ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd16a18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 198 2e-47
2dbj|AP003220.6| Oryza sativa (japonica cultivar-group) genomic D... 198 2e-47
3dbj|AK073989.1| Oryza sativa (japonica cultivar-group) cDNA clon... 198 2e-47
4dbj|AK073791.1| Oryza sativa (japonica cultivar-group) cDNA clon... 198 2e-47
5dbj|AK065930.1| Oryza sativa (japonica cultivar-group) cDNA clon... 198 2e-47
6ref|NM_192924.1| Oryza sativa (japonica cultivar-group), predic... 192 1e-45
7dbj|AK062211.1| Oryza sativa (japonica cultivar-group) cDNA clon... 190 4e-45
8gb|AY107783.1| Zea mays PCO129679 mRNA sequence 84 7e-13
9ref|XM_475950.1| Oryza sativa (japonica cultivar-group), predic... 48 0.039
10gb|AC098573.2| Oryza sativa (japonica cultivar-group) chromosome... 48 0.039
11dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.039
12dbj|AK069254.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.039
13gb|AC134929.2| Oryza sativa (japonica cultivar-group) chromosome... 48 0.039
14gb|AC096567.3| Homo sapiens BAC clone RP11-293A4 from 4, complet... 44 0.62
15emb|AL935127.9| Mouse DNA sequence from clone RP23-431O5 on chro... 44 0.62
16emb|BX511123.10| Zebrafish DNA sequence from clone DKEY-201I6 in... 42 2.4
17gb|AC025571.20| Homo sapiens 3 BAC RP11-515C21 (Roswell Park Can... 42 2.4
18gb|AC146609.3| Mus musculus BAC clone RP23-162K11 from chromosom... 40 9.6
19gb|AC126436.3| Mus musculus BAC clone RP24-171P6 from chromosome... 40 9.6
20gb|AC125169.4| Mus musculus BAC clone RP24-464B24 from chromosom... 40 9.6
21ref|XM_800085.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 9.6
22gb|AC124567.4| Mus musculus BAC clone RP23-145E22 from 6, comple... 40 9.6
23gb|AC025048.8| Homo sapiens chromosome 17, clone CTD-2319I12, co... 40 9.6
24dbj|AK091299.1| Homo sapiens cDNA FLJ33980 fis, clone DFNES2004383 40 9.6
25gb|AC130797.5| Chlamydomonas reinhardtii clone cr-1j6b, complete... 40 9.6
26gb|AF052695.1|AF052695 Rattus norvegicus cell cycle protein p55C... 40 9.6
27ref|XM_938892.1| PREDICTED: Homo sapiens similar to cystin 1 (LO... 40 9.6
28gb|AC163708.3| Gallus gallus BAC clone CH261-58P10 from chromoso... 40 9.6
29gb|AC027058.9| Homo sapiens chromosome 4, clone RP11-481K13, com... 40 9.6
30gb|AC104794.4| Homo sapiens BAC clone RP11-254F7 from 2, complet... 40 9.6
31gb|AC153603.3| Mus musculus 6 BAC RP23-315I7 (Roswell Park Cance... 40 9.6
32gb|AC171008.2| Gallus gallus BAC clone CH261-169D8 from chromoso... 40 9.6
33gb|AC134246.4| Mus musculus BAC clone RP23-199B2 from 3, complet... 40 9.6
34gb|AC140403.3| Mus musculus BAC clone RP23-144M22 from 15, compl... 40 9.6 
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  198 bits (100), Expect = 2e-47
 Identities = 244/292 (83%)
 Strand = Plus / Plus

                                                                            
Query: 397      ttggccactagtacatctgcgacacgccgtagggaacaacaccgaccttcctgtgaccac 456
                |||| ||||| ||||||  ||||| |||||||||||||||||||||||| |||||  |||
Sbjct: 25148726 ttgggcactaatacatcctcgacatgccgtagggaacaacaccgacctttctgtgcgcac 25148785

                                                                            
Query: 457      ttgccgccacccctgatgtggttggagccatgccgttaagggatctcgagtataggtttg 516
                |||| ||||| || |  |  || | ||| | ||| || || ||||||| |||||||||||
Sbjct: 25148786 ttgctgccactcccgcagcagtagcagcgaggccattgagagatctcgtgtataggtttg 25148845

                                                                            
Query: 517      attctgctgatagcctatcggaagaacccctttttggcactgctgattgatggaagggtg 576
                  ||||||| || ||| ||||| ||| | ||||| ||| || ||||| ||||||| || |
Sbjct: 25148846 tctctgctgctaacctttcggacgaatcgcttttcggccctcctgatagatggaacgggg 25148905

