ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd15k06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GAG_MPMV (P07567) Gag polyprotein (Core polyprotein) [Contains: ... 40 0.002
2GRP2_NICSY (P27484) Glycine-rich protein 2 39 0.003
3HEXP_LEIMA (Q04832) DNA-binding protein HEXBP (Hexamer-binding p... 39 0.003
4GLH2_CAEEL (Q966L9) ATP-dependent RNA helicase glh-2 (EC 3.6.1.-... 38 0.006
5GLH1_CAEEL (P34689) ATP-dependent RNA helicase glh-1 (EC 3.6.1.-... 38 0.006
6GRP2B_ARATH (Q38896) Glycine-rich protein 2b (AtGRP2b) 36 0.021
7GAG_SRV2 (P51516) Gag polyprotein (Core polyprotein) [Contains: ... 34 0.081
8LARK_DROME (Q94901) RNA-binding protein lark 34 0.081
9RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif pro... 34 0.11
10CNBP_RAT (P62634) Cellular nucleic acid-binding protein (CNBP) (... 34 0.11
11CNBP_PONPY (Q5R5R5) Cellular nucleic acid-binding protein (CNBP)... 34 0.11
12CNBP_HUMAN (P62633) Cellular nucleic acid-binding protein (CNBP)... 34 0.11
13CNBP_MOUSE (P53996) Cellular nucleic acid-binding protein (CNBP)... 34 0.11
14ZCHC5_HUMAN (Q8N8U3) Zinc finger CCHC domain-containing protein 5 34 0.11
15RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif pro... 33 0.14
16RBM4B_RAT (Q64LC9) RNA-binding protein 4B (RNA-binding motif pro... 33 0.14
17RBM4B_MOUSE (Q8VE92) RNA-binding protein 4B (RNA-binding motif p... 33 0.14
18RBM4B_HUMAN (Q9BQ04) RNA-binding protein 4B (RNA-binding motif p... 33 0.14
19RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif pro... 33 0.14
20RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif pro... 33 0.14
21GAG_SRV1 (P04022) Gag polyprotein (Core polyprotein) [Contains: ... 33 0.14
22RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif pro... 33 0.14
23GAG_BLVJ (P03344) Gag polyprotein [Contains: Core protein p15 (M... 33 0.18
24CNBP_CHICK (O42395) Cellular nucleic acid-binding protein (CNBP)... 33 0.24
25GIS2_YEAST (P53849) Zinc-finger protein GIS2 32 0.31
26POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from tran... 32 0.31
27ZCHC9_HUMAN (Q8N567) Zinc finger CCHC domain-containing protein 9 32 0.31
28ZCHC9_MOUSE (Q8R1J3) Zinc finger CCHC domain-containing protein 9 32 0.31
29GAG_GALV (P21416) Gag polyprotein [Contains: Core protein p15; C... 32 0.40
30GAK6_HUMAN (P62685) HERV-K_8p23.1 provirus ancestral Gag polypro... 32 0.53
31GAK5_HUMAN (P62684) HERV-K_19p13.11 provirus ancestral Gag polyp... 32 0.53
32GAK4_HUMAN (P63126) HERV-K_6q14.1 provirus ancestral Gag polypro... 32 0.53
33GAK3_HUMAN (Q9YNA8) HERV-K_19q12 provirus ancestral Gag polyprot... 32 0.53
34GAK1_HUMAN (P62683) HERV-K_12q14.1 provirus ancestral Gag polypr... 32 0.53
35GAK12_HUMAN (P63130) HERV-K_1q22 provirus ancestral Gag polyprot... 32 0.53
36GAK11_HUMAN (P63145) HERV-K_22q11.21 provirus ancestral Gag poly... 32 0.53
37GAK10_HUMAN (P87889) HERV-K_5q33.3 provirus ancestral Gag polypr... 32 0.53
38ZCH11_HUMAN (Q5TAX3) Zinc finger CCHC domain-containing protein 11 32 0.53
39GAG_BLVAU (P25058) Gag polyprotein [Contains: Core protein p15 (... 32 0.53
40COAT_SOCMV (P15627) Coat protein 31 0.69
41GLH4_CAEEL (O76743) ATP-dependent RNA helicase glh-4 (EC 3.6.1.-... 31 0.69
42GAG_HTL1M (P14077) Gag polyprotein [Contains: Major core protein... 31 0.90
43Y493_RICPR (Q9ZD54) Putative aldolase class 2 protein RP493 31 0.90
44GAG_HTL1C (P14076) Gag polyprotein [Contains: Major core protein... 31 0.90
45GAG_HTL1A (P03345) Gag polyprotein [Contains: Major core protein... 31 0.90
46GAK18_HUMAN (P62690) HERV-K_22q11.23 provirus ancestral Gag poly... 31 0.90
47GAG_RSVP (P03322) Gag polyprotein [Contains: Core protein p19; C... 31 0.90
48GAG_HV2SB (P12450) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 30 1.2
49GAG_MMTVC (P11284) Gag polyprotein [Contains: Protein p10; Phosp... 30 1.2
50ZCHC4_XENLA (Q6DCD7) Zinc finger CCHC domain-containing protein 4 30 1.2
51COAT_FMVD (P09519) Probable coat protein 30 1.2
52BYR3_SCHPO (P36627) Cellular nucleic acid-binding protein homolog 30 1.2
53POL_HV2SB (P12451) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 30 1.2
54GAG_HV2NZ (P05891) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 30 1.5
55POL_HV2NZ (P05962) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 30 1.5
56POL_HV2D1 (P17757) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 30 1.5
57GAG_JSRV (P31622) Gag polyprotein [Contains: Core protein p10; C... 30 1.5
58GAG_HV2D1 (P17756) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 30 1.5
59GAG_SIVVT (P05892) Gag polyprotein [Contains: Core protein p17; ... 30 2.0
60GAG_HTLV2 (P03346) Gag polyprotein [Contains: Core protein p15 (... 30 2.0
61ZCHC6_MOUSE (Q5BLK4) Zinc finger CCHC domain-containing protein 6 30 2.0
62GAK8_HUMAN (Q9HDB9) HERV-K_3q12.3 provirus ancestral Gag polypro... 30 2.0
63POL_HV2KR (Q74120) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 30 2.0
64ZCHC6_HUMAN (Q5VYS8) Zinc finger CCHC domain-containing protein 6 30 2.0
65GAG_HV2KR (Q74119) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 30 2.0
66POL_COYMV (P19199) Putative polyprotein [Contains: Coat protein;... 30 2.0
67GAG_IPMA (P11365) Retrovirus-related Gag polyprotein [Contains: ... 29 2.6
68GAG_MMTVB (P10258) Gag polyprotein [Contains: Protein p10; Phosp... 29 2.6
69POL_HV2D2 (P15833) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 29 2.6
70POL_HV2ST (P20876) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 29 2.6
71GAG_SIVVG (P27978) Gag polyprotein [Contains: Core protein p17; ... 29 2.6
72TENX_HUMAN (P22105) Tenascin-X precursor (TN-X) (Hexabrachion-li... 29 2.6
73GAG_SIVV1 (P27972) Gag polyprotein [Contains: Core protein p17; ... 29 2.6
74GAG_HV2ST (P20874) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 29 2.6
75GAG_HV2D2 (P15832) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 29 2.6
76GAG_EIAVY (P69732) Gag polyprotein [Contains: Matrix protein p15... 29 3.4
77GAG_EIAVC (P69731) Gag polyprotein [Contains: Matrix protein p15... 29 3.4
78GAG_EIAV9 (P69730) Gag polyprotein [Contains: Matrix protein p15... 29 3.4
79POL_HV2G1 (P18042) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 29 3.4
80GAG_SIVSP (P19504) Gag polyprotein [Contains: Core protein p17; ... 29 3.4
81GAG_SIVS4 (P12496) Gag polyprotein [Contains: Core protein p17; ... 29 3.4
82GAG_HV2G1 (P18041) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 29 3.4
83GAG_SIVG1 (Q02843) Gag polyprotein [Contains: Core protein p17; ... 29 3.4
84GAK2_HUMAN (Q7LDI9) HERV-K_7p22.1 provirus ancestral Gag polypro... 28 4.5
85RBBP6_MOUSE (P97868) Retinoblastoma-binding protein 6 (p53-assoc... 28 4.5
86POL_HV2RO (P04584) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 28 4.5
87ZCH13_HUMAN (Q8WW36) Zinc finger CCHC domain-containing protein 13 28 4.5
88ZCHC7_HUMAN (Q8N3Z6) Zinc finger CCHC domain-containing protein 7 28 4.5
89ZCH10_HUMAN (Q8TBK6) Zinc finger CCHC domain-containing protein 10 28 4.5
90POL_HV2CA (P24107) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 28 4.5
91MSL5_YEAST (Q12186) Branchpoint-bridging protein MSL5 (MUD synth... 28 4.5
92RBBP6_HUMAN (Q7Z6E9) Retinoblastoma-binding protein 6 (p53-assoc... 28 4.5
93GAG_HV2RO (P04590) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 28 4.5
94GAG_HV2CA (P24106) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 28 4.5
95GAG_MLVFP (P26805) Gag polyprotein (Core polyprotein) [Contains:... 28 5.8
96GAG_MLVFF (P26806) Gag polyprotein (Core polyprotein) [Contains:... 28 5.8
97GAG_HV1MA (P04594) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 28 5.8
98COAT_CAMVN (Q00956) Coat protein 28 5.8
99COAT_CAMVC (P03543) Coat protein 28 5.8
100POL_HV1BR (P03367) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 28 5.8
101POL_HV1B5 (P04587) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 28 5.8
102COAT_CERV (P05399) Probable coat protein 28 5.8
103POL_HV1RH (P05959) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 28 5.8
104POL_HV1JR (P20875) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 28 5.8
105GAG_HV1RH (P05890) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 28 5.8
106POL_HV1C4 (P05960) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 28 5.8
107ZCHC2_HUMAN (Q9C0B9) Zinc finger CCHC domain-containing protein ... 28 5.8
108POL_HV1J3 (P12498) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 28 5.8
109COAT_CAMVS (P03542) Coat protein 28 5.8
110COAT_CAMVD (P03544) Coat protein 28 5.8
111POL_HV1MA (P04588) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 28 5.8
112GAG_HV1BR (P03348) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 28 5.8
113GAG_HV1B5 (P04593) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 28 5.8
114ZCHC4_XENTR (Q66IH9) Zinc finger CCHC domain-containing protein 4 28 5.8
115GAG_HV1LW (Q70622) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 28 5.8
116GAG_HV1J3 (P12494) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 28 5.8
117GAG_HV1C4 (P05887) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 28 5.8
118ZCHC2_MOUSE (Q69ZB8) Zinc finger CCHC domain-containing protein ... 28 5.8
119POL_HV2BE (P18096) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 28 5.8
120GAG_SIVCZ (P17282) Gag polyprotein [Contains: Core protein p18; ... 28 5.8
121GAG_HV2BE (P18095) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 28 5.8
122GAG_HV1JR (P20873) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 28 5.8
123ZCHC4_HUMAN (Q9H5U6) Zinc finger CCHC domain-containing protein 4 28 5.8
124GAG_MLVF5 (P26807) Gag polyprotein (Core polyprotein) [Contains:... 28 5.8
125CPSF4_MOUSE (Q8BQZ5) Cleavage and polyadenylation specificity fa... 28 7.6
126YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III 28 7.6
127PHC2_MOUSE (Q9QWH1) Polyhomeotic-like protein 2 (mPH2) (Early de... 28 7.6
128CPSF4_HUMAN (O95639) Cleavage and polyadenylation specificity fa... 28 7.6
129GAG_SIVM1 (P05894) Gag polyprotein [Contains: Core protein p17; ... 28 7.6
130POST_XENLA (P27536) Posterior protein (xPO) 27 10.0
131POL_HV1PV (P03368) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 27 10.0
132POL_HV1B1 (P03366) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 27 10.0
133GAG_VILVK (P35955) Gag polyprotein [Contains: Core protein p16; ... 27 10.0
134GAG_VILV2 (P23425) Gag polyprotein [Contains: Core protein p16; ... 27 10.0
135GAG_VILV1 (P23424) Gag polyprotein [Contains: Core protein p16; ... 27 10.0
136GAG_VILV (P03352) Gag polyprotein [Contains: Core protein p16; C... 27 10.0
137AIR1_YEAST (P40507) Protein AIR1 (Arginine methyltransferase-int... 27 10.0
138AIR2_YEAST (Q12476) Protein AIR2 (Arginine methyltransferase-int... 27 10.0
139SFRS7_HUMAN (Q16629) Splicing factor, arginine/serine-rich 7 (Sp... 27 10.0
140PEP7_YEAST (P32609) Vacuolar segregation protein PEP7 (Protein V... 27 10.0
141GAG_HV1PV (P03350) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 27 10.0
142GAG_HV1B1 (P03347) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 27 10.0
143GAG_SIVMS (P31634) Gag polyprotein [Contains: Core protein p17; ... 27 10.0
144GAG_BIV27 (P19559) Gag polyprotein (p53) [Contains: Matrix prote... 27 10.0
145GAG_BIV06 (P19558) Gag polyprotein (p53) [Contains: Matrix prote... 27 10.0
146GAG_HV1H2 (P04591) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 27 10.0
147YLE5_CAEEL (P46941) Hypothetical protein C38D4.5 in chromosome III 27 10.0
148SFRS7_MOUSE (Q8BL97) Splicing factor, arginine/serine-rich 7 27 10.0
149POL_HV1H2 (P04585) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 27 10.0

