>PSBR_SPIOL (P10690) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 140

 Score =  135 bits (339), Expect = 1e-31
 Identities = 78/139 (56%), Positives = 90/139 (64%), Gaps = 13/139 (9%)
 Frame = -1

Query: 540 MAASMITSPIVAPTS-----------LPSLSRRGSSFAVVCSGGKKIKVDKPXXXXXXLT 394
           MA S+++S  + P+S           LPSLSR  +SF V  SG KKIKVDKP      + 
Sbjct: 1   MATSVMSSLSLKPSSFGVDTKSAVKGLPSLSRSSASFTVRASGVKKIKVDKPLGIGGGMK 60

Query: 393 V--DXDANGRKVGKKGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVT 220
           +    D++GRK   KGVYQFVDKYGANVDGYSPIY  EEW+ +GD YAGGTTGLLIWAVT
Sbjct: 61  LRDGVDSSGRKPTGKGVYQFVDKYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWAVT 120

Query: 219 XXXXXXXXXXLVYNTSALA 163
                     LVYNTSALA
Sbjct: 121 LAGLLAGGALLVYNTSALA 139

>PSBR_SOLTU (P06183) Photosystem II 10 kDa polypeptide, chloroplast precursor|
           (Light-inducible tissue-specific ST-LS1 protein)
          Length = 138

 Score =  133 bits (334), Expect = 4e-31
 Identities = 75/137 (54%), Positives = 88/137 (64%), Gaps = 11/137 (8%)
 Frame = -1

Query: 540 MAASMITSPIVAPT---------SLPSLSRRGSSFAVVCSGGKKIKVDKPXXXXXXLTV- 391
           MA+++++S  + PT          LPSL+R  SSF VV SG KK+K DKP      + + 
Sbjct: 1   MASTVMSSLSLKPTFTLEKTSVKGLPSLARSSSSFKVVASGVKKLKTDKPYGINGSMALR 60

Query: 390 -DXDANGRKVGKKGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXX 214
              DA+GRK   KGVYQ+VDKYGANVDGYSPIY  +EWS SGD Y GGTTGL IWAVT  
Sbjct: 61  DGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLV 120

Query: 213 XXXXXXXXLVYNTSALA 163
                   LVYNTSALA
Sbjct: 121 GILAGGALLVYNTSALA 137

>PSBR_LYCES (Q40163) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 138

 Score =  133 bits (334), Expect = 4e-31
 Identities = 75/137 (54%), Positives = 88/137 (64%), Gaps = 11/137 (8%)
 Frame = -1

Query: 540 MAASMITSPIVAPT---------SLPSLSRRGSSFAVVCSGGKKIKVDKPXXXXXXLTV- 391
           MA+++++S  + PT          LPSL+R  SSF VV SG KK+K DKP      + + 
Sbjct: 1   MASTVMSSLSLKPTFTLEKISVKGLPSLTRSSSSFKVVASGVKKLKTDKPYGINGSMALR 60

Query: 390 -DXDANGRKVGKKGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXX 214
              DA+GRK   KGVYQ+VDKYGANVDGYSPIY  +EWS SGD Y GGTTGL IWAVT  
Sbjct: 61  DGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLL 120

Query: 213 XXXXXXXXLVYNTSALA 163
                   LVYNTSALA
Sbjct: 121 GILAGGALLVYNTSALA 137

>PSBR_TOBAC (Q40519) Photosystem II 10 kDa polypeptide, chloroplast precursor|
           (PII10)
          Length = 136

 Score =  128 bits (321), Expect = 1e-29
 Identities = 69/117 (58%), Positives = 78/117 (66%), Gaps = 2/117 (1%)
 Frame = -1

Query: 507 APTSLPSLSRRGSSFAVVCSGGKKIKVDKPXXXXXXLTV--DXDANGRKVGKKGVYQFVD 334
           A   LPSL+R  SSF V  SG KK+K DKP      +++    DA+GRK   KGVYQFVD
Sbjct: 19  AVKGLPSLARSSSSFRVQASGVKKLKTDKPYGINGSMSLRDGVDASGRKQKGKGVYQFVD 78

Query: 333 KYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXXXXXXXXXXLVYNTSALA 163
           KYGANVDGYSPIY  ++WS SGD Y GGTTGL IWAVT          LV+NTSALA
Sbjct: 79  KYGANVDGYSPIYNTDDWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVFNTSALA 135

>PSBR_ARATH (P27202) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 140

 Score =  122 bits (307), Expect = 5e-28
 Identities = 72/139 (51%), Positives = 82/139 (58%), Gaps = 13/139 (9%)
 Frame = -1

Query: 540 MAASMITSPIV-----------APTSLPSLSRRGSSFAVVCSGGKKIKVDKPXXXXXXLT 394
           MAAS++ S +            A   LPSL+R   SF +V SG KKIK DKP      + 
Sbjct: 1   MAASVMLSSVTLKPAGFTVEKTAARGLPSLTRARPSFKIVASGVKKIKTDKPFGINGSMD 60