                                                                            
Query: 577      gtgctctcatgtccagagcaacatcaggcacagttgagctgtttgcgcaagcataggcct 636
                ||||||||||||||||||||||||||| |||||| |  |||||||||||||  |||||||
Sbjct: 25148906 gtgctctcatgtccagagcaacatcagtcacagtggcactgtttgcgcaagtgtaggcct 25148965

                                                                    
Query: 637      gctggtgcagcgtatacatttcggcctgcgatggctcggagcaagctgactt 688
                ||||||||||||||||| |||||||||||||  |||| || |||||||||||
Sbjct: 25148966 gctggtgcagcgtatacctttcggcctgcgacagctcagaacaagctgactt 25149017



 Score = 48.1 bits (24), Expect = 0.039
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                        
Query: 138      gctcagattacaagccactggact 161
                ||||||||||||||||||||||||
Sbjct: 25148406 gctcagattacaagccactggact 25148429
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>dbj|AP003220.6| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBb0035I14
          Length = 117919

 Score =  198 bits (100), Expect = 2e-47
 Identities = 244/292 (83%)
 Strand = Plus / Plus

                                                                         
Query: 397   ttggccactagtacatctgcgacacgccgtagggaacaacaccgaccttcctgtgaccac 456
             |||| ||||| ||||||  ||||| |||||||||||||||||||||||| |||||  |||
Sbjct: 14735 ttgggcactaatacatcctcgacatgccgtagggaacaacaccgacctttctgtgcgcac 14794

                                                                         
Query: 457   ttgccgccacccctgatgtggttggagccatgccgttaagggatctcgagtataggtttg 516
             |||| ||||| || |  |  || | ||| | ||| || || ||||||| |||||||||||
Sbjct: 14795 ttgctgccactcccgcagcagtagcagcgaggccattgagagatctcgtgtataggtttg 14854

                                                                         
Query: 517   attctgctgatagcctatcggaagaacccctttttggcactgctgattgatggaagggtg 576
               ||||||| || ||| ||||| ||| | ||||| ||| || ||||| ||||||| || |
Sbjct: 14855 tctctgctgctaacctttcggacgaatcgcttttcggccctcctgatagatggaacgggg 14914

                                                                         
Query: 577   gtgctctcatgtccagagcaacatcaggcacagttgagctgtttgcgcaagcataggcct 636
             ||||||||||||||||||||||||||| |||||| |  |||||||||||||  |||||||
Sbjct: 14915 gtgctctcatgtccagagcaacatcagtcacagtggcactgtttgcgcaagtgtaggcct 14974

                                                                 
Query: 637   gctggtgcagcgtatacatttcggcctgcgatggctcggagcaagctgactt 688
             ||||||||||||||||| |||||||||||||  |||| || |||||||||||
Sbjct: 14975 gctggtgcagcgtatacctttcggcctgcgacagctcagaacaagctgactt 15026



 Score = 48.1 bits (24), Expect = 0.039
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 138   gctcagattacaagccactggact 161
             ||||||||||||||||||||||||
Sbjct: 14415 gctcagattacaagccactggact 14438
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>dbj|AK073989.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033071J24, full
            insert sequence
          Length = 1564

 Score =  198 bits (100), Expect = 2e-47
 Identities = 244/292 (83%)
 Strand = Plus / Minus

                                                                        
Query: 397  ttggccactagtacatctgcgacacgccgtagggaacaacaccgaccttcctgtgaccac 456
            |||| ||||| ||||||  ||||| |||||||||||||||||||||||| |||||  |||
Sbjct: 1068 ttgggcactaatacatcctcgacatgccgtagggaacaacaccgacctttctgtgcgcac 1009

                                                                        
Query: 457  ttgccgccacccctgatgtggttggagccatgccgttaagggatctcgagtataggtttg 516
            |||| ||||| || |  |  || | ||| | ||| || || ||||||| |||||||||||
Sbjct: 1008 ttgctgccactcccgcagcagtagcagcgaggccattgagagatctcgtgtataggtttg 949

                                                                        
Query: 517  attctgctgatagcctatcggaagaacccctttttggcactgctgattgatggaagggtg 576
              ||||||| || ||| ||||| ||| | ||||| ||| || ||||| ||||||| || |
Sbjct: 948  tctctgctgctaacctttcggacgaatcgcttttcggccctcctgatagatggaacgggg 889

