ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd16a20 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome Length = 134545 Score = 1120 bits (565), Expect = 0.0 Identities = 651/683 (95%), Gaps = 3/683 (0%) Strand = Plus / Plus Query: 1 aatactttatttaatttactcctatttattactcctggnaattatctatttatcgggnac 60 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || Sbjct: 32837 aatactttatttaatttactcctatttattactcctgg-aattatctatttatcggg-ac 32894 Query: 61 agnataataccgcattctaggaagggctgagttgagtatgattaatttagaagatatgct 120 || |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 32895 ag-ataataccccattctaggaagggctgagttgagtattattaatttagaagatatgct 32953 Query: 121 cgccttcttatttcccgtccttagtttaggaaagtggaaagttttttccttttattttag 180 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 32954 caccttcttatttcccgtccttagtttaggaaagtggaaagttttttccttttattttag 33013 Query: 181 gaattttgggaacggaacatttcaacaaaggaagcctttcaccggtcaaacaagacctaa 240 ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||| Sbjct: 33014 gaattttgggaacagaacatttcaacaaaggaagtctttcaccggtcaaacaagacgtaa 33073 Query: 241 gacttaatctaaaagaaattactagattgaatctatttgcattnnnnnnnccgatcaaaa 300 ||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 33074 gacttaatctaaaagaaattactagattgaatctatttgcattaaaaaaaccgatcaaaa 33133 Query: 301 aagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataagag 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 33134 aagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataagag 33193 Query: 361 gagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcactggccatccgctg 420 ||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 33194 gagagcatatgaaaaatgtaacccattctttcgtttttttagctcactggccatccgctg 33253 Query: 421 gcagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtagtgg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 33254 gcagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtagtgg 33313 Query: 481 ttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctatttcaagaataga 540 |||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 33314 ttggtgttttgattttttttggaaagggagtgtgtgcgagttgtctatttcaagaataga 33373 Query: 541 ttggatctatccggctgcactttagaatattttttagtatttttcggataaataagaaaa 600 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 33374 ttggatctatccggctgcactttataatattttttagtatttttcggataaataagaaaa 33433 Query: 601 gggtgcacgatctcgacgaattacttctgaataaattcagaaatcatatggaagaaccat 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 33434 gggtgcacgatctcgacgaattacttctgaataaattcagaaatcatatggaagaaccat 33493 Query: 661 agcatttcgcgactcattggtaa 683 ||||||||||||||||||||||| Sbjct: 33494 agcatttcgcgactcattggtaa 33516
>emb|X02595.1|CHTAATP1 T.aestivum chloroplast gene encoding ATP synthase CF-O subunit I & III Length = 2007 Score = 1092 bits (551), Expect = 0.0 Identities = 651/685 (95%), Gaps = 5/685 (0%) Strand = Plus / Plus Query: 1 aatactttatttaatttactcctatttattactcctggnaattatctatttatcgggnac 60 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || Sbjct: 154 aatactttatttaatttactcctatttattactcctgg-aattatctatttatcggg-ac 211 Query: 61 agnataataccgcattctaggaagggctg-agttg-agtatgattaatttagaagatatg 118 || |||||||| ||||||||||||||||| ||||| ||||| |||||||||||||||||| Sbjct: 212 ag-ataataccccattctaggaagggctggagttggagtattattaatttagaagatatg 270 Query: 119 ctcgccttcttatttcccgtccttagtttaggaaagtggaaagttttttccttttatttt 178 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 271 ctcaccttcttatttcccgtccttagtttaggaaagtggaaagttttttccttttatttt 330 Query: 179 aggaattttgggaacggaacatttcaacaaaggaagcctttcaccggtcaaacaagacct 238 ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| | Sbjct: 331 aggaattttgggaacagaacatttcaacaaaggaagtctttcaccggtcaaacaagacgt 390 Query: 239 aagacttaatctaaaagaaattactagattgaatctatttgcattnnnnnnnccgatcaa 298 ||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 391 aagacttaatctaaaagaaattactagattgaatctatttgcattaaaaaaaccgatcaa 450 Query: 299 aaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataag 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 451 aaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataag 510 Query: 359 aggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcactggccatccgc 418 ||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 511 aggagagcatatgaaaaatgtaacccattctttcgtttttttagctcactggccatccgc 570 Query: 419 tggcagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtagt 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 571 tggcagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtagt 630 Query: 479 ggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctatttcaagaata 538 |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 631 ggttggtgttttgattttttttggaaagggagtgtgtgcgagttgtctatttcaagaata 690 Query: 539 gattggatctatccggctgcactttagaatattttttagtatttttcggataaataagaa 598 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 691 gattggatctatccggctgcactttataatattttttagtatttttcggataaataagaa 750 Query: 599 aagggtgcacgatctcgacgaattacttctgaataaattcagaaatcatatggaagaacc 658 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 751 aagggtgcacgatctcgacgaattacttctgaataaattcagaaatcatatggaagaacc 810 Query: 659 atagcatttcgcgactcattggtaa 683 ||||||||||||||||||||||||| Sbjct: 811 atagcatttcgcgactcattggtaa 835
>emb|X86563.2|ZMA86563 Zea mays complete chloroplast genome Length = 140384 Score = 767 bits (387), Expect = 0.0 Identities = 549/605 (90%), Gaps = 9/605 (1%) Strand = Plus / Plus Query: 81 gaagggctgagttgagtatgattaatttagaagatatgctcgccttcttatttcccgtcc 140 |||||||||| ||||| ||||| |||||||| |||||||||||| |||| ||||||||| Sbjct: 34813 gaagggctgatttgagcatgatcaatttagaggatatgctcgccctcttccttcccgtcc 34872 Query: 141 ttagtttaggaaagtggaaagt-tttttccttttattttaggaattttgggaacggaaca 199 ||||||||||| |||||||||| ||||||||||||||||||||||||||||||| | Sbjct: 34873 ttagtttaggacagtggaaagtatttttccttttattttaggaattttgggaac-----a 34927 Query: 200 tttcaacaaaggaagcctttcaccggtcaaacaagacctaagacttaatctaaaagaaat 259 ||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||| Sbjct: 34928 tttcaacaaaggagatctttcacaggtcaaacgagacctaagacttaatctaaaagaaat 34987 Query: 260 tactagattgaatctatttgcattnnnnnnnccgatcaaaaaagggcgagcgaagtaagt 319 || ||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct: 34988 tattagattgaatctatttgcattaaaaaaaccgatcaaaaaaggacgagcgaagtaagt 35047 Query: 320 gatcgaaaaactttgttctttgttcgtcctatctataagaggagagcatatgaaaaatgt 379 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 35048 aatcgaaaaactttcttctttgttcgtcctatctataagaggagagcatatgaaaaatgt 35107 Query: 380 aacccattctttcgnnnnnnnagctcactggccatccgctggcagtttcgggcttaatac 439 |||||||||||| | |||||||||||||| |||||| ||||||||||||||||| Sbjct: 35108 aacccattcttttgtttttttagctcactggccattcgctgggagtttcgggcttaatac 35167 Query: 440 cgatattttagcaacaaatctaataaatctaactgtagtggttggtgttttgannnnnnn 499 |||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 35168 cgatattttagcaacaaatctaataaatctaactgtagtggttggtgtattgattttttt 35227 Query: 500 nggaaagggagtgtgtgcgagttgtctatttcaagaatagattggatctatccggctgca 559 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 35228 tggaaagggagtgtgtgcgagttgtctatttcaagaatagattggatctatccggctgca 35287 Query: 560 ctttagaatattttttagta-tttttcggataaataagaaaagggtgcacgatctcgacg 618 |||||||||| ||||||||| ||||| |||||||||||||| ||||||||||||||||| Sbjct: 35288 ctttagaata-tttttagtattttttttgataaataagaaaa-ggtgcacgatctcgacg 35345 Query: 619 aattacttctgaataaattcagaaatcatatggaagaaccatagcatttcgcgactcatt 678 |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 35346 aattacttctgaataacttcagaaatcatatggaagaaccatagcatttcgcgattcatt 35405 Query: 679 ggtaa 683 ||||| Sbjct: 35406 ggtaa 35410
>gb|AY928077.1| Zea mays cultivar B73 chloroplast, complete genome Length = 140454 Score = 767 bits (387), Expect = 0.0 Identities = 549/605 (90%), Gaps = 9/605 (1%) Strand = Plus / Plus Query: 81 gaagggctgagttgagtatgattaatttagaagatatgctcgccttcttatttcccgtcc 140 |||||||||| ||||| ||||| |||||||| |||||||||||| |||| ||||||||| Sbjct: 34811 gaagggctgatttgagcatgatcaatttagaggatatgctcgccctcttccttcccgtcc 34870 Query: 141 ttagtttaggaaagtggaaagt-tttttccttttattttaggaattttgggaacggaaca 199 ||||||||||| |||||||||| ||||||||||||||||||||||||||||||| | Sbjct: 34871 ttagtttaggacagtggaaagtatttttccttttattttaggaattttgggaac-----a 34925 Query: 200 tttcaacaaaggaagcctttcaccggtcaaacaagacctaagacttaatctaaaagaaat 259 ||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||| Sbjct: 34926 tttcaacaaaggagatctttcacaggtcaaacgagacctaagacttaatctaaaagaaat 34985 Query: 260 tactagattgaatctatttgcattnnnnnnnccgatcaaaaaagggcgagcgaagtaagt 319 || ||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct: 34986 tattagattgaatctatttgcattaaaaaaaccgatcaaaaaaggacgagcgaagtaagt 35045 Query: 320 gatcgaaaaactttgttctttgttcgtcctatctataagaggagagcatatgaaaaatgt 379 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 35046 aatcgaaaaactttcttctttgttcgtcctatctataagaggagagcatatgaaaaatgt 35105 Query: 380 aacccattctttcgnnnnnnnagctcactggccatccgctggcagtttcgggcttaatac 439 |||||||||||| | |||||||||||||| |||||| ||||||||||||||||| Sbjct: 35106 aacccattcttttgtttttttagctcactggccattcgctgggagtttcgggcttaatac 35165 Query: 440 cgatattttagcaacaaatctaataaatctaactgtagtggttggtgttttgannnnnnn 499 |||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 35166 cgatattttagcaacaaatctaataaatctaactgtagtggttggtgtattgattttttt 35225 Query: 500 nggaaagggagtgtgtgcgagttgtctatttcaagaatagattggatctatccggctgca 559 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 35226 tggaaagggagtgtgtgcgagttgtctatttcaagaatagattggatctatccggctgca 35285 Query: 560 ctttagaatattttttagta-tttttcggataaataagaaaagggtgcacgatctcgacg 618 |||||||||| ||||||||| ||||| |||||||||||||| ||||||||||||||||| Sbjct: 35286 ctttagaata-tttttagtattttttttgataaataagaaaa-ggtgcacgatctcgacg 35343 Query: 619 aattacttctgaataaattcagaaatcatatggaagaaccatagcatttcgcgactcatt 678 |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 35344 aattacttctgaataacttcagaaatcatatggaagaaccatagcatttcgcgattcatt 35403 Query: 679 ggtaa 683 ||||| Sbjct: 35404 ggtaa 35408
>gb|DQ490953.1| Zea mays subsp. mays genotype CMS-T mitochondrion, complete genome Length = 535825 Score = 763 bits (385), Expect = 0.0 Identities = 549/606 (90%), Gaps = 10/606 (1%) Strand = Plus / Minus Query: 81 gaagggctgagttgagtatgattaatttagaagatatgctcgccttcttatttcccgtcc 140 |||||||||| ||||| ||||| |||||||| |||||||||||| |||| ||||||||| Sbjct: 61513 gaagggctgatttgagcatgatcaatttagaggatatgctcgccctcttccttcccgtcc 61454 Query: 141 ttagtttaggaaagtggaaagt-tttttccttttattttaggaattttgggaacggaaca 199 ||||||||||| |||||||||| ||||||||||||||||||||||||||||||| | Sbjct: 61453 ttagtttaggacagtggaaagtatttttccttttattttaggaattttgggaac-----a 61399 Query: 200 tttcaacaaaggaagcctttcaccggtcaaacaagacctaagacttaatctaaaagaaat 259 ||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||| Sbjct: 61398 tttcaacaaaggagatctttcacaggtcaaacgagacctaagacttaatctaaaagaaat 61339 Query: 260 tactagattgaatctatttgcattnnnnnnnccgatcaaaaaagggcgagcgaagtaagt 319 || ||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct: 61338 tattagattgaatctatttgcattaaaaaaaccgatcaaaaaaggacgagcgaagtaagt 61279 Query: 320 gatcgaaaaactttgttctttgttcgtcctatctataagaggagagcatatgaaaaatgt 379 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61278 aatcgaaaaactttcttctttgttcgtcctatctataagaggagagcatatgaaaaatgt 61219 Query: 380 aacccattctttcgnnnnnnnagctcactggccatccgctggcagtttcgggcttaatac 439 |||||||||||| | |||||||||||||| |||||| ||||||||||||||||| Sbjct: 61218 aacccattcttttgtttttttagctcactggccattcgctgggagtttcgggcttaatac 61159 Query: 440 cgatattttagcaacaaatctaataaatctaactgtagtggttggtgttttgannnnnnn 499 |||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 61158 cgatattttagcaacaaatctaataaatctaactgtagtggttggtgtattgattttttt 61099 Query: 500 nggaaagggagtgtgtgcgagttgtctatttcaagaatagattggatctatccggctgca 559 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61098 tggaaagggagtgtgtgcgagttgtctatttcaagaatagattggatctatccggctgca 61039 Query: 560 ctttagaatattttttagta--tttttcggataaataagaaaagggtgcacgatctcgac 617 |||||||||| ||||||||| ||||| |||||||||||||| |||||||||||||||| Sbjct: 61038 ctttagaata-tttttagtatttttttttgataaataagaaaa-ggtgcacgatctcgac 60981 Query: 618 gaattacttctgaataaattcagaaatcatatggaagaaccatagcatttcgcgactcat 677 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| Sbjct: 60980 gaattacttctgaataacttcagaaatcatatggaagaaccatagcatttcgcgattcat 60921 Query: 678 tggtaa 683 |||||| Sbjct: 60920 tggtaa 60915 Score = 40.1 bits (20), Expect = 9.3 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Minus Query: 1 aatacttta-tttaatttactcctatttatta 31 ||||||||| |||| ||||||||||||||||| Sbjct: 61616 aatactttactttactttactcctatttatta 61585
>gb|BT024124.1| Zea mays clone EL01N0450D02 mRNA sequence Length = 1622 Score = 753 bits (380), Expect = 0.0 Identities = 549/606 (90%), Gaps = 10/606 (1%) Strand = Plus / Plus Query: 81 gaagggctgagttgagtatgattaatttagaagatatgctcgccttcttatttcccgtcc 140 |||||||||| ||||| ||||| |||||||| |||||||||||| |||| ||||||||| Sbjct: 453 gaagggctgatttgagcatgatcaatttagaggatatgctcgccctcttccttcccgtcc 512 Query: 141 ttagtttaggaaagtggaaagt-tttttccttttattttaggaattttgggaacggaaca 199 ||||||||||| |||||||||| ||||||||||||||||||||||||||||||| | Sbjct: 513 ttagtttaggacagtggaaagtatttttccttttattttaggaattttgggaac-----a 567 Query: 200 tttcaacaaaggaagcctttcaccggtcaaacaagacctaagacttaatctaaaagaaat 259 ||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||| Sbjct: 568 tttcaacaaaggagatctttcacaggtcaaacgagacctaagacttaatctaaaagaaat 627 Query: 260 tactagattgaatctatttgcattnnnnnnnccgatcaaaaaagggcgagcgaagtaagt 319 || ||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct: 628 tattagattgaatctatttgcattaaaaaaaccgatcaaaaaaggacgagcgaagtaagt 687 Query: 320 gatcgaaaaactttgttctttgttcgtcctatctataagaggagagcatatgaaaaatgt 379 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 688 aatcgaaaaactttcttctttgttcgtcctatctataagaggagagcatatgaaaaatgt 747 Query: 380 aacccattctttcgnnnnnnnagctcactggccatccgctggcagtttcgggcttaatac 439 |||||||||||| | |||||||||||||| |||||| ||||||||||||||||| Sbjct: 748 aacccattcttttgtttttttagctcactggccattcgctgggagtttcgggcttaatac 807 Query: 440 cgatattttagcaacaaatctaataaatctaactgtagtggttggtgttttga-nnnnnn 498 |||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 808 cgatattttagcaacaaatctaataaatctaactgtagtggttggtgtattgattttttt 867 Query: 499 nnggaaagggagtgtgtgcgagttgtctatttcaagaatagattggatctatccggctgc 558 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 868 ttggaaagggagtgtgtgcgagttgtctatttcaagaatagattggatctatccggctgc 927 Query: 559 actttagaatattttttagta-tttttcggataaataagaaaagggtgcacgatctcgac 617 ||||||||||| ||||||||| ||||| |||||||||||||| |||||||||||||||| Sbjct: 928 actttagaata-tttttagtattttttttgataaataagaaaa-ggtgcacgatctcgac 985 Query: 618 gaattacttctgaataaattcagaaatcatatggaagaaccatagcatttcgcgactcat 677 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| Sbjct: 986 gaattacttctgaataacttcagaaatcatatggaagaaccatagcatttcgcgattcat 1045 Query: 678 tggtaa 683 |||||| Sbjct: 1046 tggtaa 1051
>gb|AY522330.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare chloroplast, complete genome Length = 134551 Score = 620 bits (313), Expect = e-174 Identities = 364/386 (94%) Strand = Plus / Plus Query: 298 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 32671 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 32730 Query: 358 gaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcactggccatccg 417 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 32731 gaggagagcatatgaaaaatgtaacccattctttcgtttttttagctcactggccatccg 32790 Query: 418 ctggcagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtag 477 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 32791 ctgggagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtag 32850 Query: 478 tggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctatttcaagaat 537 |||||||||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct: 32851 tggttggtgtattgatttattttggaaagggagtgtgtgcgagttgtctatttcaagaat 32910 Query: 538 agattggatctatccggctgcactttagaatattttttagtatttttcggataaataaga 597 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 32911 agattggatctatccggctgcactttagaatattttttagtatttttcgaataaataaga 32970 Query: 598 aaagggtgcacgatctcgacgaattacttctgaataaattcagaaatcatatggaagaac 657 ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| Sbjct: 32971 aaagggtgcacgatctcgacgaattacttctgaataaatgcagaaatcatatgaaagaac 33030 Query: 658 catagcatttcgcgactcattggtaa 683 |||||||||||||||| |||||||| Sbjct: 33031 catagcatttcgcgacctattggtaa 33056 Score = 186 bits (94), Expect = 6e-44 Identities = 170/194 (87%), Gaps = 6/194 (3%) Strand = Plus / Plus Query: 86 gctgagttgagtatgattaatttagaagatatgctcgccttcttatttcccgtccttagt 145 ||||| ||||| ||||| |||||||| |||||| ||||| |||| |||||| |||| || Sbjct: 32449 gctgatttgaggatgatcaatttagaggatatgttcgccgtcttgcttcccgccctttgt 32508 Query: 146 ttaggaaagtggaaagt-tttttccttttattttaggaattttgggaacggaacatttca 204 ||||| |||||||||| ||||||||||||||||||||||||||||||| |||||| Sbjct: 32509 ttagggcagtggaaagtatttttccttttattttaggaattttgggaac-----atttca 32563 Query: 205 acaaaggaagcctttcaccggtcaaacaagacctaagacttaatctaaaagaaattacta 264 |||||||| | ||||||| |||||||| ||| |||||||||||||||||||||||||||| Sbjct: 32564 acaaaggaggtctttcacaggtcaaacgagatctaagacttaatctaaaagaaattacta 32623 Query: 265 gattgaatctattt 278 ||||||||||||| Sbjct: 32624 aattgaatctattt 32637
>gb|AY522331.1| Oryza sativa (japonica cultivar-group) isolate PA64S chloroplast, complete genome Length = 134551 Score = 620 bits (313), Expect = e-174 Identities = 364/386 (94%) Strand = Plus / Plus Query: 298 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 32671 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 32730 Query: 358 gaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcactggccatccg 417 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 32731 gaggagagcatatgaaaaatgtaacccattctttcgtttttttagctcactggccatccg 32790 Query: 418 ctggcagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtag 477 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 32791 ctgggagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtag 32850 Query: 478 tggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctatttcaagaat 537 |||||||||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct: 32851 tggttggtgtattgatttattttggaaagggagtgtgtgcgagttgtctatttcaagaat 32910 Query: 538 agattggatctatccggctgcactttagaatattttttagtatttttcggataaataaga 597 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 32911 agattggatctatccggctgcactttagaatattttttagtatttttcgaataaataaga 32970 Query: 598 aaagggtgcacgatctcgacgaattacttctgaataaattcagaaatcatatggaagaac 657 ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| Sbjct: 32971 aaagggtgcacgatctcgacgaattacttctgaataaatgcagaaatcatatgaaagaac 33030 Query: 658 catagcatttcgcgactcattggtaa 683 |||||||||||||||| |||||||| Sbjct: 33031 catagcatttcgcgacctattggtaa 33056 Score = 186 bits (94), Expect = 6e-44 Identities = 170/194 (87%), Gaps = 6/194 (3%) Strand = Plus / Plus Query: 86 gctgagttgagtatgattaatttagaagatatgctcgccttcttatttcccgtccttagt 145 ||||| ||||| ||||| |||||||| |||||| ||||| |||| |||||| |||| || Sbjct: 32449 gctgatttgaggatgatcaatttagaggatatgttcgccgtcttgcttcccgccctttgt 32508 Query: 146 ttaggaaagtggaaagt-tttttccttttattttaggaattttgggaacggaacatttca 204 ||||| |||||||||| ||||||||||||||||||||||||||||||| |||||| Sbjct: 32509 ttagggcagtggaaagtatttttccttttattttaggaattttgggaac-----atttca 32563 Query: 205 acaaaggaagcctttcaccggtcaaacaagacctaagacttaatctaaaagaaattacta 264 |||||||| | ||||||| |||||||| ||| |||||||||||||||||||||||||||| Sbjct: 32564 acaaaggaggtctttcacaggtcaaacgagatctaagacttaatctaaaagaaattacta 32623 Query: 265 gattgaatctattt 278 ||||||||||||| Sbjct: 32624 aattgaatctattt 32637
>gb|AY522329.1| Oryza sativa (indica cultivar-group) isolate 93-11 chloroplast, complete genome Length = 134496 Score = 620 bits (313), Expect = e-174 Identities = 364/386 (94%) Strand = Plus / Plus Query: 298 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 32629 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 32688 Query: 358 gaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcactggccatccg 417 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 32689 gaggagagcatatgaaaaatgtaacccattctttcgtttttttagctcactggccatccg 32748 Query: 418 ctggcagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtag 477 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 32749 ctgggagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtag 32808 Query: 478 tggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctatttcaagaat 537 |||||||||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct: 32809 tggttggtgtattgatttattttggaaagggagtgtgtgcgagttgtctatttcaagaat 32868 Query: 538 agattggatctatccggctgcactttagaatattttttagtatttttcggataaataaga 597 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 32869 agattggatctatccggctgcactttagaatattttttagtatttttcgaataaataaga 32928 Query: 598 aaagggtgcacgatctcgacgaattacttctgaataaattcagaaatcatatggaagaac 657 ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| Sbjct: 32929 aaagggtgcacgatctcgacgaattacttctgaataaatgcagaaatcatatgaaagaac 32988 Query: 658 catagcatttcgcgactcattggtaa 683 |||||||||||||||| |||||||| Sbjct: 32989 catagcatttcgcgacctattggtaa 33014 Score = 186 bits (94), Expect = 6e-44 Identities = 170/194 (87%), Gaps = 6/194 (3%) Strand = Plus / Plus Query: 86 gctgagttgagtatgattaatttagaagatatgctcgccttcttatttcccgtccttagt 145 ||||| ||||| ||||| |||||||| |||||| ||||| |||| |||||| |||| || Sbjct: 32407 gctgatttgaggatgatcaatttagaggatatgttcgccgtcttgcttcccgccctttgt 32466 Query: 146 ttaggaaagtggaaagt-tttttccttttattttaggaattttgggaacggaacatttca 204 ||||| |||||||||| ||||||||||||||||||||||||||||||| |||||| Sbjct: 32467 ttagggcagtggaaagtatttttccttttattttaggaattttgggaac-----atttca 32521 Query: 205 acaaaggaagcctttcaccggtcaaacaagacctaagacttaatctaaaagaaattacta 264 |||||||| | ||||||| |||||||| ||| |||||||||||||||||||||||||||| Sbjct: 32522 acaaaggaggtctttcacaggtcaaacgagatctaagacttaatctaaaagaaattacta 32581 Query: 265 gattgaatctattt 278 ||||||||||||| Sbjct: 32582 aattgaatctattt 32595