Query: 393 V--DXDANGRKVGKKGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVT 220
           +    DA+GRK    GVY++VDKYGANVDGYSPIY   EWS SGD Y GG TGL IWAVT
Sbjct: 61  LRDGVDASGRKGKGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVT 120

Query: 219 XXXXXXXXXXLVYNTSALA 163
                     LVYNTSALA
Sbjct: 121 LAGILAGGALLVYNTSALA 139

>PSBR_BRACM (P49108) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 141

 Score =  122 bits (305), Expect = 9e-28
 Identities = 73/140 (52%), Positives = 85/140 (60%), Gaps = 14/140 (10%)
 Frame = -1

Query: 540 MAASMITSPI-----------VAPTSLPSLSRRG-SSFAVVCSGGKKIKVDKPXXXXXXL 397
           MAAS++ S +           ++   LPSL+R   SSF +V SG KKIK DKP      +
Sbjct: 1   MAASVMLSSVTLKPAGFTVEKMSARGLPSLTRASPSSFRIVASGVKKIKTDKPFGVNGSM 60

Query: 396 TV--DXDANGRKVGKKGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAV 223
            +    DA+GRK    GVY+FVDKYGANVDGYSPIY  +EWS SGD Y GG TGL IWAV
Sbjct: 61  DLRDGVDASGRKGKGYGVYKFVDKYGANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAV 120

Query: 222 TXXXXXXXXXXLVYNTSALA 163
           T          LVYNTSALA
Sbjct: 121 TLAGILAGGALLVYNTSALA 140

>PSBR_HORVU (Q40070) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 138

 Score =  110 bits (276), Expect = 2e-24
 Identities = 64/137 (46%), Positives = 77/137 (56%), Gaps = 11/137 (8%)
 Frame = -1

Query: 540 MAASMITSPIVAPTSLPSLSRRG---------SSFAVVCSGGKKIKVDKPXXXXXXLTVD 388
           M+A ++ S  + P+S P L R            S  +V    KK++  +P      +   
Sbjct: 1   MSACVMASLALKPSSSPLLQRSKLGGVRPSARPSLVIVAKKAKKVQTAQPYGPGGGVAFK 60

Query: 387 X--DANGRKVGKKGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXX 214
              DA+GR    KGVYQF DKYGANVDGYSPIYTPEEWS SGD Y GG TGL +WAVT  
Sbjct: 61  EGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVTLA 120

Query: 213 XXXXXXXXLVYNTSALA 163
                   LVY+TSALA
Sbjct: 121 GILLGGALLVYSTSALA 137

>PSBR_WHEAT (P12358) Photosystem II 10 kDa polypeptide (Fragment)|
          Length = 24

 Score = 33.1 bits (74), Expect = 0.56
 Identities = 17/24 (70%), Positives = 17/24 (70%)
 Frame = -1

Query: 450 SGGKKIKVDKPXXXXXXLTVDXDA 379
           SGGKKIKVDKP      LTVD DA
Sbjct: 1   SGGKKIKVDKPLGLGGGLTVDIDA 24

>YLPM1_MOUSE (Q9R0I7) YLP motif-containing protein 1 (Nuclear protein ZAP3)|
          Length = 1386

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +2

Query: 353 PFLPTFLPLASMSTVKPPPS-PRGLSTLIFLPPLQTTAKEEPRRER 487
           P+LP   P  S   + PPPS P G  T I   PL++ AK +   ++
Sbjct: 183 PYLPPAQPSPSKPQLPPPPSIPSGNKTAIQQEPLESGAKNKTAEQK 228

>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)|
          Length = 5179

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 7/57 (12%)
 Frame = +2

Query: 311  PSTLAPYLSTNW*TPF-------LPTFLPLASMSTVKPPPSPRGLSTLIFLPPLQTT 460
            P T  P  +T   TP         PT  P+ + +TV P P+P G  T    P   TT
Sbjct: 1895 PPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTT 1951



 Score = 30.4 bits (67), Expect = 3.6
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +2

Query: 311  PSTLAPYLSTNW*TPFLPTFLPLASMSTVKPPPSPRGLSTLIFLPPLQTT 460
            P+T+    + N   P  PT  P+ + +TV P P+P G  T    P   TT
Sbjct: 1882 PTTMTTTTTEN---PTPPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTT 1928

>AAS_SHIFL (Q83JV7) AAS bifunctional protein [Includes:|
           2-acylglycerophosphoethanolamine acyltransferase (EC
           2.3.1.40) (Acyl-[acyl-carrier-protein]--phospholipid
           O-acyltransferase) (2-acyl-GPE acyltransferase);
           Acyl-[acyl-carrier-protein] synthetase (EC 6
          Length = 719

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +2

Query: 428 TLIFLPPLQTTAKEEPRRERDGRLVGATIGEVIMEAAIVSRSR 556
           TL  LPP Q    + PR     ++ G  + +++MEA +  R R
Sbjct: 161 TLHILPPTQVAMPDAPRARDRRKIAGEMLHQIMMEARMAVRPR 203