                                                                        
Query: 577  gtgctctcatgtccagagcaacatcaggcacagttgagctgtttgcgcaagcataggcct 636
            ||||||||||||||||||||||||||| |||||| |  |||||||||||||  |||||||
Sbjct: 888  gtgctctcatgtccagagcaacatcagtcacagtggcactgtttgcgcaagtgtaggcct 829

                                                                
Query: 637  gctggtgcagcgtatacatttcggcctgcgatggctcggagcaagctgactt 688
            ||||||||||||||||| |||||||||||||  |||| || |||||||||||
Sbjct: 828  gctggtgcagcgtatacctttcggcctgcgacagctcagaacaagctgactt 777



 Score = 48.1 bits (24), Expect = 0.039
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 138  gctcagattacaagccactggact 161
            ||||||||||||||||||||||||
Sbjct: 1388 gctcagattacaagccactggact 1365
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>dbj|AK073791.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070B18, full
           insert sequence
          Length = 1040

 Score =  198 bits (100), Expect = 2e-47
 Identities = 244/292 (83%)
 Strand = Plus / Minus

                                                                       
Query: 397 ttggccactagtacatctgcgacacgccgtagggaacaacaccgaccttcctgtgaccac 456
           |||| ||||| ||||||  ||||| |||||||||||||||||||||||| |||||  |||
Sbjct: 568 ttgggcactaatacatcctcgacatgccgtagggaacaacaccgacctttctgtgcgcac 509

                                                                       
Query: 457 ttgccgccacccctgatgtggttggagccatgccgttaagggatctcgagtataggtttg 516
           |||| ||||| || |  |  || | ||| | ||| || || ||||||| |||||||||||
Sbjct: 508 ttgctgccactcccgcagcagtagcagcgaggccattgagagatctcgtgtataggtttg 449

                                                                       
Query: 517 attctgctgatagcctatcggaagaacccctttttggcactgctgattgatggaagggtg 576
             ||||||| || ||| ||||| ||| | ||||| ||| || ||||| ||||||| || |
Sbjct: 448 tctctgctgctaacctttcggacgaatcgcttttcggccctcctgatagatggaacgggg 389

                                                                       
Query: 577 gtgctctcatgtccagagcaacatcaggcacagttgagctgtttgcgcaagcataggcct 636
           ||||||||||||||||||||||||||| |||||| |  |||||||||||||  |||||||
Sbjct: 388 gtgctctcatgtccagagcaacatcagtcacagtggcactgtttgcgcaagtgtaggcct 329

                                                               
Query: 637 gctggtgcagcgtatacatttcggcctgcgatggctcggagcaagctgactt 688
           ||||||||||||||||| |||||||||||||  |||| || |||||||||||
Sbjct: 328 gctggtgcagcgtatacctttcggcctgcgacagctcagaacaagctgactt 277



 Score = 48.1 bits (24), Expect = 0.039
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 138 gctcagattacaagccactggact 161
           ||||||||||||||||||||||||
Sbjct: 888 gctcagattacaagccactggact 865
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>dbj|AK065930.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013045H01, full
            insert sequence
          Length = 2752

 Score =  198 bits (100), Expect = 2e-47
 Identities = 244/292 (83%)
 Strand = Plus / Minus

                                                                        
Query: 397  ttggccactagtacatctgcgacacgccgtagggaacaacaccgaccttcctgtgaccac 456
            |||| ||||| ||||||  ||||| |||||||||||||||||||||||| |||||  |||
Sbjct: 2245 ttgggcactaatacatcctcgacatgccgtagggaacaacaccgacctttctgtgcgcac 2186

                                                                        
Query: 457  ttgccgccacccctgatgtggttggagccatgccgttaagggatctcgagtataggtttg 516
            |||| ||||| || |  |  || | ||| | ||| || || ||||||| |||||||||||
Sbjct: 2185 ttgctgccactcccgcagcagtagcagcgaggccattgagagatctcgtgtataggtttg 2126

                                                                        
Query: 517  attctgctgatagcctatcggaagaacccctttttggcactgctgattgatggaagggtg 576
              ||||||| || ||| ||||| ||| | ||||| ||| || ||||| ||||||| || |
Sbjct: 2125 tctctgctgctaacctttcggacgaatcgcttttcggccctcctgatagatggaacgggg 2066

