>KLF13_HUMAN (Q9Y2Y9) Krueppel-like factor 13 (Transcription factor BTEB3)|
           (Basic transcription element-binding protein 3)
           (BTE-binding protein 3) (RANTES factor of late activated
           T-lymphocytes 1) (RFLAT-1) (Transcription factor NSLP1)
           (Novel Sp1-like zin
          Length = 288

 Score = 36.6 bits (83), Expect = 0.065
 Identities = 22/63 (34%), Positives = 30/63 (47%)
 Frame = +3

Query: 90  PPGTHQPRWKPGVAEVGVLGIYTDERKERTNHSICQKPMHKHKTHSAGRSHVKGRSLFLS 269
           P    +P  +PG A  G  G+    R+ R+   + + P  KHK H AG   V G+S  L 
Sbjct: 127 PEAGLEPEREPGPAGSGEPGLRQRVRRGRSRADL-ESPQRKHKCHYAGCEKVYGKSSHLK 185

Query: 270 NHL 278
            HL
Sbjct: 186 AHL 188

>KLF13_MOUSE (Q9JJZ6) Krueppel-like factor 13 (Transcription factor BTEB3)|
           (Basic transcription element-binding protein 3)
           (BTE-binding protein 3) (RANTES factor of late activated
           T-lymphocytes 1) (RFLAT-1) (Erythroid transcription
           factor FKLF-2)
          Length = 289

 Score = 35.4 bits (80), Expect = 0.15
 Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
 Frame = +3

Query: 60  GGARQHSTRPPPGTHQPR----WKPGVAEVGVLGIYTDERKERTNHSICQKPMHKHKTHS 227
           G A   +  P P   +P      +PG A  G  G+    R+ R+   + + P  KHK H 
Sbjct: 114 GQAGAPAAPPSPAWSEPEAALEQEPGPAGSGEPGLRQRGRRGRSRADL-ESPQRKHKCHY 172

Query: 228 AGRSHVKGRSLFLSNHL 278
           AG   V G+S  L  HL
Sbjct: 173 AGCEKVYGKSSHLKAHL 189

>RPGF3_RAT (Q9Z1C8) Rap guanine nucleotide exchange factor 3 (cAMP-regulated|
           guanine nucleotide exchange factor I) (cAMP-GEFI)
           (Exchange factor directly activated by cAMP 1) (Epac 1)
          Length = 884

 Score = 32.7 bits (73), Expect = 0.94
 Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
 Frame = +3

Query: 228 AGRSHVKGRSLFLSNHLLSS-PSSIRSPNTHLQAHRAAASGCRQENSCCTCTPGLHLHLP 404
           A   HV      L  HLL++ P+ IR    HL+ HR   SG    +       G+H    
Sbjct: 50  ATTEHVHKAGKLLYRHLLATYPTLIRDRKYHLRLHRQCCSGRELVDGILALGLGVHSRSQ 109

Query: 405 LVGYC 419
            VG C
Sbjct: 110 AVGIC 114

>TNP2_ECOLI (P06694) Transposase for transposon Tn21|
          Length = 988

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 29/105 (27%), Positives = 40/105 (38%), Gaps = 1/105 (0%)
 Frame = +3

Query: 45  KGRNTGGARQHSTRPPPGTHQPRWKPGVAEVGVLGIYTDERKERTNHSICQKPMHKHKTH 224
           +G NT  AR+     P G  +PRW+  V         TD   +R  + +C     K+   
Sbjct: 419 RGMNTDNARKLPADAPTGFIKPRWQKLV--------MTDAGIDRAYYELCALSELKNSLR 470

Query: 225 SAGRSHVKGRSLFLS-NHLLSSPSSIRSPNTHLQAHRAAASGCRQ 356
           S G   V+G   F      L  P    S     +   A A+GC Q
Sbjct: 471 S-GDIWVQGSRQFKDFEDYLVPPEKFTSLKQSSELPLAVATGCEQ 514

>SPEN_DROME (Q8SX83) Protein split ends|
          Length = 5560

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 20/65 (30%), Positives = 30/65 (46%)
 Frame = +3