>GAG_MPMV (P07567) Gag polyprotein (Core polyprotein) [Contains: Core protein|
           p10; Core phosphoprotein pp24; Core protein p12; Core
           protein p27; Core protein p14; Core protein p4]
          Length = 656

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -1

Query: 311 GGGCFSCGESGHFSRECPNKAH*AAQP-VRSECP 213
           GG CF CG+ GHF++ C   AH  A+P V   CP
Sbjct: 545 GGCCFKCGKKGHFAKNCHEHAHNNAEPKVPGLCP 578



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>GRP2_NICSY (P27484) Glycine-rich protein 2|
          Length = 214

 Score = 39.3 bits (90), Expect = 0.003
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = -1

Query: 311 GGGCFSCGESGHFSREC 261
           GGGC+ CGE GHF+REC
Sbjct: 193 GGGCYKCGEDGHFAREC 209



 Score = 38.5 bits (88), Expect = 0.004
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = -1

Query: 311 GGGCFSCGESGHFSREC 261
           G GCF CGESGHF+R+C
Sbjct: 156 GSGCFKCGESGHFARDC 172



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>HEXP_LEIMA (Q04832) DNA-binding protein HEXBP (Hexamer-binding protein)|
          Length = 271

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 14/18 (77%), Positives = 15/18 (83%)
 Frame = -1

Query: 302 CFSCGESGHFSRECPNKA 249
           CF CGE GH SRECPN+A
Sbjct: 45  CFRCGEEGHMSRECPNEA 62



 Score = 37.7 bits (86), Expect = 0.007
 Identities = 13/18 (72%), Positives = 15/18 (83%)
 Frame = -1

Query: 302 CFSCGESGHFSRECPNKA 249
           CF CGE+GH SR+CPN A
Sbjct: 72  CFRCGEAGHMSRDCPNSA 89



 Score = 35.8 bits (81), Expect = 0.028
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = -1

Query: 302 CFSCGESGHFSRECPN 255
           C+ CGESGH SRECP+
Sbjct: 198 CYKCGESGHMSRECPS 213



 Score = 35.0 bits (79), Expect = 0.048
 Identities = 13/22 (59%), Positives = 17/22 (77%), Gaps = 3/22 (13%)
 Frame = -1

Query: 311 GGG---CFSCGESGHFSRECPN 255
           GGG   C+ CGE+GH SR+CP+
Sbjct: 249 GGGDRTCYKCGEAGHISRDCPS 270



 Score = 34.3 bits (77), Expect = 0.081
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -1

Query: 302 CFSCGESGHFSRECPN 255
           C+ CG++GH SR+CPN
Sbjct: 170 CYKCGDAGHISRDCPN 185



 Score = 34.3 bits (77), Expect = 0.081
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -1

Query: 302 CFSCGESGHFSRECPN 255
           C+ CG++GH SR+CPN
Sbjct: 142 CYKCGDAGHISRDCPN 157



 Score = 32.3 bits (72), Expect = 0.31
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 311 GGGCFSCGESGHFSRECPN 255
           G  C+ CG+ GH SR+CP+
Sbjct: 96  GFECYKCGQEGHLSRDCPS 114



 Score = 32.0 bits (71), Expect = 0.40
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -1

Query: 302 CFSCGESGHFSRECP 258
           C+ CG+ GH SRECP
Sbjct: 224 CYKCGKPGHISRECP 238



 Score = 30.4 bits (67), Expect = 1.2
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -1

Query: 302 CFSCGESGHFSRECP 258
           C +CG+ GH++RECP
Sbjct: 18  CRNCGKEGHYARECP 32



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>GLH2_CAEEL (Q966L9) ATP-dependent RNA helicase glh-2 (EC 3.6.1.-) (Germline|
           helicase 2)
          Length = 974

 Score = 38.1 bits (87), Expect = 0.006
 Identities = 14/19 (73%), Positives = 15/19 (78%)
 Frame = -1

Query: 305 GCFSCGESGHFSRECPNKA 249
           GCF+CGE GH S ECPN A
Sbjct: 474 GCFNCGEQGHRSNECPNPA 492



 Score = 27.7 bits (60), Expect = 7.6
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 302 CFSCGESGHFSRECPNK 252
           C++C + GH SR+CP +
Sbjct: 398 CYNCQQPGHNSRDCPEE 414



 Score = 27.7 bits (60), Expect = 7.6
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 302 CFSCGESGHFSRECPNK 252
           C++C + GH SR+CP +
Sbjct: 284 CYNCQQPGHNSRDCPEE 300



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>GLH1_CAEEL (P34689) ATP-dependent RNA helicase glh-1 (EC 3.6.1.-) (Germline|
           helicase 1)
          Length = 763

 Score = 38.1 bits (87), Expect = 0.006
 Identities = 14/19 (73%), Positives = 15/19 (78%)
 Frame = -1

Query: 305 GCFSCGESGHFSRECPNKA 249
           GCF+CGE GH S ECPN A
Sbjct: 263 GCFNCGEQGHRSNECPNPA 281



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>GRP2B_ARATH (Q38896) Glycine-rich protein 2b (AtGRP2b)|
          Length = 201