>AAS_ECOLI (P31119) AAS bifunctional protein [Includes:|
           2-acylglycerophosphoethanolamine acyltransferase (EC
           2.3.1.40) (Acyl-[acyl-carrier-protein]--phospholipid
           O-acyltransferase) (2-acyl-GPE acyltransferase);
           Acyl-[acyl-carrier-protein] synthetase (EC 6
          Length = 719

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +2

Query: 428 TLIFLPPLQTTAKEEPRRERDGRLVGATIGEVIMEAAIVSRSR 556
           TL  LPP Q    + PR     ++ G  + +++MEA +  R R
Sbjct: 161 TLHILPPTQVAMPDAPRARDRRKIAGEMLHQIMMEARMAVRPR 203

>AAS_ECOL6 (Q8FEA6) AAS bifunctional protein [Includes:|
           2-acylglycerophosphoethanolamine acyltransferase (EC
           2.3.1.40) (Acyl-[acyl-carrier-protein]--phospholipid
           O-acyltransferase) (2-acyl-GPE acyltransferase);
           Acyl-[acyl-carrier-protein] synthetase (EC 6
          Length = 719

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +2

Query: 428 TLIFLPPLQTTAKEEPRRERDGRLVGATIGEVIMEAAIVSRSR 556
           TL  LPP Q    + PR     ++ G  + +++MEA +  R R
Sbjct: 161 TLHILPPTQVEMPDAPRARDRRKIAGEMLHQIMMEARMAVRPR 203

>AAS_ECO57 (Q8X6J8) AAS bifunctional protein [Includes:|
           2-acylglycerophosphoethanolamine acyltransferase (EC
           2.3.1.40) (Acyl-[acyl-carrier-protein]--phospholipid
           O-acyltransferase) (2-acyl-GPE acyltransferase);
           Acyl-[acyl-carrier-protein] synthetase (EC 6
          Length = 719

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +2

Query: 428 TLIFLPPLQTTAKEEPRRERDGRLVGATIGEVIMEAAIVSRSR 556
           TL  LPP Q    + PR     ++ G  + +++MEA +  R R
Sbjct: 161 TLHILPPTQVEMPDAPRARDRRKIAGEMLHQIMMEARMAVRPR 203

>POLG_HCVBB (Q68749) Genome polyprotein [Contains: Core protein p21 (Capsid|
            protein C) (p21); Core protein p19; Envelope glycoprotein
            E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68)
            (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine
            protease/N
          Length = 3036

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 25/79 (31%), Positives = 33/79 (41%)
 Frame = +2

Query: 311  PSTLAPYLSTNW*TPFLPTFLPLASMSTVKPPPSPRGLSTLIFLPPLQTTAKEEPRRERD 490
            P  L P+   ++  P L T+           PP   G +    LPP  TT    PRR R 
Sbjct: 2285 PPALPPWARPDYNPPLLETW-----KRPDYQPPVVAGCA----LPPPGTTPVPPPRRRRA 2335

Query: 491  GRLVGATIGEVIMEAAIVS 547
              L  + +GE + E AI S
Sbjct: 2336 VVLDQSNVGEALKELAIKS 2354

>DMI1L_ORYSA (Q75LD5) Putative ion channel DMI1-like, chloroplast precursor|
          Length = 893

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 8/50 (16%)
 Frame = +2

Query: 398 KPPPSPRGLSTLIFLPPLQ--------TTAKEEPRRERDGRLVGATIGEV 523
           +PPP+PR  S     PP Q        TT    PRR RD R  G   G+V
Sbjct: 53  RPPPTPRSRSRSPLPPPEQQKQQQPPPTTPPPAPRR-RDPRYAGVRRGDV 101

>TOR1_YEAST (P35169) Phosphatidylinositol 3-kinase TOR1 (EC 2.7.1.137)|
            (PtdIns-3-kinase TOR1) (PI3-kinase TOR1) (PI3K TOR1)
          Length = 2470

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = -1

Query: 393  VDXDANGRKVGKKGVYQFVDKYGANVDGYSPIYTPE 286
            ++ D +  KV  + V + ++ +G N++GYS + TP+
Sbjct: 1043 LENDKSSDKVLSRRVLRLLESFGPNLEGYSHLITPK 1078

>PCLO_HUMAN (Q9Y6V0) Protein piccolo (Aczonin)|
          Length = 5183

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +2

Query: 374 PLASMSTVKPPPSPRGLSTLIFLPPLQTTAKEEPRRERDG 493
           P+    T KPP  P G +     PP Q T  E+P  E+ G
Sbjct: 352 PVQPPGTTKPPAQPLGPAK----PPAQQTGSEKPSSEQPG 387


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,520,218
Number of Sequences: 219361
Number of extensions: 829659
Number of successful extensions: 3030
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 2812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3018
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4700377760
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)