>RL13A_LUPLU (O49885) 60S ribosomal protein L13a|
          Length = 205

 Score = 94.0 bits (232), Expect = 8e-20
 Identities = 45/69 (65%), Positives = 53/69 (76%)
 Frame = -3

Query: 371 GHKYCLLGELSKEVGWNYHETIXXXXXXXXXXXKVSYDRRKQLXKLRVKAEKAAEEKLGS 192
           GHKYCLLG+LS EVGWNY++TI           +V Y+R+KQL KLRVKAE+ A+EKLGS
Sbjct: 136 GHKYCLLGQLSSEVGWNYYDTIKELEKKRKERSQVVYERKKQLNKLRVKAEQVAQEKLGS 195

Query: 191 QLDILAPXK 165
           QLDILAP K
Sbjct: 196 QLDILAPVK 204

>R13AD_ARATH (Q9FKC0) 60S ribosomal protein L13a-4|
          Length = 206

 Score = 93.2 bits (230), Expect = 1e-19
 Identities = 45/69 (65%), Positives = 51/69 (73%)
 Frame = -3

Query: 371 GHKYCLLGELSKEVGWNYHETIXXXXXXXXXXXKVSYDRRKQLXKLRVKAEKAAEEKLGS 192
           GHKYCLLG LS EVGWN+++TI            V Y+R+KQL KLRVKAEK AEEKLG+
Sbjct: 137 GHKYCLLGRLSSEVGWNHYDTIKELETKRKERAHVVYERKKQLNKLRVKAEKVAEEKLGA 196

Query: 191 QLDILAPXK 165
           QLDILAP K
Sbjct: 197 QLDILAPVK 205

>R13AC_ARATH (Q9SVR0) 60S ribosomal protein L13a-3|
          Length = 206

 Score = 91.7 bits (226), Expect = 4e-19
 Identities = 43/69 (62%), Positives = 51/69 (73%)
 Frame = -3

Query: 371 GHKYCLLGELSKEVGWNYHETIXXXXXXXXXXXKVSYDRRKQLXKLRVKAEKAAEEKLGS 192
           GHKYCLLG LS EVGWN+++TI           +V Y+R+KQL KLR KAEK AEE+LGS
Sbjct: 137 GHKYCLLGRLSSEVGWNHYDTIKELETKRKERSQVMYERKKQLNKLRTKAEKVAEERLGS 196

Query: 191 QLDILAPXK 165
           QLD+LAP K
Sbjct: 197 QLDVLAPVK 205

>R13AA_ARATH (Q9SFU1) 60S ribosomal protein L13a-1|
          Length = 206

 Score = 90.9 bits (224), Expect = 7e-19
 Identities = 43/69 (62%), Positives = 50/69 (72%)
 Frame = -3

Query: 371 GHKYCLLGELSKEVGWNYHETIXXXXXXXXXXXKVSYDRRKQLXKLRVKAEKAAEEKLGS 192
           GHKYCLLG LS EVGWN+++TI           +  Y+R+KQL KLR KAEK AEEKLGS
Sbjct: 137 GHKYCLLGRLSSEVGWNHYDTIKELENKRKERAQAVYERKKQLSKLRAKAEKVAEEKLGS 196

Query: 191 QLDILAPXK 165
           QLD+LAP K
Sbjct: 197 QLDVLAPVK 205

>R13AB_ARATH (Q9LRX8) 60S ribosomal protein L13a-2|
          Length = 206

 Score = 87.8 bits (216), Expect = 6e-18
 Identities = 42/69 (60%), Positives = 49/69 (71%)
 Frame = -3

Query: 371 GHKYCLLGELSKEVGWNYHETIXXXXXXXXXXXKVSYDRRKQLXKLRVKAEKAAEEKLGS 192
           GHKYCLLG LS EVGWN+++TI           +  Y+R+KQL KLR KAEK AEEKLGS
Sbjct: 137 GHKYCLLGRLSSEVGWNHYDTIKELEVKRKERSQALYERKKQLTKLRAKAEKVAEEKLGS 196

Query: 191 QLDILAPXK 165
           QLD+LA  K
Sbjct: 197 QLDVLASIK 205

>RL13A_PICMA (O65055) 60S ribosomal protein L13a|
          Length = 206

 Score = 75.9 bits (185), Expect = 2e-14
 Identities = 36/69 (52%), Positives = 48/69 (69%)
 Frame = -3

