ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd15i08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DHE4_NEUIN (Q9HGU4) NADP-specific glutamate dehydrogenase (EC 1.... 29 3.8
2DHE4_NEUCR (P00369) NADP-specific glutamate dehydrogenase (EC 1.... 29 3.8
3IDI2_STRR6 (Q8DR48) Isopentenyl-diphosphate delta-isomerase (EC ... 29 5.0
4IDI2_STRPN (Q97SH8) Isopentenyl-diphosphate delta-isomerase (EC ... 29 5.0
5DNAK3_SYNY3 (P73098) Chaperone protein dnaK3 (Heat shock protein... 28 8.6
6KP58_DROME (Q9VPC0) Serine/threonine-protein kinase PITSLRE (EC ... 28 8.6

>DHE4_NEUIN (Q9HGU4) NADP-specific glutamate dehydrogenase (EC 1.4.1.4)|
           (NADP-GDH) (NADP-dependent glutamate dehydrogenase)
          Length = 453

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
 Frame = +1

Query: 22  TVIVLSGTDGIIVATSDTTVPLIELRH*SHMLIVKGSGGRWVSAAPCGHLPW----RPW 186
           TV+ LS + G +VAT ++ + + ++   + ++ +K +     S    GHL W    RPW
Sbjct: 243 TVVSLSDSKGALVATGESGITVEDI---NAVMAIKEARQSLTSFQHAGHLKWIEGARPW 298



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>DHE4_NEUCR (P00369) NADP-specific glutamate dehydrogenase (EC 1.4.1.4)|
           (NADP-GDH) (NADP-dependent glutamate dehydrogenase)
          Length = 453

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
 Frame = +1

Query: 22  TVIVLSGTDGIIVATSDTTVPLIELRH*SHMLIVKGSGGRWVSAAPCGHLPW----RPW 186
           TV+ LS + G +VAT ++ + + ++   + ++ +K +     S    GHL W    RPW
Sbjct: 243 TVVSLSDSKGALVATGESGITVEDI---NAVMAIKEARQSLTSFQHAGHLKWIEGARPW 298



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>IDI2_STRR6 (Q8DR48) Isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2) (IPP|
           isomerase) (Isopentenyl pyrophosphate isomerase)
          Length = 336

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 298 GASGRGPCRTSPAPMERYTSWQRVGRVTMWKKSPRVVLCS 417
           GA   G  RT    +E YT  + +G V  WK   R+++CS
Sbjct: 267 GAKAVGLSRTVLELVETYTVEEVIGIVQGWKADLRLIMCS 306



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>IDI2_STRPN (Q97SH8) Isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2) (IPP|
           isomerase) (Isopentenyl pyrophosphate isomerase)
          Length = 336

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 298 GASGRGPCRTSPAPMERYTSWQRVGRVTMWKKSPRVVLCS 417
           GA   G  RT    +E YT  + +G V  WK   R+++CS
Sbjct: 267 GAKAVGLSRTVLELVETYTVEEVIGIVQGWKADLRLIMCS 306



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>DNAK3_SYNY3 (P73098) Chaperone protein dnaK3 (Heat shock protein 70-3) (Heat|
           shock 70 kDa protein 3) (HSP70-3)
          Length = 771

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 274 RRCSPSPRGASGRGPCRTSPAPMERYTSWQRVGRVT 381
           RR +P PR  +GRGP  +       Y  W +  RVT
Sbjct: 660 RREAPMPRAGAGRGPSLSKDYRSTAYADWDQ-SRVT 694



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>KP58_DROME (Q9VPC0) Serine/threonine-protein kinase PITSLRE (EC 2.7.11.22)|
           (Cell division cycle 2-like)
          Length = 952

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +1

Query: 313 GPCRTSPAPMERYTSWQRVGRVTMWKKSPRVVLCS 417
           G  R   +P+++YTS      VT+W ++P ++LCS
Sbjct: 705 GLAREYGSPIKKYTSLV----VTLWYRAPELLLCS 735


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,441,218
Number of Sequences: 219361
Number of extensions: 906183
Number of successful extensions: 2768
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2768
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2228238148
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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