ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd15m03 |
|---|---|
| Clone Library Name | barley_pub |
>SGAT_ARATH (Q56YA5) Serine--glyoxylate aminotransferase (EC 2.6.1.45)| (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) (Serine--pyruvate aminotransferase) (EC 2.6.1.51) Length = 401 Score = 227 bits (579), Expect = 2e-59 Identities = 109/139 (78%), Positives = 125/139 (89%) Frame = -2 Query: 579 LDLLFEEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTVTAVVVPPYIDSSEI 400 LDL+FEEGL+N+I RH RLG ATRLAV AWGLKNCT+KEE S+TVTAV+VPP+ID SEI Sbjct: 263 LDLIFEEGLENIIARHARLGKATRLAVEAWGLKNCTQKEEWISNTVTAVMVPPHIDGSEI 322 Query: 399 VKHAWKRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLGGVEMVLKDIGYPVKLGSG 220 V+ AW+RYNLSLGLGLNKVAGKVFRIGHLG++NELQLLGCL GVEM+LKD+GYPV +GSG Sbjct: 323 VRRAWQRYNLSLGLGLNKVAGKVFRIGHLGNVNELQLLGCLAGVEMILKDVGYPVVMGSG 382 Query: 219 VAAAAAYLSNSTPLIPSRI 163 VAAA+ YL + PLIPSRI Sbjct: 383 VAAASTYLQHHIPLIPSRI 401
>SGAA_METEX (P55819) Serine--glyoxylate aminotransferase (EC 2.6.1.45) (SGAT)| Length = 379 Score = 157 bits (396), Expect = 3e-38 Identities = 80/128 (62%), Positives = 97/128 (75%) Frame = -2 Query: 579 LDLLFEEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTVTAVVVPPYIDSSEI 400 L LFEEGL+NV RH LG ATR AVAAWGLK C + E SDTVTA++ P +D+++I Sbjct: 244 LACLFEEGLENVYHRHAVLGEATRQAVAAWGLKTCAKSPEWNSDTVTAILAPEGVDAAKI 303 Query: 399 VKHAWKRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLGGVEMVLKDIGYPVKLGSG 220 +KHA+ RYNL+LG GL++VAGKVFRIGH+G LNEL LLG + G EM L D G V GSG Sbjct: 304 IKHAYVRYNLALGAGLSQVAGKVFRIGHVGDLNELSLLGAIAGAEMSLIDNGVKVTPGSG 363 Query: 219 VAAAAAYL 196 VAAA++YL Sbjct: 364 VAAASSYL 371
>SGAA_HYPME (O08374) Serine--glyoxylate aminotransferase (EC 2.6.1.45) (SGAT)| Length = 404 Score = 154 bits (390), Expect = 2e-37 Identities = 80/131 (61%), Positives = 95/131 (72%) Frame = -2 Query: 579 LDLLFEEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTVTAVVVPPYIDSSEI 400 LDLLF EGLDNV RHTRL + R AV AWGLK C ++ + +SDTV+A++VP IDS+ I Sbjct: 258 LDLLFAEGLDNVFARHTRLASGVRAAVDAWGLKLCAKEPKWYSDTVSAILVPEGIDSNAI 317 Query: 399 VKHAWKRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLGGVEMVLKDIGYPVKLGSG 220 K A+ RYN S GLGLNKVAGKVFRIGHLG L+E+ + G L EM LKD G +KLGSG Sbjct: 318 TKTAYYRYNTSFGLGLNKVAGKVFRIGHLGMLDEVMIGGALFAAEMALKDNGVNLKLGSG 377 Query: 219 VAAAAAYLSNS 187 AAA Y S + Sbjct: 378 TGAAAEYFSKN 388
>Y959_METJA (Q58369) Putative aminotransferase MJ0959 (EC 2.6.1.-)| Length = 385 Score = 88.2 bits (217), Expect = 2e-17 Identities = 53/128 (41%), Positives = 75/128 (58%) Frame = -2 Query: 579 LDLLFEEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTVTAVVVPPYIDSSEI 400 LDL+ EEG++N +KRH RL ATR + A G++ KE S TVT+ P I+ S+ Sbjct: 257 LDLVLEEGIENRVKRHERLAKATRAGLEAMGIE-LFAKERARSVTVTSAKYPEGIEDSKF 315 Query: 399 VKHAWKRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLGGVEMVLKDIGYPVKLGSG 220 +YN+ + G +AGK+FRIGH+G E ++L L VE+ LK++G+ VK SG Sbjct: 316 RGILSNKYNIVVAGGQKHLAGKIFRIGHMGICGEKEVLATLACVELALKELGFEVK-ESG 374 Query: 219 VAAAAAYL 196 V A L Sbjct: 375 VEVAKEVL 382
