>UNC89_CAEEL (O01761) Muscle M-line assembly protein unc-89 (Uncoordinated protein|
            89)
          Length = 8081

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 21/54 (38%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
 Frame = +3

Query: 90   ERPKSIIQIPRKKKKKHHSDDAEDS---TCRKPRKPASQQG*LPVAPKASKQAS 242
            E PK +I   RKKKK    D  E S   T  KP  P  + G    +PK    AS
Sbjct: 1361 ELPKEVIDSDRKKKKSPSPDKKEKSPEKTEEKPASPTKKTGEEVKSPKEKSPAS 1414

>RT22_HUMAN (P82650) Mitochondrial 28S ribosomal protein S22 (S22mt) (MRP-S22)|
          Length = 360

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 18/55 (32%), Positives = 21/55 (38%)
 Frame = +2

Query: 266 CFSERARCMHTQLPLPFPHALTSLPVSLPHXXXXXXXESSGRPTAKKPTIEQESI 430
           CF  R +  H  L  P P    S  + LP          SG P  KKPT   E +
Sbjct: 24  CFRARIQPWHGGLLQPLP---CSFEMGLPRRRFSSEAAESGSPETKKPTFMDEEV 75

>YNCB_ECOLI (P76113) Putative NADP-dependent oxidoreductase yncB (EC 1.-.-.-)|
          Length = 353

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 22/75 (29%), Positives = 37/75 (49%)
 Frame = -1

Query: 483 STSGNILQMPGDK*FRGQIDSCSIVGFLAVGRPEDSVVVVVAACGRETGSEVKACGKGRG 304
           S S  +L MPG   + G +D         +G+P++   +VVAA     G+ V   GK +G
Sbjct: 132 SWSLGVLGMPGFTAYMGLLD---------IGQPKEGETLVVAAATGPVGATVGQIGKLKG 182

Query: 303 SCVCMHLARSEKQCK 259
            C  + +A   ++C+
Sbjct: 183 -CRVVGVAGGAEKCR 196

>H1O_CHITH (Q07134) Histone H1, orphon|
          Length = 244

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
 Frame = +3

Query: 69  PSIKMKYERPKSIIQIPRKKKKKHHSDDAEDSTCRKP--RKPASQQG*LPVAPKASKQAS 242
           P+ K   ++PK +   P+ K  K      E    +KP  +KP +++     A  A+K+  
Sbjct: 127 PAAKKVEKKPKKVPSTPKPKTTKPKRVTGEKKVVKKPAAKKPEAKKA-TKAAKPATKKVV 185

Query: 243 ALPFSLCTAFPSERGA 290
           A P S   A P  + A
Sbjct: 186 AKPASKKAAAPKPKAA 201

>YL079_MIMIV (Q5UPF5) Putative transposase L79|
          Length = 520

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +3

Query: 12  KGKLQLQIE*NKVKQGNFCPSIKMKYERPKSIIQIPRKKKKKHHSD 149
           K K  + IE N  K+G FCP++  K E  K +  I +    ++ SD
Sbjct: 252 KRKKIIIIEANFFKKGTFCPTVFPKMESSKPLTMIDKTVTLQYDSD 297


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,753,567
Number of Sequences: 219361
Number of extensions: 1389659
Number of successful extensions: 4454
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4450
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6598423128
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)