ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd15j21 |
|---|---|
| Clone Library Name | barley_pub |
>CIPK1_ORYSA (Q6X4A2) CIPK-like protein 1 (EC 2.7.11.1) (OsCK1)| Length = 449 Score = 67.4 bits (163), Expect = 3e-11 Identities = 37/102 (36%), Positives = 62/102 (60%), Gaps = 4/102 (3%) Frame = -2 Query: 551 ELVS-SPSFDLSGLFEERGE---QLRFVSSAPVNTIISKLEEIAGQVSFTARTKDCQVSF 384 EL+S + + +L LFE + E + RF S P II+K+EE A + F + K+ ++ Sbjct: 322 ELISLNQALNLDNLFEAKKEYKRETRFTSQCPPKEIITKIEEAAKPLGFDIQKKNYKMRM 381 Query: 383 EATRNGHKGALAISTKIFQLTPELVMVQVCKKAGDTAEYRQF 258 E + G KG L ++T++FQ+ P L +V++ K GDT E+++F Sbjct: 382 ENLKAGRKGNLNVATEVFQVAPSLHVVELKKAKGDTLEFQKF 423
>CPK24_ARATH (Q9LDI3) CBL-interacting serine/threonine-protein kinase 24 (EC| 2.7.11.1) (SNF1-related kinase 3.11) (SALT OVERLY SENSITIVE 2 protein) Length = 446 Score = 62.8 bits (151), Expect = 6e-10 Identities = 39/126 (30%), Positives = 67/126 (53%), Gaps = 7/126 (5%) Frame = -2 Query: 539 SPSFDLSGLFEERGE----QLRFVSSAPVNTIISKLEEIAGQVSFTARTKDCQVSFEATR 372 S +LS LF+ R + Q RFVS + II+ +E +A + F + T++ + E Sbjct: 319 SQGLNLSALFDRRQDFVKRQTRFVSRREPSEIIANIEAVANSMGFKSHTRNFKTRLEGLS 378 Query: 371 NGHKGALAISTKIFQLTPELVMVQVCKKAGDTAEYRQF---CGSELKPGLRGLVDGLPED 201 + G LA+ +I+++ P L MV V K AG+T EY +F S+L+ + +G+P+ Sbjct: 379 SIKAGQLAVVIEIYEVAPSLFMVDVRKAAGETLEYHKFYKKLCSKLENIIWRATEGIPKS 438 Query: 200 GLPPTV 183 + T+ Sbjct: 439 EILRTI 444
>CPK15_ARATH (P92937) CBL-interacting serine/threonine-protein kinase 15 (EC| 2.7.11.1) (Serine/threonine-protein kinase ATPK10) (SOS2-like protein kinase PKS3) (SOS-interacting protein 2) (SNF1-related kinase 3.1) Length = 421 Score = 61.2 bits (147), Expect = 2e-09 Identities = 40/114 (35%), Positives = 60/114 (52%), Gaps = 7/114 (6%) Frame = -2 Query: 551 ELVS-SPSFDLSGLFE--ERGEQLRFVSSAPVNTIISKLEEIAGQVSFTARTKD----CQ 393 E++S S FDLSGLFE E E++RF S+ + I KL EI + R K+ + Sbjct: 308 EIISLSTGFDLSGLFEKGEEKEEMRFTSNREASEITEKLVEIGKDLKMKVRKKEHEWRVK 367 Query: 392 VSFEATRNGHKGALAISTKIFQLTPELVMVQVCKKAGDTAEYRQFCGSELKPGL 231 +S EAT + ++F++ P MV + K GDTAEY++ ++P L Sbjct: 368 MSAEAT--------VVEAEVFEIAPSYHMVVLKKSGGDTAEYKRVMKESIRPAL 413
>CIPK1_ARATH (Q8RWC9) CBL-interacting serine/threonine-protein kinase 1 (EC| 2.7.11.1) (SOS2-like protein kinase PKS13) (SNF1-related kinase 3.16) Length = 444 Score = 55.1 bits (131), Expect = 1e-07 Identities = 31/110 (28%), Positives = 59/110 (53%), Gaps = 6/110 (5%) Frame = -2 Query: 551 ELVSSPSF-DLSGLFEERG---EQLRFVSSAPVNTIISKLEEIAGQVSFTARTKDCQVSF 384 +L+ SF DLSG FE+ ++RF S++ ++ K+E ++ F+ + K ++ Sbjct: 322 QLIGMSSFLDLSGFFEQENVSERRIRFTSNSSAKDLLEKIETAVTEMGFSVQKKHAKLRV 381 Query: 383 EATRNGHKG--ALAISTKIFQLTPELVMVQVCKKAGDTAEYRQFCGSELK 240 + KG L+++ ++F++ P L +V++ K GD+ YRQ LK Sbjct: 382 KQEERNQKGQVGLSVTAEVFEIKPSLNVVELRKSYGDSCLYRQLYERLLK 431
>RPOB_DEHSC (Q3ZX01) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1273 Score = 33.1 bits (74), Expect = 0.54 Identities = 19/52 (36%), Positives = 28/52 (53%) Frame = +3 Query: 267 VFSSVSGFLAYLDHDELRRELEYLGGYGQRSLVPISCRLEAHLAILGARREA 422 +FS + + +L+HD+ R L +G QR VP+ R EA + G REA Sbjct: 595 IFSVAASLIPFLEHDDANRAL--MGANMQRQAVPL-LRAEAPMVATGMEREA 643