 Score = 36.2 bits (82), Expect = 0.021
 Identities = 14/19 (73%), Positives = 17/19 (89%), Gaps = 2/19 (10%)
 Frame = -1

Query: 311 GGG--CFSCGESGHFSREC 261
           GGG  C+SCGESGHF+R+C
Sbjct: 177 GGGLSCYSCGESGHFARDC 195



 Score = 32.3 bits (72), Expect = 0.31
 Identities = 13/20 (65%), Positives = 14/20 (70%), Gaps = 3/20 (15%)
 Frame = -1

Query: 311 GGG---CFSCGESGHFSREC 261
           GGG   CF CGE GH +REC
Sbjct: 132 GGGDNSCFKCGEPGHMAREC 151



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>GAG_SRV2 (P51516) Gag polyprotein (Core polyprotein) [Contains: Core protein|
           p10; Core phosphoprotein pp18; Core protein p12; Core
           protein p27; Core protein p14; Core protein p4]
          Length = 653

 Score = 34.3 bits (77), Expect = 0.081
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -1

Query: 308 GGCFSCGESGHFSREC 261
           GGCF CG+ GHF+++C
Sbjct: 543 GGCFKCGKKGHFAKDC 558



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>LARK_DROME (Q94901) RNA-binding protein lark|
          Length = 352

 Score = 34.3 bits (77), Expect = 0.081
 Identities = 18/39 (46%), Positives = 25/39 (64%)
 Frame = -1

Query: 302 CFSCGESGHFSRECPNKAH*AAQPVRSECPVPLRSFSYR 186
           C+ CG SGH+S+ECP + + +A   R E P PL +  YR
Sbjct: 170 CYRCGRSGHWSKECP-RLYGSAGGGR-EPPSPLSAGGYR 206



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>RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif protein 4)|
          Length = 419

 Score = 33.9 bits (76), Expect = 0.11
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -1

Query: 305 GCFSCGESGHFSRECP 258
           GC+ CG+ GH+S+ECP
Sbjct: 161 GCYRCGQEGHWSKECP 176



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>CNBP_RAT (P62634) Cellular nucleic acid-binding protein (CNBP) (Zinc finger|
           protein 9)
          Length = 177

 Score = 33.9 bits (76), Expect = 0.11
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -1

Query: 302 CFSCGESGHFSRECP 258
           CF CG SGH++RECP
Sbjct: 6   CFKCGRSGHWARECP 20



 Score = 31.6 bits (70), Expect = 0.53
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 302 CFSCGESGHFSRECPNKA 249
           C+ CGESGH +REC  +A
Sbjct: 158 CYRCGESGHLARECTIEA 175



 Score = 28.9 bits (63), Expect = 3.4
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -1

Query: 302 CFSCGESGHFSREC 261
           C+ CGESGH +++C
Sbjct: 54  CYRCGESGHLAKDC 67



 Score = 28.1 bits (61), Expect = 5.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 302 CFSCGESGHFSREC 261
           C+SCGE GH  ++C
Sbjct: 119 CYSCGEFGHIQKDC 132



 Score = 27.3 bits (59), Expect = 10.0
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -1

Query: 302 CFSCGESGHFSREC 261
           C++CG+ GH +R+C
Sbjct: 98  CYNCGKPGHLARDC 111



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>CNBP_PONPY (Q5R5R5) Cellular nucleic acid-binding protein (CNBP) (Zinc finger|
           protein 9)
          Length = 177

 Score = 33.9 bits (76), Expect = 0.11
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -1

Query: 302 CFSCGESGHFSRECP 258
           CF CG SGH++RECP
Sbjct: 6   CFKCGRSGHWARECP 20



 Score = 31.6 bits (70), Expect = 0.53
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 302 CFSCGESGHFSRECPNKA 249
           C+ CGESGH +REC  +A
Sbjct: 158 CYRCGESGHLARECTIEA 175



 Score = 28.9 bits (63), Expect = 3.4
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -1

Query: 302 CFSCGESGHFSREC 261
           C+ CGESGH +++C
Sbjct: 54  CYRCGESGHLAKDC 67



 Score = 28.1 bits (61), Expect = 5.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 302 CFSCGESGHFSREC 261
           C+SCGE GH  ++C
Sbjct: 119 CYSCGEFGHIQKDC 132



 Score = 27.3 bits (59), Expect = 10.0
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -1

Query: 302 CFSCGESGHFSREC 261
           C++CG+ GH +R+C
Sbjct: 98  CYNCGKPGHLARDC 111



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>CNBP_HUMAN (P62633) Cellular nucleic acid-binding protein (CNBP) (Zinc finger|
           protein 9)
          Length = 177

 Score = 33.9 bits (76), Expect = 0.11
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -1

Query: 302 CFSCGESGHFSRECP 258
           CF CG SGH++RECP
Sbjct: 6   CFKCGRSGHWARECP 20



 Score = 31.6 bits (70), Expect = 0.53
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 302 CFSCGESGHFSRECPNKA 249
           C+ CGESGH +REC  +A
Sbjct: 158 CYRCGESGHLARECTIEA 175



 Score = 28.9 bits (63), Expect = 3.4
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -1

Query: 302 CFSCGESGHFSREC 261
           C+ CGESGH +++C
Sbjct: 54  CYRCGESGHLAKDC 67



 Score = 28.1 bits (61), Expect = 5.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 302 CFSCGESGHFSREC 261
           C+SCGE GH  ++C
Sbjct: 119 CYSCGEFGHIQKDC 132



 Score = 27.3 bits (59), Expect = 10.0
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -1

Query: 302 CFSCGESGHFSREC 261
           C++CG+ GH +R+C
Sbjct: 98  CYNCGKPGHLARDC 111



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>CNBP_MOUSE (P53996) Cellular nucleic acid-binding protein (CNBP) (Zinc finger|
           protein 9)
          Length = 178

 Score = 33.9 bits (76), Expect = 0.11
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -1

Query: 302 CFSCGESGHFSRECP 258
           CF CG SGH++RECP
Sbjct: 6   CFKCGRSGHWARECP 20



 Score = 31.6 bits (70), Expect = 0.53
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 302 CFSCGESGHFSRECPNKA 249
           C+ CGESGH +REC  +A
Sbjct: 159 CYRCGESGHLARECTIEA 176



 Score = 28.9 bits (63), Expect = 3.4
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -1

Query: 302 CFSCGESGHFSREC 261
           C+ CGESGH +++C
Sbjct: 54  CYRCGESGHLAKDC 67



 Score = 28.1 bits (61), Expect = 5.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 302 CFSCGESGHFSREC 261
           C+SCGE GH  ++C
Sbjct: 120 CYSCGEFGHIQKDC 133



 Score = 27.3 bits (59), Expect = 10.0
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -1

Query: 302 CFSCGESGHFSREC 261
           C++CG+ GH +R+C
Sbjct: 99  CYNCGKPGHLARDC 112



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>ZCHC5_HUMAN (Q8N8U3) Zinc finger CCHC domain-containing protein 5|
          Length = 475

 Score = 33.9 bits (76), Expect = 0.11
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -1

Query: 302 CFSCGESGHFSRECPNKAH*AAQ 234
           C  CG  GHF+R+CP K H A Q
Sbjct: 445 CLYCGYPGHFARDCPVKPHQALQ 467



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>RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif protein 4) (Lark|
           homolog)
          Length = 359

 Score = 33.5 bits (75), Expect = 0.14
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -1

Query: 305 GCFSCGESGHFSRECP 258
           GC+ CG+ GH+S+ECP
Sbjct: 161 GCYRCGKEGHWSKECP 176



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>RBM4B_RAT (Q64LC9) RNA-binding protein 4B (RNA-binding motif protein 4B)|
           (RNA-binding protein 30) (RNA-binding motif protein 30)
           (Zinc-responsive protein ZD7)
          Length = 357

 Score = 33.5 bits (75), Expect = 0.14
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -1

Query: 305 GCFSCGESGHFSRECP 258
           GC+ CG+ GH+S+ECP
Sbjct: 161 GCYRCGKEGHWSKECP 176



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>RBM4B_MOUSE (Q8VE92) RNA-binding protein 4B (RNA-binding motif protein 4B)|
           (RNA-binding protein 30) (RNA-binding motif protein 30)
          Length = 357

 Score = 33.5 bits (75), Expect = 0.14
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -1

Query: 305 GCFSCGESGHFSRECP 258
           GC+ CG+ GH+S+ECP
Sbjct: 161 GCYRCGKEGHWSKECP 176



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>RBM4B_HUMAN (Q9BQ04) RNA-binding protein 4B (RNA-binding motif protein 4B)|
           (RNA-binding protein 30) (RNA-binding motif protein 30)
          Length = 359

 Score = 33.5 bits (75), Expect = 0.14
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -1

Query: 305 GCFSCGESGHFSRECP 258
           GC+ CG+ GH+S+ECP
Sbjct: 161 GCYRCGKEGHWSKECP 176



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>RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif protein 4)|
           (RNA-binding motif protein 4a)
          Length = 362

 Score = 33.5 bits (75), Expect = 0.14
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -1

Query: 305 GCFSCGESGHFSRECP 258
           GC+ CG+ GH+S+ECP
Sbjct: 161 GCYRCGKEGHWSKECP 176



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>RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif protein 4)|
           (RNA-binding motif protein 4a) (Lark homolog) (hLark)
          Length = 364