>DHSS_ANACY (P16421) Soluble hydrogenase 42 kDa subunit (EC 1.12.-.-) (Tritium| exchange subunit) Length = 383 Score = 79.3 bits (194), Expect = 8e-15 Identities = 48/142 (33%), Positives = 82/142 (57%), Gaps = 1/142 (0%) Frame = -2 Query: 612 PSSSSTAYAPGLDLLFEEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTVTAV 433 P + A L ++ +EGL+++ RH R ATR A+ A L +E S +TAV Sbjct: 244 PVNLMVALHTTLGMMKKEGLESIFTRHERQKNATRAAMKALNLP-LFAADECASPAITAV 302 Query: 432 VVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLGGVEMVLK 253 P +++ +I KR++++L G + ++ K+FR+GHLG +++ +L C+ +E+VL Sbjct: 303 ATPG-MEADKIRSLMKKRFDIALAGGQDHLSNKIFRVGHLGFVSDRDILSCIASLEVVLL 361 Query: 252 DIGYP-VKLGSGVAAAAAYLSN 190 ++G+ G+GVAAAA SN Sbjct: 362 ELGHENFNSGAGVAAAARVFSN 383
>DHSS_SYNP1 (P14776) Soluble hydrogenase, small subunit (EC 1.12.-.-) (Tritium| exchange subunit) Length = 384 Score = 73.9 bits (180), Expect = 3e-13 Identities = 47/137 (34%), Positives = 77/137 (56%), Gaps = 1/137 (0%) Frame = -2 Query: 594 AYAPGLDLLFEEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTVTAVVVPPYI 415 A L+++ EGL+ + +RH RL ATR A+ A L + S +TAV P + Sbjct: 250 ALKTALEMMQAEGLEAIFQRHQRLMQATRAAMKALNLP-LYAADSCASPAITAVA-PQGV 307 Query: 414 DSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLGGVEMVLKDIGYP- 238 ++ I KR++++L G + + G++FRIGHLG + + +L + +E VL ++GY Sbjct: 308 EAENIRSLMKKRFDIALAGGQDHLKGQIFRIGHLGFVGDRDILAAVSALEAVLAELGYTN 367 Query: 237 VKLGSGVAAAAAYLSNS 187 G+GVAAA+ LS + Sbjct: 368 FTPGAGVAAASRVLSTA 384
>SPYA_CALJA (P31029) Serine--pyruvate aminotransferase, mitochondrial precursor| (EC 2.6.1.51) (SPT) (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) Length = 414 Score = 52.8 bits (125), Expect = 8e-07 Identities = 34/104 (32%), Positives = 49/104 (47%) Frame = -2 Query: 621 HARPSSSSTAYAPGLDLLFEEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTV 442 H P S + GL LL E+GL+N ++H + A GL+ + TV Sbjct: 284 HTTPVVSLYSLREGLALLSEQGLENSWRKHREAAAYLHGRLQALGLRLFVKDPALRLPTV 343 Query: 441 TAVVVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLG 310 T V VP D +IV + +R+ + + GL GKV RIG +G Sbjct: 344 TTVAVPTGYDWRDIVSYLIERFGIEITGGLGPSTGKVLRIGLMG 387
>PUCG_BACSU (O32148) Purine catabolism protein pucG (EC 2.-.-.-)| Length = 416 Score = 51.2 bits (121), Expect = 2e-06 Identities = 37/146 (25%), Positives = 64/146 (43%), Gaps = 1/146 (0%) Frame = -2 Query: 621 HARPSSSSTAYAPGLDLLFEEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTV 442 H ++ A G+ L+ EEGL+ +RH A + A GL+ + V Sbjct: 266 HTEATTMLYALREGVRLVLEEGLETRFERHRHHEAALAAGIKAMGLRLFGDDSCKMP-VV 324 Query: 441 TAVVVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLGH-LNELQLLGCLGGVE 265 T V +P ID + ++ + + +AGK++RIG +G+ + +L L G+E Sbjct: 325 TCVEIPGGIDGESVRDMLLAQFGIEIASSFGPLAGKIWRIGTMGYSCRKENVLFVLAGLE 384 Query: 264 MVLKDIGYPVKLGSGVAAAAAYLSNS 187 VL ++ G + AA N+ Sbjct: 385 AVLLRHNAGIEAGKALQAALDVYENA 410