                                                                        
Query: 577  gtgctctcatgtccagagcaacatcaggcacagttgagctgtttgcgcaagcataggcct 636
            ||||||||||||||||||||||||||| |||||| |  |||||||||||||  |||||||
Sbjct: 2065 gtgctctcatgtccagagcaacatcagtcacagtggcactgtttgcgcaagtgtaggcct 2006

                                                                
Query: 637  gctggtgcagcgtatacatttcggcctgcgatggctcggagcaagctgactt 688
            ||||||||||||||||| |||||||||||||  |||| || |||||||||||
Sbjct: 2005 gctggtgcagcgtatacctttcggcctgcgacagctcagaacaagctgactt 1954



 Score = 48.1 bits (24), Expect = 0.039
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 138  gctcagattacaagccactggact 161
            ||||||||||||||||||||||||
Sbjct: 2565 gctcagattacaagccactggact 2542
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>ref|NM_192924.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1956

 Score =  192 bits (97), Expect = 1e-45
 Identities = 229/273 (83%)
 Strand = Plus / Minus

                                                                        
Query: 416  cgacacgccgtagggaacaacaccgaccttcctgtgaccacttgccgccacccctgatgt 475
            ||||| |||||||||||||||||||||||| |||||  ||||||| ||||| || |  | 
Sbjct: 1944 cgacatgccgtagggaacaacaccgacctttctgtgcgcacttgctgccactcccgcagc 1885

                                                                        
Query: 476  ggttggagccatgccgttaagggatctcgagtataggtttgattctgctgatagcctatc 535
             || | ||| | ||| || || ||||||| |||||||||||  ||||||| || ||| ||
Sbjct: 1884 agtagcagcgaggccattgagagatctcgtgtataggtttgtctctgctgctaacctttc 1825

                                                                        
Query: 536  ggaagaacccctttttggcactgctgattgatggaagggtggtgctctcatgtccagagc 595
            ||| ||| | ||||| ||| || ||||| ||||||| || ||||||||||||||||||||
Sbjct: 1824 ggacgaatcgcttttcggccctcctgatagatggaacgggggtgctctcatgtccagagc 1765

                                                                        
Query: 596  aacatcaggcacagttgagctgtttgcgcaagcataggcctgctggtgcagcgtatacat 655
            |||||||| |||||| |  |||||||||||||  |||||||||||||||||||||||| |
Sbjct: 1764 aacatcagtcacagtggcactgtttgcgcaagtgtaggcctgctggtgcagcgtatacct 1705

                                             
Query: 656  ttcggcctgcgatggctcggagcaagctgactt 688
            ||||||||||||  |||| || |||||||||||
Sbjct: 1704 ttcggcctgcgacagctcagaacaagctgactt 1672
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>dbj|AK062211.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-A05, full
           insert sequence
          Length = 1422

 Score =  190 bits (96), Expect = 4e-45
 Identities = 243/292 (83%)
 Strand = Plus / Minus

                                                                       
Query: 397 ttggccactagtacatctgcgacacgccgtagggaacaacaccgaccttcctgtgaccac 456
           |||| ||||| ||||||  ||||| |||||||||||||||||||||||| |||||  |||
Sbjct: 948 ttgggcactaatacatcctcgacatgccgtagggaacaacaccgacctttctgtgcgcac 889

                                                                       
Query: 457 ttgccgccacccctgatgtggttggagccatgccgttaagggatctcgagtataggtttg 516
           |||| ||||| || |  |  || | ||| | ||| || || ||||||| |||||||||||
Sbjct: 888 ttgctgccactcccgcagcagtagcagcgaggccattgagagatctcgtgtataggtttg 829

                                                                       
Query: 517 attctgctgatagcctatcggaagaacccctttttggcactgctgattgatggaagggtg 576
             ||||||| || ||| ||||| ||| | ||||| ||| || ||||| ||||||| || |
Sbjct: 828 tctctgctgctaacctttcggacgaatcgcttttcggccctcctgatagatggaacgggg 769

                                                                       
Query: 577 gtgctctcatgtccagagcaacatcaggcacagttgagctgtttgcgcaagcataggcct 636
           ||||||||||||||||||||||||||| |||||| |  |||||||||||||  |||||| 
Sbjct: 768 gtgctctcatgtccagagcaacatcagtcacagtggcactgtttgcgcaagtgtaggccc 709

                                                               
Query: 637 gctggtgcagcgtatacatttcggcctgcgatggctcggagcaagctgactt 688
           ||||||||||||||||| |||||||||||||  |||| || |||||||||||
Sbjct: 708 gctggtgcagcgtatacctttcggcctgcgacagctcagaacaagctgactt 657