 Score = 33.5 bits (75), Expect = 0.14
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -1

Query: 305 GCFSCGESGHFSRECP 258
           GC+ CG+ GH+S+ECP
Sbjct: 161 GCYRCGKEGHWSKECP 176



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>GAG_SRV1 (P04022) Gag polyprotein (Core polyprotein) [Contains: Core protein|
           p10; Core phosphoprotein pp18; Core protein p12; Core
           protein p27; Core protein p14; Core protein p4]
          Length = 657

 Score = 33.5 bits (75), Expect = 0.14
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 311 GGGCFSCGESGHFSRECPNKAH 246
           GG CF CG  GHF++ C    H
Sbjct: 546 GGCCFKCGRKGHFAKNCHEHIH 567



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>RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif protein 4)|
           (RNA-binding motif protein 4a) (Lark homolog) (mLark)
          Length = 361

 Score = 33.5 bits (75), Expect = 0.14
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -1

Query: 305 GCFSCGESGHFSRECP 258
           GC+ CG+ GH+S+ECP
Sbjct: 161 GCYRCGKEGHWSKECP 176



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>GAG_BLVJ (P03344) Gag polyprotein [Contains: Core protein p15 (Matrix|
           protein); Core protein p24; Core protein p12]
          Length = 391

 Score = 33.1 bits (74), Expect = 0.18
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 308 GGCFSCGESGHFSRECPNKAH*AAQPVRSECPV 210
           G C+ C + GH++R+CP K   A  P    CP+
Sbjct: 344 GPCYRCLKEGHWARDCPTK---ATGPPPGPCPI 373



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>CNBP_CHICK (O42395) Cellular nucleic acid-binding protein (CNBP) (Zinc finger|
           protein 9)
          Length = 172

 Score = 32.7 bits (73), Expect = 0.24
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -1

Query: 302 CFSCGESGHFSRECP 258
           CF CG +GH++RECP
Sbjct: 6   CFKCGRTGHWARECP 20



 Score = 31.6 bits (70), Expect = 0.53
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 302 CFSCGESGHFSRECPNKA 249
           C+ CGESGH +REC  +A
Sbjct: 153 CYRCGESGHLARECTIEA 170



 Score = 28.9 bits (63), Expect = 3.4
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -1

Query: 302 CFSCGESGHFSREC 261
           C+ CGESGH +++C
Sbjct: 48  CYRCGESGHLAKDC 61



 Score = 28.1 bits (61), Expect = 5.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 302 CFSCGESGHFSREC 261
           C+SCGE GH  ++C
Sbjct: 114 CYSCGEFGHIQKDC 127



 Score = 27.3 bits (59), Expect = 10.0
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -1

Query: 302 CFSCGESGHFSREC 261
           C++CG+ GH +R+C
Sbjct: 93  CYNCGKPGHLARDC 106



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>GIS2_YEAST (P53849) Zinc-finger protein GIS2|
          Length = 153

 Score = 32.3 bits (72), Expect = 0.31
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -1

Query: 302 CFSCGESGHFSRECP 258
           CF+C ++GH SRECP
Sbjct: 67  CFNCNQTGHISRECP 81



 Score = 31.6 bits (70), Expect = 0.53
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = -1

Query: 302 CFSCGESGHFSRECPN 255
           C++CG++GH SR+C N
Sbjct: 118 CYTCGQAGHMSRDCQN 133



 Score = 30.0 bits (66), Expect = 1.5
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -1

Query: 302 CFSCGESGHFSRECP 258
           C++C E+GH S++CP
Sbjct: 137 CYNCNETGHISKDCP 151



 Score = 27.7 bits (60), Expect = 7.6
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = -1

Query: 302 CFSCGESGHFSRECP-NKAH*AAQP--VRSECPVPLRS 198
           C++CGE+GH   EC   +     Q   +  ECP P ++
Sbjct: 49  CYNCGETGHVRSECTVQRCFNCNQTGHISRECPEPKKT 86



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>POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from transposon TNT|
           1-94 [Includes: Protease (EC 3.4.23.-); Reverse
           transcriptase (EC 2.7.7.49); Endonuclease]
          Length = 1328

 Score = 32.3 bits (72), Expect = 0.31
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -1

Query: 302 CFSCGESGHFSRECPN 255
           C++C + GHF R+CPN
Sbjct: 232 CYNCNQPGHFKRDCPN 247



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>ZCHC9_HUMAN (Q8N567) Zinc finger CCHC domain-containing protein 9|
          Length = 271

 Score = 32.3 bits (72), Expect = 0.31
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -1

Query: 302 CFSCGESGHFSRECPN 255
           CF CGE GH SR CP+
Sbjct: 186 CFVCGEMGHLSRSCPD 201



 Score = 28.1 bits (61), Expect = 5.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 311 GGGCFSCGESGHFSRECP 258
           GGGC  CG   H  ++CP
Sbjct: 210 GGGCKLCGSVEHLKKDCP 227



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>ZCHC9_MOUSE (Q8R1J3) Zinc finger CCHC domain-containing protein 9|
          Length = 273

 Score = 32.3 bits (72), Expect = 0.31
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -1

Query: 302 CFSCGESGHFSRECPN 255
           CF CGE GH SR CP+
Sbjct: 186 CFVCGEMGHLSRSCPD 201



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>GAG_GALV (P21416) Gag polyprotein [Contains: Core protein p15; Core protein|
           p12; Core protein p30; Core protein p10]
          Length = 519

 Score = 32.0 bits (71), Expect = 0.40
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1

Query: 302 CFSCGESGHFSRECPNKAH 246
           C  C E GH++RECP K H
Sbjct: 490 CAYCKEKGHWARECPRKKH 508



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>GAK6_HUMAN (P62685) HERV-K_8p23.1 provirus ancestral Gag polyprotein (Gag|
           polyprotein) (HERV-K115 Gag protein) [Contains: Matrix
           protein; Capsid protein; Nucleocapsid protein]
          Length = 646

 Score = 31.6 bits (70), Expect = 0.53
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 311 GGGCFSCGESGHFSRECP 258
           GG C++CG+ GH  + CP
Sbjct: 542 GGKCYNCGQIGHLKKNCP 559



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>GAK5_HUMAN (P62684) HERV-K_19p13.11 provirus ancestral Gag polyprotein (Gag|
           polyprotein) (HERV-K113 Gag protein) [Contains: Matrix
           protein; Capsid protein; Nucleocapsid protein]
          Length = 665

 Score = 31.6 bits (70), Expect = 0.53
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 311 GGGCFSCGESGHFSRECP 258
           GG C++CG+ GH  + CP
Sbjct: 542 GGKCYNCGQIGHLKKNCP 559



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>GAK4_HUMAN (P63126) HERV-K_6q14.1 provirus ancestral Gag polyprotein (Gag|
           polyprotein) (HERV-K109 Gag protein) (HERV-K(C6) Gag
           protein) [Contains: Matrix protein; Capsid protein;
           Nucleocapsid protein]
          Length = 665

 Score = 31.6 bits (70), Expect = 0.53
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 311 GGGCFSCGESGHFSRECP 258
           GG C++CG+ GH  + CP
Sbjct: 542 GGKCYNCGQIGHLKKNCP 559



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>GAK3_HUMAN (Q9YNA8) HERV-K_19q12 provirus ancestral Gag polyprotein (Gag|
           polyprotein) (HERV-K(C19) Gag protein) [Contains: Matrix
           protein; Capsid protein; Nucleocapsid protein]
          Length = 665

 Score = 31.6 bits (70), Expect = 0.53
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 311 GGGCFSCGESGHFSRECP 258
           GG C++CG+ GH  + CP
Sbjct: 542 GGKCYNCGQIGHLKKNCP 559



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>GAK1_HUMAN (P62683) HERV-K_12q14.1 provirus ancestral Gag polyprotein (Gag|
           polyprotein) [Contains: Matrix protein; Capsid protein;
           Nucleocapsid protein]
          Length = 665

 Score = 31.6 bits (70), Expect = 0.53
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 311 GGGCFSCGESGHFSRECP 258
           GG C++CG+ GH  + CP
Sbjct: 542 GGKCYNCGQIGHLKKNCP 559



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>GAK12_HUMAN (P63130) HERV-K_1q22 provirus ancestral Gag polyprotein (Gag|
           polyprotein) (HERV-K102 Gag protein) (HERV-K(III) Gag
           protein) [Contains: Matrix protein; Capsid protein;
           Nucleocapsid protein]
          Length = 665

 Score = 31.6 bits (70), Expect = 0.53
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 311 GGGCFSCGESGHFSRECP 258
           GG C++CG+ GH  + CP
Sbjct: 542 GGKCYNCGQIGHLKKNCP 559



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>GAK11_HUMAN (P63145) HERV-K_22q11.21 provirus ancestral Gag polyprotein (Gag|
           polyprotein) (HERV-K101 Gag protein) [Contains: Matrix
           protein; Capsid protein; Nucleocapsid protein]
          Length = 665

 Score = 31.6 bits (70), Expect = 0.53
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 311 GGGCFSCGESGHFSRECP 258
           GG C++CG+ GH  + CP
Sbjct: 542 GGKCYNCGQIGHLKKNCP 559