Query: 371 GHKYCLLGELSKEVGWNYHETIXXXXXXXXXXXKVSYDRRKQLXKLRVKAEKAAEEKLGS 192
           GHKYCLLG LSKEVGW++ +TI           +VSY+RRKQL KLR KA + AE++L  
Sbjct: 137 GHKYCLLGRLSKEVGWHHFDTITELEEKRKAKAQVSYERRKQLAKLRSKAVELAEKQLAP 196

Query: 191 QLDILAPXK 165
           ++++LA  K
Sbjct: 197 EMELLASLK 205

>RL13A_BOVIN (Q3SZ90) 60S ribosomal protein L13a|
          Length = 202

 Score = 47.8 bits (112), Expect = 7e-06
 Identities = 23/63 (36%), Positives = 34/63 (53%)
 Frame = -3

Query: 365 KYCLLGELSKEVGWNYHETIXXXXXXXXXXXKVSYDRRKQLXKLRVKAEKAAEEKLGSQL 186
           K+  LG L+ EVGW Y               K+ Y ++KQL +LR +AEK  E+K+G   
Sbjct: 133 KFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNIEKKIGKFT 192

Query: 185 DIL 177
           ++L
Sbjct: 193 EVL 195

>RL13A_PONPY (Q5RA38) 60S ribosomal protein L13a|
          Length = 202

 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 22/63 (34%), Positives = 33/63 (52%)
 Frame = -3

Query: 365 KYCLLGELSKEVGWNYHETIXXXXXXXXXXXKVSYDRRKQLXKLRVKAEKAAEEKLGSQL 186
           K+  LG L+ EVGW Y               K+ Y ++KQL +LR +AEK  E+K+    
Sbjct: 133 KFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLVRLRKQAEKNVEKKIDKYT 192

Query: 185 DIL 177
           ++L
Sbjct: 193 EVL 195

>RL13A_HUMAN (P40429) 60S ribosomal protein L13a (23 kDa highly basic protein)|
          Length = 202

 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 22/63 (34%), Positives = 33/63 (52%)
 Frame = -3

Query: 365 KYCLLGELSKEVGWNYHETIXXXXXXXXXXXKVSYDRRKQLXKLRVKAEKAAEEKLGSQL 186
           K+  LG L+ EVGW Y               K+ Y ++KQL +LR +AEK  E+K+    
Sbjct: 133 KFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYT 192

Query: 185 DIL 177
           ++L
Sbjct: 193 EVL 195

>RL13A_MACFA (Q4R8Z2) 60S ribosomal protein L13a|
          Length = 202

 Score = 45.4 bits (106), Expect = 3e-05
 Identities = 22/63 (34%), Positives = 32/63 (50%)
 Frame = -3

Query: 365 KYCLLGELSKEVGWNYHETIXXXXXXXXXXXKVSYDRRKQLXKLRVKAEKAAEEKLGSQL 186
           K+  LG L+ EVGW Y               K+ Y ++KQL +LR +AEK  E+K+    
Sbjct: 133 KFAYLGRLAHEVGWKYQAVTTTLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYT 192

Query: 185 DIL 177
            +L
Sbjct: 193 QVL 195

>RL13A_RAT (P35427) 60S ribosomal protein L13a|
          Length = 202

 Score = 44.7 bits (104), Expect = 6e-05
 Identities = 22/63 (34%), Positives = 33/63 (52%)
 Frame = -3

Query: 365 KYCLLGELSKEVGWNYHETIXXXXXXXXXXXKVSYDRRKQLXKLRVKAEKAAEEKLGSQL 186
           K+  LG L+ EVGW Y               K+ Y ++KQL +LR +AEK  E+K+    
Sbjct: 133 KFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLLRLRKQAEKNVEKKICKFT 192

Query: 185 DIL 177
           ++L
Sbjct: 193 EVL 195

>RL13A_CAEEL (Q27389) 60S ribosomal protein L13a|
          Length = 202

 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 18/63 (28%), Positives = 34/63 (53%)
 Frame = -3