>gb|AC091680.7| Oryza sativa chromosome 10 BAC OSJNBa0034L04 genomic sequence, complete sequence Length = 148611 Score = 620 bits (313), Expect = e-174 Identities = 364/386 (94%) Strand = Plus / Plus Query: 298 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 146260 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 146319 Query: 358 gaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcactggccatccg 417 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 146320 gaggagagcatatgaaaaatgtaacccattctttcgtttttttagctcactggccatccg 146379 Query: 418 ctggcagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtag 477 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 146380 ctgggagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtag 146439 Query: 478 tggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctatttcaagaat 537 |||||||||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct: 146440 tggttggtgtattgatttattttggaaagggagtgtgtgcgagttgtctatttcaagaat 146499 Query: 538 agattggatctatccggctgcactttagaatattttttagtatttttcggataaataaga 597 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 146500 agattggatctatccggctgcactttagaatattttttagtatttttcgaataaataaga 146559 Query: 598 aaagggtgcacgatctcgacgaattacttctgaataaattcagaaatcatatggaagaac 657 ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| Sbjct: 146560 aaagggtgcacgatctcgacgaattacttctgaataaatgcagaaatcatatgaaagaac 146619 Query: 658 catagcatttcgcgactcattggtaa 683 |||||||||||||||| |||||||| Sbjct: 146620 catagcatttcgcgacctattggtaa 146645 Score = 186 bits (94), Expect = 6e-44 Identities = 170/194 (87%), Gaps = 6/194 (3%) Strand = Plus / Plus Query: 86 gctgagttgagtatgattaatttagaagatatgctcgccttcttatttcccgtccttagt 145 ||||| ||||| ||||| |||||||| |||||| ||||| |||| |||||| |||| || Sbjct: 146038 gctgatttgaggatgatcaatttagaggatatgttcgccgtcttgcttcccgccctttgt 146097 Query: 146 ttaggaaagtggaaagt-tttttccttttattttaggaattttgggaacggaacatttca 204 ||||| |||||||||| ||||||||||||||||||||||||||||||| |||||| Sbjct: 146098 ttagggcagtggaaagtatttttccttttattttaggaattttgggaac-----atttca 146152 Query: 205 acaaaggaagcctttcaccggtcaaacaagacctaagacttaatctaaaagaaattacta 264 |||||||| | ||||||| |||||||| ||| |||||||||||||||||||||||||||| Sbjct: 146153 acaaaggaggtctttcacaggtcaaacgagatctaagacttaatctaaaagaaattacta 146212 Query: 265 gattgaatctattt 278 ||||||||||||| Sbjct: 146213 aattgaatctattt 146226
>emb|BX569685.1|OSJN00291 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0061C08, complete sequence Length = 145980 Score = 620 bits (313), Expect = e-174 Identities = 364/386 (94%) Strand = Plus / Plus Query: 298 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 37954 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 38013 Query: 358 gaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcactggccatccg 417 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 38014 gaggagagcatatgaaaaatgtaacccattctttcgtttttttagctcactggccatccg 38073 Query: 418 ctggcagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtag 477 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 38074 ctgggagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtag 38133 Query: 478 tggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctatttcaagaat 537 |||||||||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct: 38134 tggttggtgtattgatttattttggaaagggagtgtgtgcgagttgtctatttcaagaat 38193 Query: 538 agattggatctatccggctgcactttagaatattttttagtatttttcggataaataaga 597 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 38194 agattggatctatccggctgcactttagaatattttttagtatttttcgaataaataaga 38253 Query: 598 aaagggtgcacgatctcgacgaattacttctgaataaattcagaaatcatatggaagaac 657 ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| Sbjct: 38254 aaagggtgcacgatctcgacgaattacttctgaataaatgcagaaatcatatgaaagaac 38313 Query: 658 catagcatttcgcgactcattggtaa 683 |||||||||||||||| |||||||| Sbjct: 38314 catagcatttcgcgacctattggtaa 38339 Score = 186 bits (94), Expect = 6e-44 Identities = 170/194 (87%), Gaps = 6/194 (3%) Strand = Plus / Plus Query: 86 gctgagttgagtatgattaatttagaagatatgctcgccttcttatttcccgtccttagt 145 ||||| ||||| ||||| |||||||| |||||| ||||| |||| |||||| |||| || Sbjct: 37732 gctgatttgaggatgatcaatttagaggatatgttcgccgtcttgcttcccgccctttgt 37791 Query: 146 ttaggaaagtggaaagt-tttttccttttattttaggaattttgggaacggaacatttca 204 ||||| |||||||||| ||||||||||||||||||||||||||||||| |||||| Sbjct: 37792 ttagggcagtggaaagtatttttccttttattttaggaattttgggaac-----atttca 37846 Query: 205 acaaaggaagcctttcaccggtcaaacaagacctaagacttaatctaaaagaaattacta 264 |||||||| | ||||||| |||||||| ||| |||||||||||||||||||||||||||| Sbjct: 37847 acaaaggaggtctttcacaggtcaaacgagatctaagacttaatctaaaagaaattacta 37906 Query: 265 gattgaatctattt 278 ||||||||||||| Sbjct: 37907 aattgaatctattt 37920
>emb|AL731605.3|OSJN00246 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0042F21, complete sequence Length = 167113 Score = 620 bits (313), Expect = e-174 Identities = 364/386 (94%) Strand = Plus / Plus Query: 298 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 164762 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 164821 Query: 358 gaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcactggccatccg 417 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 164822 gaggagagcatatgaaaaatgtaacccattctttcgtttttttagctcactggccatccg 164881 Query: 418 ctggcagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtag 477 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 164882 ctgggagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtag 164941 Query: 478 tggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctatttcaagaat 537 |||||||||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct: 164942 tggttggtgtattgatttattttggaaagggagtgtgtgcgagttgtctatttcaagaat 165001 Query: 538 agattggatctatccggctgcactttagaatattttttagtatttttcggataaataaga 597 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 165002 agattggatctatccggctgcactttagaatattttttagtatttttcgaataaataaga 165061 Query: 598 aaagggtgcacgatctcgacgaattacttctgaataaattcagaaatcatatggaagaac 657 ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| Sbjct: 165062 aaagggtgcacgatctcgacgaattacttctgaataaatgcagaaatcatatgaaagaac 165121 Query: 658 catagcatttcgcgactcattggtaa 683 |||||||||||||||| |||||||| Sbjct: 165122 catagcatttcgcgacctattggtaa 165147 Score = 186 bits (94), Expect = 6e-44 Identities = 170/194 (87%), Gaps = 6/194 (3%) Strand = Plus / Plus Query: 86 gctgagttgagtatgattaatttagaagatatgctcgccttcttatttcccgtccttagt 145 ||||| ||||| ||||| |||||||| |||||| ||||| |||| |||||| |||| || Sbjct: 164540 gctgatttgaggatgatcaatttagaggatatgttcgccgtcttgcttcccgccctttgt 164599 Query: 146 ttaggaaagtggaaagt-tttttccttttattttaggaattttgggaacggaacatttca 204 ||||| |||||||||| ||||||||||||||||||||||||||||||| |||||| Sbjct: 164600 ttagggcagtggaaagtatttttccttttattttaggaattttgggaac-----atttca 164654 Query: 205 acaaaggaagcctttcaccggtcaaacaagacctaagacttaatctaaaagaaattacta 264 |||||||| | ||||||| |||||||| ||| |||||||||||||||||||||||||||| Sbjct: 164655 acaaaggaggtctttcacaggtcaaacgagatctaagacttaatctaaaagaaattacta 164714 Query: 265 gattgaatctattt 278 ||||||||||||| Sbjct: 164715 aattgaatctattt 164728
>gb|AC122148.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAb0075K12, complete sequence Length = 125936 Score = 620 bits (313), Expect = e-174 Identities = 364/386 (94%) Strand = Plus / Plus Query: 298 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 30918 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 30977 Query: 358 gaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcactggccatccg 417 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 30978 gaggagagcatatgaaaaatgtaacccattctttcgtttttttagctcactggccatccg 31037 Query: 418 ctggcagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtag 477 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 31038 ctgggagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtag 31097 Query: 478 tggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctatttcaagaat 537 |||||||||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct: 31098 tggttggtgtattgatttattttggaaagggagtgtgtgcgagttgtctatttcaagaat 31157 Query: 538 agattggatctatccggctgcactttagaatattttttagtatttttcggataaataaga 597 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 31158 agattggatctatccggctgcactttagaatattttttagtatttttcgaataaataaga 31217 Query: 598 aaagggtgcacgatctcgacgaattacttctgaataaattcagaaatcatatggaagaac 657 ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| Sbjct: 31218 aaagggtgcacgatctcgacgaattacttctgaataaatgcagaaatcatatgaaagaac 31277 Query: 658 catagcatttcgcgactcattggtaa 683 |||||||||||||||| |||||||| Sbjct: 31278 catagcatttcgcgacctattggtaa 31303 Score = 186 bits (94), Expect = 6e-44 Identities = 170/194 (87%), Gaps = 6/194 (3%) Strand = Plus / Plus Query: 86 gctgagttgagtatgattaatttagaagatatgctcgccttcttatttcccgtccttagt 145 ||||| ||||| ||||| |||||||| |||||| ||||| |||| |||||| |||| || Sbjct: 30696 gctgatttgaggatgatcaatttagaggatatgttcgccgtcttgcttcccgccctttgt 30755 Query: 146 ttaggaaagtggaaagt-tttttccttttattttaggaattttgggaacggaacatttca 204 ||||| |||||||||| ||||||||||||||||||||||||||||||| |||||| Sbjct: 30756 ttagggcagtggaaagtatttttccttttattttaggaattttgggaac-----atttca 30810 Query: 205 acaaaggaagcctttcaccggtcaaacaagacctaagacttaatctaaaagaaattacta 264 |||||||| | ||||||| |||||||| ||| |||||||||||||||||||||||||||| Sbjct: 30811 acaaaggaggtctttcacaggtcaaacgagatctaagacttaatctaaaagaaattacta 30870 Query: 265 gattgaatctattt 278 ||||||||||||| Sbjct: 30871 aattgaatctattt 30884
>gb|AC092750.2| Oryza sativa (japonica cultivar-group) cultivar Nipponbare from chromosome 10, complete sequence Length = 134933 Score = 620 bits (313), Expect = e-174 Identities = 364/386 (94%) Strand = Plus / Plus Query: 298 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 105851 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 105910 Query: 358 gaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcactggccatccg 417 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 105911 gaggagagcatatgaaaaatgtaacccattctttcgtttttttagctcactggccatccg 105970 Query: 418 ctggcagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtag 477 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 105971 ctgggagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtag 106030 Query: 478 tggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctatttcaagaat 537 |||||||||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct: 106031 tggttggtgtattgatttattttggaaagggagtgtgtgcgagttgtctatttcaagaat 106090 Query: 538 agattggatctatccggctgcactttagaatattttttagtatttttcggataaataaga 597 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 106091 agattggatctatccggctgcactttagaatattttttagtatttttcgaataaataaga 106150 Query: 598 aaagggtgcacgatctcgacgaattacttctgaataaattcagaaatcatatggaagaac 657 ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| Sbjct: 106151 aaagggtgcacgatctcgacgaattacttctgaataaatgcagaaatcatatgaaagaac 106210 Query: 658 catagcatttcgcgactcattggtaa 683 |||||||||||||||| |||||||| Sbjct: 106211 catagcatttcgcgacctattggtaa 106236 Score = 186 bits (94), Expect = 6e-44 Identities = 170/194 (87%), Gaps = 6/194 (3%) Strand = Plus / Plus Query: 86 gctgagttgagtatgattaatttagaagatatgctcgccttcttatttcccgtccttagt 145 ||||| ||||| ||||| |||||||| |||||| ||||| |||| |||||| |||| || Sbjct: 105629 gctgatttgaggatgatcaatttagaggatatgttcgccgtcttgcttcccgccctttgt 105688 Query: 146 ttaggaaagtggaaagt-tttttccttttattttaggaattttgggaacggaacatttca 204 ||||| |||||||||| ||||||||||||||||||||||||||||||| |||||| Sbjct: 105689 ttagggcagtggaaagtatttttccttttattttaggaattttgggaac-----atttca 105743 Query: 205 acaaaggaagcctttcaccggtcaaacaagacctaagacttaatctaaaagaaattacta 264 |||||||| | ||||||| |||||||| ||| |||||||||||||||||||||||||||| Sbjct: 105744 acaaaggaggtctttcacaggtcaaacgagatctaagacttaatctaaaagaaattacta 105803 Query: 265 gattgaatctattt 278 ||||||||||||| Sbjct: 105804 aattgaatctattt 105817
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 620 bits (313), Expect = e-174 Identities = 364/386 (94%) Strand = Plus / Plus Query: 298 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9080028 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 9080087 Query: 358 gaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcactggccatccg 417 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 9080088 gaggagagcatatgaaaaatgtaacccattctttcgtttttttagctcactggccatccg 9080147 Query: 418 ctggcagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtag 477 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9080148 ctgggagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtag 9080207 Query: 478 tggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctatttcaagaat 537 |||||||||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct: 9080208 tggttggtgtattgatttattttggaaagggagtgtgtgcgagttgtctatttcaagaat 9080267 Query: 538 agattggatctatccggctgcactttagaatattttttagtatttttcggataaataaga 597 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 9080268 agattggatctatccggctgcactttagaatattttttagtatttttcgaataaataaga 9080327 Query: 598 aaagggtgcacgatctcgacgaattacttctgaataaattcagaaatcatatggaagaac 657 ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| Sbjct: 9080328 aaagggtgcacgatctcgacgaattacttctgaataaatgcagaaatcatatgaaagaac 9080387 Query: 658 catagcatttcgcgactcattggtaa 683 |||||||||||||||| |||||||| Sbjct: 9080388 catagcatttcgcgacctattggtaa 9080413 Score = 186 bits (94), Expect = 6e-44 Identities = 170/194 (87%), Gaps = 6/194 (3%) Strand = Plus / Plus Query: 86 gctgagttgagtatgattaatttagaagatatgctcgccttcttatttcccgtccttagt 145 ||||| ||||| ||||| |||||||| |||||| ||||| |||| |||||| |||| || Sbjct: 9079806 gctgatttgaggatgatcaatttagaggatatgttcgccgtcttgcttcccgccctttgt 9079865 Query: 146 ttaggaaagtggaaagt-tttttccttttattttaggaattttgggaacggaacatttca 204 ||||| |||||||||| ||||||||||||||||||||||||||||||| |||||| Sbjct: 9079866 ttagggcagtggaaagtatttttccttttattttaggaattttgggaac-----atttca 9079920 Query: 205 acaaaggaagcctttcaccggtcaaacaagacctaagacttaatctaaaagaaattacta 264 |||||||| | ||||||| |||||||| ||| |||||||||||||||||||||||||||| Sbjct: 9079921 acaaaggaggtctttcacaggtcaaacgagatctaagacttaatctaaaagaaattacta 9079980 Query: 265 gattgaatctattt 278 ||||||||||||| Sbjct: 9079981 aattgaatctattt 9079994 Score = 61.9 bits (31), Expect = 3e-06 Identities = 31/31 (100%) Strand = Plus / Plus Query: 605 gcacgatctcgacgaattacttctgaataaa 635 ||||||||||||||||||||||||||||||| Sbjct: 28477915 gcacgatctcgacgaattacttctgaataaa 28477945
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 620 bits (313), Expect = e-174 Identities = 364/386 (94%) Strand = Plus / Minus Query: 298 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 19961930 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 19961871 Query: 358 gaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcactggccatccg 417 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 19961870 gaggagagcatatgaaaaatgtaacccattctttcgtttttttagctcactggccatccg 19961811 Query: 418 ctggcagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtag 477 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 19961810 ctgggagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtag 19961751 Query: 478 tggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctatttcaagaat 537 |||||||||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct: 19961750 tggttggtgtattgatttattttggaaagggagtgtgtgcgagttgtctatttcaagaat 19961691 Query: 538 agattggatctatccggctgcactttagaatattttttagtatttttcggataaataaga 597 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 19961690 agattggatctatccggctgcactttagaatattttttagtatttttcgaataaataaga 19961631 Query: 598 aaagggtgcacgatctcgacgaattacttctgaataaattcagaaatcatatggaagaac 657 ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| Sbjct: 19961630 aaagggtgcacgatctcgacgaattacttctgaataaatgcagaaatcatatgaaagaac 19961571 Query: 658 catagcatttcgcgactcattggtaa 683 |||||||||||||||| |||||||| Sbjct: 19961570 catagcatttcgcgacctattggtaa 19961545 Score = 620 bits (313), Expect = e-174 Identities = 364/386 (94%) Strand = Plus / Plus Query: 298 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10324526 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 10324585 Query: 358 gaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcactggccatccg 417 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 10324586 gaggagagcatatgaaaaatgtaacccattctttcgtttttttagctcactggccatccg 10324645 Query: 418 ctggcagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtag 477 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10324646 ctgggagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtag 10324705 Query: 478 tggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctatttcaagaat 537 |||||||||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct: 10324706 tggttggtgtattgatttattttggaaagggagtgtgtgcgagttgtctatttcaagaat 10324765 Query: 538 agattggatctatccggctgcactttagaatattttttagtatttttcggataaataaga 597 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 10324766 agattggatctatccggctgcactttagaatattttttagtatttttcgaataaataaga 10324825 Query: 598 aaagggtgcacgatctcgacgaattacttctgaataaattcagaaatcatatggaagaac 657 ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| Sbjct: 10324826 aaagggtgcacgatctcgacgaattacttctgaataaatgcagaaatcatatgaaagaac 10324885 Query: 658 catagcatttcgcgactcattggtaa 683 |||||||||||||||| |||||||| Sbjct: 10324886 catagcatttcgcgacctattggtaa 10324911 Score = 186 bits (94), Expect = 6e-44 Identities = 170/194 (87%), Gaps = 6/194 (3%) Strand = Plus / Minus Query: 86 gctgagttgagtatgattaatttagaagatatgctcgccttcttatttcccgtccttagt 145 ||||| ||||| ||||| |||||||| |||||| ||||| |||| |||||| |||| || Sbjct: 19962152 gctgatttgaggatgatcaatttagaggatatgttcgccgtcttgcttcccgccctttgt 19962093 Query: 146 ttaggaaagtggaaagt-tttttccttttattttaggaattttgggaacggaacatttca 204 ||||| |||||||||| ||||||||||||||||||||||||||||||| |||||| Sbjct: 19962092 ttagggcagtggaaagtatttttccttttattttaggaattttgggaac-----atttca 19962038 Query: 205 acaaaggaagcctttcaccggtcaaacaagacctaagacttaatctaaaagaaattacta 264 |||||||| | ||||||| |||||||| ||| |||||||||||||||||||||||||||| Sbjct: 19962037 acaaaggaggtctttcacaggtcaaacgagatctaagacttaatctaaaagaaattacta 19961978 Query: 265 gattgaatctattt 278 ||||||||||||| Sbjct: 19961977 aattgaatctattt 19961964 Score = 186 bits (94), Expect = 6e-44 Identities = 170/194 (87%), Gaps = 6/194 (3%) Strand = Plus / Plus Query: 86 gctgagttgagtatgattaatttagaagatatgctcgccttcttatttcccgtccttagt 145 ||||| ||||| ||||| |||||||| |||||| ||||| |||| |||||| |||| || Sbjct: 10324304 gctgatttgaggatgatcaatttagaggatatgttcgccgtcttgcttcccgccctttgt 10324363 Query: 146 ttaggaaagtggaaagt-tttttccttttattttaggaattttgggaacggaacatttca 204 ||||| |||||||||| ||||||||||||||||||||||||||||||| |||||| Sbjct: 10324364 ttagggcagtggaaagtatttttccttttattttaggaattttgggaac-----atttca 10324418 Query: 205 acaaaggaagcctttcaccggtcaaacaagacctaagacttaatctaaaagaaattacta 264 |||||||| | ||||||| |||||||| ||| |||||||||||||||||||||||||||| Sbjct: 10324419 acaaaggaggtctttcacaggtcaaacgagatctaagacttaatctaaaagaaattacta 10324478 Query: 265 gattgaatctattt 278 ||||||||||||| Sbjct: 10324479 aattgaatctattt 10324492
>gb|AC074232.11| Oryza sativa chromosome 10 BAC OSJNBb0005J14 genomic sequence, complete sequence Length = 116932 Score = 620 bits (313), Expect = e-174 Identities = 364/386 (94%) Strand = Plus / Plus Query: 298 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 24113 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 24172 Query: 358 gaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcactggccatccg 417 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 24173 gaggagagcatatgaaaaatgtaacccattctttcgtttttttagctcactggccatccg 24232 Query: 418 ctggcagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtag 477 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 24233 ctgggagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtag 24292 Query: 478 tggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctatttcaagaat 537 |||||||||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct: 24293 tggttggtgtattgatttattttggaaagggagtgtgtgcgagttgtctatttcaagaat 24352 Query: 538 agattggatctatccggctgcactttagaatattttttagtatttttcggataaataaga 597 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 24353 agattggatctatccggctgcactttagaatattttttagtatttttcgaataaataaga 24412 Query: 598 aaagggtgcacgatctcgacgaattacttctgaataaattcagaaatcatatggaagaac 657 ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| Sbjct: 24413 aaagggtgcacgatctcgacgaattacttctgaataaatgcagaaatcatatgaaagaac 24472 Query: 658 catagcatttcgcgactcattggtaa 683 |||||||||||||||| |||||||| Sbjct: 24473 catagcatttcgcgacctattggtaa 24498 Score = 186 bits (94), Expect = 6e-44 Identities = 170/194 (87%), Gaps = 6/194 (3%) Strand = Plus / Plus Query: 86 gctgagttgagtatgattaatttagaagatatgctcgccttcttatttcccgtccttagt 145 ||||| ||||| ||||| |||||||| |||||| ||||| |||| |||||| |||| || Sbjct: 23891 gctgatttgaggatgatcaatttagaggatatgttcgccgtcttgcttcccgccctttgt 23950 Query: 146 ttaggaaagtggaaagt-tttttccttttattttaggaattttgggaacggaacatttca 204 ||||| |||||||||| ||||||||||||||||||||||||||||||| |||||| Sbjct: 23951 ttagggcagtggaaagtatttttccttttattttaggaattttgggaac-----atttca 24005 Query: 205 acaaaggaagcctttcaccggtcaaacaagacctaagacttaatctaaaagaaattacta 264 |||||||| | ||||||| |||||||| ||| |||||||||||||||||||||||||||| Sbjct: 24006 acaaaggaggtctttcacaggtcaaacgagatctaagacttaatctaaaagaaattacta 24065 Query: 265 gattgaatctattt 278 ||||||||||||| Sbjct: 24066 aattgaatctattt 24079
