>SNF7_CANGA (Q6FW96) Vacuolar sorting protein SNF7 (Vacuolar protein|
           sorting-associated protein VPS32)
          Length = 228

 Score = 55.8 bits (133), Expect = 1e-07
 Identities = 27/50 (54%), Positives = 37/50 (74%)
 Frame = -3

Query: 658 ETVDALRTGAKAMKAMQKATNIDDVDKTMDEINEQTENMKQIQDALSAPL 509
           ET+ A++ GAKAMK++    +ID VD+TMDEI EQ E  ++I DA+S PL
Sbjct: 100 ETMRAMKQGAKAMKSIHSGLDIDRVDETMDEIREQVELGEEISDAISRPL 149

>SNF7_YEAST (P39929) Vacuolar sorting protein SNF7 (DOA4-independent|
           degradation protein 1) (Vacuolar protein
           sorting-associated protein VPS32)
          Length = 240

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 27/50 (54%), Positives = 35/50 (70%)
 Frame = -3

Query: 658 ETVDALRTGAKAMKAMQKATNIDDVDKTMDEINEQTENMKQIQDALSAPL 509
           ET+ A++ GAKAMK +    +ID VD+TMDEI EQ E   +I DA+S PL
Sbjct: 102 ETMRAMQEGAKAMKTIHSGLDIDKVDETMDEIREQVELGDEISDAISRPL 151

>SNF7_KLULA (Q6CJL0) Vacuolar sorting protein SNF7 (Vacuolar protein|
           sorting-associated protein VPS32)
          Length = 232

 Score = 52.8 bits (125), Expect = 9e-07
 Identities = 25/50 (50%), Positives = 35/50 (70%)
 Frame = -3

Query: 658 ETVDALRTGAKAMKAMQKATNIDDVDKTMDEINEQTENMKQIQDALSAPL 509
           ET+ A++ GA AMK + K  ++D VD TMDEI EQ E  ++I +A+S PL
Sbjct: 99  ETLKAMKQGASAMKNIHKGLDLDKVDDTMDEIREQVELNQEISEAISKPL 148

>SNF7_CANAL (Q5ABD0) Vacuolar sorting protein SNF7 (Vacuolar protein|
           sorting-associated protein VPS32)
          Length = 226

 Score = 51.2 bits (121), Expect = 3e-06
 Identities = 24/51 (47%), Positives = 35/51 (68%)
 Frame = -3

Query: 658 ETVDALRTGAKAMKAMQKATNIDDVDKTMDEINEQTENMKQIQDALSAPLG 506
           ET+ A++ GAKAMK +    ++D V+ TMDEI EQ E   +I +A+S P+G
Sbjct: 100 ETMKAMKQGAKAMKQIHGEYDVDKVEDTMDEIREQVELADEISEAISRPVG 150

>SNF7_ASHGO (Q753W3) Vacuolar sorting protein SNF7 (Vacuolar protein|
           sorting-associated protein VPS32)
          Length = 237

 Score = 50.1 bits (118), Expect = 6e-06
 Identities = 23/50 (46%), Positives = 36/50 (72%)
 Frame = -3

Query: 658 ETVDALRTGAKAMKAMQKATNIDDVDKTMDEINEQTENMKQIQDALSAPL 509
           ET+ A++ GA AMK + +  +++ VD+TMDEI EQ E  ++I +A+S PL
Sbjct: 101 ETMKAMKQGASAMKHIHEGLDVERVDETMDEIREQVELGEEISEAISRPL 150

>SNF7_DEBHA (Q6BSH2) Vacuolar sorting protein SNF7 (Vacuolar protein|
           sorting-associated protein VPS32)
          Length = 226

 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 22/51 (43%), Positives = 35/51 (68%)
 Frame = -3

Query: 658 ETVDALRTGAKAMKAMQKATNIDDVDKTMDEINEQTENMKQIQDALSAPLG 506
           ET+ A++ GA+AMK +    ++D V+ TMD+I EQ E   +I +A+S P+G
Sbjct: 99  ETMKAMKQGAQAMKQIHGEYDVDKVENTMDDIREQVELADEISEAISRPVG 149

>SNF7_SCHPO (Q9P7F7) Vacuolar sorting protein snf7 (Vacuolar protein|
           sorting-associated protein vps32)
          Length = 222

 Score = 47.4 bits (111), Expect = 4e-05
 Identities = 21/51 (41%), Positives = 35/51 (68%)
 Frame = -3

Query: 658 ETVDALRTGAKAMKAMQKATNIDDVDKTMDEINEQTENMKQIQDALSAPLG 506
           ET+ A+R GA+AMK++Q+  + D VD+ MD+I +Q    ++I   +S P+G
Sbjct: 99  ETLQAMRQGAEAMKSIQRGMDADKVDQIMDKIRDQQTISEEISTMISTPVG 149