 Score = 48.1 bits (24), Expect = 0.039
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 138  gctcagattacaagccactggact 161
            ||||||||||||||||||||||||
Sbjct: 1268 gctcagattacaagccactggact 1245
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>gb|AY107783.1| Zea mays PCO129679 mRNA sequence
          Length = 1461

 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 95/112 (84%), Gaps = 3/112 (2%)
 Strand = Plus / Minus

                                                                        
Query: 576  ggtgctctcatgtccagagcaacatcaggcacagttgagctgtttgcgcaagcatag--- 632
            |||||||||||||||||||||||||||| | | | ||  | ||||||||| ||||||   
Sbjct: 1021 ggtgctctcatgtccagagcaacatcagacgcggctgtacggtttgcgcaggcataggca 962

                                                                
Query: 633  gcctgctggtgcagcgtatacatttcggcctgcgatggctcggagcaagctg 684
            |||||||| |||||||| ||| |||| ||||| ||||||||| |||||||||
Sbjct: 961  gcctgctgatgcagcgtgtacctttcagcctgtgatggctcgcagcaagctg 910
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>ref|XM_475950.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2166

 Score = 48.1 bits (24), Expect = 0.039
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 580  ctctcatgtccagagcaacatcag 603
            ||||||||||||||||||||||||
Sbjct: 1990 ctctcatgtccagagcaacatcag 1967
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>gb|AC098573.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1651_G11,
             complete sequence
          Length = 112796

 Score = 48.1 bits (24), Expect = 0.039
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 580   ctctcatgtccagagcaacatcag 603
             ||||||||||||||||||||||||
Sbjct: 93577 ctctcatgtccagagcaacatcag 93554
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 48.1 bits (24), Expect = 0.039
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                        
Query: 580      ctctcatgtccagagcaacatcag 603
                ||||||||||||||||||||||||
Sbjct: 28774864 ctctcatgtccagagcaacatcag 28774841
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>dbj|AK069254.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023014J06, full
            insert sequence
          Length = 2614

 Score = 48.1 bits (24), Expect = 0.039
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 580  ctctcatgtccagagcaacatcag 603
            ||||||||||||||||||||||||
Sbjct: 2148 ctctcatgtccagagcaacatcag 2125
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>gb|AC134929.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0035N21, complete sequence
          Length = 128331

 Score = 48.1 bits (24), Expect = 0.039
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 580   ctctcatgtccagagcaacatcag 603
             ||||||||||||||||||||||||
Sbjct: 98603 ctctcatgtccagagcaacatcag 98626
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>gb|AC096567.3| Homo sapiens BAC clone RP11-293A4 from 4, complete sequence
          Length = 126750

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 82    cattccatcctttcccttctgt 103
             ||||||||||||||||||||||
Sbjct: 40331 cattccatcctttcccttctgt 40352
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>emb|AL935127.9| Mouse DNA sequence from clone RP23-431O5 on chromosome 2, complete
            sequence
          Length = 98852

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 256  agcaaagatgagcatcaaccct 277
            ||||||||||||||||||||||
Sbjct: 2712 agcaaagatgagcatcaaccct 2691
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>emb|BX511123.10| Zebrafish DNA sequence from clone DKEY-201I6 in linkage group 16,
              complete sequence
          Length = 159464

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 95     cccttctgtctcctcccctataaaa 119
              |||||||||||||||| ||||||||
Sbjct: 111845 cccttctgtctcctccgctataaaa 111869
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>gb|AC025571.20| Homo sapiens 3 BAC RP11-515C21 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 159902

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 89    tcctttcccttctgtctcctcccct 113
             |||||||||||| ||||||||||||
Sbjct: 37910 tcctttcccttccgtctcctcccct 37886
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>gb|AC146609.3| Mus musculus BAC clone RP23-162K11 from chromosome 14, complete sequence
          Length = 199215

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 93     ttcccttctgtctcctcccc 112
              ||||||||||||||||||||
Sbjct: 119443 ttcccttctgtctcctcccc 119424
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>gb|AC126436.3| Mus musculus BAC clone RP24-171P6 from chromosome 14, complete sequence
          Length = 169107

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 93    ttcccttctgtctcctcccc 112
             ||||||||||||||||||||
Sbjct: 19701 ttcccttctgtctcctcccc 19682
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>gb|AC125169.4| Mus musculus BAC clone RP24-464B24 from chromosome 7, complete sequence
          Length = 121385