>dbj|AK121120.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023074F07, full insert sequence Length = 3220 Score = 620 bits (313), Expect = e-174 Identities = 364/386 (94%) Strand = Plus / Plus Query: 298 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2287 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 2346 Query: 358 gaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcactggccatccg 417 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 2347 gaggagagcatatgaaaaatgtaacccattctttcgtttttttagctcactggccatccg 2406 Query: 418 ctggcagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtag 477 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2407 ctgggagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtag 2466 Query: 478 tggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctatttcaagaat 537 |||||||||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct: 2467 tggttggtgtattgatttattttggaaagggagtgtgtgcgagttgtctatttcaagaat 2526 Query: 538 agattggatctatccggctgcactttagaatattttttagtatttttcggataaataaga 597 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 2527 agattggatctatccggctgcactttagaatattttttagtatttttcgaataaataaga 2586 Query: 598 aaagggtgcacgatctcgacgaattacttctgaataaattcagaaatcatatggaagaac 657 ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| Sbjct: 2587 aaagggtgcacgatctcgacgaattacttctgaataaatgcagaaatcatatgaaagaac 2646 Query: 658 catagcatttcgcgactcattggtaa 683 |||||||||||||||| |||||||| Sbjct: 2647 catagcatttcgcgacctattggtaa 2672 Score = 186 bits (94), Expect = 6e-44 Identities = 170/194 (87%), Gaps = 6/194 (3%) Strand = Plus / Plus Query: 86 gctgagttgagtatgattaatttagaagatatgctcgccttcttatttcccgtccttagt 145 ||||| ||||| ||||| |||||||| |||||| ||||| |||| |||||| |||| || Sbjct: 2065 gctgatttgaggatgatcaatttagaggatatgttcgccgtcttgcttcccgccctttgt 2124 Query: 146 ttaggaaagtggaaagt-tttttccttttattttaggaattttgggaacggaacatttca 204 ||||| |||||||||| ||||||||||||||||||||||||||||||| |||||| Sbjct: 2125 ttagggcagtggaaagtatttttccttttattttaggaattttgggaac-----atttca 2179 Query: 205 acaaaggaagcctttcaccggtcaaacaagacctaagacttaatctaaaagaaattacta 264 |||||||| | ||||||| |||||||| ||| |||||||||||||||||||||||||||| Sbjct: 2180 acaaaggaggtctttcacaggtcaaacgagatctaagacttaatctaaaagaaattacta 2239 Query: 265 gattgaatctattt 278 ||||||||||||| Sbjct: 2240 aattgaatctattt 2253
>dbj|AK110794.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-171-D06, full insert sequence Length = 1537 Score = 620 bits (313), Expect = e-174 Identities = 364/386 (94%) Strand = Plus / Plus Query: 298 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 22 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 81 Query: 358 gaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcactggccatccg 417 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 82 gaggagagcatatgaaaaatgtaacccattctttcgtttttttagctcactggccatccg 141 Query: 418 ctggcagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtag 477 |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 142 ctgggagtttcgggcttgataccgatattttagcaacaaatctaataaatctaactgtag 201 Query: 478 tggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctatttcaagaat 537 |||||||||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct: 202 tggttggtgtattgatttattttggaaagggagtgtgtgcgagttgtctatttcaagaat 261 Query: 538 agattggatctatccggctgcactttagaatattttttagtatttttcggataaataaga 597 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 262 agattggatctatccggctgcactttagaatattttttagtatttttcggataaataaga 321 Query: 598 aaagggtgcacgatctcgacgaattacttctgaataaattcagaaatcatatggaagaac 657 ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| Sbjct: 322 aaagggtgcacgatctcgacgaattacttctgaataaatgcagaaatcatatgaaagaac 381 Query: 658 catagcatttcgcgactcattggtaa 683 |||||||||||||||| |||||||| Sbjct: 382 catagcatttcgcgacctattggtaa 407
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 620 bits (313), Expect = e-174 Identities = 364/386 (94%) Strand = Plus / Minus Query: 298 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 19973206 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 19973147 Query: 358 gaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcactggccatccg 417 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 19973146 gaggagagcatatgaaaaatgtaacccattctttcgtttttttagctcactggccatccg 19973087 Query: 418 ctggcagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtag 477 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 19973086 ctgggagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtag 19973027 Query: 478 tggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctatttcaagaat 537 |||||||||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct: 19973026 tggttggtgtattgatttattttggaaagggagtgtgtgcgagttgtctatttcaagaat 19972967 Query: 538 agattggatctatccggctgcactttagaatattttttagtatttttcggataaataaga 597 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 19972966 agattggatctatccggctgcactttagaatattttttagtatttttcgaataaataaga 19972907 Query: 598 aaagggtgcacgatctcgacgaattacttctgaataaattcagaaatcatatggaagaac 657 ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| Sbjct: 19972906 aaagggtgcacgatctcgacgaattacttctgaataaatgcagaaatcatatgaaagaac 19972847 Query: 658 catagcatttcgcgactcattggtaa 683 |||||||||||||||| |||||||| Sbjct: 19972846 catagcatttcgcgacctattggtaa 19972821 Score = 620 bits (313), Expect = e-174 Identities = 364/386 (94%) Strand = Plus / Plus Query: 298 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10330565 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 10330624 Query: 358 gaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcactggccatccg 417 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 10330625 gaggagagcatatgaaaaatgtaacccattctttcgtttttttagctcactggccatccg 10330684 Query: 418 ctggcagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtag 477 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10330685 ctgggagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtag 10330744 Query: 478 tggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctatttcaagaat 537 |||||||||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct: 10330745 tggttggtgtattgatttattttggaaagggagtgtgtgcgagttgtctatttcaagaat 10330804 Query: 538 agattggatctatccggctgcactttagaatattttttagtatttttcggataaataaga 597 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 10330805 agattggatctatccggctgcactttagaatattttttagtatttttcgaataaataaga 10330864 Query: 598 aaagggtgcacgatctcgacgaattacttctgaataaattcagaaatcatatggaagaac 657 ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| Sbjct: 10330865 aaagggtgcacgatctcgacgaattacttctgaataaatgcagaaatcatatgaaagaac 10330924 Query: 658 catagcatttcgcgactcattggtaa 683 |||||||||||||||| |||||||| Sbjct: 10330925 catagcatttcgcgacctattggtaa 10330950 Score = 186 bits (94), Expect = 6e-44 Identities = 170/194 (87%), Gaps = 6/194 (3%) Strand = Plus / Minus Query: 86 gctgagttgagtatgattaatttagaagatatgctcgccttcttatttcccgtccttagt 145 ||||| ||||| ||||| |||||||| |||||| ||||| |||| |||||| |||| || Sbjct: 19973428 gctgatttgaggatgatcaatttagaggatatgttcgccgtcttgcttcccgccctttgt 19973369 Query: 146 ttaggaaagtggaaagt-tttttccttttattttaggaattttgggaacggaacatttca 204 ||||| |||||||||| ||||||||||||||||||||||||||||||| |||||| Sbjct: 19973368 ttagggcagtggaaagtatttttccttttattttaggaattttgggaac-----atttca 19973314 Query: 205 acaaaggaagcctttcaccggtcaaacaagacctaagacttaatctaaaagaaattacta 264 |||||||| | ||||||| |||||||| ||| |||||||||||||||||||||||||||| Sbjct: 19973313 acaaaggaggtctttcacaggtcaaacgagatctaagacttaatctaaaagaaattacta 19973254 Query: 265 gattgaatctattt 278 ||||||||||||| Sbjct: 19973253 aattgaatctattt 19973240 Score = 186 bits (94), Expect = 6e-44 Identities = 170/194 (87%), Gaps = 6/194 (3%) Strand = Plus / Plus Query: 86 gctgagttgagtatgattaatttagaagatatgctcgccttcttatttcccgtccttagt 145 ||||| ||||| ||||| |||||||| |||||| ||||| |||| |||||| |||| || Sbjct: 10330343 gctgatttgaggatgatcaatttagaggatatgttcgccgtcttgcttcccgccctttgt 10330402 Query: 146 ttaggaaagtggaaagt-tttttccttttattttaggaattttgggaacggaacatttca 204 ||||| |||||||||| ||||||||||||||||||||||||||||||| |||||| Sbjct: 10330403 ttagggcagtggaaagtatttttccttttattttaggaattttgggaac-----atttca 10330457 Query: 205 acaaaggaagcctttcaccggtcaaacaagacctaagacttaatctaaaagaaattacta 264 |||||||| | ||||||| |||||||| ||| |||||||||||||||||||||||||||| Sbjct: 10330458 acaaaggaggtctttcacaggtcaaacgagatctaagacttaatctaaaagaaattacta 10330517 Query: 265 gattgaatctattt 278 ||||||||||||| Sbjct: 10330518 aattgaatctattt 10330531
>dbj|AP006728.1| Oryza nivara chloroplast DNA, complete genome Length = 134494 Score = 620 bits (313), Expect = e-174 Identities = 364/386 (94%) Strand = Plus / Plus Query: 298 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 32603 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 32662 Query: 358 gaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcactggccatccg 417 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 32663 gaggagagcatatgaaaaatgtaacccattctttcgtttttttagctcactggccatccg 32722 Query: 418 ctggcagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtag 477 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 32723 ctgggagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtag 32782 Query: 478 tggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctatttcaagaat 537 |||||||||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct: 32783 tggttggtgtattgatttattttggaaagggagtgtgtgcgagttgtctatttcaagaat 32842 Query: 538 agattggatctatccggctgcactttagaatattttttagtatttttcggataaataaga 597 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 32843 agattggatctatccggctgcactttagaatattttttagtatttttcgaataaataaga 32902 Query: 598 aaagggtgcacgatctcgacgaattacttctgaataaattcagaaatcatatggaagaac 657 ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| Sbjct: 32903 aaagggtgcacgatctcgacgaattacttctgaataaatgcagaaatcatatgaaagaac 32962 Query: 658 catagcatttcgcgactcattggtaa 683 |||||||||||||||| |||||||| Sbjct: 32963 catagcatttcgcgacctattggtaa 32988 Score = 186 bits (94), Expect = 6e-44 Identities = 170/194 (87%), Gaps = 6/194 (3%) Strand = Plus / Plus Query: 86 gctgagttgagtatgattaatttagaagatatgctcgccttcttatttcccgtccttagt 145 ||||| ||||| ||||| |||||||| |||||| ||||| |||| |||||| |||| || Sbjct: 32381 gctgatttgaggatgatcaatttagaggatatgttcgccgtcttgcttcccgccctttgt 32440 Query: 146 ttaggaaagtggaaagt-tttttccttttattttaggaattttgggaacggaacatttca 204 ||||| |||||||||| ||||||||||||||||||||||||||||||| |||||| Sbjct: 32441 ttagggcagtggaaagtatttttccttttattttaggaattttgggaac-----atttca 32495 Query: 205 acaaaggaagcctttcaccggtcaaacaagacctaagacttaatctaaaagaaattacta 264 |||||||| | ||||||| |||||||| ||| |||||||||||||||||||||||||||| Sbjct: 32496 acaaaggaggtctttcacaggtcaaacgagatctaagacttaatctaaaagaaattacta 32555 Query: 265 gattgaatctattt 278 ||||||||||||| Sbjct: 32556 aattgaatctattt 32569
>emb|X15901.1|CHOSXX Oryza sativa (japonica cultivar-group) chloroplast genome Length = 134525 Score = 607 bits (306), Expect = e-170 Identities = 364/387 (94%), Gaps = 1/387 (0%) Strand = Plus / Plus Query: 298 aaaaagggcgagcgaagtaa-gtgatcgaaaaactttgttctttgttcgtcctatctata 356 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 32669 aaaaagggcgagcgaagtaaagtgatcgaaaaactttgttctttgttcgtcctatctata 32728 Query: 357 agaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcactggccatcc 416 ||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 32729 agaggagagcatatgaaaaatgtaacccattctttcgtttttttagctcactggccatcc 32788 Query: 417 gctggcagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgta 476 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 32789 gctgggagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgta 32848 Query: 477 gtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctatttcaagaa 536 ||||||||||| |||| |||||||||||||||||||||||||||||||||||| Sbjct: 32849 gtggttggtgtattgatttattttggaaagggagtgtgtgcgagttgtctatttcaagaa 32908 Query: 537 tagattggatctatccggctgcactttagaatattttttagtatttttcggataaataag 596 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 32909 tagattggatctatccggctgcactttagaatattttttagtatttttcgaataaataag 32968 Query: 597 aaaagggtgcacgatctcgacgaattacttctgaataaattcagaaatcatatggaagaa 656 |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct: 32969 aaaagggtgcacgatctcgacgaattacttctgaataaatgcagaaatcatatgaaagaa 33028 Query: 657 ccatagcatttcgcgactcattggtaa 683 ||||||||||||||||| |||||||| Sbjct: 33029 ccatagcatttcgcgacctattggtaa 33055 Score = 186 bits (94), Expect = 6e-44 Identities = 170/194 (87%), Gaps = 6/194 (3%) Strand = Plus / Plus Query: 86 gctgagttgagtatgattaatttagaagatatgctcgccttcttatttcccgtccttagt 145 ||||| ||||| ||||| |||||||| |||||| ||||| |||| |||||| |||| || Sbjct: 32447 gctgatttgaggatgatcaatttagaggatatgttcgccgtcttgcttcccgccctttgt 32506 Query: 146 ttaggaaagtggaaagt-tttttccttttattttaggaattttgggaacggaacatttca 204 ||||| |||||||||| ||||||||||||||||||||||||||||||| |||||| Sbjct: 32507 ttagggcagtggaaagtatttttccttttattttaggaattttgggaac-----atttca 32561 Query: 205 acaaaggaagcctttcaccggtcaaacaagacctaagacttaatctaaaagaaattacta 264 |||||||| | ||||||| |||||||| ||| |||||||||||||||||||||||||||| Sbjct: 32562 acaaaggaggtctttcacaggtcaaacgagatctaagacttaatctaaaagaaattacta 32621 Query: 265 gattgaatctattt 278 ||||||||||||| Sbjct: 32622 aattgaatctattt 32635
>gb|AE009947.2| Saccharum hybrid cultivar SP-80-3280 chloroplast, complete genome Length = 141182 Score = 569 bits (287), Expect = e-159 Identities = 366/395 (92%), Gaps = 3/395 (0%) Strand = Plus / Plus Query: 291 ccgatcaaaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtccta 350 |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 97153 ccgatcaaaaaaggacgagcgaagtaagtgatcgaaaaactttcttctttgttcgtccta 97212 Query: 351 tctataagaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcactgg 410 ||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 97213 tctataagaggagagcatatgaaaaatgtaacccattctttcgtttttttagctcactgg 97272 Query: 411 ccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaataaatcta 470 |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 97273 ccattcgctgggagtttcgggcttaataccgatattttagcaacaaatctaataaatcta 97332 Query: 471 actgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctattt 530 ||||||||||||||||| |||| |||||||||||||||||||||||||||||| Sbjct: 97333 actgtagtggttggtgtattgattttttttggaaagggagtgtgtgcgagttgtctattt 97392 Query: 531 caagaatagattggatctatccggctgcactttagaatattttt--tagtatttttcgga 588 |||||||||||||||||||||||||||||||||||||||||||| || | ||||| || Sbjct: 97393 caagaatagattggatctatccggctgcactttagaatatttttagtattttttttttga 97452 Query: 589 taaataagaaaagggtgcacgatctcgacgaattacttctgaataaattcagaaatcata 648 |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 97453 taaataagaaaa-ggtgcacgatctcgacgaattacttctgaataacttcagaaatcata 97511 Query: 649 tggaagaaccatagcatttcgcgactcattggtaa 683 |||||||||||||||||||||||| |||||||||| Sbjct: 97512 tggaagaaccatagcatttcgcgattcattggtaa 97546 Score = 230 bits (116), Expect = 5e-57 Identities = 183/204 (89%), Gaps = 6/204 (2%) Strand = Plus / Plus Query: 81 gaagggctgagttgagtatgattaatttagaagatatgctcgccttcttatttcccgtcc 140 |||||||||| ||||| ||||| |||||||| |||||||||||| |||| ||||||||| Sbjct: 96933 gaagggctgatttgagcatgatcaatttagaggatatgctcgccctcttccttcccgtcc 96992 Query: 141 ttagtttaggaaagtggaaagt-tttttccttttattttaggaattttgggaacggaaca 199 ||||||||||| |||||||||| ||||||||||||||||||||||||||||||| | Sbjct: 96993 ttagtttaggacagtggaaagtatttttccttttattttaggaattttgggaac-----a 97047 Query: 200 tttcaacaaaggaagcctttcaccggtcaaacaagacctaagacttaatctaaaagaaat 259 ||||||||||||| ||||||| |||||||| |||||||||| |||||||||||||||| Sbjct: 97048 tttcaacaaaggagatctttcacaggtcaaacgagacctaagatttaatctaaaagaaat 97107 Query: 260 tactagattgaatctatttgcatt 283 || ||||||||||||||||||||| Sbjct: 97108 tattagattgaatctatttgcatt 97131
>dbj|AP006714.1| Saccharum officinarum chloroplast DNA, complete genome Length = 141182 Score = 569 bits (287), Expect = e-159 Identities = 366/395 (92%), Gaps = 3/395 (0%) Strand = Plus / Plus Query: 291 ccgatcaaaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtccta 350 |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 35526 ccgatcaaaaaaggacgagcgaagtaagtgatcgaaaaactttcttctttgttcgtccta 35585 Query: 351 tctataagaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcactgg 410 ||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 35586 tctataagaggagagcatatgaaaaatgtaacccattctttcgtttttttagctcactgg 35645 Query: 411 ccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaataaatcta 470 |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 35646 ccattcgctgggagtttcgggcttaataccgatattttagcaacaaatctaataaatcta 35705 Query: 471 actgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctattt 530 ||||||||||||||||| |||| |||||||||||||||||||||||||||||| Sbjct: 35706 actgtagtggttggtgtattgattttttttggaaagggagtgtgtgcgagttgtctattt 35765 Query: 531 caagaatagattggatctatccggctgcactttagaatattttt--tagtatttttcgga 588 |||||||||||||||||||||||||||||||||||||||||||| || | ||||| || Sbjct: 35766 caagaatagattggatctatccggctgcactttagaatatttttagtattttttttttga 35825 Query: 589 taaataagaaaagggtgcacgatctcgacgaattacttctgaataaattcagaaatcata 648 |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 35826 taaataagaaaa-ggtgcacgatctcgacgaattacttctgaataacttcagaaatcata 35884 Query: 649 tggaagaaccatagcatttcgcgactcattggtaa 683 |||||||||||||||||||||||| |||||||||| Sbjct: 35885 tggaagaaccatagcatttcgcgattcattggtaa 35919 Score = 230 bits (116), Expect = 5e-57 Identities = 183/204 (89%), Gaps = 6/204 (2%) Strand = Plus / Plus Query: 81 gaagggctgagttgagtatgattaatttagaagatatgctcgccttcttatttcccgtcc 140 |||||||||| ||||| ||||| |||||||| |||||||||||| |||| ||||||||| Sbjct: 35306 gaagggctgatttgagcatgatcaatttagaggatatgctcgccctcttccttcccgtcc 35365 Query: 141 ttagtttaggaaagtggaaagt-tttttccttttattttaggaattttgggaacggaaca 199 ||||||||||| |||||||||| ||||||||||||||||||||||||||||||| | Sbjct: 35366 ttagtttaggacagtggaaagtatttttccttttattttaggaattttgggaac-----a 35420 Query: 200 tttcaacaaaggaagcctttcaccggtcaaacaagacctaagacttaatctaaaagaaat 259 ||||||||||||| ||||||| |||||||| |||||||||| |||||||||||||||| Sbjct: 35421 tttcaacaaaggagatctttcacaggtcaaacgagacctaagatttaatctaaaagaaat 35480 Query: 260 tactagattgaatctatttgcatt 283 || ||||||||||||||||||||| Sbjct: 35481 tattagattgaatctatttgcatt 35504
>emb|AJ010573.1|HVU010573 Hordeum vulgare chloroplast gene encoding ATP synthase CFO subunit I, exon 1 (partial) and exon 2 Length = 962 Score = 454 bits (229), Expect = e-124 Identities = 245/253 (96%) Strand = Plus / Plus Query: 431 gcttaataccgatattttagcaacaaatctaataaatctaactgtagtggttggtgtttt 490 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 gcttaataccgatattttagcaacaaatctaataaatctaactgtagtggttggtgtttt 60 Query: 491 gannnnnnnnggaaagggagtgtgtgcgagttgtctatttcaagaatagattggatctat 550 || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 gattttttttggaaagggagtgtgtgcgagttgtctatttcaagaatagattggatctat 120 Query: 551 ccggctgcactttagaatattttttagtatttttcggataaataagaaaagggtgcacga 610 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 ccggctgcactttagaatattttttagtatttttcggataaataagaaaagggtgcacga 180 Query: 611 tctcgacgaattacttctgaataaattcagaaatcatatggaagaaccatagcatttcgc 670 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 tctcgacgaattacttctgaataaattcagaaatcatatggaagaaccatagcatttcgc 240 Query: 671 gactcattggtaa 683 ||||||||||||| Sbjct: 241 gactcattggtaa 253
>dbj|AP006963.1| Saccharum spontaneum chloroplast gene for RNA polymerase betaII subunit, partial cds, strain: Jw385, clone: SJw-33kb Length = 381 Score = 400 bits (202), Expect = e-108 Identities = 261/281 (92%), Gaps = 3/281 (1%) Strand = Plus / Plus Query: 405 cactggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaata 464 |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 cactggccattcgctgggagtttcgggcttaataccgatattttagcaacaaatctaata 60 Query: 465 aatctaactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgt 524 ||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct: 61 aatctaactgtagtggttggtgtattgattttttttggaaagggagtgtgtgcgagttgt 120 Query: 525 ctatttcaagaatagattggatctatccggctgcactttagaatattttt--tagtattt 582 |||||||||||||||||||||||||||||||||||||||||||||||||| || | ||| Sbjct: 121 ctatttcaagaatagattggatctatccggctgcactttagaatatttttagtatttttt 180 Query: 583 ttcggataaataagaaaagggtgcacgatctcgacgaattacttctgaataaattcagaa 642 || |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| Sbjct: 181 ttttgataaataagaaaagg-tgcacgatctcgacgaattacttctgaataacttcagaa 239 Query: 643 atcatatggaagaaccatagcatttcgcgactcattggtaa 683 |||||||||||||||||||||||||||||| |||||||||| Sbjct: 240 atcatatggaagaaccatagcatttcgcgattcattggtaa 280
