ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd15l13 |
|---|---|
| Clone Library Name | barley_pub |
>PAP2_VACCV (P07617) Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase (EC| 2.1.1.57) (Poly(A) polymerase regulatory subunit) (Poly(A) polymerase small subunit) (PAP-S) (VP39) Length = 333 Score = 33.9 bits (76), Expect = 0.44 Identities = 17/70 (24%), Positives = 34/70 (48%) Frame = +1 Query: 115 QINLSLDYQNKKSENHNCNSTYNTIFRTPKFSTTRVLLSIIQQGILHSQNNPTLFNAKLP 294 ++ ++ DY N++ + + T++ F TT+ + +QQ I N PT K+ Sbjct: 246 KVVVNFDYPNQEYDYFHMYFMLRTVYCNKTFPTTKAKVLFLQQSIFRFLNIPTTSTEKV- 304 Query: 295 AGHQPVPRHV 324 H+P+ R + Sbjct: 305 -SHEPIQRKI 313
>PAP2_VACCC (P21033) Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase (EC| 2.1.1.57) (Poly(A) polymerase regulatory subunit) (Poly(A) polymerase small subunit) (PAP-S) (VP39) Length = 333 Score = 33.9 bits (76), Expect = 0.44 Identities = 17/70 (24%), Positives = 34/70 (48%) Frame = +1 Query: 115 QINLSLDYQNKKSENHNCNSTYNTIFRTPKFSTTRVLLSIIQQGILHSQNNPTLFNAKLP 294 ++ ++ DY N++ + + T++ F TT+ + +QQ I N PT K+ Sbjct: 246 KVVVNFDYPNQEYDYFHMYFMLRTVYCNKTFPTTKAKVLFLQQSIFRFLNIPTTSTEKV- 304 Query: 295 AGHQPVPRHV 324 H+P+ R + Sbjct: 305 -SHEPIQRKI 313
>PAP2_VACCA (Q76ZT1) Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase (EC| 2.1.1.57) (Poly(A) polymerase regulatory subunit) (Poly(A) polymerase small subunit) (PAP-S) (VP39) Length = 333 Score = 33.9 bits (76), Expect = 0.44 Identities = 17/70 (24%), Positives = 34/70 (48%) Frame = +1 Query: 115 QINLSLDYQNKKSENHNCNSTYNTIFRTPKFSTTRVLLSIIQQGILHSQNNPTLFNAKLP 294 ++ ++ DY N++ + + T++ F TT+ + +QQ I N PT K+ Sbjct: 246 KVVVNFDYPNQEYDYFHMYFMLRTVYCNKTFPTTKAKVLFLQQSIFRFLNIPTTSTEKV- 304 Query: 295 AGHQPVPRHV 324 H+P+ R + Sbjct: 305 -SHEPIQRKI 313
>SGS3_DROSI (P13729) Salivary glue protein Sgs-3 precursor| Length = 217 Score = 32.3 bits (72), Expect = 1.3 Identities = 19/59 (32%), Positives = 24/59 (40%) Frame = +2 Query: 8 PCTNTAKNSTKIVPLHGEKSHVKTIGTAIGCKQPRTRLIYHLTTRTRKVKITTATALTT 184 P T T K ST H +H P+T+ H T +T+ K TT T TT Sbjct: 105 PPTTTCKTSTTTTTTHKPTTHSTPKTKPTKHTTPKTKPTKHTTPKTKPTKHTTPTTTTT 163
>PAP2_VARV (P33052) Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase (EC| 2.1.1.57) (Poly(A) polymerase regulatory subunit) (Poly(A) polymerase small subunit) (PAP-S) (VP39) Length = 333 Score = 31.6 bits (70), Expect = 2.2 Identities = 16/66 (24%), Positives = 32/66 (48%) Frame = +1 Query: 115 QINLSLDYQNKKSENHNCNSTYNTIFRTPKFSTTRVLLSIIQQGILHSQNNPTLFNAKLP 294 ++ ++ DY N++ + + T++ F TT+ + +QQ I N PT K+ Sbjct: 246 KVVVNFDYPNQEYDYFHMYFMLRTVYCNKTFPTTKAKVLFLQQSIFRFLNIPTTSTEKV- 304 Query: 295 AGHQPV 312 H+P+ Sbjct: 305 -SHEPI 309
>ZBT20_HUMAN (Q9HC78) Zinc finger and BTB domain-containing protein 20 (Zinc| finger protein 288) (Dendritic-derived BTB/POZ zinc finger protein) Length = 741 Score = 30.4 bits (67), Expect = 4.9 Identities = 31/112 (27%), Positives = 45/112 (40%), Gaps = 9/112 (8%) Frame = +1 Query: 10 LYKHREELHQNCSVAWRKISCENYRNSDRLQTT---AYQINL-SLDYQNKKSEN-----H 162 ++ H E CS+ WR S ++Y + T AYQ ++ + + K S N H Sbjct: 597 MFVHTGEKPHQCSICWRSFSLKDYLIKHMVTHTGVRAYQCSICNKRFTQKSSLNVHMRLH 656 Query: 163 NCNSTYNTIFRTPKFSTTRVLLSIIQQGILHSQNNPTLFNAKLPAGHQPVPR 318 +Y KFS +L + LHS +N T PAG P R Sbjct: 657 RGEKSYECYICKKKFSHKTLLERHV---ALHSASNGT-----PPAGTPPGAR 700
