2

Query: 526  PPISCGFTYQNSTQWTGPAKSTEPDCSAWSNDGAFCYGCQSC 401
            PPI+       ST   GP+ S++P CSA  + G    G  SC
Sbjct: 1037 PPITPPSCPPTSTPPAGPSSSSQPPCSAAVSSGGNVPGAPSC 1078

>CO1A2_HUMAN (P08123) Collagen alpha-2(I) chain precursor|
          Length = 1366

 Score = 29.6 bits (65), Expect = 7.7
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -1

Query: 629 PPGRQGLQVPRGQEGDARPVHGLRSLPHP 543
           PPG QG+Q  +G++G A P  G + LP P
Sbjct: 533 PPGPQGVQGGKGEQGPAGP-PGFQGLPGP 560

>CO1A2_CANFA (O46392) Collagen alpha-2(I) chain precursor|
          Length = 1366

 Score = 29.6 bits (65), Expect = 7.7
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -1

Query: 629 PPGRQGLQVPRGQEGDARPVHGLRSLPHP 543
           PPG QG+Q  +G++G A P  G + LP P
Sbjct: 533 PPGPQGVQGGKGEQGPAGP-PGFQGLPGP 560

>CO1A2_RAT (P02466) Collagen alpha-2(I) chain precursor|
          Length = 1372

 Score = 29.6 bits (65), Expect = 7.7
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -1

Query: 629 PPGRQGLQVPRGQEGDARPVHGLRSLPHP 543
           PPG QG+Q  +G++G A P  G + LP P
Sbjct: 539 PPGPQGVQGGKGEQGPAGP-PGFQGLPGP 566

>CO1A2_MOUSE (Q01149) Collagen alpha-2(I) chain precursor|
          Length = 1372

 Score = 29.6 bits (65), Expect = 7.7
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -1

Query: 629 PPGRQGLQVPRGQEGDARPVHGLRSLPHP 543
           PPG QG+Q  +G++G A P  G + LP P
Sbjct: 539 PPGPQGVQGGKGEQGPAGP-PGFQGLPGP 566

>CO1A2_BOVIN (P02465) Collagen alpha-2(I) chain precursor|
          Length = 1364

 Score = 29.6 bits (65), Expect = 7.7
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -1

Query: 629 PPGRQGLQVPRGQEGDARPVHGLRSLPHP 543
           PPG QG+Q  +G++G A P  G + LP P
Sbjct: 531 PPGLQGVQGGKGEQGPAGP-PGFQGLPGP 558


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,812,983
Number of Sequences: 219361
Number of extensions: 1075423
Number of successful extensions: 3298
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3292
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5824436538
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)