ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd15i01 |
|---|---|
| Clone Library Name | barley_pub |
>RPOC2_MAIZE (P16025) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1527 Score = 434 bits (1115), Expect = e-121 Identities = 222/224 (99%), Positives = 223/224 (99%) Frame = -3 Query: 673 GHYGEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERI 494 GHYG+ILYKGDRLVTF YEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERI Sbjct: 1254 GHYGKILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERI 1313 Query: 493 PRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSE 314 PRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSE Sbjct: 1314 PRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSE 1373 Query: 313 DGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARV 134 DGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARV Sbjct: 1374 DGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARV 1433 Query: 133 LAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRSPQDKN 2 LAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRSPQDKN Sbjct: 1434 LAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRSPQDKN 1477
>RPOC2_SACOF (Q6ENX1) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1534 Score = 434 bits (1115), Expect = e-121 Identities = 222/224 (99%), Positives = 223/224 (99%) Frame = -3 Query: 673 GHYGEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERI 494 GHYG+ILYKGDRLVTF YEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERI Sbjct: 1261 GHYGKILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERI 1320 Query: 493 PRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSE 314 PRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSE Sbjct: 1321 PRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSE 1380 Query: 313 DGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARV 134 DGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARV Sbjct: 1381 DGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARV 1440 Query: 133 LAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRSPQDKN 2 LAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRSPQDKN Sbjct: 1441 LAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRSPQDKN 1484
>RPOC2_SACHY (Q6L3A5) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1534 Score = 434 bits (1115), Expect = e-121 Identities = 222/224 (99%), Positives = 223/224 (99%) Frame = -3 Query: 673 GHYGEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERI 494 GHYG+ILYKGDRLVTF YEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERI Sbjct: 1261 GHYGKILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERI 1320 Query: 493 PRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSE 314 PRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSE Sbjct: 1321 PRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSE 1380 Query: 313 DGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARV 134 DGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARV Sbjct: 1381 DGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARV 1440 Query: 133 LAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRSPQDKN 2 LAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRSPQDKN Sbjct: 1441 LAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRSPQDKN 1484
>RPOC2_WHEAT (Q9XPS9) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1479 Score = 433 bits (1113), Expect = e-121 Identities = 222/224 (99%), Positives = 222/224 (99%) Frame = -3 Query: 673 GHYGEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERI 494 GHYGEILYKGDRLVTF YEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERI Sbjct: 1217 GHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERI 1276 Query: 493 PRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSE 314 PRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSE Sbjct: 1277 PRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSE 1336 Query: 313 DGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARV 134 DGMSNVF PGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARV Sbjct: 1337 DGMSNVFSPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARV 1396 Query: 133 LAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRSPQDKN 2 LAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRSPQDKN Sbjct: 1397 LAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRSPQDKN 1440
>RPOC2_ORYNI (Q6ENI2) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1513 Score = 425 bits (1093), Expect = e-119 Identities = 218/224 (97%), Positives = 219/224 (97%) Frame = -3 Query: 673 GHYGEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERI 494 GHYGEILYKGDRLVTF YEK+RSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERI Sbjct: 1242 GHYGEILYKGDRLVTFIYEKARSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERI 1301 Query: 493 PRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSE 314 PRILG PWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSE Sbjct: 1302 PRILGGPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSE 1361 Query: 313 DGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARV 134 DGMSNVF PGELIGLLRAERAGRALDESIYYRAILLGITR SLNTQSFISEASFQETARV Sbjct: 1362 DGMSNVFSPGELIGLLRAERAGRALDESIYYRAILLGITRVSLNTQSFISEASFQETARV 1421 Query: 133 LAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRSPQDKN 2 LAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHR PQDKN Sbjct: 1422 LAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRYPQDKN 1465