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>GAK10_HUMAN (P87889) HERV-K_5q33.3 provirus ancestral Gag polyprotein (Gag|
           polyprotein) (HERV-K10 Gag protein) (HERV-K107 Gag
           protein) [Contains: Matrix protein; Capsid protein;
           Nucleocapsid protein]
          Length = 665

 Score = 31.6 bits (70), Expect = 0.53
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 311 GGGCFSCGESGHFSRECP 258
           GG C++CG+ GH  + CP
Sbjct: 542 GGKCYNCGQIGHLKKNCP 559



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>ZCH11_HUMAN (Q5TAX3) Zinc finger CCHC domain-containing protein 11|
          Length = 1644

 Score = 31.6 bits (70), Expect = 0.53
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 8/35 (22%)
 Frame = -1

Query: 302  CFSCGESGHFSRECP--------NKAH*AAQPVRS 222
            CF CG++GH  RECP        N +  AAQ VR+
Sbjct: 1359 CFICGDAGHVRRECPEVKLARQRNSSVAAAQLVRN 1393



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>GAG_BLVAU (P25058) Gag polyprotein [Contains: Core protein p15 (Matrix|
           protein); Core protein p24; Core protein p12]
          Length = 391

 Score = 31.6 bits (70), Expect = 0.53
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 308 GGCFSCGESGHFSRECPNKAH*AAQPVRSECPV 210
           G C+ C + GH++R+CP K      P    CP+
Sbjct: 344 GPCYRCLKEGHWARDCPTK---TTGPPPGPCPI 373



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>COAT_SOCMV (P15627) Coat protein|
          Length = 441

 Score = 31.2 bits (69), Expect = 0.69
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 302 CFSCGESGHFSRECPNKAH*AAQPVR 225
           C+ C E GH++ ECP K +  AQ ++
Sbjct: 383 CWLCHEEGHYANECPKKDNKKAQTLK 408



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>GLH4_CAEEL (O76743) ATP-dependent RNA helicase glh-4 (EC 3.6.1.-) (Germline|
           helicase 4)
          Length = 1156

 Score = 31.2 bits (69), Expect = 0.69
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -1

Query: 305 GCFSCGESGHFSREC 261
           GC +CGE GH S+EC
Sbjct: 571 GCHNCGEEGHISKEC 585



 Score = 30.8 bits (68), Expect = 0.90
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -1

Query: 308 GGCFSCGESGHFSRECPNK 252
           G C +CG+ GHF+++C N+
Sbjct: 639 GPCRNCGQEGHFAKDCQNE 657



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>GAG_HTL1M (P14077) Gag polyprotein [Contains: Major core protein p19; Major|
           core protein p24; Nucleic acid-binding protein p15]
          Length = 428

 Score = 30.8 bits (68), Expect = 0.90
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 302 CFSCGESGHFSRECPNKAH*AAQPVRSECPV 210
           CF CG++GH+SR+C        +P    CP+
Sbjct: 356 CFRCGKAGHWSRDCTQ-----PRPPPGPCPL 381



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>Y493_RICPR (Q9ZD54) Putative aldolase class 2 protein RP493|
          Length = 231

 Score = 30.8 bits (68), Expect = 0.90
 Identities = 23/85 (27%), Positives = 40/85 (47%)
 Frame = -1

Query: 305 GCFSCGESGHFSRECPNKAH*AAQPVRSECPVPLRSFSYRLTLQQVIHIPISISICRRSV 126
           G  +CG++ H   E     +   Q  +++C +         T+QQ + IP S+ IC+++V
Sbjct: 159 GAITCGKTIH---EAMFYTYHLEQACKTQCLL-------NSTIQQELIIP-SVEICKKTV 207

Query: 125 TPCFP*EEESTMRDWFQ*YCWWRVV 51
                 EE+   RDW     W R++
Sbjct: 208 KDLLSFEEDLGKRDW---EAWLRLI 229



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>GAG_HTL1C (P14076) Gag polyprotein [Contains: Major core protein p19; Major|
           core protein p24; Nucleic acid-binding protein p15]
          Length = 429

 Score = 30.8 bits (68), Expect = 0.90
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 302 CFSCGESGHFSRECPNKAH*AAQPVRSECPV 210
           CF CG++GH+SR+C        +P    CP+
Sbjct: 357 CFRCGKAGHWSRDCTQ-----PRPPPGPCPL 382



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>GAG_HTL1A (P03345) Gag polyprotein [Contains: Major core protein p19; Major|
           core protein p24; Nucleic acid-binding protein p15]
          Length = 429

 Score = 30.8 bits (68), Expect = 0.90
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 302 CFSCGESGHFSRECPNKAH*AAQPVRSECPV 210
           CF CG++GH+SR+C        +P    CP+
Sbjct: 357 CFRCGKAGHWSRDCTQ-----PRPPPGPCPL 382



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>GAK18_HUMAN (P62690) HERV-K_22q11.23 provirus ancestral Gag polyprotein (Gag|
           polyprotein) [Contains: Matrix protein; Capsid protein;
           Nucleocapsid protein]
          Length = 622

 Score = 30.8 bits (68), Expect = 0.90
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -1

Query: 311 GGGCFSCGESGHFSRECP--NKAH*AAQPVRSE 219
           G  C++CG+ GH  R CP  NK +   Q + S+
Sbjct: 589 GKKCYNCGQIGHLKRSCPGLNKQNIINQAINSK 621



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>GAG_RSVP (P03322) Gag polyprotein [Contains: Core protein p19; Core protein|
           p2A; Core protein p2B; Core protein p10; Capsid protein
           p27; Inner coat protein p12; Protease p15 (EC 3.4.23.-)]
          Length = 701

 Score = 30.8 bits (68), Expect = 0.90
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 308 GGCFSCGESGHFSRECPNK 252
           G C++CG  GH+  +CP K
Sbjct: 507 GLCYTCGSPGHYQAQCPKK 525



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>GAG_HV2SB (P12450) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 519

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 305 GCFSCGESGHFSRECPNK 252
           GC+ CG+SGH    CP++
Sbjct: 409 GCWKCGKSGHIMANCPDR 426



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>GAG_MMTVC (P11284) Gag polyprotein [Contains: Protein p10; Phosphorylated|
           protein pp21; Protein p3; Protein p8; Protein n; Major
           core protein p27; Nucleic acid-binding protein p14]
          Length = 590

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 311 GGGCFSCGESGHFSREC 261
           G  CFSCG++GH  R+C
Sbjct: 523 GPVCFSCGKTGHIKRDC 539



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>ZCHC4_XENLA (Q6DCD7) Zinc finger CCHC domain-containing protein 4|
          Length = 489

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -1

Query: 311 GGGCFSCGESGHFSRECPN 255
           G GCF CG  GH  R CP+
Sbjct: 428 GDGCFLCGGKGHKRRGCPH 446



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>COAT_FMVD (P09519) Probable coat protein|
          Length = 489

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 302 CFSCGESGHFSRECPNK 252
           C+ C E GH++ ECPN+
Sbjct: 411 CWICTEEGHYANECPNR 427



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>BYR3_SCHPO (P36627) Cellular nucleic acid-binding protein homolog|
          Length = 179

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -1

Query: 311 GGGCFSCGESGHFSREC 261
           G  C++CGE+GH +REC
Sbjct: 16  GPRCYNCGENGHQAREC 32



 Score = 29.3 bits (64), Expect = 2.6
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -1

Query: 302 CFSCGESGHFSRECPN 255
           C++CG +GH  R+CP+
Sbjct: 60  CYACGTAGHLVRDCPS 75



 Score = 27.7 bits (60), Expect = 7.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 311 GGGCFSCGESGHFSREC 261
           G  C+ CG  GH +R+C
Sbjct: 82  GAECYKCGRVGHIARDC 98



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>POL_HV2SB (P12451) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1461

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 305 GCFSCGESGHFSRECPNK 252
           GC+ CG+SGH    CP++
Sbjct: 409 GCWKCGKSGHIMANCPDR 426



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>GAG_HV2NZ (P05891) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 518

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 305 GCFSCGESGHFSRECPNK 252
           GC+ CG+SGH    CP++
Sbjct: 408 GCWKCGKSGHVMANCPDR 425



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>POL_HV2NZ (P05962) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1460

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 305 GCFSCGESGHFSRECPNK 252
           GC+ CG+SGH    CP++
Sbjct: 408 GCWKCGKSGHVMANCPDR 425



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>POL_HV2D1 (P17757) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1461

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 305 GCFSCGESGHFSRECPNK 252
           GC+ CG+SGH    CP +
Sbjct: 410 GCWKCGKSGHIMANCPER 427



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>GAG_JSRV (P31622) Gag polyprotein [Contains: Core protein p10; Core protein|
           p18; Core protein p12; Core protein p27; Core protein
           p14; Core protein p4]
          Length = 612

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 305 GCFSCGESGHFSRECPNKAH*AAQPVRSECP 213
           GCF CG+ GH +  CP K H  +    + CP
Sbjct: 508 GCFVCGQPGHRAAVCPQK-HQTSVNTPNLCP 537



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>GAG_HV2D1 (P17756) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 520

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 305 GCFSCGESGHFSRECPNK 252
           GC+ CG+SGH    CP +
Sbjct: 410 GCWKCGKSGHIMANCPER 427



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>GAG_SIVVT (P05892) Gag polyprotein [Contains: Core protein p17; Core protein|
           p24; Core protein p15]
          Length = 519