>dbj|AP006962.1| Saccharum spontaneum chloroplast gene for RNA polymerase betaII subunit, partial cds, strain: Glagah, clone: SGl-33kb Length = 381 Score = 400 bits (202), Expect = e-108 Identities = 261/281 (92%), Gaps = 3/281 (1%) Strand = Plus / Plus Query: 405 cactggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaata 464 |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 cactggccattcgctgggagtttcgggcttaataccgatattttagcaacaaatctaata 60 Query: 465 aatctaactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgt 524 ||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct: 61 aatctaactgtagtggttggtgtattgattttttttggaaagggagtgtgtgcgagttgt 120 Query: 525 ctatttcaagaatagattggatctatccggctgcactttagaatattttt--tagtattt 582 |||||||||||||||||||||||||||||||||||||||||||||||||| || | ||| Sbjct: 121 ctatttcaagaatagattggatctatccggctgcactttagaatatttttagtatttttt 180 Query: 583 ttcggataaataagaaaagggtgcacgatctcgacgaattacttctgaataaattcagaa 642 || |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| Sbjct: 181 ttttgataaataagaaaagg-tgcacgatctcgacgaattacttctgaataacttcagaa 239 Query: 643 atcatatggaagaaccatagcatttcgcgactcattggtaa 683 |||||||||||||||||||||||||||||| |||||||||| Sbjct: 240 atcatatggaagaaccatagcatttcgcgattcattggtaa 280
>dbj|AP006961.1| Saccharum officinarum chloroplast gene for RNA polymerase betaII subunit, partial cds, strain: Fiji40, clone: OFi-33kb Length = 381 Score = 400 bits (202), Expect = e-108 Identities = 261/281 (92%), Gaps = 3/281 (1%) Strand = Plus / Plus Query: 405 cactggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaata 464 |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 cactggccattcgctgggagtttcgggcttaataccgatattttagcaacaaatctaata 60 Query: 465 aatctaactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgt 524 ||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct: 61 aatctaactgtagtggttggtgtattgattttttttggaaagggagtgtgtgcgagttgt 120 Query: 525 ctatttcaagaatagattggatctatccggctgcactttagaatattttt--tagtattt 582 |||||||||||||||||||||||||||||||||||||||||||||||||| || | ||| Sbjct: 121 ctatttcaagaatagattggatctatccggctgcactttagaatatttttagtatttttt 180 Query: 583 ttcggataaataagaaaagggtgcacgatctcgacgaattacttctgaataaattcagaa 642 || |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| Sbjct: 181 ttttgataaataagaaaagg-tgcacgatctcgacgaattacttctgaataacttcagaa 239 Query: 643 atcatatggaagaaccatagcatttcgcgactcattggtaa 683 |||||||||||||||||||||||||||||| |||||||||| Sbjct: 240 atcatatggaagaaccatagcatttcgcgattcattggtaa 280
>dbj|AP006960.1| Saccharum officinarum chloroplast gene for RNA polymerase betaII subunit, partial cds, strain: Badila, clone: OBa-33kb Length = 381 Score = 400 bits (202), Expect = e-108 Identities = 261/281 (92%), Gaps = 3/281 (1%) Strand = Plus / Plus Query: 405 cactggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaata 464 |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 cactggccattcgctgggagtttcgggcttaataccgatattttagcaacaaatctaata 60 Query: 465 aatctaactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgt 524 ||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct: 61 aatctaactgtagtggttggtgtattgattttttttggaaagggagtgtgtgcgagttgt 120 Query: 525 ctatttcaagaatagattggatctatccggctgcactttagaatattttt--tagtattt 582 |||||||||||||||||||||||||||||||||||||||||||||||||| || | ||| Sbjct: 121 ctatttcaagaatagattggatctatccggctgcactttagaatatttttagtatttttt 180 Query: 583 ttcggataaataagaaaagggtgcacgatctcgacgaattacttctgaataaattcagaa 642 || |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| Sbjct: 181 ttttgataaataagaaaagg-tgcacgatctcgacgaattacttctgaataacttcagaa 239 Query: 643 atcatatggaagaaccatagcatttcgcgactcattggtaa 683 |||||||||||||||||||||||||||||| |||||||||| Sbjct: 240 atcatatggaagaaccatagcatttcgcgattcattggtaa 280
>gb|AY951945.1| Triticum monococcum TmBAC 60J11 FR-Am2 locus, genomic sequence Length = 103866 Score = 387 bits (195), Expect = e-104 Identities = 238/252 (94%), Gaps = 2/252 (0%) Strand = Plus / Plus Query: 433 ttaataccgatattttagcaacaaatctaataaatctaactgtagtggttggtgttttga 492 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 40123 ttaataccgatattttagcaacaaatctaataaatttaactgtagtggttggtgttttga 40182 Query: 493 nnnnnnnnggaaagggagtgtgtgcgagttgtctatttcaagaatagattggatctatcc 552 |||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 40183 ttttttt-ggaaagggagtgtgtgtgagttgtctatttcaagaatagattggatctatcc 40241 Query: 553 ggctgcactttagaatattttttagtatttttcggataaataag-aaaagggtgcacgat 611 |||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||| Sbjct: 40242 ggctgcactttataatattttttagtatttttctgataaataagaaaaagggtgcacgat 40301 Query: 612 ctcgacgaattacttctgaataaattcagaaatcatatggaagaaccatagcatttcgcg 671 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 40302 ctcgacgaattacttctgaataaattcagaaatcatatggaagaaccatagcatttcgcg 40361 Query: 672 actcattggtaa 683 ||||||||||| Sbjct: 40362 cctcattggtaa 40373
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 367 bits (185), Expect = 3e-98 Identities = 240/261 (91%) Strand = Plus / Plus Query: 423 agtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtagtggtt 482 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 6646958 agtttcgggcttaataccaatattttagcaacaaatctaataaatctaactgtagtggtt 6647017 Query: 483 ggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctatttcaagaatagatt 542 ||||| |||| ||||| |||| ||||||||||||||||||||||||||||||| Sbjct: 6647018 ggtgtattgatttattttggaaaaggagcgtgtgcgagttgtctatttcaagaatagatt 6647077 Query: 543 ggatctatccggctgcactttagaatattttttagtatttttcggataaataagaaaagg 602 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 6647078 ggatctatccggctgcactttagaatattttttagtatttttcgaataaataagaaaagg 6647137 Query: 603 gtgcacgatctcgacgaattacttctgaataaattcagaaatcatatggaagaaccatag 662 ||||||||||||||||| |||||||||||||||| || |||||||||| || |||||||| Sbjct: 6647138 gtgcacgatctcgacgatttacttctgaataaatgcataaatcatatgaaacaaccatag 6647197 Query: 663 catttcgcgactcattggtaa 683 ||||| ||||| |||||||| Sbjct: 6647198 cattttgcgacctattggtaa 6647218
>dbj|AP004996.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0027A02 Length = 140402 Score = 367 bits (185), Expect = 3e-98 Identities = 240/261 (91%) Strand = Plus / Plus Query: 423 agtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtagtggtt 482 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 81333 agtttcgggcttaataccaatattttagcaacaaatctaataaatctaactgtagtggtt 81392 Query: 483 ggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctatttcaagaatagatt 542 ||||| |||| ||||| |||| ||||||||||||||||||||||||||||||| Sbjct: 81393 ggtgtattgatttattttggaaaaggagcgtgtgcgagttgtctatttcaagaatagatt 81452 Query: 543 ggatctatccggctgcactttagaatattttttagtatttttcggataaataagaaaagg 602 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 81453 ggatctatccggctgcactttagaatattttttagtatttttcgaataaataagaaaagg 81512 Query: 603 gtgcacgatctcgacgaattacttctgaataaattcagaaatcatatggaagaaccatag 662 ||||||||||||||||| |||||||||||||||| || |||||||||| || |||||||| Sbjct: 81513 gtgcacgatctcgacgatttacttctgaataaatgcataaatcatatgaaacaaccatag 81572 Query: 663 catttcgcgactcattggtaa 683 ||||| ||||| |||||||| Sbjct: 81573 cattttgcgacctattggtaa 81593
>gb|AC105747.4| Oryza sativa chromosome 3 BAC OSJNBb0101N11 genomic sequence, complete sequence Length = 138345 Score = 315 bits (159), Expect = 1e-82 Identities = 177/183 (96%) Strand = Plus / Plus Query: 501 ggaaagggagtgtgtgcgagttgtctatttcaagaatagattggatctatccggctgcac 560 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 18456 ggaaagggagtgtgtgcgagttgtctatttcaagaatagattggatctatccggctgcac 18515 Query: 561 tttagaatattttttagtatttttcggataaataagaaaagggtgcacgatctcgacgaa 620 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 18516 tttagaatattttttagtatttttcaaataaataagaaaagggtgcacgatctcgacgaa 18575 Query: 621 ttacttctgaataaattcagaaatcatatggaagaaccatagcatttcgcgactcattgg 680 |||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||| Sbjct: 18576 ttacttctgaataaatgcagaaatcatatgaaagaaccatagcatttcgcgacctattgg 18635 Query: 681 taa 683 ||| Sbjct: 18636 taa 18638
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 315 bits (159), Expect = 1e-82 Identities = 177/183 (96%) Strand = Plus / Plus Query: 501 ggaaagggagtgtgtgcgagttgtctatttcaagaatagattggatctatccggctgcac 560 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 27318249 ggaaagggagtgtgtgcgagttgtctatttcaagaatagattggatctatccggctgcac 27318308 Query: 561 tttagaatattttttagtatttttcggataaataagaaaagggtgcacgatctcgacgaa 620 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 27318309 tttagaatattttttagtatttttcaaataaataagaaaagggtgcacgatctcgacgaa 27318368 Query: 621 ttacttctgaataaattcagaaatcatatggaagaaccatagcatttcgcgactcattgg 680 |||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||| Sbjct: 27318369 ttacttctgaataaatgcagaaatcatatgaaagaaccatagcatttcgcgacctattgg 27318428 Query: 681 taa 683 ||| Sbjct: 27318429 taa 27318431 Score = 101 bits (51), Expect = 3e-18 Identities = 113/130 (86%), Gaps = 4/130 (3%) Strand = Plus / Plus Query: 507 ggagtgtgtgcgagttgtctatttcaagaatagattggatctatccggctgcactttaga 566 ||||||||||| | |||||||||| ||||||| ||||||||||||||||| | |||||| Sbjct: 31554443 ggagtgtgtgcaaattgtctattttaagaatatattggatctatccggctatattttaga 31554502 Query: 567 atattttttagtatttttcggataaataagaaaagggtgcacgatctcgacgaattactt 626 ||| ||| ||| ||||| |||| ||||||||||||||||||||||||||||| ||| | Sbjct: 31554503 ata--tttcagtgttttt-ggat-aataagaaaagggtgcacgatctcgacgatttattc 31554558 Query: 627 ctgaataaat 636 ||||| |||| Sbjct: 31554559 ctgaacaaat 31554568 Score = 63.9 bits (32), Expect = 6e-07 Identities = 47/52 (90%) Strand = Plus / Plus Query: 433 ttaataccgatattttagcaacaaatctaataaatctaactgtagtggttgg 484 |||||||| ||||||| | |||||||||||||||| ||||||| |||||||| Sbjct: 31554343 ttaataccaatatttttgtaacaaatctaataaatttaactgtggtggttgg 31554394
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 315 bits (159), Expect = 1e-82 Identities = 177/183 (96%) Strand = Plus / Plus Query: 501 ggaaagggagtgtgtgcgagttgtctatttcaagaatagattggatctatccggctgcac 560 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 27409572 ggaaagggagtgtgtgcgagttgtctatttcaagaatagattggatctatccggctgcac 27409631 Query: 561 tttagaatattttttagtatttttcggataaataagaaaagggtgcacgatctcgacgaa 620 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 27409632 tttagaatattttttagtatttttcaaataaataagaaaagggtgcacgatctcgacgaa 27409691 Query: 621 ttacttctgaataaattcagaaatcatatggaagaaccatagcatttcgcgactcattgg 680 |||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||| Sbjct: 27409692 ttacttctgaataaatgcagaaatcatatgaaagaaccatagcatttcgcgacctattgg 27409751 Query: 681 taa 683 ||| Sbjct: 27409752 taa 27409754 Score = 101 bits (51), Expect = 3e-18 Identities = 113/130 (86%), Gaps = 4/130 (3%) Strand = Plus / Plus Query: 507 ggagtgtgtgcgagttgtctatttcaagaatagattggatctatccggctgcactttaga 566 ||||||||||| | |||||||||| ||||||| ||||||||||||||||| | |||||| Sbjct: 31644949 ggagtgtgtgcaaattgtctattttaagaatatattggatctatccggctatattttaga 31645008 Query: 567 atattttttagtatttttcggataaataagaaaagggtgcacgatctcgacgaattactt 626 ||| ||| ||| ||||| |||| ||||||||||||||||||||||||||||| ||| | Sbjct: 31645009 ata--tttcagtgttttt-ggat-aataagaaaagggtgcacgatctcgacgatttattc 31645064 Query: 627 ctgaataaat 636 ||||| |||| Sbjct: 31645065 ctgaacaaat 31645074 Score = 63.9 bits (32), Expect = 6e-07 Identities = 47/52 (90%) Strand = Plus / Plus Query: 433 ttaataccgatattttagcaacaaatctaataaatctaactgtagtggttgg 484 |||||||| ||||||| | |||||||||||||||| ||||||| |||||||| Sbjct: 31644849 ttaataccaatatttttgtaacaaatctaataaatttaactgtggtggttgg 31644900
>emb|AJ428413.1|CFE428413 Calycanthus fertilis var. ferax complete chloroplast genome Length = 153337 Score = 214 bits (108), Expect = 3e-52 Identities = 183/213 (85%) Strand = Plus / Minus Query: 351 tctataagaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcactgg 410 |||||||||||| |||||||||||||||||||| ||||||||| | ||||||| Sbjct: 13440 tctataagaggaaagcatatgaaaaatgtaaccgattctttcgtttccttgggtcactgg 13381 Query: 411 ccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaataaatcta 470 |||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 13380 ccattcgctgggagtttcgggtttaataccgatattttagcaacaaatctaataaatcta 13321 Query: 471 actgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctattt 530 | ||||||| ||||||| |||| |||||||||||||||||||||||| ||||| Sbjct: 13320 agtgtagtgcttggtgtattgatcttttttggaaagggagtgtgtgcgagttgtgtattt 13261 Query: 531 caagaatagattggatctatccggctgcacttt 563 ||||||||| |||||| | ||||||||||||| Sbjct: 13260 caagaataggctggatccaaccggctgcacttt 13228 Score = 131 bits (66), Expect = 3e-27 Identities = 78/82 (95%) Strand = Plus / Minus Query: 602 ggtgcacgatctcgacgaattacttctgaataaattcagaaatcatatggaagaaccata 661 ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| Sbjct: 13195 ggtgcacgatctcgacgaattacttctgaataaattcagaaatcatacgcaagaaccata 13136 Query: 662 gcatttcgcgactcattggtaa 683 |||||||| |||| |||||||| Sbjct: 13135 gcatttcgtgacttattggtaa 13114
>gb|AY916449.1| Phalaenopsis aphrodite subsp. formosana plastid, complete genome Length = 148964 Score = 196 bits (99), Expect = 7e-47 Identities = 198/236 (83%) Strand = Plus / Minus Query: 328 aactttgttctttgttcgtcctatctataagaggagagcatatgaaaaatgtaacccatt 387 |||| ||||||||||| |||||||||||||| |||||||||||||||||| ||||| ||| Sbjct: 14094 aactctgttctttgttagtcctatctataaggggagagcatatgaaaaatataaccgatt 14035 Query: 388 ctttcgnnnnnnnagctcactggccatccgctggcagtttcgggcttaataccgatattt 447 |||| | | ||||||||||||||||| ||||||| | ||||||||||||||| Sbjct: 14034 cttttgtttccgtggggcactggccatccgctgggagtttcgagtttaataccgatattt 13975 Query: 448 tagcaacaaatctaataaatctaactgtagtggttggtgttttgannnnnnnnggaaagg 507 |||||||||||| ||||||||||| |||||| | ||||| |||| ||||||| Sbjct: 13974 tagcaacaaatccaataaatctaagcgtagtgctgggtgtattgattttctttggaaagg 13915 Query: 508 gagtgtgtgcgagttgtctatttcaagaatagattggatctatccggctgcacttt 563 ||||||||||||||||| ||||||||||||| |||||| || ||||||||||||| Sbjct: 13914 gagtgtgtgcgagttgtgtatttcaagaatacgttggatttaaccggctgcacttt 13859 Score = 73.8 bits (37), Expect = 7e-10 Identities = 75/88 (85%), Gaps = 6/88 (6%) Strand = Plus / Minus Query: 602 ggtgcacgatctcgacgaattacttctgaa------taaattcagaaatcatatggaaga 655 ||||||| |||||||||||||||||| ||| | |||||||||||||||| |||| Sbjct: 13781 ggtgcacaatctcgacgaattacttcggaattggattttattcagaaatcatatgtaaga 13722 Query: 656 accatagcatttcgcgactcattggtaa 683 |||||||||||||| |||| |||||||| Sbjct: 13721 accatagcatttcgtgactaattggtaa 13694
>ref|NM_195981.1| Oryza sativa (japonica cultivar-group) putative ATPase I subunit from chromosome 10 chloroplast insertion (OSJNBb0075K12.31), mRNA Length = 552 Score = 194 bits (98), Expect = 3e-46 Identities = 134/151 (88%) Strand = Plus / Plus Query: 369 atgaaaaatgtaacccattctttcgnnnnnnnagctcactggccatccgctggcagtttc 428 ||||||||||||||||||||||||| ||||||||||||||||||||| |||||| Sbjct: 1 atgaaaaatgtaacccattctttcgtttttttagctcactggccatccgctgggagtttc 60 Query: 429 gggcttaataccgatattttagcaacaaatctaataaatctaactgtagtggttggtgtt 488 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 gggcttaataccgatattttagcaacaaatctaataaatctaactgtagtggttggtgta 120 Query: 489 ttgannnnnnnnggaaagggagtgtgtgcga 519 |||| ||||||||||||||||||| Sbjct: 121 ttgatttattttggaaagggagtgtgtgcga 151
>emb|AJ627251.1| Nymphaea alba chloroplast, complete genome Length = 159930 Score = 194 bits (98), Expect = 3e-46 Identities = 179/211 (84%) Strand = Plus / Minus Query: 354 ataagaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcactggcca 413 |||||||||||||||||||||||| ||||| ||||||||| | |||||||||| Sbjct: 14696 ataagaggagagcatatgaaaaatctaaccgattctttcgtttttttgggtcactggcca 14637 Query: 414 tccgctggcagtttcgggcttaataccgatattttagcaacaaatctaataaatctaact 473 ||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||| | Sbjct: 14636 tccgccgggagtttcgggtttaataccgatattttagcaacaaatctaataaatctaagt 14577 Query: 474 gtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctatttcaa 533 |||||| ||||||| |||| |||||||||||||||||||||||| |||||||| Sbjct: 14576 gtagtgcttggtgtattgatcttttttggaaagggagtgtgtgcgagttgtgtatttcaa 14517 Query: 534 gaatagattggatctatccggctgcacttta 564 |||||| |||| | | || ||||||||||| Sbjct: 14516 gaataggctggaaccaaccagctgcacttta 14486 Score = 91.7 bits (46), Expect = 3e-15 Identities = 73/82 (89%) Strand = Plus / Minus Query: 602 ggtgcacgatctcgacgaattacttctgaataaattcagaaatcatatggaagaaccata 661 ||||||||||||| ||||||||||||||||||||| | || || |||| |||||||||| Sbjct: 14453 ggtgcacgatctcaacgaattacttctgaataaatcaataagtcctatgtaagaaccata 14394 Query: 662 gcatttcgcgactcattggtaa 683 |||||||| ||||| ||||||| Sbjct: 14393 gcatttcgtgactcgttggtaa 14372
>ref|NM_197455.1| Oryza sativa (japonica cultivar-group) ATPase I subunit (OSJNBa0034L04.43), mRNA Length = 552 Score = 188 bits (95), Expect = 2e-44 Identities = 115/124 (92%) Strand = Plus / Plus Query: 369 atgaaaaatgtaacccattctttcgnnnnnnnagctcactggccatccgctggcagtttc 428 ||||||||||||||||||||||||| ||||||||||||||||||||| |||||| Sbjct: 1 atgaaaaatgtaacccattctttcgtttttttagctcactggccatccgctgggagtttc 60 Query: 429 gggcttaataccgatattttagcaacaaatctaataaatctaactgtagtggttggtgtt 488 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 gggcttaataccgatattttagcaacaaatctaataaatctaactgtagtggttggtgta 120 Query: 489 ttga 492 |||| Sbjct: 121 ttga 124
>gb|DQ424856.1| Vitis vinifera cultivar Maxxa chloroplast, complete genome Length = 160928 Score = 188 bits (95), Expect = 2e-44 Identities = 164/192 (85%) Strand = Plus / Minus Query: 348 ctatctataagaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcac 407 ||||||||||||||||| |||||||||||||||||| ||||||||| | |||| Sbjct: 14651 ctatctataagaggagatcatatgaaaaatgtaaccgattctttcgtttccttgggtcac 14592 Query: 408 tggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaataaat 467 ||||||||||| || |||||||| ||||||||||||||||||||||||||| ||||||| Sbjct: 14591 tggccatccgccgggggtttcgggtttaataccgatattttagcaacaaatccaataaat 14532 Query: 468 ctaactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtcta 527 |||| ||||||| ||||||| |||| |||||||||||||||||||||||| || Sbjct: 14531 ctaagtgtagtgcttggtgtattgatcttttttggaaagggagtgtgtgcgagttgttta 14472 Query: 528 tttcaagaatag 539 |||||||||||| Sbjct: 14471 tttcaagaatag 14460 Score = 101 bits (51), Expect = 3e-18 Identities = 63/67 (94%) Strand = Plus / Minus Query: 617 cgaattacttctgaataaattcagaaatcatatggaagaaccatagcatttcgcgactca 676 ||||||||||||||||||||| |||||||||||| |||||||||||||||||| || ||| Sbjct: 14397 cgaattacttctgaataaattaagaaatcatatgtaagaaccatagcatttcgtgattca 14338 Query: 677 ttggtaa 683 ||||||| Sbjct: 14337 ttggtaa 14331
>emb|AJ879453.1| Acorus calamus chloroplast, complete genome Length = 153821 Score = 188 bits (95), Expect = 2e-44 Identities = 179/212 (84%) Strand = Plus / Minus Query: 328 aactttgttctttgttcgtcctatctataagaggagagcatatgaaaaatgtaacccatt 387 |||| ||||||||||| | | |||||||||||||||| |||||||||||| ||||| ||| Sbjct: 13168 aactctgttctttgttagccatatctataagaggagaacatatgaaaaatataaccgatt 13109 Query: 388 ctttcgnnnnnnnagctcactggccatccgctggcagtttcgggcttaataccgatattt 447 |||||| | |||||||||| ||| || ||||||||| ||||||||||||||| Sbjct: 13108 ctttcgtttccttgggccactggccattcgccgggagtttcgggtttaataccgatattt 13049 Query: 448 tagcaacaaatctaataaatctaactgtagtggttggtgttttgannnnnnnnggaaagg 507 |||||||||||||||||||||||| ||||||| ||||||| |||| ||||||| Sbjct: 13048 tagcaacaaatctaataaatctaagtgtagtgcttggtgtattgatcttttttggaaagg 12989 Query: 508 gagtgtgtgcgagttgtctatttcaagaatag 539 ||||||||||||||||| |||||||||||||| Sbjct: 12988 gagtgtgtgcgagttgtgtatttcaagaatag 12957 Score = 97.6 bits (49), Expect = 5e-17 Identities = 77/86 (89%), Gaps = 4/86 (4%) Strand = Plus / Minus Query: 602 ggtgcacgatctcgacgaattacttctgaataaattcaga----aatcatatggaagaac 657 ||||||| |||||||||||||||||||||||||||||| | ||||||||| |||||| Sbjct: 12898 ggtgcaccatctcgacgaattacttctgaataaattcataaatcaatcatatgtaagaac 12839 Query: 658 catagcatttcgcgactcattggtaa 683 |||||||||||| || |||||||||| Sbjct: 12838 catagcatttcgtgattcattggtaa 12813
>emb|X03775.1|CHSOATP1 Spinach plastid genes atpI-H-F for ATP synthase CF(O) subunits IV, III and I Length = 4066 Score = 184 bits (93), Expect = 3e-43 Identities = 168/198 (84%) Strand = Plus / Plus Query: 349 tatctataagaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcact 408 |||||||||||||||| |||||||||||||||||| ||||||||| | ||||| Sbjct: 2414 tatctataagaggagatcatatgaaaaatgtaaccgattctttcgttttcttgggtcact 2473 Query: 409 ggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaataaatc 468 |||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 2474 ggccatccgccgggagtttcgggtttaataccgatattttagcaacaaatctaataaatc 2533 Query: 469 taactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctat 528 | | ||||||| ||||||| |||| |||||||||||||||||| ||||| ||| Sbjct: 2534 tcagtgtagtgcttggtgtattgatcttttttggaaagggagtgtgtgcgggttgtttat 2593 Query: 529 ttcaagaatagattggat 546 ||||| ||||| |||||| Sbjct: 2594 ttcaaaaataggttggat 2611
>emb|AJ400848.1|SOL400848 Spinacia oleracea complete chloroplast genome Length = 150725 Score = 184 bits (93), Expect = 3e-43 Identities = 168/198 (84%) Strand = Plus / Minus Query: 349 tatctataagaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcact 408 |||||||||||||||| |||||||||||||||||| ||||||||| | ||||| Sbjct: 12109 tatctataagaggagatcatatgaaaaatgtaaccgattctttcgttttcttgggtcact 12050 Query: 409 ggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaataaatc 468 |||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 12049 ggccatccgccgggagtttcgggtttaataccgatattttagcaacaaatctaataaatc 11990 Query: 469 taactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctat 528 | | ||||||| ||||||| |||| |||||||||||||||||| ||||| ||| Sbjct: 11989 tcagtgtagtgcttggtgtattgatcttttttggaaagggagtgtgtgcgggttgtttat 11930 Query: 529 ttcaagaatagattggat 546 ||||| ||||| |||||| Sbjct: 11929 ttcaaaaataggttggat 11912
