ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd15l01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1WDR6_HUMAN (Q9NNW5) WD-repeat protein 6 26 7.8
2SO1A4_RAT (O35913) Solute carrier organic anion transporter fami... 29 8.6

>WDR6_HUMAN (Q9NNW5) WD-repeat protein 6|
          Length = 1121

 Score = 26.2 bits (56), Expect(2) = 7.8
 Identities = 22/74 (29%), Positives = 25/74 (33%)
 Frame = -2

Query: 522 RGSILLLHTMPGFLNKCPCGGL*ACGVSRLSFADAGVCSGRALTGRQVSG*TDSLYNKMQ 343
           RGS+LL  + PG L     GG    G             G A TG        SL+ K  
Sbjct: 512 RGSVLLFPSRPGLLKDPGVGGKARAGAGAPVVGSGSSGGGNAFTGLGPVSTLPSLHGKQG 571

Query: 342 NALVIAIFGCEITT 301
              V    G   TT
Sbjct: 572 VTSVTCHGGYVYTT 585



 Score = 21.6 bits (44), Expect(2) = 7.8
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = -1

Query: 220 RALSCKELHWLQGIVVPHKRNLLVL 146
           R  SC+ ++WL G+ +    ++++L
Sbjct: 606 RQKSCRGMNWLAGLRIVPDGSMVIL 630



to top

>SO1A4_RAT (O35913) Solute carrier organic anion transporter family member 1A4|
           (Solute carrier family 21 member 5) (Sodium-independent
           organic anion-transporting polypeptide 2) (Brain digoxin
           carrier protein) (Brain-specific organic anion
           transporter) (OA
          Length = 661

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 7/37 (18%)
 Frame = -2

Query: 354 NKMQNALVIAIFGCEITTL-------YLERIIEGEEK 265
           NK+Q  L+IAIFGC I +L        L R I+ EEK
Sbjct: 507 NKLQYFLIIAIFGCFIYSLAGIPGYMVLLRCIKSEEK 543


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,963,921
Number of Sequences: 219361
Number of extensions: 1476172
Number of successful extensions: 3195
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3195
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4986986160
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top