ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd15j22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KAPR_YEAST (P07278) cAMP-dependent protein kinase regulatory sub... 31 2.6
2DHYS_METKA (Q8TXD7) Probable deoxyhypusine synthase (EC 2.5.1.46... 30 4.4
3ERG6_YEAST (P25087) Sterol 24-C-methyltransferase (EC 2.1.1.41) ... 30 7.5
4ERG6_KLULA (Q6CYB3) Sterol 24-C-methyltransferase (EC 2.1.1.41) ... 30 7.5
5ERG6_CANGA (Q6FRZ7) Sterol 24-C-methyltransferase (EC 2.1.1.41) ... 30 7.5
6ERG6_ASHGO (Q759S7) Sterol 24-C-methyltransferase (EC 2.1.1.41) ... 30 7.5
7ERG6_CANAL (O74198) Sterol 24-C-methyltransferase (EC 2.1.1.41) ... 29 9.8

>KAPR_YEAST (P07278) cAMP-dependent protein kinase regulatory subunit (PKA|
           regulatory subunit)
          Length = 415

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +1

Query: 346 PQE*RSTTDLVNNNMNLPNISIILQFSSEYHTNKHNFANHIHKKRRCNYNANDFVMF 516
           P+E ++   L  N +N  N S  LQFS+ Y   +        K R   + A + V+F
Sbjct: 5   PKESQAELQLFQNEINAANPSDFLQFSANYFNKRLEQQRAFLKAREPEFKAKNIVLF 61



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>DHYS_METKA (Q8TXD7) Probable deoxyhypusine synthase (EC 2.5.1.46) (DHS)|
          Length = 297

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 196 ADEAPMIEVPGVLDQIVGGFIWVLIQTH 279
           ADE   I  PG+LD +VG  +W+  Q H
Sbjct: 162 ADEGVPIYSPGILDSMVGLHVWIHSQDH 189



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>ERG6_YEAST (P25087) Sterol 24-C-methyltransferase (EC 2.1.1.41)|
           (Delta(24)-sterol C-methyltransferase)
          Length = 382

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 502 HLHYNYIASFYEYGW 458
           H +YN +  FYEYGW
Sbjct: 70  HSYYNVVTDFYEYGW 84



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>ERG6_KLULA (Q6CYB3) Sterol 24-C-methyltransferase (EC 2.1.1.41)|
           (Delta(24)-sterol C-methyltransferase)
          Length = 371

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 502 HLHYNYIASFYEYGW 458
           H +YN +  FYEYGW
Sbjct: 71  HSYYNVVTDFYEYGW 85



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>ERG6_CANGA (Q6FRZ7) Sterol 24-C-methyltransferase (EC 2.1.1.41)|
           (Delta(24)-sterol C-methyltransferase)
          Length = 372

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 502 HLHYNYIASFYEYGW 458
           H +YN +  FYEYGW
Sbjct: 71  HSYYNVVTDFYEYGW 85



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>ERG6_ASHGO (Q759S7) Sterol 24-C-methyltransferase (EC 2.1.1.41)|
           (Delta(24)-sterol C-methyltransferase)
          Length = 373

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 502 HLHYNYIASFYEYGW 458
           H +YN +  FYEYGW
Sbjct: 72  HSYYNVVTDFYEYGW 86



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>ERG6_CANAL (O74198) Sterol 24-C-methyltransferase (EC 2.1.1.41)|
           (Delta(24)-sterol C-methyltransferase)
          Length = 376

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 502 HLHYNYIASFYEYGW 458
           H +YN +  FYEYGW
Sbjct: 74  HHYYNLVTDFYEYGW 88


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,132,042
Number of Sequences: 219361
Number of extensions: 1663550
Number of successful extensions: 3695
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3695
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5653129581
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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