>SPYA_RAT (P09139) Serine--pyruvate aminotransferase, mitochondrial precursor| (EC 2.6.1.51) (SPT) (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) Length = 414 Score = 49.3 bits (116), Expect = 9e-06 Identities = 32/105 (30%), Positives = 46/105 (43%) Frame = -2 Query: 621 HARPSSSSTAYAPGLDLLFEEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTV 442 H P S L L+ E+GL+N +RH + GLK + E T+ Sbjct: 284 HTLPVISLYCLRESLALISEQGLENSWRRHREATAHLHKCLRELGLKFFVKDPEIRLPTI 343 Query: 441 TAVVVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLGH 307 T V VP + +IV + +N+ + GL KV RIG LG+ Sbjct: 344 TTVTVPAGYNWRDIVSYVLDHFNIEISGGLGPSEDKVLRIGLLGY 388
>SPYA_HUMAN (P21549) Serine--pyruvate aminotransferase (EC 2.6.1.51) (SPT)| (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) Length = 392 Score = 46.6 bits (109), Expect = 6e-05 Identities = 32/104 (30%), Positives = 47/104 (45%) Frame = -2 Query: 621 HARPSSSSTAYAPGLDLLFEEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTV 442 H P S + L L+ E+GL+N ++H + A GL+ + TV Sbjct: 262 HTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQALGLQLFVKDPALRLPTV 321 Query: 441 TAVVVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLG 310 T V VP D +IV + +++ + GL GKV RIG LG Sbjct: 322 TTVAVPAGYDWRDIVSYVIDHFDIEIMGGLGPSTGKVLRIGLLG 365
>SPYA_FELCA (P41689) Serine--pyruvate aminotransferase, mitochondrial precursor| (EC 2.6.1.51) (SPT) (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) Length = 414 Score = 46.6 bits (109), Expect = 6e-05 Identities = 31/104 (29%), Positives = 47/104 (45%) Frame = -2 Query: 621 HARPSSSSTAYAPGLDLLFEEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTV 442 H P S + L L+ E+GL+N ++H + + GL+ + TV Sbjct: 284 HTTPVVSLYSLRESLALIAEQGLENSWRQHREVTAYLHGRLQGLGLQLFVKDPALRLPTV 343 Query: 441 TAVVVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLG 310 T V VP D +IV + +++ + GL GKV RIG LG Sbjct: 344 TTVAVPAGYDWRDIVNYVMDHFDIEITGGLGPSMGKVLRIGLLG 387
>SPYA_RABIT (P31030) Serine--pyruvate aminotransferase (EC 2.6.1.51) (SPT)| (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) Length = 392 Score = 43.5 bits (101), Expect = 5e-04 Identities = 31/104 (29%), Positives = 44/104 (42%) Frame = -2 Query: 621 HARPSSSSTAYAPGLDLLFEEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTV 442 H P A L LL E+GL+ +RH + + GL+ + TV Sbjct: 262 HTTPVIGIFALRESLALLVEQGLEKSWQRHREVAQHLYRRLQELGLQLFVKDPALRLPTV 321 Query: 441 TAVVVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLG 310 T V+VP +IV + + + + GL A KV RIG LG Sbjct: 322 TTVIVPASYRWRDIVSYVMHHFGIEITGGLGPSADKVLRIGLLG 365
>SPYA_MOUSE (O35423) Serine--pyruvate aminotransferase, mitochondrial precursor| (EC 2.6.1.51) (SPT) (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) Length = 413 Score = 42.0 bits (97), Expect = 0.001 Identities = 29/105 (27%), Positives = 45/105 (42%) Frame = -2 Query: 621 HARPSSSSTAYAPGLDLLFEEGLDNVIKRHTRLGTATRLAVAAWGLKNCTEKEENFSDTV 442 H P +S L L+ E GL+N +RH + GLK + E T+ Sbjct: 284 HTTPVTSLYCLRESLALIAERGLENCWRRHREATAHLHKHLQEMGLKFFVKDPEIRLPTI 343 Query: 441 TAVVVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLGH 307 T V Y + +IV + +++ + GL +V RIG LG+ Sbjct: 344 TTVTAAGY-NWRDIVSYVLDHFSIEISGGLGPTEERVLRIGLLGY 387
