ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd15i20 |
|---|---|
| Clone Library Name | barley_pub |
>TULP1_MOUSE (Q9Z273) Tubby-related protein 1 (Tubby-like protein 1)| Length = 543 Score = 33.5 bits (75), Expect = 0.56 Identities = 20/70 (28%), Positives = 34/70 (48%) Frame = -2 Query: 611 RLRAQPSAGVRLESAKPKTQDGLESNGRLEAAKRRLQERYQEAENAKKQRTIQVMELGDI 432 R + +P+ G +L KP+T D LES R A RR E + ++ + R Q + + Sbjct: 30 RPKQRPAQGQKLRKKKPETPDSLESKPRKAGAGRRKHE--EPPADSAEPRAAQTVYAKFL 87 Query: 431 PKPKSHTKQP 402 P++ + P Sbjct: 88 RDPEAKKRDP 97
>MK07_MOUSE (Q9WVS8) Mitogen-activated protein kinase 7 (EC 2.7.11.24)| (Extracellular signal-regulated kinase 5) (ERK-5) (BMK1 kinase) Length = 806 Score = 31.6 bits (70), Expect = 2.1 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 1/80 (1%) Frame = -2 Query: 617 KSRLRAQPSAGVRL-ESAKPKTQDGLESNGRLEAAKRRLQERYQEAENAKKQRTIQVMEL 441 +SRLR PSA + E KP T E E +RR QER +E E +++R + Sbjct: 488 RSRLRDGPSAPLEAPEPRKPVTAQ--ERQREREEKRRRRQERAKEREKRRQERERKERGA 545 Query: 440 GDIPKPKSHTKQPMAKSRNN 381 G + P + + S N+ Sbjct: 546 GTLGGPSTDPLAGLVLSDND 565
>MYG_LOXAF (P02187) Myoglobin| Length = 153 Score = 30.8 bits (68), Expect = 3.6 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 3/95 (3%) Frame = -2 Query: 584 VRLESAKPKTQDGLESNGRLEAAKRRLQERYQEAENAKKQRTIQVMELGDIPKPKSHTK- 408 VRL + P+T + + L+ + + +E+ KKQ + LG I K K H + Sbjct: 30 VRLFTGHPETLEKFDKFKHLKT-----EGEMKASEDLKKQGVTVLTALGGILKKKGHHEA 84 Query: 407 --QPMAKSRNNIRSRVLGRR*FLCDVFLHLMNCCH 309 QP+A+S + F+ D +H++ H Sbjct: 85 EIQPLAQSHATKHKIPIKYLEFISDAIIHVLQSKH 119
>MYG_ELEMA (P02186) Myoglobin| Length = 153 Score = 30.8 bits (68), Expect = 3.6 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 3/95 (3%) Frame = -2 Query: 584 VRLESAKPKTQDGLESNGRLEAAKRRLQERYQEAENAKKQRTIQVMELGDIPKPKSHTK- 408 VRL + P+T + + L+ + + +E+ KKQ + LG I K K H + Sbjct: 30 VRLFTGHPETLEKFDKFKHLKT-----EGEMKASEDLKKQGVTVLTALGGILKKKGHHEA 84 Query: 407 --QPMAKSRNNIRSRVLGRR*FLCDVFLHLMNCCH 309 QP+A+S + F+ D +H++ H Sbjct: 85 EIQPLAQSHATKHKIPIKYLEFISDAIIHVLQSKH 119
>MK07_HUMAN (Q13164) Mitogen-activated protein kinase 7 (EC 2.7.11.24)| (Extracellular signal-regulated kinase 5) (ERK-5) (ERK4) (BMK1 kinase) Length = 815 Score = 30.0 bits (66), Expect = 6.2 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Frame = -2 Query: 617 KSRLRAQPSAGVRL-ESAKPKTQDGLESNGRLEAAKRRLQERYQEAENAKKQR 462 +SRLR PSA + E KP T E E +RR QER +E E +++R Sbjct: 487 RSRLRDGPSAPLEAPEPRKPVTAQ--ERQREREEKRRRRQERAKEREKRRQER 537
>MPCP_HUMAN (Q00325) Phosphate carrier protein, mitochondrial precursor (PTP)| (Solute carrier family 25 member 3) Length = 362 Score = 30.0 bits (66), Expect = 6.2 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 2/74 (2%) Frame = -2 Query: 617 KSRLRAQPSAGVRLESAKPKT--QDGLESNGRLEAAKRRLQERYQEAENAKKQRTIQVME 444 K R++ QP L A PK ++GL++ + A Q Y + A +RT++ + Sbjct: 187 KVRIQTQPGYANTLRDAAPKMYKEEGLKAFYKGVAPLWMRQIPYTMMKFACFERTVEALY 246 Query: 443 LGDIPKPKSHTKQP 402 +PKP+S +P Sbjct: 247 KFVVPKPRSECSKP 260