>CHMP5_XENTR (Q5FW29) Charged multivesicular body protein 5 (Chromatin-modifying|
           protein 5)
          Length = 219

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 21/50 (42%), Positives = 30/50 (60%)
 Frame = -3

Query: 655 TVDALRTGAKAMKAMQKATNIDDVDKTMDEINEQTENMKQIQDALSAPLG 506
           TVDA++ GAK MK   K   ID ++   D++ +  EN  +IQ+ALS   G
Sbjct: 105 TVDAMKVGAKEMKKAYKQVKIDQIEDLQDQLEDMMENANEIQEALSRSYG 154

>CHMP5_XENLA (Q6DD52) Charged multivesicular body protein 5 (Chromatin-modifying|
           protein 5)
          Length = 219

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 21/50 (42%), Positives = 30/50 (60%)
 Frame = -3

Query: 655 TVDALRTGAKAMKAMQKATNIDDVDKTMDEINEQTENMKQIQDALSAPLG 506
           TVDA++ GAK MK   K   ID ++   D++ +  EN  +IQ+ALS   G
Sbjct: 105 TVDAMKVGAKEMKKAYKQVKIDQIEDLQDQLEDMMENANEIQEALSRSYG 154

>SNF7_YARLI (Q6CBS3) Vacuolar sorting protein SNF7 (Vacuolar protein|
           sorting-associated protein VPS32)
          Length = 215

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 22/49 (44%), Positives = 32/49 (65%)
 Frame = -3

Query: 658 ETVDALRTGAKAMKAMQKATNIDDVDKTMDEINEQTENMKQIQDALSAP 512
           ET+ A++ GAKAMK +    NID VDK MDE  +Q    +++ +A+S P
Sbjct: 95  ETMKAMQEGAKAMKQIHGNMNIDKVDKIMDETRDQVALSEEVSEAISRP 143

>SNF7_CRYNE (Q5KL29) Vacuolar sorting protein SNF7 (Vacuolar protein|
           sorting-associated protein VPS32)
          Length = 220

 Score = 43.9 bits (102), Expect = 4e-04
 Identities = 21/51 (41%), Positives = 31/51 (60%)
 Frame = -3

Query: 658 ETVDALRTGAKAMKAMQKATNIDDVDKTMDEINEQTENMKQIQDALSAPLG 506
           ET+ A++ GA A+K +      + VD TMD+I EQ +    I DA+S P+G
Sbjct: 100 ETMVAMKKGADALKGIHSNLTAEGVDATMDKIREQMDLTNDISDAISNPVG 150

>CHM4B_BRARE (Q7ZVC4) Charged multivesicular body protein 4b|
           (Chromatin-modifying protein 4b) (CHMP4b)
          Length = 220

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 22/51 (43%), Positives = 31/51 (60%)
 Frame = -3

Query: 658 ETVDALRTGAKAMKAMQKATNIDDVDKTMDEINEQTENMKQIQDALSAPLG 506
           E +  +   AKAMKA     +ID VD+ M +I EQ E  ++I DA+S P+G
Sbjct: 102 EVIKNMGYAAKAMKAAHDNMDIDKVDELMQDIIEQQELAQEISDAISKPVG 152

>CHMP5_BRARE (Q7T339) Charged multivesicular body protein 5 (Chromatin-modifying|
           protein 5)
          Length = 220

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 18/50 (36%), Positives = 30/50 (60%)
 Frame = -3

Query: 655 TVDALRTGAKAMKAMQKATNIDDVDKTMDEINEQTENMKQIQDALSAPLG 506
           TV+A++ GAK MK   K   ID ++   D++ +  E+  ++Q+ALS   G
Sbjct: 105 TVEAMKIGAKEMKKAYKNVKIDQIEDLQDQLEDMMEDANEVQEALSRSYG 154

>CHM4C_BRARE (Q6IQ73) Charged multivesicular body protein 4c|
           (Chromatin-modifying protein 4c) (CHMP4c)
          Length = 224

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 21/51 (41%), Positives = 30/51 (58%)
 Frame = -3

Query: 658 ETVDALRTGAKAMKAMQKATNIDDVDKTMDEINEQTENMKQIQDALSAPLG 506
           E +  +   AKAMK   +  +ID VD  M +I EQ E  ++I DA+S P+G
Sbjct: 102 EVLKNMGFAAKAMKTAHENMDIDKVDDLMQDITEQQELAQEISDAISRPVG 152

>CHM4A_HUMAN (Q9BY43) Charged multivesicular body protein 4a|
           (Chromatin-modifying protein 4a) (CHMP4a) (Vacuolar
           protein sorting 7-1) (SNF7-1) (hSnf-1) (SNF7 homolog
           associated with Alix-2)
          Length = 222

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 20/51 (39%), Positives = 31/51 (60%)
 Frame = -3

