Clone Name | rbasd15l01 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | WDR6_HUMAN (Q9NNW5) WD-repeat protein 6 | 26 | 7.8 | 2 | SO1A4_RAT (O35913) Solute carrier organic anion transporter fami... | 29 | 8.6 |
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>WDR6_HUMAN (Q9NNW5) WD-repeat protein 6| Length = 1121 Score = 26.2 bits (56), Expect(2) = 7.8 Identities = 22/74 (29%), Positives = 25/74 (33%) Frame = -2 Query: 522 RGSILLLHTMPGFLNKCPCGGL*ACGVSRLSFADAGVCSGRALTGRQVSG*TDSLYNKMQ 343 RGS+LL + PG L GG G G A TG SL+ K Sbjct: 512 RGSVLLFPSRPGLLKDPGVGGKARAGAGAPVVGSGSSGGGNAFTGLGPVSTLPSLHGKQG 571 Query: 342 NALVIAIFGCEITT 301 V G TT Sbjct: 572 VTSVTCHGGYVYTT 585 Score = 21.6 bits (44), Expect(2) = 7.8 Identities = 7/25 (28%), Positives = 16/25 (64%) Frame = -1 Query: 220 RALSCKELHWLQGIVVPHKRNLLVL 146 R SC+ ++WL G+ + ++++L Sbjct: 606 RQKSCRGMNWLAGLRIVPDGSMVIL 630
>SO1A4_RAT (O35913) Solute carrier organic anion transporter family member 1A4| (Solute carrier family 21 member 5) (Sodium-independent organic anion-transporting polypeptide 2) (Brain digoxin carrier protein) (Brain-specific organic anion transporter) (OA Length = 661 Score = 29.3 bits (64), Expect = 8.6 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 7/37 (18%) Frame = -2 Query: 354 NKMQNALVIAIFGCEITTL-------YLERIIEGEEK 265 NK+Q L+IAIFGC I +L L R I+ EEK Sbjct: 507 NKLQYFLIIAIFGCFIYSLAGIPGYMVLLRCIKSEEK 543 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,963,921 Number of Sequences: 219361 Number of extensions: 1476172 Number of successful extensions: 3195 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 3114 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3195 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4986986160 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)