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -1

Query: 302 CFSCGESGHFSRECPNKAH*AAQPVRSEC 216
           C++CG+ GH  R+CP       +P +++C
Sbjct: 399 CYNCGKFGHMQRQCP-------EPRKTKC 420



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>GAG_HTLV2 (P03346) Gag polyprotein [Contains: Core protein p15 (p19); Core|
           protein p24; Core protein p12 (p15)]
          Length = 432

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 302 CFSCGESGHFSRECPNKAH*AAQPVRSECPV 210
           CF CG+ GH+SR+C        +P    CP+
Sbjct: 362 CFRCGKVGHWSRDCTQ-----PRPPPGPCPL 387



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>ZCHC6_MOUSE (Q5BLK4) Zinc finger CCHC domain-containing protein 6|
          Length = 1491

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 302  CFSCGESGHFSRECP 258
            CF CG  GH  +ECP
Sbjct: 1449 CFICGREGHIKKECP 1463



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>GAK8_HUMAN (Q9HDB9) HERV-K_3q12.3 provirus ancestral Gag polyprotein (Gag|
           polyprotein) (HERV-K(II) Gag protein) [Contains: Matrix
           protein; Capsid protein; Nucleocapsid protein]
          Length = 666

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 311 GGGCFSCGESGHFSRECP 258
           G  C++CG+ GH  R CP
Sbjct: 541 GKKCYNCGQIGHLKRSCP 558



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>POL_HV2KR (Q74120) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1462

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 305 GCFSCGESGHFSRECPNK 252
           GC+ CG+SGH    CP +
Sbjct: 410 GCWKCGKSGHVMANCPER 427



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>ZCHC6_HUMAN (Q5VYS8) Zinc finger CCHC domain-containing protein 6|
          Length = 1495

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 302  CFSCGESGHFSRECP 258
            CF CG  GH  +ECP
Sbjct: 1453 CFICGREGHIKKECP 1467



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>GAG_HV2KR (Q74119) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 520

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 305 GCFSCGESGHFSRECPNK 252
           GC+ CG+SGH    CP +
Sbjct: 410 GCWKCGKSGHVMANCPER 427



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>POL_COYMV (P19199) Putative polyprotein [Contains: Coat protein; Protease (EC|
           3.4.23.-); Reverse transcriptase (EC 2.7.7.49);
           Ribonuclease H (EC 3.1.26.4)]
          Length = 1886

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 302 CFSCGESGHFSRECPNK 252
           C+ CG+ GH++ +C NK
Sbjct: 881 CYICGQEGHYANQCRNK 897



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>GAG_IPMA (P11365) Retrovirus-related Gag polyprotein [Contains: Protease (EC|
           3.4.23.-)]
          Length = 827

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -1

Query: 302 CFSCGESGHFSREC 261
           CF+CG+ GHF ++C
Sbjct: 460 CFNCGKPGHFKKDC 473



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>GAG_MMTVB (P10258) Gag polyprotein [Contains: Protein p10; Phosphorylated|
           protein pp21; Protein p3; Protein p8; Protein n; Major
           core protein p27; Nucleic acid-binding protein p14]
          Length = 590

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -1

Query: 311 GGGCFSCGESGHFSRECPNK 252
           G  CFSCG++GH  ++C ++
Sbjct: 523 GPVCFSCGKTGHIRKDCKDE 542



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>POL_HV2D2 (P15833) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1464

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 305 GCFSCGESGHFSRECPNK 252
           GC+ CG++GH   +CP +
Sbjct: 409 GCWKCGKTGHIMSKCPER 426



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>POL_HV2ST (P20876) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1462

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 305 GCFSCGESGHFSRECPNK 252
           GC+ CG++GH   +CP +
Sbjct: 410 GCWKCGKAGHIMAKCPER 427



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>GAG_SIVVG (P27978) Gag polyprotein [Contains: Core protein p17; Core protein|
           p24; Core protein p15]
          Length = 521

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 302 CFSCGESGHFSRECP 258
           C++CG+ GH  R+CP
Sbjct: 404 CYNCGKFGHMQRQCP 418



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>TENX_HUMAN (P22105) Tenascin-X precursor (TN-X) (Hexabrachion-like protein)|
          Length = 4289

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 138  TYTNTDRYMYDLLQSQAVGKGTKGNGALRSDGLR 239
            TYT+  R++++ LQ Q +G    G   +  DGLR
Sbjct: 932  TYTSVARHIHEYLQRQVLGSSADGALLVSLDGLR 965



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>GAG_SIVV1 (P27972) Gag polyprotein [Contains: Core protein p17; Core protein|
           p24; Core protein p15]
          Length = 520

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 302 CFSCGESGHFSRECP 258
           C++CG+ GH  R+CP
Sbjct: 400 CYNCGKFGHMQRQCP 414



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>GAG_HV2ST (P20874) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 520

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 305 GCFSCGESGHFSRECPNK 252
           GC+ CG++GH   +CP +
Sbjct: 410 GCWKCGKAGHIMAKCPER 427



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>GAG_HV2D2 (P15832) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 520

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 305 GCFSCGESGHFSRECPNK 252
           GC+ CG++GH   +CP +
Sbjct: 409 GCWKCGKTGHIMSKCPER 426



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>GAG_EIAVY (P69732) Gag polyprotein [Contains: Matrix protein p15; Capsid|
           protein p26 (CA) (Major core protein p26); Nucleocapsid
           protein p11; p9]
          Length = 486

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
 Frame = -1

Query: 302 CFSCGESGHFSREC---PNKAH*AAQ--PVRSECPVPLRSFSYRLTLQQ 171
           CF C + GHFS++C   P      AQ  P +   P+  +S   +  +Q+
Sbjct: 402 CFKCKQPGHFSKQCRSVPKNGKQGAQGRPQKQTFPIQQKSQHNKSVVQE 450



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>GAG_EIAVC (P69731) Gag polyprotein [Contains: Matrix protein p15; Capsid|
           protein p26 (CA) (Major core protein p26); Nucleocapsid
           protein p11; p9]
          Length = 486

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
 Frame = -1

Query: 302 CFSCGESGHFSREC---PNKAH*AAQ--PVRSECPVPLRSFSYRLTLQQ 171
           CF C + GHFS++C   P      AQ  P +   P+  +S   +  +Q+
Sbjct: 402 CFKCKQPGHFSKQCRSVPKNGKQGAQGRPQKQTFPIQQKSQHNKSVVQE 450



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>GAG_EIAV9 (P69730) Gag polyprotein [Contains: Matrix protein p15; Capsid|
           protein p26 (CA) (Major core protein p26); Nucleocapsid
           protein p11; p9]
          Length = 486

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
 Frame = -1

Query: 302 CFSCGESGHFSREC---PNKAH*AAQ--PVRSECPVPLRSFSYRLTLQQ 171
           CF C + GHFS++C   P      AQ  P +   P+  +S   +  +Q+
Sbjct: 402 CFKCKQPGHFSKQCRSVPKNGKQGAQGRPQKQTFPIQQKSQHNKSVVQE 450



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>POL_HV2G1 (P18042) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1463

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 305 GCFSCGESGHFSRECPNK 252
           GC+ CG++GH   +CP +
Sbjct: 411 GCWKCGKTGHVMAKCPER 428



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>GAG_SIVSP (P19504) Gag polyprotein [Contains: Core protein p17; Core protein|
           p24]
          Length = 507

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 305 GCFSCGESGHFSRECPNK 252
           GC+ CG++GH   +CP +
Sbjct: 414 GCWKCGKAGHVMAKCPER 431



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>GAG_SIVS4 (P12496) Gag polyprotein [Contains: Core protein p17; Core protein|
           p24]
          Length = 507

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 305 GCFSCGESGHFSRECPNK 252
           GC+ CG++GH   +CP +
Sbjct: 414 GCWKCGKTGHVMAKCPER 431



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>GAG_HV2G1 (P18041) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 521

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 305 GCFSCGESGHFSRECPNK 252
           GC+ CG++GH   +CP +
Sbjct: 411 GCWKCGKTGHVMAKCPER 428



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>GAG_SIVG1 (Q02843) Gag polyprotein [Contains: Core protein p17; Core protein|
           p24; Core protein p15]
          Length = 513

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 302 CFSCGESGHFSREC 261
           CF+CG+ GH  REC
Sbjct: 392 CFNCGKFGHMQREC 405



 Score = 28.5 bits (62), Expect = 4.5
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 302 CFSCGESGHFSRECPN 255
           CF CG+ GH +++C N
Sbjct: 413 CFKCGKIGHMAKDCKN 428



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>GAK2_HUMAN (Q7LDI9) HERV-K_7p22.1 provirus ancestral Gag polyprotein (Gag|
           polyprotein) (HERV-K(HML-2.HOM) Gag protein) (HERV-K108
           Gag protein) (HERV-K(C7) Gag protein) [Contains: Matrix
           protein; Capsid protein; Nucleocapsid protein]
          Length = 665

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 311 GGGCFSCGESGHFSRECP 258
           G  C++CG+ GH  + CP
Sbjct: 542 GRKCYNCGQIGHLKKNCP 559



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>RBBP6_MOUSE (P97868) Retinoblastoma-binding protein 6 (p53-associated cellular|
           protein of testis) (Proliferation potential-related
           protein) (Protein P2P-R)
          Length = 1790