Query: 365 KYCLLGELSKEVGWNYHETIXXXXXXXXXXXKVSYDRRKQLXKLRVKAEKAAEEKLGSQL 186
           K+C++G LS EVGW + + +              ++++K++ KL V+A+K A  K+    
Sbjct: 134 KFCVVGRLSHEVGWQFQDVVAKLEAKRKVKGAAYFEQKKKMDKLAVQAKKNAAPKIAQYQ 193

Query: 185 DIL 177
            I+
Sbjct: 194 KII 196

>RL13A_CYAPA (P93099) 60S ribosomal protein L13a|
          Length = 200

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 20/57 (35%), Positives = 27/57 (47%)
 Frame = -3

Query: 371 GHKYCLLGELSKEVGWNYHETIXXXXXXXXXXXKVSYDRRKQLXKLRVKAEKAAEEK 201
           G K+C+LG L+ EVGW + + +              Y R+K L  LR KA  A   K
Sbjct: 131 GRKFCVLGRLATEVGWRHSDLVTRLEEKRKTKSAAFYARKKTLVNLRAKAAVAVASK 187

>RL13A_MOUSE (P19253) 60S ribosomal protein L13a (Transplantation antigen P198)|
           (Tum-P198 antigen)
          Length = 202

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 21/63 (33%), Positives = 33/63 (52%)
 Frame = -3

Query: 365 KYCLLGELSKEVGWNYHETIXXXXXXXXXXXKVSYDRRKQLXKLRVKAEKAAEEKLGSQL 186
           K+  LG L+ EVGW Y               K+ Y ++KQ+ +LR +AEK  E+K+    
Sbjct: 133 KFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKMHYRKKKQILRLRKQAEKNVEKKICKFT 192

Query: 185 DIL 177
           ++L
Sbjct: 193 EVL 195

>RL13A_DROME (Q9VNE9) 60S ribosomal protein L13A|
          Length = 205

 Score = 42.0 bits (97), Expect = 4e-04
 Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
 Frame = -3

Query: 365 KYCLLGELSKEVGWNYHETIXXXXXXXXXXXKVSYDRRKQLXKLRVKAE----KAAE 207
           KYC +G LS EVGW+Y + I           +V+    ++L KL VKA     KAAE
Sbjct: 136 KYCQVGRLSHEVGWHYQDVIKSLERKRKAKLRVTLKHNRELKKLTVKARENIAKAAE 192

>RL16_NEUCR (Q9P720) 60S ribosomal protein L16|
          Length = 202

 Score = 41.2 bits (95), Expect = 6e-04
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = -3

Query: 371 GHKYCLLGELSKEVGWNYHETIXXXXXXXXXXXKVSYDRRKQLXKLRVKAEKAAE 207
           G K+C +G LS EVGW Y + +              Y+R+K   +   +A+K+A+
Sbjct: 134 GRKFCTVGRLSSEVGWKYEDVVSRLEERRKAKGAAYYERKKVAARQLSEAKKSAK 188

>RL13A_SALTR (Q91487) 60S ribosomal protein L13a (Transplantation antigen P198|
           homolog) (Fragment)
          Length = 189

 Score = 38.5 bits (88), Expect = 0.004
 Identities = 20/63 (31%), Positives = 28/63 (44%)
 Frame = -3

Query: 365 KYCLLGELSKEVGWNYHETIXXXXXXXXXXXKVSYDRRKQLXKLRVKAEKAAEEKLGSQL 186
           K+ LLG L+ EVGW Y               K+ Y ++K + KL   AEK  E  +    
Sbjct: 120 KFALLGRLAHEVGWKYQAITATLEEKRKEKAKIRYAKKKTVTKLSKLAEKNVESTISKYT 179

Query: 185 DIL 177
            +L
Sbjct: 180 AVL 182

>RL16B_SCHPO (O42991) 60S ribosomal protein L16-B|
          Length = 197

 Score = 36.2 bits (82), Expect = 0.020
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = -3

Query: 371 GHKYCLLGELSKEVGWNYHETIXXXXXXXXXXXKVSYDRRKQLXKLRVKAEKAAEEKLGS 192
           G KYC +G LS EVGW Y++ +               +RRK       +A+ A ++K+ S
Sbjct: 133 GRKYCTVGRLSSEVGWKYNDIVAKLE-----------ERRKVKSAAFYQAKLAKQKKIAS 181