Query: 658 ETVDALRTGAKAMKAMQKATNIDDVDKTMDEINEQTENMKQIQDALSAPLG 506
           E +  +   A++MK   +  +ID VD+ M +I EQ E  +QI DA+S P+G
Sbjct: 101 EVLRTMELAAQSMKKAYQDMDIDKVDELMTDITEQQEVAQQISDAISRPMG 151

>CHM4B_XENTR (Q6GL11) Charged multivesicular body protein 4b|
           (Chromatin-modifying protein 4b) (CHMP4b)
          Length = 222

 Score = 39.7 bits (91), Expect = 0.008
 Identities = 20/51 (39%), Positives = 31/51 (60%)
 Frame = -3

Query: 658 ETVDALRTGAKAMKAMQKATNIDDVDKTMDEINEQTENMKQIQDALSAPLG 506
           E +  +   AKAMKA     +I+ VD+ M +I +Q E  ++I DA+S P+G
Sbjct: 102 EVLKNMGFAAKAMKAAHDNMDIEKVDELMQDIADQQELAQEISDAISKPVG 152

>CHM4B_XENLA (Q5XGW6) Charged multivesicular body protein 4b|
           (Chromatin-modifying protein 4b) (CHMP4b)
          Length = 222

 Score = 39.7 bits (91), Expect = 0.008
 Identities = 20/51 (39%), Positives = 31/51 (60%)
 Frame = -3

Query: 658 ETVDALRTGAKAMKAMQKATNIDDVDKTMDEINEQTENMKQIQDALSAPLG 506
           E +  +   AKAMKA     +I+ VD+ M +I +Q E  ++I DA+S P+G
Sbjct: 102 EVLKNMGFAAKAMKAAHDNMDIEKVDELMQDIADQQELAQEISDAISKPVG 152

>CHM4C_XENLA (Q6GNN8) Charged multivesicular body protein 4c|
           (Chromatin-modifying protein 4c) (CHMP4c)
          Length = 227

 Score = 39.7 bits (91), Expect = 0.008
 Identities = 18/51 (35%), Positives = 32/51 (62%)
 Frame = -3

Query: 658 ETVDALRTGAKAMKAMQKATNIDDVDKTMDEINEQTENMKQIQDALSAPLG 506
           E +  +   AKAMKA  +  +++ +D  M +I+EQ +  ++I DA+S P+G
Sbjct: 108 EVLKNMGYAAKAMKAAHENMDLEKIDDLMQDIHEQQDVAQEISDAISRPVG 158

>CHM4B_CHICK (Q5ZHP5) Charged multivesicular body protein 4b|
           (Chromatin-modifying protein 4b) (CHMP4b)
          Length = 227

 Score = 38.9 bits (89), Expect = 0.014
 Identities = 21/51 (41%), Positives = 29/51 (56%)
 Frame = -3

Query: 658 ETVDALRTGAKAMKAMQKATNIDDVDKTMDEINEQTENMKQIQDALSAPLG 506
           E +  +   AKAMKA     +ID VD+ M +I EQ E   +I  A+S P+G
Sbjct: 106 EVLKNMGFAAKAMKAAHDNMDIDKVDELMQDIAEQQELADEISTAISKPVG 156

>CHM4B_MOUSE (Q9D8B3) Charged multivesicular body protein 4b|
           (Chromatin-modifying protein 4b) (CHMP4b)
          Length = 224

 Score = 38.5 bits (88), Expect = 0.018
 Identities = 20/51 (39%), Positives = 30/51 (58%)
 Frame = -3

Query: 658 ETVDALRTGAKAMKAMQKATNIDDVDKTMDEINEQTENMKQIQDALSAPLG 506
           E +  +   AKAMKA     +ID VD+ M +I +Q E  ++I  A+S P+G
Sbjct: 104 EVLKNMGYAAKAMKAAHDNMDIDKVDELMQDIADQQELAEEISTAISKPVG 154

>CHM4B_HUMAN (Q9H444) Charged multivesicular body protein 4b|
           (Chromatin-modifying protein 4b) (CHMP4b) (Vacuolar
           protein sorting 7-2) (SNF7-2) (hSnf7-2) (SNF7 homolog
           associated with Alix 1) (hVps32)
          Length = 224

 Score = 38.5 bits (88), Expect = 0.018
 Identities = 20/51 (39%), Positives = 30/51 (58%)
 Frame = -3

Query: 658 ETVDALRTGAKAMKAMQKATNIDDVDKTMDEINEQTENMKQIQDALSAPLG 506
           E +  +   AKAMKA     +ID VD+ M +I +Q E  ++I  A+S P+G
Sbjct: 104 EVLKNMGYAAKAMKAAHDNMDIDKVDELMQDIADQQELAEEISTAISKPVG 154