>gb|DQ383816.1| Lactuca sativa cultivar Salinas chloroplast, complete genome Length = 152772 Score = 180 bits (91), Expect = 4e-42 Identities = 163/192 (84%) Strand = Plus / Plus Query: 348 ctatctataagaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcac 407 ||||||||| ||||||| |||||||||||||||||| ||||||||| | ||| Sbjct: 26925 ctatctatacgaggagatcatatgaaaaatgtaaccgattctttcgtttctttgggccac 26984 Query: 408 tggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaataaat 467 ||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 26985 tggccatccgccgggagtttcgggtttaataccgatattttagcaacaaatctaataaat 27044 Query: 468 ctaactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtcta 527 |||| ||||||| |||| || |||| |||||||||||||||||||||||| || Sbjct: 27045 ctaagtgtagtgcttggggtcttgatcttttttggaaagggagtgtgtgcgagttgttta 27104 Query: 528 tttcaagaatag 539 |||||||||||| Sbjct: 27105 tttcaagaatag 27116 Score = 101 bits (51), Expect = 3e-18 Identities = 67/71 (94%), Gaps = 1/71 (1%) Strand = Plus / Plus Query: 599 aagggtgcacgatctcgacgaattacttctgaataaattcagaaatcatatggaagaacc 658 ||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||| Sbjct: 27176 aagggtgcatgatctcg-cgaattacttctgaataaattcagaaatcatatgtaagaact 27234 Query: 659 atagcatttcg 669 ||||||||||| Sbjct: 27235 atagcatttcg 27245
>gb|AY865171.1| Lactuca sativa chloroplast inversion region Length = 28722 Score = 180 bits (91), Expect = 4e-42 Identities = 163/192 (84%) Strand = Plus / Plus Query: 348 ctatctataagaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcac 407 ||||||||| ||||||| |||||||||||||||||| ||||||||| | ||| Sbjct: 20863 ctatctatacgaggagatcatatgaaaaatgtaaccgattctttcgtttctttgggccac 20922 Query: 408 tggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaataaat 467 ||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 20923 tggccatccgccgggagtttcgggtttaataccgatattttagcaacaaatctaataaat 20982 Query: 468 ctaactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtcta 527 |||| ||||||| |||| || |||| |||||||||||||||||||||||| || Sbjct: 20983 ctaagtgtagtgcttggggtcttgatcttttttggaaagggagtgtgtgcgagttgttta 21042 Query: 528 tttcaagaatag 539 |||||||||||| Sbjct: 21043 tttcaagaatag 21054 Score = 101 bits (51), Expect = 3e-18 Identities = 67/71 (94%), Gaps = 1/71 (1%) Strand = Plus / Plus Query: 599 aagggtgcacgatctcgacgaattacttctgaataaattcagaaatcatatggaagaacc 658 ||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||| Sbjct: 21114 aagggtgcatgatctcg-cgaattacttctgaataaattcagaaatcatatgtaagaact 21172 Query: 659 atagcatttcg 669 ||||||||||| Sbjct: 21173 atagcatttcg 21183
>gb|AY582139.1| Panax ginseng chloroplast, complete genome Length = 156318 Score = 180 bits (91), Expect = 4e-42 Identities = 163/192 (84%) Strand = Plus / Minus Query: 348 ctatctataagaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcac 407 ||||||||||||||||| |||||||||||||||||| ||||||||| | ||| Sbjct: 14237 ctatctataagaggagatcatatgaaaaatgtaaccgattctttcgtttctttgggccac 14178 Query: 408 tggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaataaat 467 ||||| ||||| || ||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 14177 tggccgtccgccgggagtttcgggtttaataccgatattttagcaacaaatctaataaat 14118 Query: 468 ctaactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtcta 527 |||| ||||||| |||| || |||| |||||||||||||||||||||||| || Sbjct: 14117 ctaagtgtagtgcttggggtattgatcttttttggaaagggagtgtgtgcgagttgttta 14058 Query: 528 tttcaagaatag 539 |||||||||||| Sbjct: 14057 tttcaagaatag 14046 Score = 75.8 bits (38), Expect = 2e-10 Identities = 72/82 (87%), Gaps = 1/82 (1%) Strand = Plus / Minus Query: 602 ggtgcacgatctcgacgaattacttctgaataaattcagaaatcatatggaagaaccata 661 |||||| |||||| |||||| ||||||||||||||| | |||||||||| |||||| ||| Sbjct: 13998 ggtgcatgatctc-acgaatgacttctgaataaattaataaatcatatgtaagaacgata 13940 Query: 662 gcatttcgcgactcattggtaa 683 |||||||| || || ||||||| Sbjct: 13939 gcatttcgtgattcgttggtaa 13918
>dbj|AP007232.1| Lactuca sativa chloroplast DNA, complete genome Length = 152765 Score = 180 bits (91), Expect = 4e-42 Identities = 163/192 (84%) Strand = Plus / Plus Query: 348 ctatctataagaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcac 407 ||||||||| ||||||| |||||||||||||||||| ||||||||| | ||| Sbjct: 26925 ctatctatacgaggagatcatatgaaaaatgtaaccgattctttcgtttctttgggccac 26984 Query: 408 tggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaataaat 467 ||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 26985 tggccatccgccgggagtttcgggtttaataccgatattttagcaacaaatctaataaat 27044 Query: 468 ctaactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtcta 527 |||| ||||||| |||| || |||| |||||||||||||||||||||||| || Sbjct: 27045 ctaagtgtagtgcttggggtcttgatcttttttggaaagggagtgtgtgcgagttgttta 27104 Query: 528 tttcaagaatag 539 |||||||||||| Sbjct: 27105 tttcaagaatag 27116 Score = 101 bits (51), Expect = 3e-18 Identities = 67/71 (94%), Gaps = 1/71 (1%) Strand = Plus / Plus Query: 599 aagggtgcacgatctcgacgaattacttctgaataaattcagaaatcatatggaagaacc 658 ||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||| Sbjct: 27176 aagggtgcatgatctcg-cgaattacttctgaataaattcagaaatcatatgtaagaact 27234 Query: 659 atagcatttcg 669 ||||||||||| Sbjct: 27235 atagcatttcg 27245
>gb|DQ386163.1| Solanum tuberosum cultivar Desiree chloroplast, complete genome Length = 155298 Score = 176 bits (89), Expect = 6e-41 Identities = 167/198 (84%) Strand = Plus / Minus Query: 348 ctatctataagaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcac 407 ||||||||||||||||| ||||||||||| |||||| ||||||||| | ||| Sbjct: 13201 ctatctataagaggagatcatatgaaaaacgtaaccgattctttcgtttctttgggccac 13142 Query: 408 tggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaataaat 467 |||||||| || || ||||||||| ||||||||||||||||||||||||||| ||||||| Sbjct: 13141 tggccatctgccgggagtttcgggtttaataccgatattttagcaacaaatccaataaat 13082 Query: 468 ctaactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtcta 527 |||| ||||||| ||||||| |||| |||||||||||||||||||||||| || Sbjct: 13081 ctaagtgtagtgcttggtgtattgattttttttggaaagggagtgtgtgcgagttgttta 13022 Query: 528 tttcaagaatagattgga 545 |||||||||||| ||||| Sbjct: 13021 tttcaagaataggttgga 13004 Score = 99.6 bits (50), Expect = 1e-17 Identities = 75/82 (91%), Gaps = 1/82 (1%) Strand = Plus / Minus Query: 602 ggtgcacgatctcgacgaattacttctgaataaattcagaaatcatatggaagaaccata 661 |||||| ||||||| ||||||||||||| ||||||||| |||| ||||| |||||||||| Sbjct: 12962 ggtgcatgatctcg-cgaattacttctgtataaattcataaattatatgtaagaaccata 12904 Query: 662 gcatttcgcgactcattggtaa 683 ||||||||||| |||||||||| Sbjct: 12903 gcatttcgcgattcattggtaa 12882
>emb|AM087200.2| Lycopersicon esculentum complete chloroplast genome Length = 155460 Score = 176 bits (89), Expect = 6e-41 Identities = 167/198 (84%) Strand = Plus / Minus Query: 348 ctatctataagaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcac 407 ||||||||||||||||| ||||||||||| |||||| ||||||||| | ||| Sbjct: 13064 ctatctataagaggagatcatatgaaaaacgtaaccgattctttcgtttctttgggccac 13005 Query: 408 tggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaataaat 467 |||||||| || || ||||||||| ||||||||||||||||||||||||||| ||||||| Sbjct: 13004 tggccatctgccgggagtttcgggtttaataccgatattttagcaacaaatccaataaat 12945 Query: 468 ctaactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtcta 527 |||| ||||||| ||||||| |||| |||||||||||||||||||||||| || Sbjct: 12944 ctaagtgtagtgcttggtgtattgattttttttggaaagggagtgtgtgcgagttgttta 12885 Query: 528 tttcaagaatagattgga 545 |||||||||||| ||||| Sbjct: 12884 tttcaagaataggttgga 12867 Score = 99.6 bits (50), Expect = 1e-17 Identities = 75/82 (91%), Gaps = 1/82 (1%) Strand = Plus / Minus Query: 602 ggtgcacgatctcgacgaattacttctgaataaattcagaaatcatatggaagaaccata 661 |||||| ||||||| ||||||||||||| ||||||||| |||| ||||| |||||||||| Sbjct: 12825 ggtgcatgatctcg-cgaattacttctgtataaattcataaattatatgtaagaaccata 12767 Query: 662 gcatttcgcgactcattggtaa 683 ||||||||||| |||||||||| Sbjct: 12766 gcatttcgcgattcattggtaa 12745
>gb|DQ347959.1| Lycopersicon esculentum cultivar LA3023 chloroplast, complete genome Length = 155461 Score = 176 bits (89), Expect = 6e-41 Identities = 167/198 (84%) Strand = Plus / Minus Query: 348 ctatctataagaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcac 407 ||||||||||||||||| ||||||||||| |||||| ||||||||| | ||| Sbjct: 13061 ctatctataagaggagatcatatgaaaaacgtaaccgattctttcgtttctttgggccac 13002 Query: 408 tggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaataaat 467 |||||||| || || ||||||||| ||||||||||||||||||||||||||| ||||||| Sbjct: 13001 tggccatctgccgggagtttcgggtttaataccgatattttagcaacaaatccaataaat 12942 Query: 468 ctaactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtcta 527 |||| ||||||| ||||||| |||| |||||||||||||||||||||||| || Sbjct: 12941 ctaagtgtagtgcttggtgtattgattttttttggaaagggagtgtgtgcgagttgttta 12882 Query: 528 tttcaagaatagattgga 545 |||||||||||| ||||| Sbjct: 12881 tttcaagaataggttgga 12864 Score = 99.6 bits (50), Expect = 1e-17 Identities = 75/82 (91%), Gaps = 1/82 (1%) Strand = Plus / Minus Query: 602 ggtgcacgatctcgacgaattacttctgaataaattcagaaatcatatggaagaaccata 661 |||||| ||||||| ||||||||||||| ||||||||| |||| ||||| |||||||||| Sbjct: 12822 ggtgcatgatctcg-cgaattacttctgtataaattcataaattatatgtaagaaccata 12764 Query: 662 gcatttcgcgactcattggtaa 683 ||||||||||| |||||||||| Sbjct: 12763 gcatttcgcgattcattggtaa 12742
>gb|DQ347958.1| Solanum bulbocastanum cultivar PT29 chloroplast, complete genome Length = 155371 Score = 176 bits (89), Expect = 6e-41 Identities = 167/198 (84%) Strand = Plus / Minus Query: 348 ctatctataagaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcac 407 ||||||||||||||||| ||||||||||| |||||| ||||||||| | ||| Sbjct: 13082 ctatctataagaggagatcatatgaaaaacgtaaccgattctttcgtttctttgggccac 13023 Query: 408 tggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaataaat 467 |||||||| || || ||||||||| ||||||||||||||||||||||||||| ||||||| Sbjct: 13022 tggccatctgccgggagtttcgggtttaataccgatattttagcaacaaatccaataaat 12963 Query: 468 ctaactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtcta 527 |||| ||||||| ||||||| |||| |||||||||||||||||||||||| || Sbjct: 12962 ctaagtgtagtgcttggtgtattgattttttttggaaagggagtgtgtgcgagttgttta 12903 Query: 528 tttcaagaatagattgga 545 |||||||||||| ||||| Sbjct: 12902 tttcaagaataggttgga 12885 Score = 91.7 bits (46), Expect = 3e-15 Identities = 74/82 (90%), Gaps = 1/82 (1%) Strand = Plus / Minus Query: 602 ggtgcacgatctcgacgaattacttctgaataaattcagaaatcatatggaagaaccata 661 |||||| ||||||| ||||||||||||| ||||||||| |||| ||||| |||||||||| Sbjct: 12843 ggtgcatgatctcg-cgaattacttctgtataaattcataaattatatgtaagaaccata 12785 Query: 662 gcatttcgcgactcattggtaa 683 ||||||||| | |||||||||| Sbjct: 12784 gcatttcgctattcattggtaa 12763
>emb|Z00044.2|CHNTXX Nicotiana tabacum chloroplast genome DNA Length = 155943 Score = 172 bits (87), Expect = 1e-39 Identities = 162/192 (84%) Strand = Plus / Minus Query: 348 ctatctataagaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcac 407 ||||||||||||||||| ||||||||||| |||||| ||||||||| | ||| Sbjct: 13478 ctatctataagaggagatcatatgaaaaacgtaaccgattctttcgtttctttgggccac 13419 Query: 408 tggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaataaat 467 |||||||| || || ||||||||| ||||||||||||||||||||||||||| ||||||| Sbjct: 13418 tggccatctgccgggagtttcgggtttaataccgatattttagcaacaaatccaataaat 13359 Query: 468 ctaactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtcta 527 |||| ||||||| ||||||| |||| |||||||||||||||||||||||| || Sbjct: 13358 ctaagtgtagtgcttggtgtattgattttttttggaaagggagtgtgtgcgagttgttta 13299 Query: 528 tttcaagaatag 539 |||||||||||| Sbjct: 13298 tttcaagaatag 13287 Score = 115 bits (58), Expect = 2e-22 Identities = 77/82 (93%), Gaps = 1/82 (1%) Strand = Plus / Minus Query: 602 ggtgcacgatctcgacgaattacttctgaataaattcagaaatcatatggaagaaccata 661 |||||| ||||||| |||||||||||||||||||||||||||| ||||| |||||||||| Sbjct: 13239 ggtgcatgatctcg-cgaattacttctgaataaattcagaaattatatgtaagaaccata 13181 Query: 662 gcatttcgcgactcattggtaa 683 ||||||||||| |||||||||| Sbjct: 13180 gcatttcgcgattcattggtaa 13159
>gb|DQ383815.1| Helianthus annuus cultivar line HA383 chloroplast, complete genome Length = 151104 Score = 172 bits (87), Expect = 1e-39 Identities = 162/192 (84%) Strand = Plus / Plus Query: 348 ctatctataagaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcac 407 ||||||||| ||||||| |||||||||||||||||| ||||||||| | ||| Sbjct: 27038 ctatctatatgaggagatcatatgaaaaatgtaaccgattctttcgtttctttgggccac 27097 Query: 408 tggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaataaat 467 ||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 27098 tggccatccgccgggagtttcgggtttaataccgatattttagcaacaaatctaataaat 27157 Query: 468 ctaactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtcta 527 |||| |||||| |||| || |||| |||||||||||||||||||||||| || Sbjct: 27158 ctaagtgtagtacttggggtcttgatcttttttggaaagggagtgtgtgcgagttgttta 27217 Query: 528 tttcaagaatag 539 |||||||||||| Sbjct: 27218 tttcaagaatag 27229 Score = 93.7 bits (47), Expect = 7e-16 Identities = 63/67 (94%), Gaps = 1/67 (1%) Strand = Plus / Plus Query: 603 gtgcacgatctcgacgaattacttctgaataaattcagaaatcatatggaagaaccatag 662 ||||| ||||||| |||||||||||||||||||||||||||||||||| |||||| |||| Sbjct: 27293 gtgcatgatctcg-cgaattacttctgaataaattcagaaatcatatgtaagaactatag 27351 Query: 663 catttcg 669 ||||||| Sbjct: 27352 catttcg 27358
>emb|AJ271079.2|OEL271079 Oenothera elata subsp. hookeri chloroplast plastome I, complete sequence Length = 163935 Score = 172 bits (87), Expect = 1e-39 Identities = 177/212 (83%) Strand = Plus / Plus Query: 349 tatctataagaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcact 408 |||||||||||||||| |||||||||||||||| ||||||||| | ||||| Sbjct: 53328 tatctataagaggagattgtatgaaaaatgtaaccgattctttcgtttccttggttcact 53387 Query: 409 ggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaataaatc 468 |||||||||| || ||||||||| ||||||||||||||||||||||||||| |||||||| Sbjct: 53388 ggccatccgccgggagtttcgggtttaataccgatattttagcaacaaatccaataaatc 53447 Query: 469 taactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctat 528 ||| |||||| ||||||| |||| |||||||||||||||||||||||| ||| Sbjct: 53448 taagcgtagtgcttggtgtattgatctgttttggaaagggagtgtgtgcgagttgtttat 53507 Query: 529 ttcaagaatagattggatctatccggctgcac 560 ||||||||||| |||| | | |||||||||| Sbjct: 53508 ttcaagaataggctggacccaaccggctgcac 53539 Score = 44.1 bits (22), Expect = 0.60 Identities = 49/58 (84%), Gaps = 5/58 (8%) Strand = Plus / Plus Query: 617 cgaattacttctgaataaattcag-----aaatcatatggaagaaccatagcatttcg 669 ||||| |||||||||||||||||| |||||||| |||||||||||||||||| Sbjct: 53584 cgaatgacttctgaataaattcagttaataaatcatagttaagaaccatagcatttcg 53641
>dbj|AB237912.1| Nicotiana sylvestris chloroplast DNA, complete sequence Length = 155941 Score = 172 bits (87), Expect = 1e-39 Identities = 162/192 (84%) Strand = Plus / Minus Query: 348 ctatctataagaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcac 407 ||||||||||||||||| ||||||||||| |||||| ||||||||| | ||| Sbjct: 13476 ctatctataagaggagatcatatgaaaaacgtaaccgattctttcgtttctttgggccac 13417 Query: 408 tggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaataaat 467 |||||||| || || ||||||||| ||||||||||||||||||||||||||| ||||||| Sbjct: 13416 tggccatctgccgggagtttcgggtttaataccgatattttagcaacaaatccaataaat 13357 Query: 468 ctaactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtcta 527 |||| ||||||| ||||||| |||| |||||||||||||||||||||||| || Sbjct: 13356 ctaagtgtagtgcttggtgtattgattttttttggaaagggagtgtgtgcgagttgttta 13297 Query: 528 tttcaagaatag 539 |||||||||||| Sbjct: 13296 tttcaagaatag 13285 Score = 115 bits (58), Expect = 2e-22 Identities = 77/82 (93%), Gaps = 1/82 (1%) Strand = Plus / Minus Query: 602 ggtgcacgatctcgacgaattacttctgaataaattcagaaatcatatggaagaaccata 661 |||||| ||||||| |||||||||||||||||||||||||||| ||||| |||||||||| Sbjct: 13237 ggtgcatgatctcg-cgaattacttctgaataaattcagaaattatatgtaagaaccata 13179 Query: 662 gcatttcgcgactcattggtaa 683 ||||||||||| |||||||||| Sbjct: 13178 gcatttcgcgattcattggtaa 13157
>dbj|AB240139.1| Nicotiana tomentosiformis chloroplast DNA, complete sequence Length = 155745 Score = 172 bits (87), Expect = 1e-39 Identities = 162/192 (84%) Strand = Plus / Minus Query: 348 ctatctataagaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcac 407 ||||||||||||||||| ||||||||||| |||||| ||||||||| | ||| Sbjct: 13413 ctatctataagaggagatcatatgaaaaacgtaaccgattctttcgtttctttgggccac 13354 Query: 408 tggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaataaat 467 |||||||| || || ||||||||| ||||||||||||||||||||||||||| ||||||| Sbjct: 13353 tggccatctgccgggagtttcgggtttaataccgatattttagcaacaaatccaataaat 13294 Query: 468 ctaactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtcta 527 |||| ||||||| ||||||| |||| |||||||||||||||||||||||| || Sbjct: 13293 ctaagtgtagtgcttggtgtattgattttttttggaaagggagtgtgtgcgagttgttta 13234 Query: 528 tttcaagaatag 539 |||||||||||| Sbjct: 13233 tttcaagaatag 13222 Score = 107 bits (54), Expect = 5e-20 Identities = 76/82 (92%), Gaps = 1/82 (1%) Strand = Plus / Minus Query: 602 ggtgcacgatctcgacgaattacttctgaataaattcagaaatcatatggaagaaccata 661 |||||| ||||||| ||||||||||||||||||||||| |||| ||||| |||||||||| Sbjct: 13174 ggtgcatgatctcg-cgaattacttctgaataaattcataaattatatgtaagaaccata 13116 Query: 662 gcatttcgcgactcattggtaa 683 ||||||||||| |||||||||| Sbjct: 13115 gcatttcgcgattcattggtaa 13094
>gb|M10124.1|TOBCPATPB Tobacco chloroplast ATPase subunits I and III gene, complete cds, and ATPase subunit alpha, 5' end Length = 2550 Score = 172 bits (87), Expect = 1e-39 Identities = 162/192 (84%) Strand = Plus / Plus Query: 348 ctatctataagaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcac 407 ||||||||||||||||| ||||||||||| |||||| ||||||||| | ||| Sbjct: 1126 ctatctataagaggagatcatatgaaaaacgtaaccgattctttcgtttctttgggccac 1185 Query: 408 tggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaataaat 467 |||||||| || || ||||||||| ||||||||||||||||||||||||||| ||||||| Sbjct: 1186 tggccatctgccgggagtttcgggtttaataccgatattttagcaacaaatccaataaat 1245 Query: 468 ctaactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtcta 527 |||| ||||||| ||||||| |||| |||||||||||||||||||||||| || Sbjct: 1246 ctaagtgtagtgcttggtgtattgattttttttggaaagggagtgtgtgcgagttgttta 1305 Query: 528 tttcaagaatag 539 |||||||||||| Sbjct: 1306 tttcaagaatag 1317 Score = 115 bits (58), Expect = 2e-22 Identities = 77/82 (93%), Gaps = 1/82 (1%) Strand = Plus / Plus Query: 602 ggtgcacgatctcgacgaattacttctgaataaattcagaaatcatatggaagaaccata 661 |||||| ||||||| |||||||||||||||||||||||||||| ||||| |||||||||| Sbjct: 1365 ggtgcatgatctcg-cgaattacttctgaataaattcagaaattatatgtaagaaccata 1423 Query: 662 gcatttcgcgactcattggtaa 683 ||||||||||| |||||||||| Sbjct: 1424 gcatttcgcgattcattggtaa 1445
>gb|DQ231562.1| Solanum tuberosum chloroplast, complete genome Length = 155312 Score = 168 bits (85), Expect = 2e-38 Identities = 166/198 (83%) Strand = Plus / Minus Query: 348 ctatctataagaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcac 407 ||||||||||||||||| ||||||||||| ||| |||||||||||| | ||| Sbjct: 13200 ctatctataagaggagatcatatgaaaaacgtaccccattctttcgtttctttgggccac 13141 Query: 408 tggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaataaat 467 |||||||| || || ||||||||| ||||||||||| ||||||||||||||| ||||||| Sbjct: 13140 tggccatctgccgggagtttcgggtttaataccgattttttagcaacaaatccaataaat 13081 Query: 468 ctaactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtcta 527 |||| ||||||| ||||||| |||| |||||||||||||||||||||||| || Sbjct: 13080 ctaagtgtagtgcttggtgtattgattttttttggaaagggagtgtgtgcgagttgttta 13021 Query: 528 tttcaagaatagattgga 545 |||||||||||| ||||| Sbjct: 13020 tttcaagaataggttgga 13003 Score = 99.6 bits (50), Expect = 1e-17 Identities = 75/82 (91%), Gaps = 1/82 (1%) Strand = Plus / Minus Query: 602 ggtgcacgatctcgacgaattacttctgaataaattcagaaatcatatggaagaaccata 661 |||||| ||||||| ||||||||||||| ||||||||| |||| ||||| |||||||||| Sbjct: 12961 ggtgcatgatctcg-cgaattacttctgtataaattcataaattatatgtaagaaccata 12903 Query: 662 gcatttcgcgactcattggtaa 683 ||||||||||| |||||||||| Sbjct: 12902 gcatttcgcgattcattggtaa 12881
>gb|DQ345959.1| Gossypium hirsutum cultivar coker 310 FR chloroplast, complete genome Length = 160301 Score = 167 bits (84), Expect = 6e-38 Identities = 153/181 (84%) Strand = Plus / Minus Query: 359 aggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcactggccatccgc 418 |||||| |||||||||||||||||| ||||||||| | ||||||||||||||| Sbjct: 13300 aggagatcatatgaaaaatgtaaccgattctttcgtttccttgggtcactggccatccgc 13241 Query: 419 tggcagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtagt 478 || ||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct: 13240 cgggagtttcggggttaataccgatattttagcaacaaatccaataaatctaagtgtagt 13181 Query: 479 ggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctatttcaagaata 538 ||||||| |||| |||||||||||||||||||||||| ||||||||||||| Sbjct: 13180 ccttggtgtattgatcttttttggaaagggagtgtgtgcgagttgtttatttcaagaata 13121 Query: 539 g 539 | Sbjct: 13120 g 13120 Score = 60.0 bits (30), Expect = 1e-05 Identities = 77/90 (85%), Gaps = 2/90 (2%) Strand = Plus / Minus Query: 594 aagaaaagggtgcacgatctcgacgaattacttctgaataaattcagaaa-tcatatgga 652 |||||||| ||||| |||| || ||||||||||||||||||||| ||| |||||| Sbjct: 13077 aagaaaagagtgcatgatcccg-cgaattacttctgaataaatttttaaaatcatattat 13019 Query: 653 agaaccatagcatttcgcgactcattggta 682 ||||||||||||||||| || ||||||||| Sbjct: 13018 agaaccatagcatttcgtgattcattggta 12989