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 302 CFSCGESGHFSRECP 258
           CF CG+ GH+ + CP
Sbjct: 162 CFRCGKPGHYIKNCP 176



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>POL_HV2RO (P04584) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1463

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 305 GCFSCGESGHFSRECPNK 252
           GC+ CG+ GH    CP++
Sbjct: 410 GCWKCGKPGHIMTNCPDR 427



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>ZCH13_HUMAN (Q8WW36) Zinc finger CCHC domain-containing protein 13|
          Length = 166

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 311 GGGCFSCGESGHFSREC 261
           G  C++CG SGH +++C
Sbjct: 64  GNICYNCGRSGHIAKDC 80



 Score = 28.1 bits (61), Expect = 5.8
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -1

Query: 299 FSCGESGHFSRECP 258
           F+CG SGH++R CP
Sbjct: 7   FACGHSGHWARGCP 20



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>ZCHC7_HUMAN (Q8N3Z6) Zinc finger CCHC domain-containing protein 7|
          Length = 542

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 302 CFSCGESGHFSRECPNK 252
           C+ C + GH+  ECP +
Sbjct: 349 CYHCAQKGHYGHECPER 365



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>ZCH10_HUMAN (Q8TBK6) Zinc finger CCHC domain-containing protein 10|
          Length = 192

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -1

Query: 302 CFSCGESGHFSRECPNKAH*AAQPVR-SECPVPLRSFSYRLTLQQVI 165
           C  C E GH++ EC  K     +P R +E    L+    RL LQQ I
Sbjct: 45  CQKCLEFGHWTYECTGKRKYLHRPSRTAELKKALKEKENRLLLQQSI 91



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>POL_HV2CA (P24107) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1461

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 305 GCFSCGESGHFSRECPNK 252
           GC+ CG+ GH    CP++
Sbjct: 410 GCWKCGKPGHIMTNCPDR 427



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>MSL5_YEAST (Q12186) Branchpoint-bridging protein MSL5 (MUD synthesis lethal 5|
           protein)
          Length = 476

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -1

Query: 302 CFSCGESGHFSREC 261
           C  CG++GHFSR+C
Sbjct: 299 CKICGQTGHFSRDC 312



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>RBBP6_HUMAN (Q7Z6E9) Retinoblastoma-binding protein 6 (p53-associated cellular|
           protein of testis) (Proliferation potential-related
           protein) (Protein P2P-R) (Retinoblastoma-binding Q
           protein 1) (Protein RBQ-1)
          Length = 1792

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 302 CFSCGESGHFSRECP 258
           CF CG+ GH+ + CP
Sbjct: 161 CFRCGKPGHYIKNCP 175



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>GAG_HV2RO (P04590) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 521

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 305 GCFSCGESGHFSRECPNK 252
           GC+ CG+ GH    CP++
Sbjct: 410 GCWKCGKPGHIMTNCPDR 427



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>GAG_HV2CA (P24106) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 520

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 305 GCFSCGESGHFSRECPNK 252
           GC+ CG+ GH    CP++
Sbjct: 410 GCWKCGKPGHIMTNCPDR 427



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>GAG_MLVFP (P26805) Gag polyprotein (Core polyprotein) [Contains: Matrix|
           protein p15; RNA-binding phosphoprotein p12; Capsid
           protein p30; Nucleocapsid protein p10]
          Length = 537

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 302 CFSCGESGHFSRECPNK 252
           C  C E GH++R+CP K
Sbjct: 503 CAYCKEKGHWARDCPKK 519



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>GAG_MLVFF (P26806) Gag polyprotein (Core polyprotein) [Contains: Matrix|
           protein p15; RNA-binding phosphoprotein p12; Capsid
           protein p30; Nucleocapsid protein p10]
          Length = 537

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 302 CFSCGESGHFSRECPNK 252
           C  C E GH++R+CP K
Sbjct: 503 CAYCKEKGHWARDCPKK 519



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>GAG_HV1MA (P04594) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 504

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 302 CFSCGESGHFSREC 261
           CF+CG+ GH +R C
Sbjct: 397 CFNCGKEGHLARNC 410



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>COAT_CAMVN (Q00956) Coat protein|
          Length = 488

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 302 CFSCGESGHFSRECPNK 252
           C+ C   GH++ ECPN+
Sbjct: 412 CWICNIEGHYANECPNR 428



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>COAT_CAMVC (P03543) Coat protein|
          Length = 488

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 302 CFSCGESGHFSRECPNK 252
           C+ C   GH++ ECPN+
Sbjct: 412 CWICNIEGHYANECPNR 428



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>POL_HV1BR (P03367) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1446

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 302 CFSCGESGHFSREC 261
           CF+CG+ GH +R C
Sbjct: 391 CFNCGKEGHIARNC 404



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>POL_HV1B5 (P04587) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1446

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 302 CFSCGESGHFSREC 261
           CF+CG+ GH +R C
Sbjct: 391 CFNCGKEGHIARNC 404



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>COAT_CERV (P05399) Probable coat protein|
          Length = 494

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 302 CFSCGESGHFSRECPNK 252
           C+ C   GH++ ECPN+
Sbjct: 420 CWVCNIEGHYANECPNR 436



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>POL_HV1RH (P05959) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1435

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 305 GCFSCGESGHFSRECPNK 252
           GC+ CG+ GH  ++C N+
Sbjct: 411 GCWKCGKEGHQMKDCTNE 428



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>POL_HV1JR (P20875) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1438

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 302 CFSCGESGHFSREC 261
           CF+CG+ GH +R C
Sbjct: 391 CFNCGKEGHIARNC 404



 Score = 27.3 bits (59), Expect = 10.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 305 GCFSCGESGHFSRECPNK 252
           GC+ CG+ GH  +EC  +
Sbjct: 411 GCWKCGKEGHQMKECTER 428



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>GAG_HV1RH (P05890) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 500

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 305 GCFSCGESGHFSRECPNK 252
           GC+ CG+ GH  ++C N+
Sbjct: 411 GCWKCGKEGHQMKDCTNE 428



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>POL_HV1C4 (P05960) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR)] (Fragment)
          Length = 549

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 302 CFSCGESGHFSREC 261
           CF+CG+ GH +R C
Sbjct: 391 CFNCGKEGHIARNC 404



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>ZCHC2_HUMAN (Q9C0B9) Zinc finger CCHC domain-containing protein 2 (Fragment)|
          Length = 899

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -1

Query: 302 CFSCGESGHFSRECPNKAH*AAQ 234
           C++CG SGH++++C   +  A Q
Sbjct: 854 CYNCGVSGHYAQDCKQSSMEANQ 876



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>POL_HV1J3 (P12498) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR)] (Fragment)
          Length = 531

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 302 CFSCGESGHFSREC 261
           CF+CG+ GH +R C
Sbjct: 391 CFNCGKEGHLARNC 404



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>COAT_CAMVS (P03542) Coat protein|
          Length = 489

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 302 CFSCGESGHFSRECPNK 252
           C+ C   GH++ ECPN+
Sbjct: 414 CWICNIEGHYANECPNR 430



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>COAT_CAMVD (P03544) Coat protein|
          Length = 490

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 302 CFSCGESGHFSRECPNK 252
           C+ C   GH++ ECPN+
Sbjct: 413 CWICNIEGHYANECPNR 429



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>POL_HV1MA (P04588) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1439

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 302 CFSCGESGHFSREC 261
           CF+CG+ GH +R C
Sbjct: 397 CFNCGKEGHLARNC 410



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>GAG_HV1BR (P03348) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 511

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 302 CFSCGESGHFSREC 261
           CF+CG+ GH +R C
Sbjct: 391 CFNCGKEGHIARNC 404



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>GAG_HV1B5 (P04593) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 511

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 302 CFSCGESGHFSREC 261
           CF+CG+ GH +R C
Sbjct: 391 CFNCGKEGHIARNC 404



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>ZCHC4_XENTR (Q66IH9) Zinc finger CCHC domain-containing protein 4|
          Length = 487

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 311 GGGCFSCGESGHFSRECPNKA 249
           G GCF CG   H  R CP+++
Sbjct: 428 GRGCFLCGGKDHKRRGCPHQS 448



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>GAG_HV1LW (Q70622) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 499

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 302 CFSCGESGHFSREC 261
           CF+CG+ GH +R C
Sbjct: 391 CFNCGKEGHIARNC 404



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>GAG_HV1J3 (P12494) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 499

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 302 CFSCGESGHFSREC 261
           CF+CG+ GH +R C
Sbjct: 391 CFNCGKEGHLARNC 404



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>GAG_HV1C4 (P05887) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 499

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 302 CFSCGESGHFSREC 261
           CF+CG+ GH +R C
Sbjct: 391 CFNCGKEGHIARNC 404



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>ZCHC2_MOUSE (Q69ZB8) Zinc finger CCHC domain-containing protein 2 (Fragment)|
          Length = 1168

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -1

Query: 302  CFSCGESGHFSRECPNKAH*AAQ 234
            C++CG SGH++++C   +  A Q
Sbjct: 1123 CYNCGVSGHYAQDCKQSSMEANQ 1145



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>POL_HV2BE (P18096) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1549

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 305 GCFSCGESGHFSRECPNK 252
           GC+ CG+ GH    CP +
Sbjct: 410 GCWKCGKPGHIMANCPER 427



