ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd15i03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RAD9B_MOUSE (Q6WBX7) Cell cycle checkpoint control protein RAD9B... 32 0.50
2RAD9B_RAT (Q499V3) Cell cycle checkpoint control protein RAD9B h... 31 0.65
3SGBE_HAEIN (P44989) Probable sugar isomerase sgbE (EC 5.1.-.-) 29 2.5
4TRYA_DROME (P04814) Trypsin alpha precursor (EC 3.4.21.4) 28 7.2
5SYY_BUCAI (P57221) Tyrosyl-tRNA synthetase (EC 6.1.1.1) (Tyrosin... 27 9.3
6DPP6_HUMAN (P42658) Dipeptidyl aminopeptidase-like protein 6 (Di... 27 9.3
7TRYDG_DROME (P42276) Trypsin delta/gamma precursor (EC 3.4.21.4) 27 9.3
8I28RA_MOUSE (Q8CGK5) Interleukin-28 receptor alpha chain precurs... 27 9.3

>RAD9B_MOUSE (Q6WBX7) Cell cycle checkpoint control protein RAD9B homolog (RAD9|
           homolog B) (mRAD9B)
          Length = 403

 Score = 31.6 bits (70), Expect = 0.50
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 259 LWLCPLREGQTRRRCLSCHVVYNYLFFSXL 170
           LWL P  +G   R   SCH  Y Y+ FS +
Sbjct: 28  LWLDPSEKGLALRSVNSCHSTYGYVLFSSM 57



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>RAD9B_RAT (Q499V3) Cell cycle checkpoint control protein RAD9B homolog (RAD9|
           homolog B)
          Length = 398

 Score = 31.2 bits (69), Expect = 0.65
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 259 LWLCPLREGQTRRRCLSCHVVYNYLFFSXL 170
           LWL P  +G   R   SCH  Y Y+ FS +
Sbjct: 23  LWLDPSEKGLALRSVNSCHSTYGYVLFSSV 52



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>SGBE_HAEIN (P44989) Probable sugar isomerase sgbE (EC 5.1.-.-)|
          Length = 231

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 21/57 (36%), Positives = 31/57 (54%)
 Frame = +1

Query: 166 LTTKKRRGNYTLHDRRGIVVLFVLLSRGKATSTNTVVAVLRASRGPAVRYNAASSAL 336
           +TTK+ +GNY L    G V++   LSRG     + + AVL  S GP      A++A+
Sbjct: 132 MTTKEIKGNYEL--ETGKVIVETFLSRG--IEPDNIPAVLVHSHGPFAWGKDANNAV 184



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>TRYA_DROME (P04814) Trypsin alpha precursor (EC 3.4.21.4)|
          Length = 256

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 270 RSSCTASVTGTSSQIQRSXLCPGAAAASSCR 362
           +S C +S  G  SQI+ + +C  A+   +C+
Sbjct: 177 QSQCASSTYGYGSQIRNTMICAAASGKDACQ 207



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>SYY_BUCAI (P57221) Tyrosyl-tRNA synthetase (EC 6.1.1.1) (Tyrosine--tRNA|
           ligase) (TyrRS)
          Length = 422

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 163 ALTTKKRRGNYTLHDRRGIVVLFVLLSRGK 252
           ++ T+K R N+  H++  +   F LLSRGK
Sbjct: 385 SINTEKIRKNHIFHEKDKLFGKFTLLSRGK 414



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>DPP6_HUMAN (P42658) Dipeptidyl aminopeptidase-like protein 6|
           (Dipeptidylpeptidase VI) (Dipeptidylpeptidase 6)
           (Dipeptidyl peptidase IV-like protein) (Dipeptidyl
           aminopeptidase-related protein) (DPPX)
          Length = 865

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 238 EGQTRRRCLSCHVVYNYLFFS 176
           EG   R+CLSC +V N  +FS
Sbjct: 520 EGNFNRQCLSCDLVENCTYFS 540



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>TRYDG_DROME (P42276) Trypsin delta/gamma precursor (EC 3.4.21.4)|
          Length = 253

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 270 RSSCTASVTGTSSQIQRSXLCPGAAAASSCR 362
           +S C +S  G  SQI+ + +C  A+   +C+
Sbjct: 177 QSQCASSTYGYGSQIRSTMICAAASGKDACQ 207



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>I28RA_MOUSE (Q8CGK5) Interleukin-28 receptor alpha chain precursor|
           (IL-28R-alpha) (IL-28RA) (Cytokine receptor family 2
           member 12) (Cytokine receptor class-II member 12)
           (CRF2-12) (Interferon lambda receptor 1) (IFN-lambda R1)
          Length = 535

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 247 PLREGQTRRRCLSCHVVYNYL 185
           PL++G +RR CLS   VY  +
Sbjct: 184 PLQQGASRRHCLSARTVYTLI 204


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,423,468
Number of Sequences: 219361
Number of extensions: 636600
Number of successful extensions: 1526
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1526
length of database: 80,573,946
effective HSP length: 97
effective length of database: 59,295,929
effective search space used: 1423102296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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