>emb|AJ316582.1|ABE316582 Atropa belladonna complete chloroplast genome, strain Ab5p(kan) Length = 156687 Score = 165 bits (83), Expect = 2e-37 Identities = 161/192 (83%) Strand = Plus / Minus Query: 348 ctatctataagaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcac 407 ||||||||||||||||| ||||||||||| |||||| ||||||||| | ||| Sbjct: 13261 ctatctataagaggagatcatatgaaaaacgtaaccgattctttcgtttctttgggccac 13202 Query: 408 tggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaataaat 467 |||||||| || || ||||||||| ||||||||||||||||||||||||||| ||||||| Sbjct: 13201 tggccatctgccgggagtttcgggtttaataccgatattttagcaacaaatccaataaat 13142 Query: 468 ctaactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtcta 527 |||| |||||| ||||||| |||| |||||||||||||||||||||||| || Sbjct: 13141 ctaagtgtagtccttggtgtattgattttttttggaaagggagtgtgtgcgagttgttta 13082 Query: 528 tttcaagaatag 539 |||||||||||| Sbjct: 13081 tttcaagaatag 13070 Score = 107 bits (54), Expect = 5e-20 Identities = 76/82 (92%), Gaps = 1/82 (1%) Strand = Plus / Minus Query: 602 ggtgcacgatctcgacgaattacttctgaataaattcagaaatcatatggaagaaccata 661 |||||| ||||||| ||||||||||||| |||||||||||||| ||||| |||||||||| Sbjct: 13009 ggtgcatgatctcg-cgaattacttctgtataaattcagaaattatatgtaagaaccata 12951 Query: 662 gcatttcgcgactcattggtaa 683 ||||||||||| |||||||||| Sbjct: 12950 gcatttcgcgattcattggtaa 12929
>emb|AJ506156.2|ATR506156 Amborella trichopoda chloroplast genomic DNA, complete sequence Length = 162686 Score = 163 bits (82), Expect = 9e-37 Identities = 187/227 (82%) Strand = Plus / Minus Query: 338 tttgttcgtcctatctataagaggagagcatatgaaaaatgtaacccattctttcgnnnn 397 |||||| |||||||||| |||||||||| ||||||||||||||||| | ||||||| Sbjct: 16371 tttgttagtcctatctagaagaggagagtatatgaaaaatgtaaccgactctttcgtttc 16312 Query: 398 nnnagctcactggccatccgctggcagtttcgggcttaataccgatattttagcaacaaa 457 | ||||||||||| || || |||||||| |||||||||||||||| |||||||| Sbjct: 16311 cttgggccactggccatctgccggaagtttcggatttaataccgatatttttgcaacaaa 16252 Query: 458 tctaataaatctaactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgc 517 || ||||||||||| ||| ||| ||||||| |||| ||||||||||||||||| Sbjct: 16251 tccaataaatctaagtgtggtgcttggtgtgttgatttttttcggaaagggagtgtgtgc 16192 Query: 518 gagttgtctatttcaagaatagattggatctatccggctgcacttta 564 ||||||| |||||||||||||| ||||||| || ||||||||||| Sbjct: 16191 gagttgtttatttcaagaataggttggatcctaccagctgcacttta 16145 Score = 99.6 bits (50), Expect = 1e-17 Identities = 74/82 (90%) Strand = Plus / Minus Query: 602 ggtgcacgatctcgacgaattacttctgaataaattcagaaatcatatggaagaaccata 661 |||||| |||| ||||||||||||||||||||||| |||||||||||| | |||| ||| Sbjct: 15527 ggtgcatgatcccgacgaattacttctgaataaataaagaaatcatatgtaggaactata 15468 Query: 662 gcatttcgcgactcattggtaa 683 |||||||| ||||||||||||| Sbjct: 15467 gcatttcgtgactcattggtaa 15446
>dbj|AB189069.1| Silene latifolia chloroplast DNA, partial sequence, rpoB gene to rps7 gene region Length = 47249 Score = 161 bits (81), Expect = 4e-36 Identities = 165/198 (83%) Strand = Plus / Plus Query: 349 tatctataagaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcact 408 ||||||||| |||||| | |||||||||||||||| ||||||||| | ||||| Sbjct: 14617 tatctataaaaggagatcttatgaaaaatgtaaccgattctttcgttttattgggtcact 14676 Query: 409 ggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaataaatc 468 |||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 14677 ggccatccgccgagagtttcggggttaataccgatattttagcaacaaatctaataaatc 14736 Query: 469 taactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctat 528 | | |||||| ||||||| |||| |||||||||||||||||| ||||| ||| Sbjct: 14737 tcagcgtagtgattggtgtattgatcttttttggaaagggagtgtgtgcgggttgtttat 14796 Query: 529 ttcaagaatagattggat 546 ||||||||||| |||||| Sbjct: 14797 ttcaagaataggttggat 14814 Score = 60.0 bits (30), Expect = 1e-05 Identities = 50/56 (89%), Gaps = 3/56 (5%) Strand = Plus / Plus Query: 617 cgaattacttctgaataaattcagaaatcatatggaagaaccatagcatttcgcga 672 ||||||||||||||||||| | |||| ||||| ||||||||||||||||||||| Sbjct: 14872 cgaattacttctgaataaa---aaaaattatatgtaagaaccatagcatttcgcga 14924
>gb|AY780259.1| Eucalyptus globulus subsp. globulus chloroplast, complete genome Length = 160286 Score = 151 bits (76), Expect = 4e-33 Identities = 157/189 (83%) Strand = Plus / Minus Query: 349 tatctataagaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcact 408 |||||||||||||||| |||||||||||||||| ||||||||| | ||||| Sbjct: 14210 tatctataagaggagattgtatgaaaaatgtaaccgattctttcgtttccttgggtcact 14151 Query: 409 ggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaataaatc 468 ||||||| || || |||||||| ||||||||||||||||||||||||||| |||||||| Sbjct: 14150 ggccatcggccgggagtttcggatttaataccgatattttagcaacaaatccaataaatc 14091 Query: 469 taactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctat 528 ||| |||||| ||||||| |||| |||||||||||||||||||||||| ||| Sbjct: 14090 taagtgtagtccttggtgtattgatcttttttggaaagggagtgtgtgcgagttgtttat 14031 Query: 529 ttcaagaat 537 ||||||||| Sbjct: 14030 ttcaagaat 14022 Score = 56.0 bits (28), Expect = 2e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 628 tgaataaattcagaaatcatatggaagaaccatagcatttcgcgactcattggtaa 683 |||||||||| | |||| |||| |||||||||||||||||| || |||||||||| Sbjct: 13929 tgaataaattaataaataatatttaagaaccatagcatttcgtgattcattggtaa 13874 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 617 cgaattacttctgaataaatt 637 ||||||||||||||||||||| Sbjct: 13953 cgaattacttctgaataaatt 13933
>gb|AC093544.8| Medicago truncatula chloroplast, complete genome, complete sequence Length = 124033 Score = 141 bits (71), Expect = 3e-30 Identities = 124/143 (86%), Gaps = 1/143 (0%) Strand = Plus / Minus Query: 406 actggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaataa 465 ||||||||||||| || ||||||||| || |||||||||||||||||||||||||||||| Sbjct: 75565 actggccatccgccggaagtttcgggtttgataccgatattttagcaacaaatctaataa 75506 Query: 466 atctaactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtc 525 |||||| ||||||| | ||||| || | |||||||||||||||||||||||| Sbjct: 75505 atctaagtgtagtgctaggtgtattaattttttttggaaagggagtgtgtgcgagttgtt 75446 Query: 526 tatttc-aagaatagattggatc 547 |||||| |||||||||||||||| Sbjct: 75445 tatttcaaagaatagattggatc 75423 Score = 56.0 bits (28), Expect = 2e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 652 aagaaccatagcatttcgcgactcattggtaa 683 ||||||||||||||||||||| |||||||||| Sbjct: 75336 aagaaccatagcatttcgcgattcattggtaa 75305
>gb|U13703.1|BOU13703 Brassica oleracea chloroplast ATP synthase CF-0 subunit I (atpF) gene, partial cds Length = 293 Score = 141 bits (71), Expect = 3e-30 Identities = 152/184 (82%) Strand = Plus / Plus Query: 356 aagaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcactggccatc 415 ||||||||| ||||||||||| ||||| ||||||||| | |||||||||||| Sbjct: 22 aagaggagattatatgaaaaatttaaccgattctttcgtttacttgggtcactggccatc 81 Query: 416 cgctggcagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgt 475 ||| || ||||||||| ||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 82 cgccgggagtttcgggtttaataccgatattttagcaacaaatctaataaatctaagtgt 141 Query: 476 agtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctatttcaaga 535 ||| | ||||| |||| |||||||||||||||| ||||||| ||||||||| Sbjct: 142 agtcttcggtgtattgatcttttttggaaagggagtgtgtgtgagttgttcatttcaaga 201 Query: 536 atag 539 |||| Sbjct: 202 atag 205
>gb|DQ167399.1| Oryza sativa (indica cultivar-group) isolate 93-11 mitochondrion, complete genome Length = 491515 Score = 139 bits (70), Expect = 1e-29 Identities = 140/158 (88%), Gaps = 4/158 (2%) Strand = Plus / Minus Query: 15 tttactcctatttattactcctggnaattatctatttatcgggnacagnataataccgca 74 |||||||||||||||||||||||| |||||||||||||||||| |||| | |||||| || Sbjct: 269389 tttactcctatttattactcctgg-aattatctatttatcggg-acag-acaatacccca 269333 Query: 75 ttctaggaagggctgagttgagtatgattaatttagaagatatgctcgccttcttatttc 134 | |||||| ||||| ||||| || || |||||||| ||||||||||||||||| ||| Sbjct: 269332 ccccaggaagagctgatttgaggataatcaatttagaggatatgctcgccttcttccttc 269273 Query: 135 ccgtccttagtttaggaaagtggaaagt-tttttcctt 171 ||||||||||||||||| |||||||||| ||||||||| Sbjct: 269272 ccgtccttagtttaggacagtggaaagtctttttcctt 269235
>gb|DQ167807.1| Oryza sativa (japonica cultivar-group) isolate PA64S mitochondrion, complete genome Length = 490673 Score = 139 bits (70), Expect = 1e-29 Identities = 140/158 (88%), Gaps = 4/158 (2%) Strand = Plus / Minus Query: 15 tttactcctatttattactcctggnaattatctatttatcgggnacagnataataccgca 74 |||||||||||||||||||||||| |||||||||||||||||| |||| | |||||| || Sbjct: 268580 tttactcctatttattactcctgg-aattatctatttatcggg-acag-acaatacccca 268524 Query: 75 ttctaggaagggctgagttgagtatgattaatttagaagatatgctcgccttcttatttc 134 | |||||| ||||| ||||| || || |||||||| ||||||||||||||||| ||| Sbjct: 268523 ccccaggaagagctgatttgaggataatcaatttagaggatatgctcgccttcttccttc 268464 Query: 135 ccgtccttagtttaggaaagtggaaagt-tttttcctt 171 ||||||||||||||||| |||||||||| ||||||||| Sbjct: 268463 ccgtccttagtttaggacagtggaaagtctttttcctt 268426
>gb|DQ167400.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare mitochondrion, complete genome Length = 490669 Score = 139 bits (70), Expect = 1e-29 Identities = 140/158 (88%), Gaps = 4/158 (2%) Strand = Plus / Minus Query: 15 tttactcctatttattactcctggnaattatctatttatcgggnacagnataataccgca 74 |||||||||||||||||||||||| |||||||||||||||||| |||| | |||||| || Sbjct: 268577 tttactcctatttattactcctgg-aattatctatttatcggg-acag-acaatacccca 268521 Query: 75 ttctaggaagggctgagttgagtatgattaatttagaagatatgctcgccttcttatttc 134 | |||||| ||||| ||||| || || |||||||| ||||||||||||||||| ||| Sbjct: 268520 ccccaggaagagctgatttgaggataatcaatttagaggatatgctcgccttcttccttc 268461 Query: 135 ccgtccttagtttaggaaagtggaaagt-tttttcctt 171 ||||||||||||||||| |||||||||| ||||||||| Sbjct: 268460 ccgtccttagtttaggacagtggaaagtctttttcctt 268423
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 139 bits (70), Expect = 1e-29 Identities = 140/158 (88%), Gaps = 4/158 (2%) Strand = Plus / Plus Query: 15 tttactcctatttattactcctggnaattatctatttatcgggnacagnataataccgca 74 |||||||||||||||||||||||| |||||||||||||||||| |||| | |||||| || Sbjct: 20691126 tttactcctatttattactcctgg-aattatctatttatcggg-acag-acaatacccca 20691182 Query: 75 ttctaggaagggctgagttgagtatgattaatttagaagatatgctcgccttcttatttc 134 | |||||| ||||| ||||| || || |||||||| ||||||||||||||||| ||| Sbjct: 20691183 ccccaggaagagctgatttgaggataatcaatttagaggatatgctcgccttcttccttc 20691242 Query: 135 ccgtccttagtttaggaaagtggaaagt-tttttcctt 171 ||||||||||||||||| |||||||||| ||||||||| Sbjct: 20691243 ccgtccttagtttaggacagtggaaagtctttttcctt 20691280
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 139 bits (70), Expect = 1e-29 Identities = 140/158 (88%), Gaps = 4/158 (2%) Strand = Plus / Plus Query: 15 tttactcctatttattactcctggnaattatctatttatcgggnacagnataataccgca 74 |||||||||||||||||||||||| |||||||||||||||||| |||| | |||||| || Sbjct: 20617340 tttactcctatttattactcctgg-aattatctatttatcggg-acag-acaatacccca 20617396 Query: 75 ttctaggaagggctgagttgagtatgattaatttagaagatatgctcgccttcttatttc 134 | |||||| ||||| ||||| || || |||||||| ||||||||||||||||| ||| Sbjct: 20617397 ccccaggaagagctgatttgaggataatcaatttagaggatatgctcgccttcttccttc 20617456 Query: 135 ccgtccttagtttaggaaagtggaaagt-tttttcctt 171 ||||||||||||||||| |||||||||| ||||||||| Sbjct: 20617457 ccgtccttagtttaggacagtggaaagtctttttcctt 20617494
>emb|AL713949.4|CNS07YPS Oryza sativa chromosome 12, . BAC OJ1521_B04 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 113752 Score = 139 bits (70), Expect = 1e-29 Identities = 140/158 (88%), Gaps = 4/158 (2%) Strand = Plus / Plus Query: 15 tttactcctatttattactcctggnaattatctatttatcgggnacagnataataccgca 74 |||||||||||||||||||||||| |||||||||||||||||| |||| | |||||| || Sbjct: 101788 tttactcctatttattactcctgg-aattatctatttatcggg-acag-acaatacccca 101844 Query: 75 ttctaggaagggctgagttgagtatgattaatttagaagatatgctcgccttcttatttc 134 | |||||| ||||| ||||| || || |||||||| ||||||||||||||||| ||| Sbjct: 101845 ccccaggaagagctgatttgaggataatcaatttagaggatatgctcgccttcttccttc 101904 Query: 135 ccgtccttagtttaggaaagtggaaagt-tttttcctt 171 ||||||||||||||||| |||||||||| ||||||||| Sbjct: 101905 ccgtccttagtttaggacagtggaaagtctttttcctt 101942
>dbj|BA000029.3| Oryza sativa (japonica cultivar-group) mitochondrial DNA, complete genome Length = 490520 Score = 139 bits (70), Expect = 1e-29 Identities = 140/158 (88%), Gaps = 4/158 (2%) Strand = Plus / Minus Query: 15 tttactcctatttattactcctggnaattatctatttatcgggnacagnataataccgca 74 |||||||||||||||||||||||| |||||||||||||||||| |||| | |||||| || Sbjct: 268444 tttactcctatttattactcctgg-aattatctatttatcggg-acag-acaatacccca 268388 Query: 75 ttctaggaagggctgagttgagtatgattaatttagaagatatgctcgccttcttatttc 134 | |||||| ||||| ||||| || || |||||||| ||||||||||||||||| ||| Sbjct: 268387 ccccaggaagagctgatttgaggataatcaatttagaggatatgctcgccttcttccttc 268328 Query: 135 ccgtccttagtttaggaaagtggaaagt-tttttcctt 171 ||||||||||||||||| |||||||||| ||||||||| Sbjct: 268327 ccgtccttagtttaggacagtggaaagtctttttcctt 268290
>dbj|D13098.1|RICMT02 Oryza sativa (japonica cultivar-group) mitochondrial atpH pseudogene, clone:pMTVSCT3 Length = 1584 Score = 139 bits (70), Expect = 1e-29 Identities = 140/158 (88%), Gaps = 4/158 (2%) Strand = Plus / Plus Query: 15 tttactcctatttattactcctggnaattatctatttatcgggnacagnataataccgca 74 |||||||||||||||||||||||| |||||||||||||||||| |||| | |||||| || Sbjct: 976 tttactcctatttattactcctgg-aattatctatttatcggg-acag-acaatacccca 1032 Query: 75 ttctaggaagggctgagttgagtatgattaatttagaagatatgctcgccttcttatttc 134 | |||||| ||||| ||||| || || |||||||| ||||||||||||||||| ||| Sbjct: 1033 ccccaggaagagctgatttgaggataatcaatttagaggatatgctcgccttcttccttc 1092 Query: 135 ccgtccttagtttaggaaagtggaaagt-tttttcctt 171 ||||||||||||||||| |||||||||| ||||||||| Sbjct: 1093 ccgtccttagtttaggacagtggaaagtctttttcctt 1130
>gb|DQ231548.1| Brassica rapa subsp. pekinensis chloroplast sequence Length = 153482 Score = 133 bits (67), Expect = 8e-28 Identities = 151/184 (82%) Strand = Plus / Minus Query: 356 aagaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcactggccatc 415 ||||||||| ||||||||||| ||||| ||||||||| | |||||||||||| Sbjct: 12485 aagaggagattatatgaaaaatttaaccgattctttcgtttacttgggtcactggccatc 12426 Query: 416 cgctggcagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgt 475 ||| || ||||||||| ||||||||||||||||||||||||||| ||||||||||| ||| Sbjct: 12425 cgccgggagtttcgggtttaataccgatattttagcaacaaatccaataaatctaagtgt 12366 Query: 476 agtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctatttcaaga 535 ||| | ||||| |||| |||||||||||||||| ||||||| ||||||||| Sbjct: 12365 agtcttcggtgtattgatcttttttggaaagggagtgtgtgtgagttgttcatttcaaga 12306 Query: 536 atag 539 |||| Sbjct: 12305 atag 12302
>gb|DQ317523.1| Glycine max cultivar PI 437654 chloroplast, complete genome Length = 152218 Score = 133 bits (67), Expect = 8e-28 Identities = 123/143 (86%), Gaps = 1/143 (0%) Strand = Plus / Plus Query: 406 actggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaataa 465 ||||||||||||| || ||||||||| ||||||||||||||||||||||||||| ||||| Sbjct: 48542 actggccatccgccggaagtttcgggtttaataccgatattttagcaacaaatccaataa 48601 Query: 466 atctaactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtc 525 |||| | ||||||| | ||||| ||| |||||||||||||||||||||||| Sbjct: 48602 atcttagtgtagtgttaggtgtattggttttttttggaaagggagtgtgtgcgagttgtt 48661 Query: 526 tatttc-aagaatagattggatc 547 |||||| |||||||||||||||| Sbjct: 48662 tatttcaaagaatagattggatc 48684 Score = 40.1 bits (20), Expect = 9.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 652 aagaaccatagcatttcgcgactcattggtaa 683 |||||| |||||||||||||| | |||||||| Sbjct: 48801 aagaactatagcatttcgcgatttattggtaa 48832 Score = 40.1 bits (20), Expect = 9.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 361 gagagcatatgaaaaatgtaacccattctttc 392 |||| |||||||||||| ||||| |||||||| Sbjct: 48497 gagatcatatgaaaaatataaccgattctttc 48528
>gb|DQ069387.1| Nuphar advena ATP synthase CF0 B chain (atpF) gene, partial cds; chloroplast Length = 552 Score = 129 bits (65), Expect = 1e-26 Identities = 83/89 (93%) Strand = Plus / Plus Query: 404 tcactggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaat 463 ||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||| Sbjct: 36 tcactggccatccgccgggagtttcgggtttaataccgatattttagcaacaaatctaat 95 Query: 464 aaatctaactgtagtggttggtgttttga 492 |||||||| ||||||| ||||||| |||| Sbjct: 96 aaatctaagtgtagtgcttggtgtattga 124
>gb|DQ069389.1| Typha latifolia ATP synthase CF0 B chain (atpF) gene, partial cds; chloroplast Length = 558 Score = 127 bits (64), Expect = 5e-26 Identities = 82/88 (93%) Strand = Plus / Plus Query: 405 cactggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaata 464 |||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||| Sbjct: 37 cactggccatccgccgggagtttcgggtttaataccgatattttagcaacaaatctaata 96 Query: 465 aatctaactgtagtggttggtgttttga 492 ||||||| ||||||| ||||||| |||| Sbjct: 97 aatctaagtgtagtgattggtgtattga 124
>gb|AY521596.1| Cucumis sativus isolate GY-14, chloroplast sequence Length = 16653 Score = 125 bits (63), Expect = 2e-25 Identities = 112/131 (85%) Strand = Plus / Minus Query: 408 tggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaataaat 467 ||||||||||| | |||||||| ||||||||||||||||||||||||||| ||||||| Sbjct: 3343 tggccatccgccgagagtttcggatttaataccgatattttagcaacaaatccaataaat 3284 Query: 468 ctaactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtcta 527 |||| |||||| ||||||| |||| |||||||||||||||||||||||| || Sbjct: 3283 ctaagcgtagtgcttggtgtattgattttttttggaaagggagtgtgtgcgagttgttta 3224 Query: 528 tttcaagaata 538 ||||||||||| Sbjct: 3223 tttcaagaata 3213 Score = 85.7 bits (43), Expect = 2e-13 Identities = 61/67 (91%) Strand = Plus / Minus Query: 617 cgaattacttctgaataaattcagaaatcatatggaagaaccatagcatttcgcgactca 676 |||||||||||||| |||| ||||||||||| |||||||||||||||||||||| ||| Sbjct: 3153 cgaattacttctgacaaaatgaagaaatcatattgaagaaccatagcatttcgcgattca 3094 Query: 677 ttggtaa 683 ||||||| Sbjct: 3093 ttggtaa 3087 Score = 63.9 bits (32), Expect = 6e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 349 tatctataagaggagagcatatgaaaaatgtaacccattctttc 392 ||||||||| |||||| |||||||||||||||||| |||||||| Sbjct: 3402 tatctataaaaggagatcatatgaaaaatgtaaccgattctttc 3359
>emb|AJ970307.1| Cucumis sativus chloroplast complete genome Length = 155293 Score = 125 bits (63), Expect = 2e-25 Identities = 112/131 (85%) Strand = Plus / Minus Query: 408 tggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaataaat 467 ||||||||||| | |||||||| ||||||||||||||||||||||||||| ||||||| Sbjct: 13941 tggccatccgccgagagtttcggatttaataccgatattttagcaacaaatccaataaat 13882 Query: 468 ctaactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtcta 527 |||| |||||| ||||||| |||| |||||||||||||||||||||||| || Sbjct: 13881 ctaagcgtagtgcttggtgtattgattttttttggaaagggagtgtgtgcgagttgttta 13822 Query: 528 tttcaagaata 538 ||||||||||| Sbjct: 13821 tttcaagaata 13811 Score = 85.7 bits (43), Expect = 2e-13 Identities = 61/67 (91%) Strand = Plus / Minus Query: 617 cgaattacttctgaataaattcagaaatcatatggaagaaccatagcatttcgcgactca 676 |||||||||||||| |||| ||||||||||| |||||||||||||||||||||| ||| Sbjct: 13751 cgaattacttctgacaaaatgaagaaatcatattgaagaaccatagcatttcgcgattca 13692 Query: 677 ttggtaa 683 ||||||| Sbjct: 13691 ttggtaa 13685 Score = 63.9 bits (32), Expect = 6e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 349 tatctataagaggagagcatatgaaaaatgtaacccattctttc 392 ||||||||| |||||| |||||||||||||||||| |||||||| Sbjct: 14000 tatctataaaaggagatcatatgaaaaatgtaaccgattctttc 13957
>gb|DQ119058.1| Cucumis sativus cultivar Baekmibaekdadagi plastid, complete genome Length = 155527 Score = 125 bits (63), Expect = 2e-25 Identities = 112/131 (85%) Strand = Plus / Minus Query: 408 tggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaataaat 467 ||||||||||| | |||||||| ||||||||||||||||||||||||||| ||||||| Sbjct: 13933 tggccatccgccgagagtttcggatttaataccgatattttagcaacaaatccaataaat 13874 Query: 468 ctaactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtcta 527 |||| |||||| ||||||| |||| |||||||||||||||||||||||| || Sbjct: 13873 ctaagcgtagtgcttggtgtattgattttttttggaaagggagtgtgtgcgagttgttta 13814 Query: 528 tttcaagaata 538 ||||||||||| Sbjct: 13813 tttcaagaata 13803 Score = 85.7 bits (43), Expect = 2e-13 Identities = 61/67 (91%) Strand = Plus / Minus Query: 617 cgaattacttctgaataaattcagaaatcatatggaagaaccatagcatttcgcgactca 676 |||||||||||||| |||| ||||||||||| |||||||||||||||||||||| ||| Sbjct: 13743 cgaattacttctgacaaaatgaagaaatcatattgaagaaccatagcatttcgcgattca 13684 Query: 677 ttggtaa 683 ||||||| Sbjct: 13683 ttggtaa 13677 Score = 63.9 bits (32), Expect = 6e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 349 tatctataagaggagagcatatgaaaaatgtaacccattctttc 392 ||||||||| |||||| |||||||||||||||||| |||||||| Sbjct: 13992 tatctataaaaggagatcatatgaaaaatgtaaccgattctttc 13949
>dbj|AP000423.1| Arabidopsis thaliana chloroplast genomic DNA, complete sequence, strain:Columbia Length = 154478 Score = 125 bits (63), Expect = 2e-25 Identities = 150/184 (81%) Strand = Plus / Minus Query: 356 aagaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcactggccatc 415 ||||||||| ||||||||||| ||||| ||||||||| | |||||||||||| Sbjct: 12811 aagaggagattatatgaaaaatttaaccgattctttcgtttacttgggtcactggccatc 12752 Query: 416 cgctggcagtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgt 475 ||| || |||||||| ||||||||||||||||||||||||||| ||||||||||| ||| Sbjct: 12751 cgccgggagtttcggatttaataccgatattttagcaacaaatccaataaatctaagtgt 12692 Query: 476 agtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctatttcaaga 535 ||| | ||||| |||| |||||||||||||||| ||||||| ||||||||| Sbjct: 12691 agttttcggtgtattgatcttttttggaaagggagtgtgtgtgagttgttcatttcaaga 12632 Query: 536 atag 539 |||| Sbjct: 12631 atag 12628
>gb|DQ069388.1| Ranunculus macranthus ATP synthase CF0 B chain (atpF) gene, partial cds; chloroplast Length = 564 Score = 123 bits (62), Expect = 8e-25 Identities = 108/126 (85%) Strand = Plus / Plus Query: 404 tcactggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaat 463 ||||||||||||||| || |||||||| ||||||||||||||||||||||||||| ||| Sbjct: 36 tcactggccatccgccgggagtttcggatttaataccgatattttagcaacaaatccaat 95 Query: 464 aaatctaactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttg 523 |||||||| |||||| ||||||| |||| ||||||||||||||||||||||| Sbjct: 96 aaatctaagtgtagtccttggtgtattgattttttttggaaagggagtgtgtgcgagttg 155 Query: 524 tctatt 529 | |||| Sbjct: 156 tttatt 161
