ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd16a11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1REEP3_MOUSE (Q99KK1) Receptor expression-enhancing protein 3 28 9.0
2REEP3_HUMAN (Q6NUK4) Receptor expression-enhancing protein 3 28 9.0

>REEP3_MOUSE (Q99KK1) Receptor expression-enhancing protein 3|
          Length = 254

 Score = 27.7 bits (60), Expect = 9.0
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -1

Query: 135 RRPVVATAMIYPTYYSLRLVKVKW*VHICXMGKHYDKYTYIWI 7
           R  V+   M+YP YYS + VK K         K Y ++   WI
Sbjct: 8   RAVVLVFGMLYPAYYSYKAVKTK-------NVKEYVRWMMYWI 43



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>REEP3_HUMAN (Q6NUK4) Receptor expression-enhancing protein 3|
          Length = 255

 Score = 27.7 bits (60), Expect = 9.0
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -1

Query: 135 RRPVVATAMIYPTYYSLRLVKVKW*VHICXMGKHYDKYTYIWI 7
           R  V+   M+YP YYS + VK K         K Y ++   WI
Sbjct: 8   RAVVLVFGMLYPAYYSYKAVKTK-------NVKEYVRWMMYWI 43


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,472,929
Number of Sequences: 219361
Number of extensions: 319637
Number of successful extensions: 673
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 80,573,946
effective HSP length: 26
effective length of database: 74,870,560
effective search space used: 1796893440
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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