>RPOB_DEHE1 (Q3Z8V4) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1272 Score = 33.1 bits (74), Expect = 0.54 Identities = 19/52 (36%), Positives = 28/52 (53%) Frame = +3 Query: 267 VFSSVSGFLAYLDHDELRRELEYLGGYGQRSLVPISCRLEAHLAILGARREA 422 +FS + + +L+HD+ R L +G QR VP+ R EA + G REA Sbjct: 595 IFSVAASLIPFLEHDDANRAL--MGANMQRQAVPL-LRAEAPMVATGMEREA 643
>EPL1_ASPFU (Q4WDF1) Enhancer of polycomb-like protein 1| Length = 582 Score = 31.2 bits (69), Expect = 2.0 Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 4/79 (5%) Frame = +1 Query: 322 VSWNI-LVDMASAPLCPFLVASKLTWQSLVR---AVKLTCPAISSSLEMMVFTGALDTKR 489 + WN VD APL P + T+Q+ R +L P S S + M+ ALDT Sbjct: 384 IKWNEGYVDYTRAPLSP---PPEKTFQAAFRPAITTQLPTPPSSDSSDNMMLESALDTAN 440 Query: 490 NCSPRSSNSPDRSKLGEET 546 + S R P ++ E+T Sbjct: 441 SLSFRDKLVPRTWEMNEDT 459
>GLNA_GIBFU (Q9C2U9) Glutamine synthetase (EC 6.3.1.2) (Glutamate--ammonia| ligase) (GS) Length = 353 Score = 30.8 bits (68), Expect = 2.7 Identities = 14/33 (42%), Positives = 19/33 (57%) Frame = -1 Query: 231 SRSRGWPA*GWPSPDGECCLKF*RIYCGVKSSR 133 +R GWPA G+P+P GE YCGV + + Sbjct: 141 NRPYGWPAGGFPAPQGE-------YYCGVGTGK 166
>DYIN_DROME (Q24246) Dynein intermediate chain, cytosolic (DH IC) (Cytoplasmic| dynein intermediate chain) (Protein short wing) Length = 663 Score = 30.8 bits (68), Expect = 2.7 Identities = 15/47 (31%), Positives = 23/47 (48%) Frame = -2 Query: 497 EQLRFVSSAPVNTIISKLEEIAGQVSFTARTKDCQVSFEATRNGHKG 357 E L + APV+ ++S L + S + T+ S +AT NG G Sbjct: 56 EMLSSLGVAPVSEVLSSLSSVNSMTSDNSNTQTPDASLQATVNGQSG 102
>LATA_LATMA (P23631) Alpha-latrotoxin precursor (Alpha-LTX)| Length = 1401 Score = 30.4 bits (67), Expect = 3.5 Identities = 15/57 (26%), Positives = 28/57 (49%) Frame = +3 Query: 195 KAILRQAIHETSKTRLELTAAELPVFSSVSGFLAYLDHDELRRELEYLGGYGQRSLV 365 K +++ I T + + TA ++ + + S + YL + EY YG+RSL+ Sbjct: 1155 KLLIKYGIDVTIRNAYDKTALDIAIDAKFSNIVEYLKTKSGKFRREYKSSYGERSLL 1211
>COAE_DEIRA (Q9RT73) Dephospho-CoA kinase (EC 2.7.1.24) (Dephosphocoenzyme A| kinase) Length = 207 Score = 29.6 bits (65), Expect = 5.9 Identities = 22/59 (37%), Positives = 26/59 (44%) Frame = +3 Query: 366 PISCRLEAHLAILGARREANLPRDLLQLGDDGVHRRAGHETQLLAALLKQPGQIEAWRG 542 P+ RLE LA G RE L RD QL + RRA +L G +EA G Sbjct: 144 PLELRLERALARGGLTREDILARDARQLSSEEKRRRA-------TIVLDNSGPLEALEG 195
>CYSK2_BRAJU (O23735) Cysteine synthase (EC 2.5.1.47) (O-acetylserine| sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase) (OAS-TL) (OAS-TL6) Length = 324 Score = 29.6 bits (65), Expect = 5.9 Identities = 16/52 (30%), Positives = 26/52 (50%) Frame = -2 Query: 368 GHKGALAISTKIFQLTPELVMVQVCKKAGDTAEYRQFCGSELKPGLRGLVDG 213 G KGA+A + +I TP M+Q + + + + G E+ G G +DG Sbjct: 126 GMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTEGKIDG 177