>emb|X05917.1|CHPSATPC Pea plastid genes rps2, atpI, atpH, atpF, atpA, trnR and trnG coding for ribosomal protein S2, one CF(1) and three CF(O) subunits of ATP synthase and tRNA-Arg and tRNA-Gly Length = 5865 Score = 123 bits (62), Expect = 8e-25 Identities = 109/126 (86%), Gaps = 1/126 (0%) Strand = Plus / Plus Query: 423 agtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtagtggtt 482 ||||||||| || |||||||||||||||||||||||||||||||||||| || |||| | Sbjct: 2553 agtttcgggtttgataccgatattttagcaacaaatctaataaatctaagtgcagtgcta 2612 Query: 483 ggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctatttc-aagaatagat 541 ||||| |||| |||||||||||||||||||||||| |||||| |||||||||| Sbjct: 2613 ggtgtattgattttttttggaaagggagtgtgtgcgagttgtttatttcaaagaatagat 2672 Query: 542 tggatc 547 |||||| Sbjct: 2673 tggatc 2678 Score = 56.0 bits (28), Expect = 2e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 652 aagaaccatagcatttcgcgactcattggtaa 683 ||||||||||||||||||||| |||||||||| Sbjct: 2765 aagaaccatagcatttcgcgattcattggtaa 2796
>gb|M57711.1|PEACPATPH Pea chloroplast ATP synthase CF0 subunit III (atpH) gene, complete cds Length = 1332 Score = 123 bits (62), Expect = 8e-25 Identities = 109/126 (86%), Gaps = 1/126 (0%) Strand = Plus / Plus Query: 423 agtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtagtggtt 482 ||||||||| || |||||||||||||||||||||||||||||||||||| || |||| | Sbjct: 1206 agtttcgggtttgataccgatattttagcaacaaatctaataaatctaagtgcagtgcta 1265 Query: 483 ggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctatttc-aagaatagat 541 ||||| |||| |||||||||||||||||||||||| |||||| |||||||||| Sbjct: 1266 ggtgtattgattttttttggaaagggagtgtgtgcgagttgtttatttcaaagaatagat 1325 Query: 542 tggatc 547 |||||| Sbjct: 1326 tggatc 1331
>emb|AJ010572.1|HVU010572 Hordeum vulgare chloroplast mRNA for ATP synthase CFO subunit I, partial Length = 130 Score = 123 bits (62), Expect = 8e-25 Identities = 62/62 (100%) Strand = Plus / Plus Query: 431 gcttaataccgatattttagcaacaaatctaataaatctaactgtagtggttggtgtttt 490 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 gcttaataccgatattttagcaacaaatctaataaatctaactgtagtggttggtgtttt 60 Query: 491 ga 492 || Sbjct: 61 ga 62
>ref|XM_481174.1| Oryza sativa (japonica cultivar-group), mRNA Length = 949 Score = 121 bits (61), Expect = 3e-24 Identities = 64/65 (98%) Strand = Plus / Minus Query: 298 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 357 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 936 aaaaagggcgagcgaagtaagtgatcaaaaaactttgttctttgttcgtcctatctataa 877 Query: 358 gagga 362 ||||| Sbjct: 876 gagga 872
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 121 bits (61), Expect = 3e-24 Identities = 64/65 (98%) Strand = Plus / Plus Query: 298 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 357 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 10366377 aaaaagggcgagcgaagtaagtgatcaaaaaactttgttctttgttcgtcctatctataa 10366436 Query: 358 gagga 362 ||||| Sbjct: 10366437 gagga 10366441 Score = 61.9 bits (31), Expect = 3e-06 Identities = 31/31 (100%) Strand = Plus / Minus Query: 163 tttttccttttattttaggaattttgggaac 193 ||||||||||||||||||||||||||||||| Sbjct: 3319432 tttttccttttattttaggaattttgggaac 3319402
>dbj|AP005731.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0091D16 Length = 174222 Score = 121 bits (61), Expect = 3e-24 Identities = 64/65 (98%) Strand = Plus / Plus Query: 298 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 357 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 67335 aaaaagggcgagcgaagtaagtgatcaaaaaactttgttctttgttcgtcctatctataa 67394 Query: 358 gagga 362 ||||| Sbjct: 67395 gagga 67399
>dbj|AK108117.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-139-C06, full insert sequence Length = 949 Score = 121 bits (61), Expect = 3e-24 Identities = 64/65 (98%) Strand = Plus / Minus Query: 298 aaaaagggcgagcgaagtaagtgatcgaaaaactttgttctttgttcgtcctatctataa 357 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 936 aaaaagggcgagcgaagtaagtgatcaaaaaactttgttctttgttcgtcctatctataa 877 Query: 358 gagga 362 ||||| Sbjct: 876 gagga 872
>gb|DQ069385.1| Acorus americanus ATP synthase CF0 B chain (atpF) gene, partial cds; chloroplast Length = 552 Score = 119 bits (60), Expect = 1e-23 Identities = 81/88 (92%) Strand = Plus / Plus Query: 405 cactggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaata 464 |||||||||| ||| || ||||||||| |||||||||||||||||||||||||||||||| Sbjct: 37 cactggccattcgccgggagtttcgggtttaataccgatattttagcaacaaatctaata 96 Query: 465 aatctaactgtagtggttggtgttttga 492 ||||||| ||||||| ||||||| |||| Sbjct: 97 aatctaagtgtagtgcttggtgtattga 124
>emb|AJ971663.1| Arabidopsis thaliana chloroplast partial atpF gene for ATPase I subu nit, exon 1, strain Wassilewskija (Ws-2) Length = 388 Score = 119 bits (60), Expect = 1e-23 Identities = 115/136 (84%) Strand = Plus / Plus Query: 404 tcactggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaat 463 ||||||||||||||| || |||||||| ||||||||||||||||||||||||||| ||| Sbjct: 19 tcactggccatccgccgggagtttcggatttaataccgatattttagcaacaaatccaat 78 Query: 464 aaatctaactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttg 523 |||||||| |||||| | ||||| |||| |||||||||||||||| |||||| Sbjct: 79 aaatctaagtgtagttttcggtgtattgatcttttttggaaagggagtgtgtgtgagttg 138 Query: 524 tctatttcaagaatag 539 | ||||||||||||| Sbjct: 139 ttcatttcaagaatag 154
>emb|AJ971662.1| Arabidopsis thaliana chloroplast partial atpF gene for ATPase I subu nit, exon 1, strain Cape Verde Islands (Cvi-0) Length = 384 Score = 119 bits (60), Expect = 1e-23 Identities = 115/136 (84%) Strand = Plus / Plus Query: 404 tcactggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaat 463 ||||||||||||||| || |||||||| ||||||||||||||||||||||||||| ||| Sbjct: 15 tcactggccatccgccgggagtttcggatttaataccgatattttagcaacaaatccaat 74 Query: 464 aaatctaactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttg 523 |||||||| |||||| | ||||| |||| |||||||||||||||| |||||| Sbjct: 75 aaatctaagtgtagttttcggtgtattgatcttttttggaaagggagtgtgtgtgagttg 134 Query: 524 tctatttcaagaatag 539 | ||||||||||||| Sbjct: 135 ttcatttcaagaatag 150
>dbj|AB098250.1| Nicotiana tomentosiformis atpF gene for ATP synthase I subunit, partial cds Length = 145 Score = 111 bits (56), Expect = 3e-21 Identities = 80/88 (90%) Strand = Plus / Plus Query: 405 cactggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaata 464 ||||||||||| || || ||||||||| ||||||||||||||||||||||||||| |||| Sbjct: 37 cactggccatctgccgggagtttcgggtttaataccgatattttagcaacaaatccaata 96 Query: 465 aatctaactgtagtggttggtgttttga 492 ||||||| ||||||| ||||||| |||| Sbjct: 97 aatctaagtgtagtgcttggtgtattga 124
>dbj|AB098229.1| Nicotiana sylvestris atpF gene for ATP synthase I subunit, partial cds Length = 141 Score = 111 bits (56), Expect = 3e-21 Identities = 80/88 (90%) Strand = Plus / Plus Query: 405 cactggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaata 464 ||||||||||| || || ||||||||| ||||||||||||||||||||||||||| |||| Sbjct: 37 cactggccatctgccgggagtttcgggtttaataccgatattttagcaacaaatccaata 96 Query: 465 aatctaactgtagtggttggtgttttga 492 ||||||| ||||||| ||||||| |||| Sbjct: 97 aatctaagtgtagtgcttggtgtattga 124
>gb|DQ069390.1| Yucca schidigera ATP synthase CF0 B chain (atpF) gene, partial cds; chloroplast Length = 552 Score = 109 bits (55), Expect = 1e-20 Identities = 105/124 (84%) Strand = Plus / Plus Query: 369 atgaaaaatgtaacccattctttcgnnnnnnnagctcactggccatccgctggcagtttc 428 ||||||||||||||| ||||||||| || || ||||||||||| || ||||| Sbjct: 1 atgaaaaatgtaaccgattctttcgtttccttaggccattggccatccgccgggagtttt 60 Query: 429 gggcttaataccgatattttagcaacaaatctaataaatctaactgtagtggttggtgtt 488 ||| ||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||| Sbjct: 61 gggtttaataccgatattttagcaacaaatccaataaatctaagtgtagtgcttggtgta 120 Query: 489 ttga 492 |||| Sbjct: 121 ttga 124
>dbj|AP002983.1| Lotus japonicus chloroplast DNA, complete genome Length = 150519 Score = 109 bits (55), Expect = 1e-20 Identities = 161/200 (80%), Gaps = 1/200 (0%) Strand = Plus / Plus Query: 349 tatctataagaggagagcatatgaaaaatgtaacccattctttcgnnnnnnnagctcact 408 |||| ||||||||||| |||||||||||| ||||| || ||||| | | ||| Sbjct: 47963 tatccataagaggagatcatatgaaaaatataaccgatcctttcccttgcttgggttact 48022 Query: 409 ggccatccgctggcagtttcgggcttaataccgatattttagcaacaaatctaataaatc 468 ||||||| || || |||||||| ||||||||||||||||||||||||||| |||||||| Sbjct: 48023 ggccatctgccggaagtttcggatttaataccgatattttagcaacaaatccaataaatc 48082 Query: 469 taactgtagtggttggtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctat 528 ||| | ||||| | ||||| |||| |||||||||||||||||||||||| | | Sbjct: 48083 taagtatagtgataggtgtattgattttttttggaaagggagtgtgtgcgagttgtttct 48142 Query: 529 ttc-aagaatagattggatc 547 ||| || ||||||||||||| Sbjct: 48143 ttcaaaaaatagattggatc 48162 Score = 50.1 bits (25), Expect = 0.010 Identities = 68/81 (83%), Gaps = 1/81 (1%) Strand = Plus / Plus Query: 603 gtgcacgatctcgacgaattacttctgaataaattcagaaatcatatggaagaaccatag 662 |||||||||| || ||||| ||||||||||||||| |||| | | ||||||||||| Sbjct: 48209 gtgcacgatcccg-cgaatgacttctgaataaattacgaaaaaagagttaagaaccatag 48267 Query: 663 catttcgcgactcattggtaa 683 ||||||| || |||||||||| Sbjct: 48268 catttcgtgattcattggtaa 48288
>gb|AC133450.6| Oryza sativa chromosome 3 BAC OSJNBa0072F13 genomic sequence, complete sequence Length = 150743 Score = 101 bits (51), Expect = 3e-18 Identities = 113/130 (86%), Gaps = 4/130 (3%) Strand = Plus / Minus Query: 507 ggagtgtgtgcgagttgtctatttcaagaatagattggatctatccggctgcactttaga 566 ||||||||||| | |||||||||| ||||||| ||||||||||||||||| | |||||| Sbjct: 126224 ggagtgtgtgcaaattgtctattttaagaatatattggatctatccggctatattttaga 126165 Query: 567 atattttttagtatttttcggataaataagaaaagggtgcacgatctcgacgaattactt 626 ||| ||| ||| ||||| |||| ||||||||||||||||||||||||||||| ||| | Sbjct: 126164 ata--tttcagtgttttt-ggat-aataagaaaagggtgcacgatctcgacgatttattc 126109 Query: 627 ctgaataaat 636 ||||| |||| Sbjct: 126108 ctgaacaaat 126099 Score = 63.9 bits (32), Expect = 6e-07 Identities = 47/52 (90%) Strand = Plus / Minus Query: 433 ttaataccgatattttagcaacaaatctaataaatctaactgtagtggttgg 484 |||||||| ||||||| | |||||||||||||||| ||||||| |||||||| Sbjct: 126324 ttaataccaatatttttgtaacaaatctaataaatttaactgtggtggttgg 126273
>gb|AC107207.9| Oryza sativa chromosome 3 BAC OSJNBb0106M04 genomic sequence, complete sequence Length = 133449 Score = 101 bits (51), Expect = 3e-18 Identities = 113/130 (86%), Gaps = 4/130 (3%) Strand = Plus / Minus Query: 507 ggagtgtgtgcgagttgtctatttcaagaatagattggatctatccggctgcactttaga 566 ||||||||||| | |||||||||| ||||||| ||||||||||||||||| | |||||| Sbjct: 38163 ggagtgtgtgcaaattgtctattttaagaatatattggatctatccggctatattttaga 38104 Query: 567 atattttttagtatttttcggataaataagaaaagggtgcacgatctcgacgaattactt 626 ||| ||| ||| ||||| |||| ||||||||||||||||||||||||||||| ||| | Sbjct: 38103 ata--tttcagtgttttt-ggat-aataagaaaagggtgcacgatctcgacgatttattc 38048 Query: 627 ctgaataaat 636 ||||| |||| Sbjct: 38047 ctgaacaaat 38038 Score = 63.9 bits (32), Expect = 6e-07 Identities = 47/52 (90%) Strand = Plus / Minus Query: 433 ttaataccgatattttagcaacaaatctaataaatctaactgtagtggttgg 484 |||||||| ||||||| | |||||||||||||||| ||||||| |||||||| Sbjct: 38263 ttaataccaatatttttgtaacaaatctaataaatttaactgtggtggttgg 38212
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 93.7 bits (47), Expect = 7e-16 Identities = 68/75 (90%) Strand = Plus / Plus Query: 609 gatctcgacgaattacttctgaataaattcagaaatcatatggaagaaccatagcatttc 668 |||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||| Sbjct: 9756058 gatctcgacgaattacttctgaataaatgtagaaatcatatgaaagatccatagcatttc 9756117 Query: 669 gcgactcattggtaa 683 | ||| |||||||| Sbjct: 9756118 gtgacctattggtaa 9756132 Score = 73.8 bits (37), Expect = 7e-10 Identities = 58/64 (90%), Gaps = 2/64 (3%) Strand = Plus / Minus Query: 132 ttcccgtccttagtttaggaaagtggaaagt--tttttccttttattttaggaattttgg 189 ||||||||||| |||||||| |||| ||| | ||||||||||||||||||||||||||| Sbjct: 5869924 ttcccgtcctttgtttaggatagtgaaaaatattttttccttttattttaggaattttgg 5869865 Query: 190 gaac 193 |||| Sbjct: 5869864 gaac 5869861
>dbj|AP005822.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0456E06 Length = 164353 Score = 93.7 bits (47), Expect = 7e-16 Identities = 68/75 (90%) Strand = Plus / Plus Query: 609 gatctcgacgaattacttctgaataaattcagaaatcatatggaagaaccatagcatttc 668 |||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||| Sbjct: 46300 gatctcgacgaattacttctgaataaatgtagaaatcatatgaaagatccatagcatttc 46359 Query: 669 gcgactcattggtaa 683 | ||| |||||||| Sbjct: 46360 gtgacctattggtaa 46374
>gb|AY885260.1| Thinopyrum elongatum ATP synthase CF0 subunit III (atpH) gene, complete cds; chloroplast Length = 448 Score = 79.8 bits (40), Expect = 1e-11 Identities = 75/83 (90%), Gaps = 3/83 (3%) Strand = Plus / Plus Query: 1 aatactttatttaatttactcctatttattactcctggnaattatctatttatcgggnac 60 ||||||||||||||||||||||||||||||| || ||| |||| ||||||||||||| || Sbjct: 356 aatactttatttaatttactcctatttattattcttgg-aattctctatttatcggg-ac 413 Query: 61 agnataataccgcattctaggaa 83 | |||||||| ||||||||||| Sbjct: 414 -ggataataccccattctaggaa 435
>gb|DQ069386.1| Ginkgo biloba ATP synthase CF0 B chain (atpF) gene, partial cds; chloroplast Length = 567 Score = 75.8 bits (38), Expect = 2e-10 Identities = 87/106 (82%) Strand = Plus / Plus Query: 424 gtttcgggcttaataccgatattttagcaacaaatctaataaatctaactgtagtggttg 483 ||||||| |||||||| ||||||||| |||||||||||||||||||| ||| ||| ||| Sbjct: 56 gtttcggttttaataccaatattttaggaacaaatctaataaatctaagtgtggtgcttg 115 Query: 484 gtgttttgannnnnnnnggaaagggagtgtgtgcgagttgtctatt 529 |||| ||| |||||||||||||||||| ||||| |||| Sbjct: 116 gtgtactgatctattttggaaagggagtgtgtgcgggttgtatatt 161
>dbj|AP003525.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0537F07 Length = 147724 Score = 73.8 bits (37), Expect = 7e-10 Identities = 58/64 (90%), Gaps = 2/64 (3%) Strand = Plus / Minus Query: 132 ttcccgtccttagtttaggaaagtggaaagt--tttttccttttattttaggaattttgg 189 ||||||||||| |||||||| |||| ||| | ||||||||||||||||||||||||||| Sbjct: 70699 ttcccgtcctttgtttaggatagtgaaaaatattttttccttttattttaggaattttgg 70640 Query: 190 gaac 193 |||| Sbjct: 70639 gaac 70636
>dbj|AK072439.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023111C14, full insert sequence Length = 2720 Score = 73.8 bits (37), Expect = 7e-10 Identities = 58/64 (90%), Gaps = 2/64 (3%) Strand = Plus / Plus Query: 132 ttcccgtccttagtttaggaaagtggaaagt--tttttccttttattttaggaattttgg 189 ||||||||||| |||||||| |||| ||| | ||||||||||||||||||||||||||| Sbjct: 1040 ttcccgtcctttgtttaggatagtgaaaaatattttttccttttattttaggaattttgg 1099 Query: 190 gaac 193 |||| Sbjct: 1100 gaac 1103
>dbj|AB168030.1| Polygonum cuspidatum var. terminalis chloroplast atpF gene, partial sequence, haplotype:G Length = 934 Score = 63.9 bits (32), Expect = 6e-07 Identities = 78/93 (83%), Gaps = 9/93 (9%) Strand = Plus / Minus Query: 599 aagggtgcacgatctcgacgaattacttctgaataaattcaga--------aatcatatg 650 ||||||||| ||||||| ||||||||||||||||||||| || ||||||||| Sbjct: 934 aagggtgcatgatctcg-cgaattacttctgaataaattacgaaatcatataatcatatg 876 Query: 651 gaagaaccatagcatttcgcgactcattggtaa 683 ||||||||||||||||||| || || ||||||| Sbjct: 875 gaagaaccatagcatttcgtgattcgttggtaa 843
>emb|AL662954.2|OSJN00155 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0005N02, complete sequence Length = 175163 Score = 61.9 bits (31), Expect = 3e-06 Identities = 31/31 (100%) Strand = Plus / Plus Query: 605 gcacgatctcgacgaattacttctgaataaa 635 ||||||||||||||||||||||||||||||| Sbjct: 126590 gcacgatctcgacgaattacttctgaataaa 126620
>dbj|AB168033.1| Polygonum cuspidatum var. terminalis chloroplast atpF gene, partial sequence, haplotype:J Length = 935 Score = 61.9 bits (31), Expect = 3e-06 Identities = 47/51 (92%), Gaps = 1/51 (1%) Strand = Plus / Minus Query: 599 aagggtgcacgatctcgacgaattacttctgaataaattcagaaatcatat 649 ||||||||| ||||||| ||||||||||||||||||||| |||||||||| Sbjct: 935 aagggtgcatgatctcg-cgaattacttctgaataaattacgaaatcatat 886
>dbj|AB168032.1| Polygonum cuspidatum var. terminalis chloroplast atpF gene, partial sequence, haplotype:I Length = 932 Score = 61.9 bits (31), Expect = 3e-06 Identities = 47/51 (92%), Gaps = 1/51 (1%) Strand = Plus / Minus Query: 599 aagggtgcacgatctcgacgaattacttctgaataaattcagaaatcatat 649 ||||||||| ||||||| ||||||||||||||||||||| |||||||||| Sbjct: 932 aagggtgcatgatctcg-cgaattacttctgaataaattacgaaatcatat 883
>dbj|AB168031.1| Polygonum cuspidatum var. terminalis chloroplast atpF gene, partial sequence, haplotype:H Length = 934 Score = 61.9 bits (31), Expect = 3e-06 Identities = 47/51 (92%), Gaps = 1/51 (1%) Strand = Plus / Minus Query: 599 aagggtgcacgatctcgacgaattacttctgaataaattcagaaatcatat 649 ||||||||| ||||||| ||||||||||||||||||||| |||||||||| Sbjct: 934 aagggtgcatgatctcg-cgaattacttctgaataaattacgaaatcatat 885
>dbj|AB168029.1| Polygonum cuspidatum var. terminalis chloroplast atpF gene, partial sequence, haplotype:F Length = 933 Score = 61.9 bits (31), Expect = 3e-06 Identities = 47/51 (92%), Gaps = 1/51 (1%) Strand = Plus / Minus Query: 599 aagggtgcacgatctcgacgaattacttctgaataaattcagaaatcatat 649 ||||||||| ||||||| ||||||||||||||||||||| |||||||||| Sbjct: 933 aagggtgcatgatctcg-cgaattacttctgaataaattacgaaatcatat 884
>dbj|AB168028.1| Polygonum cuspidatum var. terminalis chloroplast atpF gene, partial sequence, haplotype:E Length = 936 Score = 61.9 bits (31), Expect = 3e-06 Identities = 47/51 (92%), Gaps = 1/51 (1%) Strand = Plus / Minus Query: 599 aagggtgcacgatctcgacgaattacttctgaataaattcagaaatcatat 649 ||||||||| ||||||| ||||||||||||||||||||| |||||||||| Sbjct: 936 aagggtgcatgatctcg-cgaattacttctgaataaattacgaaatcatat 887
>dbj|AB168027.1| Polygonum cuspidatum var. terminalis chloroplast atpF gene, partial sequence, haplotype:D Length = 932 Score = 61.9 bits (31), Expect = 3e-06 Identities = 47/51 (92%), Gaps = 1/51 (1%) Strand = Plus / Minus Query: 599 aagggtgcacgatctcgacgaattacttctgaataaattcagaaatcatat 649 ||||||||| ||||||| ||||||||||||||||||||| |||||||||| Sbjct: 932 aagggtgcatgatctcg-cgaattacttctgaataaattacgaaatcatat 883
>dbj|AB168026.1| Polygonum cuspidatum var. terminalis chloroplast atpF gene, partial sequence, haplotype:C Length = 932 Score = 61.9 bits (31), Expect = 3e-06 Identities = 47/51 (92%), Gaps = 1/51 (1%) Strand = Plus / Minus Query: 599 aagggtgcacgatctcgacgaattacttctgaataaattcagaaatcatat 649 ||||||||| ||||||| ||||||||||||||||||||| |||||||||| Sbjct: 932 aagggtgcatgatctcg-cgaattacttctgaataaattacgaaatcatat 883
>dbj|AB168025.1| Polygonum cuspidatum var. terminalis chloroplast atpF gene, partial sequence, haplotype:B Length = 934 Score = 61.9 bits (31), Expect = 3e-06 Identities = 47/51 (92%), Gaps = 1/51 (1%) Strand = Plus / Minus Query: 599 aagggtgcacgatctcgacgaattacttctgaataaattcagaaatcatat 649 ||||||||| ||||||| ||||||||||||||||||||| |||||||||| Sbjct: 934 aagggtgcatgatctcg-cgaattacttctgaataaattacgaaatcatat 885
>dbj|AB168024.1| Polygonum cuspidatum var. terminalis chloroplast atpF gene, partial sequence, haplotype:A Length = 935 Score = 61.9 bits (31), Expect = 3e-06 Identities = 47/51 (92%), Gaps = 1/51 (1%) Strand = Plus / Minus Query: 599 aagggtgcacgatctcgacgaattacttctgaataaattcagaaatcatat 649 ||||||||| ||||||| ||||||||||||||||||||| |||||||||| Sbjct: 935 aagggtgcatgatctcg-cgaattacttctgaataaattacgaaatcatat 886
>dbj|AP004460.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0438H08 Length = 148626 Score = 61.9 bits (31), Expect = 3e-06 Identities = 31/31 (100%) Strand = Plus / Minus Query: 163 tttttccttttattttaggaattttgggaac 193 ||||||||||||||||||||||||||||||| Sbjct: 96999 tttttccttttattttaggaattttgggaac 96969
>gb|AY228468.1| Pinus Koraiensis chloroplast, complete genome Length = 116866 Score = 50.1 bits (25), Expect = 0.010 Identities = 28/29 (96%) Strand = Plus / Minus Query: 501 ggaaagggagtgtgtgcgagttgtctatt 529 |||||||||||||||||||||||| |||| Sbjct: 12618 ggaaagggagtgtgtgcgagttgtatatt 12590 Score = 42.1 bits (21), Expect = 2.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 349 tatctataagaggagagcatatgaaaaatgtaa 381 ||||||| || || ||||||||||||||||||| Sbjct: 12770 tatctatgaggggcgagcatatgaaaaatgtaa 12738
>dbj|D17510.1|PINCPTRPG Pinus thunbergii chloroplast DNA, complete sequence Length = 119707 Score = 50.1 bits (25), Expect = 0.010 Identities = 28/29 (96%) Strand = Plus / Minus Query: 501 ggaaagggagtgtgtgcgagttgtctatt 529 |||||||||||||||||||||||| |||| Sbjct: 12840 ggaaagggagtgtgtgcgagttgtatatt 12812 Score = 42.1 bits (21), Expect = 2.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 349 tatctataagaggagagcatatgaaaaatgtaa 381 ||||||| || ||||||| |||||||||||||| Sbjct: 12992 tatctatgaggggagagcgtatgaaaaatgtaa 12960
>dbj|AP008982.1| Triticum aestivum mitochondrial DNA, complete genome Length = 452528 Score = 48.1 bits (24), Expect = 0.038 Identities = 30/32 (93%) Strand = Plus / Plus Query: 455 aaatctaataaatctaactgtagtggttggtg 486 ||||| ||||||||||||| |||||||||||| Sbjct: 349033 aaatcgaataaatctaactatagtggttggtg 349064
>gb|AC185956.1| Populus trichocarpa clone Pop1-93N08, complete sequence Length = 73786 Score = 44.1 bits (22), Expect = 0.60 Identities = 25/26 (96%) Strand = Plus / Minus Query: 156 ggaaagttttttccttttattttagg 181 ||||||| |||||||||||||||||| Sbjct: 32423 ggaaagtgttttccttttattttagg 32398