>SGAT_MAIZE (P84187) Serine--glyoxylate aminotransferase (EC 2.6.1.45) (SGAT)| (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) (Fragments) Length = 136 Score = 40.0 bits (92), Expect = 0.006 Identities = 28/62 (45%), Positives = 30/62 (48%), Gaps = 4/62 (6%) Frame = -2 Query: 405 EIVKHAW---KRYNLSLGLGLNKVA-GKVFRIGHLGHLNELQLLGCLGGVEMVLKDIGYP 238 E+ AW RYNLSLGLGLNKVA GKVFR D+GYP Sbjct: 99 ELAVEAWGLSNRYNLSLGLGLNKVAGGKVFR------------------------DVGYP 134 Query: 237 VK 232 VK Sbjct: 135 VK 136
>CEFD_NOCLA (Q03046) Isopenicillin N epimerase (EC 5.1.1.17)| Length = 398 Score = 32.7 bits (73), Expect = 0.89 Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 3/85 (3%) Frame = -2 Query: 567 FEEGLDN--VIKRHTRLGTATRLAVAAW-GLKNCTEKEENFSDTVTAVVVPPYIDSSEIV 397 F+ GL + V +R L TR ++ W GL+ T S +TA +PP D++ + Sbjct: 292 FQAGLGHGRVRERMRELAAFTRERLSGWRGLEPVTPAHPGLSGAMTAFRLPPGTDTAGLR 351 Query: 396 KHAWKRYNLSLGLGLNKVAGKVFRI 322 W R+ + + + L++ G + R+ Sbjct: 352 HGLWDRFRIDVPV-LDRPDGPLLRV 375
>LAS17_YEAST (Q12446) Proline-rich protein LAS17| Length = 633 Score = 32.7 bits (73), Expect = 0.89 Identities = 16/32 (50%), Positives = 17/32 (53%), Gaps = 1/32 (3%) Frame = +3 Query: 189 NSRGTPPRPPRRCQAS-PGTRCP*APSPPRRG 281 N+R PP PP R G R P P PPRRG Sbjct: 320 NNRPVPPPPPMRTTTEGSGVRLPAPPPPPRRG 351
>F100A_RAT (Q6AXN0) Protein FAM100A| Length = 176 Score = 31.6 bits (70), Expect = 2.0 Identities = 15/44 (34%), Positives = 20/44 (45%) Frame = +2 Query: 191 FERYAAAAATPLPSFTGYPMSLSTISTPPRQPRSCSSLRWPRWP 322 F R A+ + +G PM+ S S PP P + S P WP Sbjct: 81 FSRLKASESFHSGGSSGSPMATSATSPPPHFPHATGSFATPSWP 124
>POLN_RUBVT (P13889) Nonstructural polyprotein [Contains: Protease (EC| 3.4.22.-) (p150); RNA-directed RNA polymerase/helicase (EC 2.7.7.48) (EC 3.6.1.-) (p90)] Length = 2115 Score = 31.6 bits (70), Expect = 2.0 Identities = 15/33 (45%), Positives = 19/33 (57%) Frame = +3 Query: 189 NSRGTPPRPPRRCQASPGTRCP*APSPPRRGNP 287 ++RGTPP P R P P P+PPR G+P Sbjct: 740 DARGTPPPAPAR---DPPPPAPSPPAPPRAGDP 769
>YGHE_ECOLI (Q46833) Putative general secretion pathway protein L-type yghE| Length = 286 Score = 29.6 bits (65), Expect = 7.6 Identities = 17/53 (32%), Positives = 22/53 (41%) Frame = +2 Query: 167 LEGMRGVEFERYAAAAATPLPSFTGYPMSLSTISTPPRQPRSCSSLRWPRWPI 325 L G + ER A LP+ T Y + T P QPR +W RW + Sbjct: 87 LSAWAGADAERLTVTA---LPAITTYGEPEGNLLTGPWQPRVSYRKQWARWRV 136
>UCN1_HUMAN (P55089) Urocortin precursor| Length = 124 Score = 29.3 bits (64), Expect = 9.9 Identities = 18/56 (32%), Positives = 27/56 (48%) Frame = -1 Query: 280 PRRGGDGAQGHRVPGEAWQRRGGRGGVPLEFHAPHPLQNLSKFHAQKQGGREEKNK 113 PRR G G G GE +R + L FH L L++ +Q++ R E+N+ Sbjct: 63 PRRAGPGRLGLGTAGERPRRDNPSLSIDLTFHLLRTLLELARTQSQRE--RAEQNR 116 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 74,512,128 Number of Sequences: 219361 Number of extensions: 1465873 Number of successful extensions: 6127 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 5445 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6096 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5710231900 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