>MPCP_BOVIN (P12234) Phosphate carrier protein, mitochondrial precursor (PTP)| (Solute carrier family 25 member 3) Length = 362 Score = 30.0 bits (66), Expect = 6.2 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 2/74 (2%) Frame = -2 Query: 617 KSRLRAQPSAGVRLESAKPKT--QDGLESNGRLEAAKRRLQERYQEAENAKKQRTIQVME 444 K R++ QP L A PK ++GL++ + A Q Y + A +RT++ + Sbjct: 187 KVRIQTQPGYANTLRDAAPKMYKEEGLKAFYKGVAPLWMRQIPYTMMKFACFERTVEALY 246 Query: 443 LGDIPKPKSHTKQP 402 +PKP+S +P Sbjct: 247 KFVVPKPRSECSKP 260
>VG48_HAEIN (P44241) Mu-like prophage FluMu protein gp48| Length = 168 Score = 30.0 bits (66), Expect = 6.2 Identities = 14/41 (34%), Positives = 20/41 (48%) Frame = +3 Query: 522 FQPSVAFQAILGLRLCRF*PDSC*RLCTEP*FIHMTHWQVF 644 F +A QA +R+ P C R CT P + HW++F Sbjct: 74 FLEEIATQAGFKVRVVNHYPHHCLRDCTYPLYEQANHWRIF 114
>BRD4_HUMAN (O60885) Bromodomain-containing protein 4 (HUNK1 protein)| Length = 1362 Score = 29.6 bits (65), Expect = 8.1 Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 4/93 (4%) Frame = -2 Query: 620 DKSRLRAQPSAGVRLESAKPKTQDGLESNGRL-EAAKRRLQERYQEAENAKKQRTIQVME 444 +K RLR + R+ S + +D LE R E A+RR +++ Q+ + ++Q+ Q Sbjct: 1251 EKERLRQE-----RMRSRED--EDALEQARRAHEEARRRQEQQQQQRQEQQQQQQQQAAA 1303 Query: 443 LGDIPKPKSHTKQPMA---KSRNNIRSRVLGRR 354 + P++ + QP + + R R R RR Sbjct: 1304 VAAAATPQAQSSQPQSMLDQQRELARKREQERR 1336
>HSP12_MEDSA (P27880) 18.2 kDa class I heat shock protein| Length = 158 Score = 29.6 bits (65), Expect = 8.1 Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 13/95 (13%) Frame = -2 Query: 635 PMGHVDKSRLRAQPSAGVRLESAKPKT-----------QDGLESNGRLEAAKRRLQERYQ 489 P HV K+ L V++E + +D + RLE + + R++ Sbjct: 59 PEAHVFKADLPGMKKEEVKVEIEDDRVLQISGERSVEKEDKNDQWHRLERSSGKFMRRFR 118 Query: 488 EAENAKKQRTIQVMELG--DIPKPKSHTKQPMAKS 390 ENAK + ME G + PK K+P K+ Sbjct: 119 LPENAKMDQVKAAMENGVLTVTVPKEEVKKPEVKT 153
>GELS_PIG (P20305) Gelsolin precursor (Actin-depolymerizing factor) (ADF)| (Brevin) (Fragment) Length = 772 Score = 29.6 bits (65), Expect = 8.1 Identities = 15/51 (29%), Positives = 27/51 (52%) Frame = -2 Query: 626 HVDKSRLRAQPSAGVRLESAKPKTQDGLESNGRLEAAKRRLQERYQEAENA 474 HV S A+P+ +++ KP +G E + +AA R+L + Y+ + A Sbjct: 247 HVHVSEEDAEPAGMLQVLGPKPTLPEGTEDTVKEDAANRKLAKLYKVSNGA 297 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 94,796,588 Number of Sequences: 219361 Number of extensions: 2006577 Number of successful extensions: 5484 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 5288 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5480 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6143359464 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