>CHMP6_BRARE (Q503V0) Charged multivesicular body protein 6 (Chromatin-modifying|
           protein 6)
          Length = 205

 Score = 38.1 bits (87), Expect = 0.023
 Identities = 16/50 (32%), Positives = 30/50 (60%)
 Frame = -3

Query: 658 ETVDALRTGAKAMKAMQKATNIDDVDKTMDEINEQTENMKQIQDALSAPL 509
           + ++ L+ G   +K M +  +I++V+K MDE ++  E  KQI + L+  L
Sbjct: 98  KVIEGLKVGNDCLKKMHEVLSIEEVEKIMDETHDAIEYQKQIDEMLAGSL 147

>CG301_HUMAN (P59074) Protein CGI-301|
          Length = 171

 Score = 36.6 bits (83), Expect = 0.068
 Identities = 19/51 (37%), Positives = 30/51 (58%)
 Frame = -3

Query: 658 ETVDALRTGAKAMKAMQKATNIDDVDKTMDEINEQTENMKQIQDALSAPLG 506
           E +  + + AKA KA     +ID VD+ M +I +Q E  ++I  A+S P+G
Sbjct: 64  EVLKNMGSAAKAKKAAHDNMDIDKVDELMQDIADQQELGEEISTAISKPVG 114

>SNF7_MAGGR (P0C149) Vacuolar sorting protein SNF7 (Vacuolar protein|
           sorting-associated protein VPS32)
          Length = 226

 Score = 36.2 bits (82), Expect = 0.089
 Identities = 15/47 (31%), Positives = 31/47 (65%)
 Frame = -3

Query: 658 ETVDALRTGAKAMKAMQKATNIDDVDKTMDEINEQTENMKQIQDALS 518
           ET++A++   KAM+ +     ++ VD+TMD++ EQ    ++I +A++
Sbjct: 102 ETLEAMKKAGKAMEDIHGKLTVEKVDETMDKLREQNALSEEIVNAIT 148

>CHM4C_RAT (Q569C1) Charged multivesicular body protein 4c|
           (Chromatin-modifying protein 4c) (CHMP4c)
          Length = 232

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 14/38 (36%), Positives = 25/38 (65%)
 Frame = -3

Query: 631 AKAMKAMQKATNIDDVDKTMDEINEQTENMKQIQDALS 518
           AKAMKA+ +  +++ +D  M +I EQ +  ++I +A S
Sbjct: 113 AKAMKAVHENMDLNKIDDLMQDITEQQDIAQEISEAFS 150

>CHM4C_MOUSE (Q9D7F7) Charged multivesicular body protein 4c|
           (Chromatin-modifying protein 4c) (CHMP4c)
          Length = 232

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = -3

Query: 631 AKAMKAMQKATNIDDVDKTMDEINEQTENMKQIQDALS 518
           AKAMKA+    +++ +D  M +I EQ +  ++I +A S
Sbjct: 113 AKAMKAVHDNMDLNKIDDLMQDITEQQDIAQEISEAFS 150

>NU1M_STRCA (O21397) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 1)
          Length = 324

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = +2

Query: 320 SKLILLSRGFLWSRASWLRLAWDR 391
           +K +LLS GFLW RAS+ R  +D+
Sbjct: 267 TKTLLLSSGFLWVRASYPRFRYDQ 290

>VPS60_YEAST (Q03390) Vacuolar protein sorting-associated protein VPS60|
          Length = 262

 Score = 30.0 bits (66), Expect = 6.4
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = -3

Query: 655 TVDALRTGAKAMKAMQKATNIDDVDKTMDEINEQTENMKQIQDALS 518
           T++AL+    AMKA     NID +    DE+ +  E   ++Q+ L+
Sbjct: 143 TINALKQTNNAMKAQYGKINIDKLQDMQDEMLDLIEQGDELQEVLA 188

>NU1M_MONDO (O78703) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 1)
          Length = 318

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = +2

Query: 260 TFLYVVPPRN*SQ---CHFSLQCSKLILLSRGFLWSRASWLRLAWDR 391
           T L++ PP N +    C  S    K +LL+  FLW RAS+ R  +D+
Sbjct: 239 TILFLGPPLNHNHTYTCTISFMF-KTMLLTSAFLWVRASYPRFRYDQ 284

>NELL1_HUMAN (Q92832) Protein kinase C-binding protein NELL1 precursor (NEL-like|
           protein 1) (Nel-related protein 1)
          Length = 810

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -3

Query: 208 CMDSYPGARISGVVLSLIGSPDHVCQ 131
           C+DSY  +R+SG V ++ GSP   C+
Sbjct: 767 CLDSYGVSRLSGSVWTMAGSPCTTCK 792


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,569,253
Number of Sequences: 219361
Number of extensions: 1341147
Number of successful extensions: 3709
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 3599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3704
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6314008338
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)