Query: 174 RTNHSICQKPMHKHKTHSAGRSHVKGRSLFLSNHLLSSPSSIRSPNTHLQAHRAAASGCR 353
           RT H++     H   T S+ RSH +  S + S+H  SS S       H  +H  A+S  +
Sbjct: 431 RTRHNL-----HGRSTTSSSRSHSRSPSSYSSSHSSSSSS-------HSSSHSHASSPVQ 478

Query: 354 QENSC 368
              +C
Sbjct: 479 SSGNC 483

>ATX7_MOUSE (Q8R4I1) Ataxin-7 (Spinocerebellar ataxia type 7 protein homolog)|
          Length = 867

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 18/54 (33%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
 Frame = +2

Query: 434 GKKFPASAVGAGRRQPRASVLGRR---SGGAPGTCRGTHSTPRSPCPTASQNWR 586
           G    A   G+G   P  SV  R+   S   P T  G  S P SP     Q W+
Sbjct: 601 GTTLNAQPAGSGAMDPVCSVQSRQVLASSSPPSTPSGLSSVPSSPLSRKPQKWK 654

>RPGF3_MOUSE (Q8VCC8) Rap guanine nucleotide exchange factor 3 (cAMP-regulated|
           guanine nucleotide exchange factor I) (cAMP-GEFI)
           (Exchange factor directly activated by cAMP 1) (Epac 1)
          Length = 876

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
 Frame = +3

Query: 228 AGRSHVKGRSLFLSNHLLSS-PSSIRSPNTHLQAHRAAASGCRQENSCCTCTPGLHLHLP 404
           A   HV      L  HLL++ P+ IR    HL+ +R   SG    +       G+H    
Sbjct: 50  ATTEHVHKAGKLLHRHLLATYPTLIRDRKYHLRLYRHCCSGRELVDGILALGLGVHSRSQ 109

Query: 405 LVGYC 419
            VG C
Sbjct: 110 AVGIC 114

>LAMC3_MOUSE (Q9R0B6) Laminin gamma-3 chain precursor (Laminin 12 gamma 3|
           subunit)
          Length = 1581

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
 Frame = -3

Query: 403 GKCRCNPGVQVQQLFSWRQPEAAALCACRCVFGLRIEEGDDKRWLDKNKDRPL---TCDL 233
           G+C+CN         S  +P AA   ACRC         D +R L   +DRP    T + 
Sbjct: 278 GRCKCNGHA------SECEPNAAGQLACRCQH--NTTGVDCERCLPFFQDRPWARGTAED 329

Query: 232 PAECVLCLCIG 200
             EC+ C C G
Sbjct: 330 ANECLPCNCSG 340

>CAC1G_HUMAN (O43497) Voltage-dependent T-type calcium channel alpha-1G subunit|
            (Voltage-gated calcium channel alpha subunit Cav3.1)
            (Cav3.1c) (NBR13)
          Length = 2377

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 539  HSTPRSPCPTASQNWRWEGASHSRSCFQTDT 631
            H TP +PCP    NW  +G   +RS  + DT
Sbjct: 2190 HMTPPAPCPGPEPNW-GKGPPETRSSLELDT 2219

>THN1_WHEAT (P01544) Alpha-1-purothionin precursor (Purothionin A-II)|
           [Contains: Alpha-1-purothionin; Acidic protein]
           (Fragment)
          Length = 126

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
 Frame = -3

Query: 427 ES*QYPTKGKCRCNPGVQVQQLFSWR--QPEAAALCACRCVFGLRIEEGDDKRWLDKNKD 254
           E  Q   K  CR   G     L   R  Q   A +C C+   GL   +G  K  L+ N D
Sbjct: 10  EQLQVEGKSCCRSTLGRNCYNLCRARGAQKLCAGVCRCKISSGLSCPKGFPKLALESNSD 69

Query: 253 RPLT---CDLPAECVLC 212
            P T   C+L     +C
Sbjct: 70  EPDTIEYCNLGCRSSVC 86

>CPXP_BRAJA (Q59203) Cytochrome P450 BJ-1 (EC 1.14.14.-) (Cytochrome P450 112)|
          Length = 401

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -3

Query: 124 PGFHRGWWVPGGGRVECCLAPPVFRP 47
           P  H GWWV G    +  L+   FRP
Sbjct: 39  PSGHEGWWVTGYDEAKAVLSDAAFRP 64

>SMD3_DROME (O44437) Small nuclear ribonucleoprotein SM D3 (snRNP core protein|
           D3) (SM-D3)
          Length = 151