>MYH7_RAT (P02564) Myosin heavy chain, cardiac muscle beta isoform (MyHC-beta)| Length = 1935 Score = 29.6 bits (65), Expect = 5.9 Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 3/45 (6%) Frame = +3 Query: 210 QAIHETSKTRLELTAAELPVFSSVSGFLAYLDHDE---LRRELEY 335 ++IHE K R +L A +L + S++ A L+H+E LR +LE+ Sbjct: 1521 KSIHELEKIRKQLEAEKLELQSALEEAEASLEHEEGKILRAQLEF 1565
>MYH7_PIG (P79293) Myosin heavy chain, cardiac muscle beta isoform (MyHC-beta)| Length = 1935 Score = 29.6 bits (65), Expect = 5.9 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 3/45 (6%) Frame = +3 Query: 210 QAIHETSKTRLELTAAELPVFSSVSGFLAYLDHDE---LRRELEY 335 + IHE K R +L A +L + S++ A L+H+E LR +LE+ Sbjct: 1521 KTIHELEKVRKQLEAEKLELQSALEESEASLEHEEGKILRAQLEF 1565
>GLNA_COLGL (Q12613) Glutamine synthetase (EC 6.3.1.2) (Glutamate--ammonia| ligase) (GS) Length = 360 Score = 29.6 bits (65), Expect = 5.9 Identities = 14/34 (41%), Positives = 19/34 (55%) Frame = -1 Query: 234 SSRSRGWPA*GWPSPDGECCLKF*RIYCGVKSSR 133 S+R GWPA G+P+P G YCGV + + Sbjct: 142 SNRPFGWPANGFPAPQGP-------YYCGVGTGK 168
>MOEA_SALTY (Q56066) Molybdopterin biosynthesis protein moeA| Length = 413 Score = 29.3 bits (64), Expect = 7.8 Identities = 17/39 (43%), Positives = 24/39 (61%) Frame = +3 Query: 165 KISSNIHRRGKAILRQAIHETSKTRLELTAAELPVFSSV 281 + NI RRG+ I + A+ + TR LT AELPV +S+ Sbjct: 133 RCGQNIRRRGEDIRQDAVVFPAGTR--LTTAELPVLASL 169
>RPOB_CARHZ (Q3A9Q7) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1132 Score = 29.3 bits (64), Expect = 7.8 Identities = 30/93 (32%), Positives = 41/93 (44%) Frame = +3 Query: 144 SPHNKFSKISSNIHRRGKAILRQAIHETSKTRLELTAAELPVFSSVSGFLAYLDHDELRR 323 SP KF N R G IL E SK + + VFS + + +L+HD+ R Sbjct: 517 SPEGKFLDEMVNA-RHGSEILHV---EPSKVDF-VDVSPKQVFSVATSLIPFLEHDDANR 571 Query: 324 ELEYLGGYGQRSLVPISCRLEAHLAILGARREA 422 L +G QR VP+ R EA + G +A Sbjct: 572 AL--MGANMQRQAVPL-IRTEAPVVGTGIEYKA 601
>REX_THEAQ (Q9X2V5) Redox-sensing transcriptional repressor rex| Length = 211 Score = 29.3 bits (64), Expect = 7.8 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 3/76 (3%) Frame = +3 Query: 210 QAIHETSKTRLELTAAELPVFSSVSGFLAYLDHDELRRELEYLGGYGQRSL---VPISCR 380 Q +H TS +L G LA + ++R++L Y G YG R + VP+ R Sbjct: 24 QGVHRTSSEQL--------------GELAQVTAFQVRKDLSYFGSYGTRGVGYTVPVLKR 69 Query: 381 LEAHLAILGARREANL 428 H ILG R+ L Sbjct: 70 ELRH--ILGLNRKWGL 83
>GLNA_FUSSH (Q9UUN6) Glutamine synthetase (EC 6.3.1.2) (Glutamate--ammonia| ligase) (GS) Length = 356 Score = 29.3 bits (64), Expect = 7.8 Identities = 13/33 (39%), Positives = 18/33 (54%) Frame = -1 Query: 231 SRSRGWPA*GWPSPDGECCLKF*RIYCGVKSSR 133 +R GWP G+P+P GE YCGV + + Sbjct: 143 NRPYGWPTGGFPAPQGE-------YYCGVGTGK 168 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,446,615 Number of Sequences: 219361 Number of extensions: 1359623 Number of successful extensions: 4223 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 4112 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4221 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4488201198 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