>RL16A_SCHPO (O42848) 60S ribosomal protein L16-A|
          Length = 197

 Score = 35.4 bits (80), Expect = 0.034
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = -3

Query: 371 GHKYCLLGELSKEVGWNYHETIXXXXXXXXXXXKVSYDRRKQLXKLRVKAEKAAEEKLGS 192
           G KYC +G LS EVGW Y + +               +RRK       +A+ A ++K+ S
Sbjct: 133 GRKYCTVGRLSSEVGWKYSDIVSKLE-----------ERRKVKSAAFYQAKLAKQKKIAS 181

>RL16A_YEAST (P26784) 60S ribosomal protein L16-A (L13A) (RP22)|
          Length = 198

 Score = 35.4 bits (80), Expect = 0.034
 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
 Frame = -3

Query: 371 GHKYCLLGELSKEVGWNYHETIXXXXXXXXXXXKVSYDRRKQLXKLRVKAE-KAAEEKLG 195
           G KY  LG+LS  VGW Y + +              Y +++   K    A   AAE  + 
Sbjct: 131 GRKYTTLGKLSTSVGWKYEDVVAKLEAKRKVSSAEYYAKKRAFTKKVASANATAAESDVA 190

Query: 194 SQLDIL 177
            QL  L
Sbjct: 191 KQLAAL 196

>RL13A_CHOPR (Q8MUR4) 60S ribosomal protein L13A|
          Length = 204

 Score = 35.0 bits (79), Expect = 0.044
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -3

Query: 371 GHKYCLLGELSKEVGWNYHETI 306
           G KYC +G LS EVGW Y E +
Sbjct: 134 GRKYCHVGRLSHEVGWKYREVV 155

>RL16B_YEAST (P26785) 60S ribosomal protein L16-B (YL15) (RP23)|
          Length = 197

 Score = 34.7 bits (78), Expect = 0.058
 Identities = 17/56 (30%), Positives = 23/56 (41%)
 Frame = -3

Query: 371 GHKYCLLGELSKEVGWNYHETIXXXXXXXXXXXKVSYDRRKQLXKLRVKAEKAAEE 204
           G KY  LG+LS  VGW Y + +              Y +++   K    A  AA E
Sbjct: 130 GRKYTTLGKLSTSVGWKYEDVVAKLEDKRKVRSAEYYAKKRAFTKKVSSASAAASE 185

>RL13A_SPOFR (Q962U0) 60S ribosomal protein L13A|
          Length = 204

 Score = 33.9 bits (76), Expect = 0.099
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -3

Query: 371 GHKYCLLGELSKEVGWNYHETI 306
           G KYC +G LS EVGW Y + +
Sbjct: 134 GRKYCHVGRLSHEVGWKYRDVV 155

>RL16C_SCHPO (O43004) 60S ribosomal protein L16-C|
          Length = 197

 Score = 31.6 bits (70), Expect = 0.49
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 365 KYCLLGELSKEVGWNYHETI 306
           KYC +G LS EVGW Y   +
Sbjct: 135 KYCTIGRLSSEVGWKYKNIV 154

>HSLU_RALSO (Q8Y3D8) ATP-dependent hsl protease ATP-binding subunit hslU|
          Length = 443

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -3

Query: 269 VSYDRRKQLXKLRVKAEKAAEEKLGSQLDILAP 171
           V   R  ++ K+R KAE AAE++L   LD+L P
Sbjct: 109 VKQTRESEMKKVRAKAEDAAEDRL---LDVLIP 138

>ATM_CANAL (Q5ABX0) Serine/threonine-protein kinase TEL1 (EC 2.7.11.1)|
           (DNA-damage checkpoint kinase TEL1) (Telomere length
           regulation protein 1) (ATM homolog)
          Length = 2873

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -2

Query: 135 LFCWIXVVIVYVSSLRVSMRFXTYE 61
           LFCWI V+   V+ +R SM+F T+E
Sbjct: 771 LFCWIIVLSNIVAKVR-SMKFVTHE 794


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,313,434
Number of Sequences: 219361
Number of extensions: 458812
Number of successful extensions: 991
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 80,573,946
effective HSP length: 99
effective length of database: 58,857,207
effective search space used: 1412572968
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)