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 19/56 (33%), Positives = 25/56 (44%)
 Frame = +2

Query: 428 KTGKKFPASAVGAGRRQPRASVLGRRSGGAPGTCRGTHSTPRSPCPTASQNWRWEG 595
           +TGK    +A        RA   GR  GG PG  RGT   P +P  +  +   W+G
Sbjct: 86  QTGKGLGGTAGRGKAAILRAQARGRGRGGPPGGGRGTGGPPGAPGGSGGRG-AWQG 140

>THN2_WHEAT (P32032) Alpha-2-purothionin precursor [Contains:|
           Alpha-2-purothionin; Acidic protein]
          Length = 136

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 23/77 (29%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
 Frame = -3

Query: 427 ES*QYPTKGKCRCNPGVQVQQLFSWR--QPEAAALCACRCVFGLRIEEGDDKRWLDKNKD 254
           E  Q   K  CR   G     L   R  Q   + +C C+   GL   +G  K  L+ N D
Sbjct: 21  EQVQVEGKSCCRTTLGRNCYNLCRSRGAQKLCSTVCRCKLTSGLSCPKGFPKLALESNSD 80

Query: 253 RPLT---CDLPAECVLC 212
            P T   C+L     +C
Sbjct: 81  EPDTIEYCNLGCRSSVC 97

>TJAP1_MOUSE (Q9DCD5) Tight junction-associated protein 1 (Tight junction|
           protein 4) (Protein incorporated later into tight
           junctions)
          Length = 539

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
 Frame = +3

Query: 75  HSTRPPPGTHQPRWKPGVAEVGVLGIYTDERKERTNHSICQK-------PMHKHKTHSAG 233
           HST PPP  H+ R     AE    G   DE +E  N  +  +       P  +    ++G
Sbjct: 435 HSTAPPPSPHRERGLVLPAEPD-SGFPQDEEEEMLNLPVSPEEERQSLLPDKEGTEEASG 493

Query: 234 RSHVKGRS 257
            SHV GR+
Sbjct: 494 PSHVDGRA 501

>NUDH_THICR (Q31GX8) Probable (di)nucleoside polyphosphate hydrolase (EC|
           3.6.1.-)
          Length = 165

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 30/81 (37%), Positives = 36/81 (44%), Gaps = 9/81 (11%)
 Frame = -3

Query: 292 EGDDKRWLDKNKDRPLTCDLPAECVLC----LCIGF*HMEWFVLSFLSSVYIPSTPTSAT 125
           E  D R L + KD  LT DLP   +      +CIG   + WF+L  LS     +  T  T
Sbjct: 61  EPSDVRVLGRTKDW-LTYDLPKHLIRHYSQPVCIGQKQI-WFLLGMLSDDEKINLNTHET 118

Query: 124 PGFHRGW-----WVPGGGRVE 77
           P F  GW     WVP    VE
Sbjct: 119 PEF-EGWSWVDYWVPVQNVVE 138

>ASXL1_MOUSE (P59598) Putative Polycomb group protein ASXL1 (Additional sex|
            combs-like protein 1)
          Length = 1514

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 497  GRRSGGAPGTCRGTHSTPRSPC 562
            G   G APG C G H+T + PC
Sbjct: 1223 GSDPGAAPGQCLGDHTTSKVPC 1244

>FAR1_YEAST (P21268) Cyclin-dependent kinase inhibitor FAR1 (CKI FAR1) (Factor|
           arrest protein)
          Length = 830

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 13/62 (20%), Positives = 30/62 (48%)
 Frame = -2

Query: 614 RSANEMLPPSASFVKLSDMGSEEWSAFLDKFQELLPSAFRARKHAAGAGPRPLQRLGTSC 435
           R  + ++ P  +F+ + +   + W+ FLD  + + P+ FR  K       +  +RL ++ 
Sbjct: 636 RDGSGVVGPFGTFIGMINKNWDGWTTFLDNLEVVNPNVFRDEKQQYKVTLQTCERLASTS 695

Query: 434 QF 429
            +
Sbjct: 696 AY 697


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,117,502
Number of Sequences: 219361
Number of extensions: 2753787
Number of successful extensions: 9844
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 8918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9833
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6029593548
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)