>emb|AL583855.10| Human DNA sequence from clone RP11-16P15 on chromosome 10 Contains the 5' end of the MBL2 gene for mannose-binding lectin (protein C) 2 soluble (opsonic defect), complete sequence Length = 8604 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Minus Query: 146 ttaggaaagtggaaagtttttt 167 |||||||||||||||||||||| Sbjct: 4989 ttaggaaagtggaaagtttttt 4968
>gb|AC063922.23| Homo sapiens 3 BAC RP11-315A15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 97817 Score = 44.1 bits (22), Expect = 0.60 Identities = 25/26 (96%) Strand = Plus / Plus Query: 619 aattacttctgaataaattcagaaat 644 |||||||||| ||||||||||||||| Sbjct: 49231 aattacttctaaataaattcagaaat 49256
>gb|AY835656.1| Liparis mucosus 16S ribosomal RNA gene, partial sequence; mitochondrial Length = 482 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 161 gttttttccttttattttagg 181 ||||||||||||||||||||| Sbjct: 211 gttttttccttttattttagg 191
>gb|BC061457.1| Danio rerio potassium channel tetramerisation domain containing 10, mRNA (cDNA clone MGC:63846 IMAGE:3817604), complete cds Length = 3716 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 444 attttagcaacaaatctaata 464 ||||||||||||||||||||| Sbjct: 2312 attttagcaacaaatctaata 2332
>gb|AC164098.4| Mus musculus BAC clone RP23-341D24 from chromosome 1, complete sequence Length = 221754 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 6 tttatttaatttactcctatttatt 30 ||||||||||||| ||||||||||| Sbjct: 75532 tttatttaatttattcctatttatt 75556
>gb|AC146484.3| Pan troglodytes BAC clone CH251-454A18 from Y, complete sequence Length = 205077 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 372 aaaaatgtaacccattctttc 392 ||||||||||||||||||||| Sbjct: 37100 aaaaatgtaacccattctttc 37120
>emb|BX088723.4| Human DNA sequence from clone RP11-52E20 on chromosome X, complete sequence Length = 146782 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 162 ttttttccttttattttagga 182 ||||||||||||||||||||| Sbjct: 7278 ttttttccttttattttagga 7258
>emb|AL590072.7| Human DNA sequence from clone RP11-154J12 on chromosome 10, complete sequence Length = 112445 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 100 gattaatttagaagatatgct 120 ||||||||||||||||||||| Sbjct: 62625 gattaatttagaagatatgct 62605
>dbj|BS000561.1| Pan troglodytes chromosome Y clone:PTB-495J17, complete sequences Length = 130326 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 372 aaaaatgtaacccattctttc 392 ||||||||||||||||||||| Sbjct: 59011 aaaaatgtaacccattctttc 58991
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence Length = 23952694 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 372 aaaaatgtaacccattctttc 392 ||||||||||||||||||||| Sbjct: 23064080 aaaaatgtaacccattctttc 23064100
>gb|AC136451.9| Medicago truncatula clone mth2-17d19, complete sequence Length = 132473 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 564 agaatattttttagtattttt 584 ||||||||||||||||||||| Sbjct: 64834 agaatattttttagtattttt 64854
>gb|AC093527.2| Homo sapiens chromosome 5 clone RP11-252A23, complete sequence Length = 191035 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 365 gcatatgaaaaatgtaaccca 385 ||||||||||||||||||||| Sbjct: 90463 gcatatgaaaaatgtaaccca 90443
>emb|BX510366.5| Zebrafish DNA sequence from clone DKEY-189P24 in linkage group 5, complete sequence Length = 179350 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 444 attttagcaacaaatctaata 464 ||||||||||||||||||||| Sbjct: 41686 attttagcaacaaatctaata 41666 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 445 ttttagcaacaaatctaata 464 |||||||||||||||||||| Sbjct: 41913 ttttagcaacaaatctaata 41932
>gb|AC021085.3| Homo sapiens chromosome 5 clone CTC-573P17, complete sequence Length = 46105 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 365 gcatatgaaaaatgtaaccca 385 ||||||||||||||||||||| Sbjct: 44866 gcatatgaaaaatgtaaccca 44886
>gb|AC025761.5|AC025761 Homo sapiens chromosome 5 clone CTB-109C23, complete sequence Length = 112944 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 365 gcatatgaaaaatgtaaccca 385 ||||||||||||||||||||| Sbjct: 3291 gcatatgaaaaatgtaaccca 3311
>ref|NM_213478.1| Danio rerio potassium channel tetramerisation domain containing 10 (kctd10), mRNA Length = 3716 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 444 attttagcaacaaatctaata 464 ||||||||||||||||||||| Sbjct: 2312 attttagcaacaaatctaata 2332
>gb|AC010127.12| Homo sapiens BAC clone RP11-2I8 from 2, complete sequence Length = 190066 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 166 ttccttttattttaggaattt 186 ||||||||||||||||||||| Sbjct: 128348 ttccttttattttaggaattt 128328
>emb|AL391749.4|CNS06C8I Human chromosome 14 DNA sequence BAC R-233L14 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 195007 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 452 aacaaatctaataaatctaac 472 ||||||||||||||||||||| Sbjct: 130772 aacaaatctaataaatctaac 130752
>gb|AY539045.2| Liparis mucosus 16S large subunit ribosomal RNA gene, partial sequence; mitochondrial Length = 542 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 161 gttttttccttttattttagg 181 ||||||||||||||||||||| Sbjct: 259 gttttttccttttattttagg 239
>gb|AC133166.2| Mus musculus BAC clone RP24-186D13 from 1, complete sequence Length = 158206 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 6 tttatttaatttactcctatttatt 30 ||||||||||||| ||||||||||| Sbjct: 151252 tttatttaatttattcctatttatt 151276
>emb|AL845361.3| Mouse DNA sequence from clone RP23-315F13 on chromosome 2, complete sequence Length = 87379 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 555 ctgcactttagaatatttttt 575 ||||||||||||||||||||| Sbjct: 8059 ctgcactttagaatatttttt 8079
>emb|AL844151.3| Mouse DNA sequence from clone RP23-73O7 on chromosome X, complete sequence Length = 134513 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 560 ctttagaatattttttagtattttt 584 ||||||||||||||||| ||||||| Sbjct: 32484 ctttagaatattttttattattttt 32508
>ref|NM_104534.1| Arabidopsis thaliana unknown protein AT1G56570 mRNA, complete cds Length = 1836 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 444 attttagcaacaaatctaat 463 |||||||||||||||||||| Sbjct: 136 attttagcaacaaatctaat 155
>gb|AY178864.1| Adiantum capillus-veneris chloroplast, complete genome Length = 150568 Score = 40.1 bits (20), Expect = 9.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 501 ggaaagggagtgtgtgcgagttgtctat 528 |||||||| |||||||||||| |||||| Sbjct: 12481 ggaaagggggtgtgtgcgagtcgtctat 12454
>ref|XM_519619.1| PREDICTED: Pan troglodytes similar to platelet-derived growth factor receptor-like protein; platelet-derived growth factor-beta-like tumor suppressor (LOC464010), mRNA Length = 1890 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 tttattttaggaattttggg 190 |||||||||||||||||||| Sbjct: 1037 tttattttaggaattttggg 1018
>gb|U73916.1|LUU73916 Linum usitatissimum rust resistance protein M gene, complete cds Length = 6050 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 agttttttccttttatttta 179 |||||||||||||||||||| Sbjct: 4701 agttttttccttttatttta 4720
>gb|AC150888.5| Bos taurus BAC CH240-475A10 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 186059 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 gaaaaactttgttctttgtt 343 |||||||||||||||||||| Sbjct: 64417 gaaaaactttgttctttgtt 64398
>gb|AC150284.1| Latimeria menadoensis clone VMRC4-44H8, complete sequence Length = 187607 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 aagtggaaagttttttcctt 171 |||||||||||||||||||| Sbjct: 109144 aagtggaaagttttttcctt 109163
>gb|AC150283.1| Latimeria menadoensis clone VMRC4-188C23, complete sequence Length = 171414 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 aagtggaaagttttttcctt 171 |||||||||||||||||||| Sbjct: 126640 aagtggaaagttttttcctt 126659
>gb|AY593587.1| Membracis tectigera MEMTE 12S small subunit ribosomal RNA gene, partial sequence; mitochondrial Length = 308 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 aagacttaatctaaaagaaa 258 |||||||||||||||||||| Sbjct: 177 aagacttaatctaaaagaaa 158
>gb|AY593583.1| Membracis tectigera MEMELEP 12S small subunit ribosomal RNA gene, partial sequence; mitochondrial Length = 308 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 aagacttaatctaaaagaaa 258 |||||||||||||||||||| Sbjct: 177 aagacttaatctaaaagaaa 158
>gb|AY593582.1| Membracis dorsata MEDO 12S small subunit ribosomal RNA gene, partial sequence; mitochondrial Length = 308 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 aagacttaatctaaaagaaa 258 |||||||||||||||||||| Sbjct: 177 aagacttaatctaaaagaaa 158
>gb|AC068608.5| Mus musculus strain C57BL6/J chromosome 6 clone RP23-434O14, complete sequence Length = 191358 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 ctcctatttattactcctgg 38 |||||||||||||||||||| Sbjct: 100160 ctcctatttattactcctgg 100179
>gb|BC109657.1| Bos taurus golgi SNAP receptor complex member 1, mRNA (cDNA clone MGC:133734 IMAGE:8052166), complete cds Length = 1212 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 agttttttccttttatttta 179 |||||||||||||||||||| Sbjct: 1176 agttttttccttttatttta 1195
>gb|AC182655.2| Populus trichocarpa clone Pop1-121O5, complete sequence Length = 87839 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 156 ggaaagttttttccttttatttta 179 ||||||| |||||||||||||||| Sbjct: 29164 ggaaagtattttccttttatttta 29187
>emb|X70810.2|CLEGCGA Euglena gracilis chloroplast complete genome Length = 143171 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 565 gaatattttttagtattttt 584 |||||||||||||||||||| Sbjct: 76185 gaatattttttagtattttt 76166
>ref|NM_001038525.1| Bos taurus golgi SNAP receptor complex member 1 (GOSR1), mRNA Length = 1212 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 agttttttccttttatttta 179 |||||||||||||||||||| Sbjct: 1176 agttttttccttttatttta 1195
>ref|XM_740692.1| Plasmodium chabaudi chabaudi para-hydroxybenzoate--polyprenyltransferase (4-hydroxybenzoate octaprenyltransferase) (PC000068.05.0) partial mRNA Length = 1014 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 561 tttagaatattttttagtattttt 584 ||||||||||||| |||||||||| Sbjct: 714 tttagaatattttatagtattttt 691
>ref|XM_733771.1| Plasmodium chabaudi chabaudi hypothetical protein (PC300737.00.0) partial mRNA Length = 825 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 561 tttagaatattttttagtattttt 584 ||||||||||||| |||||||||| Sbjct: 717 tttagaatattttatagtattttt 694
>gb|AC109594.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0007P22, complete sequence Length = 148068 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 ttttccttttattttaggaa 183 |||||||||||||||||||| Sbjct: 99882 ttttccttttattttaggaa 99901
>emb|AL356096.11| Human DNA sequence from clone RP11-366K1 on chromosome 13 Contains a novel gene and a CpG island, complete sequence Length = 190101 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 371 gaaaaatgtaacccattctt 390 |||||||||||||||||||| Sbjct: 95863 gaaaaatgtaacccattctt 95882
>emb|AL353802.14| Human DNA sequence from clone RP4-662P1 on chromosome 1p31.3-32.3 Contains part of the gene for InaD-like protein (INADL), complete sequence Length = 143226 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 ttttccttttattttaggaa 183 |||||||||||||||||||| Sbjct: 60817 ttttccttttattttaggaa 60836
>emb|AL139340.12| Human DNA sequence from clone RP11-7F3 on chromosome 10, complete sequence Length = 187316 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 164 ttttccttttattttaggaatttt 187 |||||||||||||||||| ||||| Sbjct: 85044 ttttccttttattttagggatttt 85021
>emb|AL022319.2|HS172B20 Human DNA sequence from clone RP1-172B20 on chromosome 22q12.3-13.1 Contains the 3' part of the CACNA1I gene for voltage-dependent calcium channel, alpha 1I subunit, ESTs, STSs, GSSs and a putative CpG island, complete sequence Length = 213721 Score = 40.1 bits (20), Expect = 9.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 155 tggaaagttttttccttttattttagga 182 ||||||||||||| ||||||||| |||| Sbjct: 178278 tggaaagtttttttcttttatttcagga 178305
>emb|AL604031.10| Mouse DNA sequence from clone RP23-24O5 on chromosome 11 Contains a ribosomal protein L13 (Rpl13) pseudogene, a novel gene and two CpG islands, complete sequence Length = 215675 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 566 aatattttttagtatttttc 585 |||||||||||||||||||| Sbjct: 163361 aatattttttagtatttttc 163380
>emb|AL596169.1| Listeria innocua Clip11262 complete genome, segment 7/12 Length = 239050 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 566 aatattttttagtatttttcggat 589 ||||||||| |||||||||||||| Sbjct: 49327 aatatttttcagtatttttcggat 49350
>emb|BX088573.4| Mouse DNA sequence from clone RP23-78N10 on chromosome 4 Contains the 3' end of the Dbccr1 gene for deleted in bladder cancer chromosome region candidate 1 (human), complete sequence Length = 203865 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 acttaatctaaaagaaatta 261 |||||||||||||||||||| Sbjct: 91966 acttaatctaaaagaaatta 91947
>emb|BX649488.9| Zebrafish DNA sequence from clone DKEY-21O6 in linkage group 22, complete sequence Length = 183230 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 571 tttttagtatttttcggata 590 |||||||||||||||||||| Sbjct: 111445 tttttagtatttttcggata 111464
>gb|AC010061.6| Drosophila melanogaster 3L BAC RP98-11F16 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 165318 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 444 attttagcaacaaatctaataaat 467 ||||| |||||||||||||||||| Sbjct: 64883 atttttgcaacaaatctaataaat 64906
>dbj|AB220466.1| Macaca fascicularis mRNA, clone QflA-15761: similar to Homo sapiens platelet-derived growth factor receptor-like (PDGFRL), mRNA, NM_006207.1 Length = 2250 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 tttattttaggaattttggg 190 |||||||||||||||||||| Sbjct: 180 tttattttaggaattttggg 161
>gb|AC099782.2| Homo sapiens chromosome 3 clone RP11-852E15, complete sequence Length = 209772 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 gttttttccttttattttag 180 |||||||||||||||||||| Sbjct: 78655 gttttttccttttattttag 78636
>gb|AC006232.4| Arabidopsis thaliana chromosome 2 clone F10A12 map B68, complete sequence Length = 90341 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 164 ttttccttttattttaggaatttt 187 |||| ||||||||||||||||||| Sbjct: 65179 tttttcttttattttaggaatttt 65202
>gb|U76370.1|LUU76370 Linum usitatissimum mutant rust resistance protein M-X39 gene, partial cds Length = 2216 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 agttttttccttttatttta 179 |||||||||||||||||||| Sbjct: 867 agttttttccttttatttta 886
>emb|BX511250.8| Zebrafish DNA sequence from clone CH211-57K11 in linkage group 16, complete sequence Length = 189081 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 163 tttttccttttattttaggaattt 186 ||||| |||||||||||||||||| Sbjct: 39797 tttttgcttttattttaggaattt 39774
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 ttttccttttattttaggaa 183 |||||||||||||||||||| Sbjct: 22352934 ttttccttttattttaggaa 22352915
>gb|AC011891.3|AC011891 Homo sapiens clone CTD-2320J21, complete sequence Length = 73481 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 aagacttaatctaaaagaaa 258 |||||||||||||||||||| Sbjct: 50991 aagacttaatctaaaagaaa 50972
>gb|AC164979.2| Mus musculus BAC clone RP23-244J23 from chromosome 16, complete sequence Length = 202286 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 agattgaatctatttgcatt 283 |||||||||||||||||||| Sbjct: 46796 agattgaatctatttgcatt 46777
>gb|AC140918.1| Caenorhabditis briggsae cosmid CB020L07, complete sequence Length = 104788 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 162 ttttttccttttattttaggaatt 185 |||||||||||| ||||||||||| Sbjct: 74004 ttttttcctttttttttaggaatt 73981
>gb|AE000784.1| Borrelia burgdorferi B31 plasmid lp28-3, complete sequence Length = 28601 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 244 ttaatctaaaagaaattactagat 267 ||||||||||||||| |||||||| Sbjct: 14914 ttaatctaaaagaaaatactagat 14937
>gb|AC009323.4|AC009323 Arabidopsis thaliana chromosome I BAC F25P12 genomic sequence, complete sequence Length = 141748 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 444 attttagcaacaaatctaat 463 |||||||||||||||||||| Sbjct: 121406 attttagcaacaaatctaat 121387
>emb|CT027602.9| Mouse DNA sequence from clone RP24-359G24 on chromosome 16, complete sequence Length = 194283 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 agattgaatctatttgcatt 283 |||||||||||||||||||| Sbjct: 69248 agattgaatctatttgcatt 69229
>gb|AE003531.3| Drosophila melanogaster chromosome 3L, section 54 of 83 of the complete sequence Length = 271869 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 444 attttagcaacaaatctaataaat 467 ||||| |||||||||||||||||| Sbjct: 173334 atttttgcaacaaatctaataaat 173357
>emb|AL135858.3|CNS01DVJ Human chromosome 14 DNA sequence BAC R-667E4 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 164628 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 562 ttagaatattttttagtatt 581 |||||||||||||||||||| Sbjct: 91910 ttagaatattttttagtatt 91929
>gb|AY639959.1| Plasmodium coatneyi elongation factor Tu (TufA) gene, partial cds; apicoplast Length = 1154 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 7 ttatttaatttactcctatttatt 30 |||||||||||| ||||||||||| Sbjct: 602 ttatttaatttattcctatttatt 579
>dbj|AB088118.1| Mus musculus BRINP1 gene for BMP/retinoic acid-inducible neural-specific protein-1, exon 8, partial cds Length = 14938 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 acttaatctaaaagaaatta 261 |||||||||||||||||||| Sbjct: 7038 acttaatctaaaagaaatta 7019
>gb|AC005669.1|AC005669 Homo sapiens chromosome 3, clone hRPK.165_I_16, complete sequence Length = 176968 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 gttttttccttttattttag 180 |||||||||||||||||||| Sbjct: 14111 gttttttccttttattttag 14130
>gb|AY609716.1| Sus scrofa clone Clu_27406.scr.msk.p1.Contig1, mRNA sequence Length = 2201 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 tttattttaggaattttggg 190 |||||||||||||||||||| Sbjct: 275 tttattttaggaattttggg 256
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 ttttccttttattttaggaa 183 |||||||||||||||||||| Sbjct: 22662845 ttttccttttattttaggaa 22662826
>gb|AC146596.4| Mus musculus BAC clone RP24-175L7 from 13, complete sequence Length = 163780 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 ttttttccttttattttagg 181 |||||||||||||||||||| Sbjct: 55030 ttttttccttttattttagg 55049
>gb|AC160019.2| Gallus gallus BAC clone CH261-50H15 from chromosome unknown, complete sequence Length = 228494 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 cttagtttaggaaagtggaa 159 |||||||||||||||||||| Sbjct: 8378 cttagtttaggaaagtggaa 8397
>gb|AC158368.2| Gallus gallus BAC clone CH261-77E11 from chromosome unknown, complete sequence Length = 180657 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 cttagtttaggaaagtggaa 159 |||||||||||||||||||| Sbjct: 58530 cttagtttaggaaagtggaa 58511
>dbj|AP004638.1| Psilotum nudum chloroplast DNA, complete genome Length = 138829 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 505 agggagtgtgtgcgagttgt 524 |||||||||||||||||||| Sbjct: 18311 agggagtgtgtgcgagttgt 18292
>gb|AE017262.2| Listeria monocytogenes str. 4b F2365, complete genome Length = 2905187 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 566 aatattttttagtatttttcggat 589 ||||||||| |||||||||||||| Sbjct: 1575564 aatatttttcagtatttttcggat 1575587
>dbj|AP006360.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT42D17, TM0108, complete sequence Length = 117124 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 aagttttttccttttatttt 178 |||||||||||||||||||| Sbjct: 11257 aagttttttccttttatttt 11238
>dbj|AP004516.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT04F23, TM0044b, complete sequence Length = 20786 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 ggaaagtggaaagttttttc 168 |||||||||||||||||||| Sbjct: 1179 ggaaagtggaaagttttttc 1198
>gb|M12109.1|EGRCPRBCL E.gracilis chloroplast ribulose-1,5-bisphosphate carboxylase large subunit (rbcL) gene, complete cds Length = 6225 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 565 gaatattttttagtattttt 584 |||||||||||||||||||| Sbjct: 6144 gaatattttttagtattttt 6163
>emb|AL773586.6| Mouse DNA sequence from clone RP23-18P19 on chromosome 2, complete sequence Length = 208141 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 255 gaaattactagattgaatct 274 |||||||||||||||||||| Sbjct: 38759 gaaattactagattgaatct 38740
>emb|AL928966.3| Mouse DNA sequence from clone RP24-388A9 on chromosome 2, complete sequence Length = 173369 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 159 aagttttttccttttattttagga 182 ||||||| |||||||||||||||| Sbjct: 100759 aagttttatccttttattttagga 100782 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 159 aagttttttccttttattttagga 182 ||||||| |||||||||||||||| Sbjct: 74933 aagttttatccttttattttagga 74956 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,686,854 Number of Sequences: 3902068 Number of extensions: 7686854 Number of successful extensions: 180329 Number of sequences better than 10.0: 200 Number of HSP's better than 10.0 without gapping: 206 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 178368 Number of HSP's gapped (non-prelim): 1833 length of query: 683 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 660 effective length of database: 17,143,297,704 effective search space: 11314576484640 effective search space used: 11314576484640 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