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>GAG_SIVCZ (P17282) Gag polyprotein [Contains: Core protein p18; Core protein|
           p25; Core protein p16]
          Length = 508

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 302 CFSCGESGHFSREC 261
           CF+CG+ GH +R C
Sbjct: 402 CFNCGKEGHLARNC 415



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>GAG_HV2BE (P18095) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 520

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 305 GCFSCGESGHFSRECPNK 252
           GC+ CG+ GH    CP +
Sbjct: 410 GCWKCGKPGHIMANCPER 427



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>GAG_HV1JR (P20873) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 503

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 302 CFSCGESGHFSREC 261
           CF+CG+ GH +R C
Sbjct: 391 CFNCGKEGHIARNC 404



 Score = 27.3 bits (59), Expect = 10.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 305 GCFSCGESGHFSRECPNK 252
           GC+ CG+ GH  +EC  +
Sbjct: 411 GCWKCGKEGHQMKECTER 428



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>ZCHC4_HUMAN (Q9H5U6) Zinc finger CCHC domain-containing protein 4|
          Length = 513

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -1

Query: 305 GCFSCGESGHFSRECPNKA 249
           GCF CGE  H    CPN A
Sbjct: 444 GCFICGELDHKRSTCPNIA 462



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>GAG_MLVF5 (P26807) Gag polyprotein (Core polyprotein) [Contains: Matrix|
           protein p15; RNA-binding phosphoprotein p12; Capsid
           protein p30; Nucleocapsid protein p10]
          Length = 538

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 302 CFSCGESGHFSRECPNK 252
           C  C E GH++R+CP K
Sbjct: 504 CAYCKEKGHWARDCPKK 520



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>CPSF4_MOUSE (Q8BQZ5) Cleavage and polyadenylation specificity factor, 30 kDa|
           subunit (CPSF 30 kDa subunit) (Clipper homolog)
           (Clipper/CPSF 30K)
          Length = 211

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 302 CFSCGESGHFSRECPNKAH 246
           C+ CGE GH++  C  K H
Sbjct: 187 CYKCGEKGHYANRC-TKGH 204



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>YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III|
          Length = 2186

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -1

Query: 302 CFSCGESGHFSRECPNK 252
           CF C E GH +  CP K
Sbjct: 591 CFRCNEMGHIAWNCPKK 607



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>PHC2_MOUSE (Q9QWH1) Polyhomeotic-like protein 2 (mPH2) (Early development|
           regulatory protein 2) (p36)
          Length = 850

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 41  TSNKQHATSNTTGTNLASSILLPRGSTG 124
           TSN+   T+NT+GTN +S  +   G  G
Sbjct: 10  TSNRASVTTNTSGTNSSSGCISSSGGGG 37



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>CPSF4_HUMAN (O95639) Cleavage and polyadenylation specificity factor, 30 kDa|
           subunit (CPSF 30 kDa subunit) (NS1 effector
           domain-binding protein 1) (Neb-1) (No arches homolog)
          Length = 269

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 302 CFSCGESGHFSRECPNKAH 246
           C+ CGE GH++  C  K H
Sbjct: 245 CYKCGEKGHYANRC-TKGH 262



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>GAG_SIVM1 (P05894) Gag polyprotein [Contains: Core protein p17; Core protein|
           p24]
          Length = 506

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 305 GCFSCGESGHFSRECPNK 252
           GC+ CG+  H   +CPN+
Sbjct: 413 GCWKCGKMDHVMAKCPNR 430



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>POST_XENLA (P27536) Posterior protein (xPO)|
          Length = 555

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 302 CFSCGESGHFSRECPNKAH 246
           C+SCG+ GH +R C   A+
Sbjct: 415 CYSCGKYGHIARFCRTSAN 433



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>POL_HV1PV (P03368) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1446

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 302 CFSCGESGHFSREC 261
           CF+CG+ GH +R C
Sbjct: 391 CFNCGKEGHTARNC 404



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>POL_HV1B1 (P03366) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1446

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 302 CFSCGESGHFSREC 261
           CF+CG+ GH +R C
Sbjct: 391 CFNCGKEGHTARNC 404



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>GAG_VILVK (P35955) Gag polyprotein [Contains: Core protein p16; Core protein|
           p25; Core protein p14]
          Length = 442

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -1

Query: 302 CFSCGESGHFSREC 261
           C++CG+ GH +R+C
Sbjct: 387 CYNCGKPGHLARQC 400



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>GAG_VILV2 (P23425) Gag polyprotein [Contains: Core protein p16; Core protein|
           p25; Core protein p14]
          Length = 442

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -1

Query: 302 CFSCGESGHFSREC 261
           C++CG+ GH +R+C
Sbjct: 387 CYNCGKPGHLARQC 400



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>GAG_VILV1 (P23424) Gag polyprotein [Contains: Core protein p16; Core protein|
           p25; Core protein p14]
          Length = 442

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -1

Query: 302 CFSCGESGHFSREC 261
           C++CG+ GH +R+C
Sbjct: 387 CYNCGKPGHLARQC 400



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>GAG_VILV (P03352) Gag polyprotein [Contains: Core protein p16; Core protein|
           p25; Core protein p14]
          Length = 442

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -1

Query: 302 CFSCGESGHFSREC 261
           C++CG+ GH +R+C
Sbjct: 387 CYNCGKPGHLARQC 400



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>AIR1_YEAST (P40507) Protein AIR1 (Arginine methyltransferase-interacting RING|
           finger protein 1)
          Length = 360

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 302 CFSCGESGHFSRECPNK 252
           C++CG +GHF  +C  +
Sbjct: 175 CYNCGNAGHFGDDCAER 191



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>AIR2_YEAST (Q12476) Protein AIR2 (Arginine methyltransferase-interacting RING|
           finger protein 2)
          Length = 344

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 302 CFSCGESGHFSRECPNK 252
           C++CG  GHF  +C  K
Sbjct: 164 CYNCGGKGHFGDDCKEK 180



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>SFRS7_HUMAN (Q16629) Splicing factor, arginine/serine-rich 7 (Splicing factor|
           9G8)
          Length = 238

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 302 CFSCGESGHFSREC 261
           C+ CGE GH++ +C
Sbjct: 106 CYECGEKGHYAYDC 119



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>PEP7_YEAST (P32609) Vacuolar segregation protein PEP7 (Protein VAC1) (Vacuolar|
           protein sorting 19)
          Length = 515

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 197 FSYRLTLQQVIHIPISISICRRSVTPCF 114
           F Y +    ++HIPISI +C   +   F
Sbjct: 270 FEYNIQKDDLLHIPISIRLCSHCIDMLF 297



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>GAG_HV1PV (P03350) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 511

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 302 CFSCGESGHFSREC 261
           CF+CG+ GH +R C
Sbjct: 391 CFNCGKEGHTARNC 404



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>GAG_HV1B1 (P03347) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 511

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 302 CFSCGESGHFSREC 261
           CF+CG+ GH +R C
Sbjct: 391 CFNCGKEGHTARNC 404



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>GAG_SIVMS (P31634) Gag polyprotein [Contains: Core protein p17; Core protein|
           p24]
          Length = 510

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 305 GCFSCGESGHFSRECPNK 252
           GC+ CG+ GH   +CP +
Sbjct: 413 GCWKCGKPGHQMAKCPER 430



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>GAG_BIV27 (P19559) Gag polyprotein (p53) [Contains: Matrix protein p17;|
           Capsid protein p26; Nucleocapsid protein p14]
          Length = 476

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 311 GGGCFSCGESGHFSREC 261
           G  C+ CG++GH  R C
Sbjct: 402 GRRCYGCGKTGHLKRNC 418



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>GAG_BIV06 (P19558) Gag polyprotein (p53) [Contains: Matrix protein p17;|
           Capsid protein p26; Nucleocapsid protein p14]
          Length = 476

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 311 GGGCFSCGESGHFSREC 261
           G  C+ CG++GH  R C
Sbjct: 402 GRRCYGCGKTGHLKRNC 418



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>GAG_HV1H2 (P04591) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 499

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 302 CFSCGESGHFSREC 261
           CF+CG+ GH +R C
Sbjct: 391 CFNCGKEGHTARNC 404



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>YLE5_CAEEL (P46941) Hypothetical protein C38D4.5 in chromosome III|
          Length = 837

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 12/35 (34%), Positives = 23/35 (65%)
 Frame = +2

Query: 35  KITSNKQHATSNTTGTNLASSILLPRGSTG*HYGD 139
           +I S    ++S+++ TN++++  LPR S G +Y D
Sbjct: 30  EIMSESAESSSSSSQTNVSAANTLPRESNGQNYAD 64



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>SFRS7_MOUSE (Q8BL97) Splicing factor, arginine/serine-rich 7|
          Length = 267

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 302 CFSCGESGHFSREC 261
           C+ CGE GH++ +C
Sbjct: 135 CYECGEKGHYAYDC 148



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>POL_HV1H2 (P04585) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1434

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 302 CFSCGESGHFSREC 261
           CF+CG+ GH +R C
Sbjct: 391 CFNCGKEGHTARNC 404


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,552,879
Number of Sequences: 219361
Number of extensions: 660967
Number of successful extensions: 1806
Number of sequences better than 10.0: 149
Number of HSP's better than 10.0 without gapping: 1614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1805
length of database: 80,573,946
effective HSP length: 79
effective length of database: 63,244,427
effective search space used: 1517866248
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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