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 184   tgcacacaggcagatacaac 203
             ||||||||||||||||||||
Sbjct: 54661 tgcacacaggcagatacaac 54680
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>ref|XM_800085.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053503571.19) partial mRNA
          Length = 2126

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 474 gtggttggagccatgccgttaagg 497
           ||||||| ||||||||||||||||
Sbjct: 67  gtggttgtagccatgccgttaagg 90
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>gb|AC124567.4| Mus musculus BAC clone RP23-145E22 from 6, complete sequence
          Length = 218924

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 174   ccgtccagtgtgcacacaggcaga 197
             |||| |||||||||||||||||||
Sbjct: 79494 ccgtgcagtgtgcacacaggcaga 79517
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>gb|AC025048.8| Homo sapiens chromosome 17, clone CTD-2319I12, complete sequence
          Length = 137921

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 100   ctgtctcctcccctataaaa 119
             ||||||||||||||||||||
Sbjct: 77363 ctgtctcctcccctataaaa 77344
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>dbj|AK091299.1| Homo sapiens cDNA FLJ33980 fis, clone DFNES2004383
          Length = 2311

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 91   ctttcccttctgtctcctcc 110
            ||||||||||||||||||||
Sbjct: 1519 ctttcccttctgtctcctcc 1500
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>gb|AC130797.5| Chlamydomonas reinhardtii clone cr-1j6b, complete sequence
          Length = 80650

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 459   gccgccacccctgatgtggt 478
             ||||||||||||||||||||
Sbjct: 12101 gccgccacccctgatgtggt 12120
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>gb|AF052695.1|AF052695 Rattus norvegicus cell cycle protein p55CDC gene, complete cds
          Length = 5617

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 104 ctcctcccctataaaagtaa 123
           ||||||||||||||||||||
Sbjct: 44  ctcctcccctataaaagtaa 25
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>ref|XM_938892.1| PREDICTED: Homo sapiens similar to cystin 1 (LOC649824), mRNA
          Length = 2818

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 91   ctttcccttctgtctcctcc 110
            ||||||||||||||||||||
Sbjct: 1660 ctttcccttctgtctcctcc 1641
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>gb|AC163708.3| Gallus gallus BAC clone CH261-58P10 from chromosome ul, complete
             sequence
          Length = 226873

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 83    attccatcctttcccttctgtctc 106
             ||||||||| ||||||||||||||
Sbjct: 82398 attccatccgttcccttctgtctc 82421
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>gb|AC027058.9| Homo sapiens chromosome 4, clone RP11-481K13, complete sequence
          Length = 155624

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 89    tcctttcccttctgtctcct 108
             ||||||||||||||||||||
Sbjct: 46057 tcctttcccttctgtctcct 46038
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>gb|AC104794.4| Homo sapiens BAC clone RP11-254F7 from 2, complete sequence
          Length = 114324

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 91    ctttcccttctgtctcctcc 110
             ||||||||||||||||||||
Sbjct: 39587 ctttcccttctgtctcctcc 39606
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>gb|AC153603.3| Mus musculus 6 BAC RP23-315I7 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 228174

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 174   ccgtccagtgtgcacacaggcaga 197
             |||| |||||||||||||||||||
Sbjct: 10586 ccgtgcagtgtgcacacaggcaga 10609
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>gb|AC171008.2| Gallus gallus BAC clone CH261-169D8 from chromosome ul, complete
             sequence
          Length = 170270

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 83    attccatcctttcccttctgtctc 106
             ||||||||| ||||||||||||||
Sbjct: 67058 attccatccgttcccttctgtctc 67035
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>gb|AC134246.4| Mus musculus BAC clone RP23-199B2 from 3, complete sequence
          Length = 206439

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 248    ggtcagtcagcaaagatgag 267
              ||||||||||||||||||||
Sbjct: 153454 ggtcagtcagcaaagatgag 153435
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>gb|AC140403.3| Mus musculus BAC clone RP23-144M22 from 15, complete sequence
          Length = 192144

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 90     cctttcccttctgtctcctcccct 113
              |||||||||||| |||||||||||
Sbjct: 116969 cctttcccttctctctcctcccct 116992


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,752,282
Number of Sequences: 3902068
Number of extensions: 4752282
Number of successful extensions: 86271
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 86140
Number of HSP's gapped (non-prelim): 131
length of query: 702
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 679
effective length of database: 17,143,297,704
effective search space: 11640299141016
effective search space used: 11640299141016
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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