>MYC2_SPEBE (Q64210) N-myc 2 proto-oncogene protein| Length = 454 Score = 30.4 bits (67), Expect = 4.9 Identities = 22/62 (35%), Positives = 27/62 (43%) Frame = +1 Query: 382 ARASARAPRVQICVVRRTSCWTVAGGGRAMIPQRSPGGATGDPRVEKLHVQDVLQTEVPH 561 ARA ARAP V V R + + A + R P G GD +V +D L EV Sbjct: 206 ARAPARAPAVGAAVARAAAPASAAVAAPPGLSSRPPNG--GDHKVLSTSGEDALSDEVDE 263 Query: 562 PE 567 E Sbjct: 264 EE 265
>DOCK4_MOUSE (P59764) Dedicator of cytokinesis protein 4| Length = 1978 Score = 30.0 bits (66), Expect = 6.3 Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 1/68 (1%) Frame = +1 Query: 289 LPAGHQPVPRHVVGAFAQLRPVHDLYEFP-CVARASARAPRVQICVVRRTSCWTVAGGGR 465 +P +P+ + +V F ++ + EFP C+ + P V R ++ +++ G Sbjct: 1574 VPQDMRPLHKKLVDQFFVMKSSFGIQEFPACIQASPVHFPNGSPRVCRNSAPASMSPDGT 1633 Query: 466 AMIPQRSP 489 +IP+RSP Sbjct: 1634 RVIPRRSP 1641
>DHX16_HUMAN (O60231) Putative pre-mRNA-splicing factor ATP-dependent RNA| helicase DHX16 (EC 3.6.1.-) (DEAH-box protein 16) (ATP-dependent RNA helicase #3) Length = 1041 Score = 29.6 bits (65), Expect = 8.3 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 3/72 (4%) Frame = +2 Query: 359 IFTNFPASLEPA---PEPPGSRYVLLEGPAVGPLLAAEGL*SHSDLRVVQPGTLE*RSFM 529 I+ N P+ ++ P PPG+R V++ L EG+ + V+ PG + +S+ Sbjct: 647 IYANLPSDMQARIFQPTPPGARKVVVATNIAETSLTIEGI-----IYVLDPGFCKQKSYN 701 Query: 530 YRTFFKPKSHTP 565 RT + + TP Sbjct: 702 PRTGMESLTVTP 713
>ACSL1_CAVPO (Q9JID6) Long-chain-fatty-acid--CoA ligase 1 (EC 6.2.1.3)| (Long-chain acyl-CoA synthetase 1) (LACS 1) (Palmitoyl-CoA ligase) Length = 698 Score = 29.6 bits (65), Expect = 8.3 Identities = 24/91 (26%), Positives = 31/91 (34%), Gaps = 24/91 (26%) Frame = +1 Query: 205 FSTTRVLLSIIQQGILHSQNNPTLFNAK------------------------LPAGHQPV 312 + R L + Q+GI S N P L + K L G Q Sbjct: 86 YDDVRTLYDVFQRGIQVSNNGPCLGSRKPDQPYEWLSYKQVEDLSECIGSALLQKGFQAS 145 Query: 313 PRHVVGAFAQLRPVHDLYEFPCVARASARAP 405 P +G FAQ RP + E C A + P Sbjct: 146 PDQFIGIFAQNRPEWVIIEQACFAYSMVVVP 176
>DHX16_PANTR (Q7YR39) Putative pre-mRNA-splicing factor ATP-dependent RNA| helicase DHX16 (EC 3.6.1.-) (DEAH-box protein 16) (ATP-dependent RNA helicase #3) Length = 1044 Score = 29.6 bits (65), Expect = 8.3 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 3/72 (4%) Frame = +2 Query: 359 IFTNFPASLEPA---PEPPGSRYVLLEGPAVGPLLAAEGL*SHSDLRVVQPGTLE*RSFM 529 I+ N P+ ++ P PPG+R V++ L EG+ + V+ PG + +S+ Sbjct: 650 IYANLPSDMQARIFQPTPPGARKVVVATNIAETSLTIEGI-----IYVLDPGFCKQKSYN 704 Query: 530 YRTFFKPKSHTP 565 RT + + TP Sbjct: 705 PRTGMESLTVTP 716 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 97,000,259 Number of Sequences: 219361 Number of extensions: 2082912 Number of successful extensions: 6657 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 6236 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6654 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6257125380 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