>RPOC2_ORYSA (P12093) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1513 Score = 423 bits (1088), Expect = e-118 Identities = 217/224 (96%), Positives = 219/224 (97%) Frame = -3 Query: 673 GHYGEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERI 494 GHYGEILYKGDRLVTF YEK+RSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERI Sbjct: 1242 GHYGEILYKGDRLVTFIYEKARSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERI 1301 Query: 493 PRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSE 314 PRILG PWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSE Sbjct: 1302 PRILGGPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSE 1361 Query: 313 DGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARV 134 DGMSNVF PGELIGLLRAERAGRALDESIYYRAILLGITR SLNTQSFISEASFQETARV Sbjct: 1362 DGMSNVFSPGELIGLLRAERAGRALDESIYYRAILLGITRVSLNTQSFISEASFQETARV 1421 Query: 133 LAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRSPQDKN 2 LAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHR PQ+KN Sbjct: 1422 LAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRYPQNKN 1465
>RPOC2_PHAAO (Q3BAQ2) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1388 Score = 385 bits (988), Expect = e-107 Identities = 195/224 (87%), Positives = 206/224 (91%) Frame = -3 Query: 673 GHYGEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERI 494 GHYGE Y+GD L+TF YEKSRS DITQGLPKVEQI E RSIDS+S NLERR+E W+ERI Sbjct: 1119 GHYGETFYEGDTLITFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLERRVEGWDERI 1178 Query: 493 PRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSE 314 RILG+PWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRH+EII+RQVTS+V VSE Sbjct: 1179 RRILGIPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHLEIIVRQVTSRVLVSE 1238 Query: 313 DGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARV 134 DGMSNVFLPGE IGLLRAERAGR L ESI YRAILLGIT++SLNTQSFISEASFQETARV Sbjct: 1239 DGMSNVFLPGEFIGLLRAERAGRVLAESICYRAILLGITKSSLNTQSFISEASFQETARV 1298 Query: 133 LAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRSPQDKN 2 LAKAALRGRIDWLKGLKENVVLGGIIPVGTGF K VHRS QDKN Sbjct: 1299 LAKAALRGRIDWLKGLKENVVLGGIIPVGTGFNKLVHRSKQDKN 1342
>RPOC2_EUCGG (Q49L08) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1392 Score = 382 bits (982), Expect = e-106 Identities = 194/224 (86%), Positives = 206/224 (91%) Frame = -3 Query: 673 GHYGEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERI 494 GHYGEILY+GD LVTF YEKSRS DITQGLPKVEQ+ E RSIDS+S NLE+RIE WNE I Sbjct: 1121 GHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIEGWNEHI 1180 Query: 493 PRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSE 314 +ILG+PWGFLIGAELTI QSRISLVNKIQKVYRSQGVQIHNRHIEII+RQ+TSKV VSE Sbjct: 1181 KKILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSE 1240 Query: 313 DGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARV 134 DGMSNVFLPGELIGLLRA R GRAL+ESI YRAILLGITRASLNTQSFISEASFQETARV Sbjct: 1241 DGMSNVFLPGELIGLLRAARTGRALEESICYRAILLGITRASLNTQSFISEASFQETARV 1300 Query: 133 LAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRSPQDKN 2 LAKAALRGRIDWLKGLKENVV+GG+IPVGTGF+ VHRS Q KN Sbjct: 1301 LAKAALRGRIDWLKGLKENVVIGGMIPVGTGFKGLVHRSRQHKN 1344
>RPOC2_SPIOL (P11704) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1361 Score = 380 bits (977), Expect = e-105 Identities = 193/224 (86%), Positives = 206/224 (91%) Frame = -3 Query: 673 GHYGEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERI 494 GHYGEI+Y+GD LVTF YEKSRS DITQGLPKVEQ+ E RSIDS+S NLE+RI+ WNERI Sbjct: 1105 GHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISINLEKRIDSWNERI 1164 Query: 493 PRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSE 314 RILG PWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEII+RQ+TSKV VSE Sbjct: 1165 TRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSE 1224 Query: 313 DGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARV 134 DGMSNVFLPGELIGL RAER GRAL+E+I YRA LLGITRASLNTQSFISEASFQETARV Sbjct: 1225 DGMSNVFLPGELIGLFRAERTGRALEEAICYRATLLGITRASLNTQSFISEASFQETARV 1284 Query: 133 LAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRSPQDKN 2 LAKAALRGRIDWLKGLKENVVLGG+IPVGTGF+ FVH S Q K+ Sbjct: 1285 LAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFVHHSSQHKD 1328
>RPOC2_SILLA (Q589B8) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1373 Score = 378 bits (970), Expect = e-104 Identities = 188/224 (83%), Positives = 207/224 (92%) Frame = -3 Query: 673 GHYGEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERI 494 GHYGEI+Y+GD LVTF YEKSRS DITQGLPKVEQ+ E RS++S+S NLE+RI WNERI Sbjct: 1107 GHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSVESISMNLEKRINGWNERI 1166 Query: 493 PRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSE 314 +ILG+PWGFL+GAELTIAQSRISLVNKIQKVYRSQGVQIH+RHIEII+RQ+TSKV VSE Sbjct: 1167 KKILGIPWGFLVGAELTIAQSRISLVNKIQKVYRSQGVQIHDRHIEIIVRQITSKVLVSE 1226 Query: 313 DGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARV 134 DGMSN+FLPGELIGL RAER GRAL+E+I YR ILLGITRASLNTQSFISEASFQETARV Sbjct: 1227 DGMSNIFLPGELIGLFRAERTGRALEEAICYRTILLGITRASLNTQSFISEASFQETARV 1286 Query: 133 LAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRSPQDKN 2 LAKAALRGRIDWLKGLKENVVLGG+IPVGTGF+ FVHRS Q K+ Sbjct: 1287 LAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFVHRSNQHKS 1330
>RPOC2_CALFE (Q7YJY0) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1377 Score = 376 bits (965), Expect = e-104 Identities = 191/224 (85%), Positives = 206/224 (91%) Frame = -3 Query: 673 GHYGEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERI 494 GH GEILY+GD LVTF YEKSRS DITQGLPKVEQ+ EARSIDS+S NLE+R+E WNERI Sbjct: 1115 GHCGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEARSIDSISMNLEKRVEGWNERI 1174 Query: 493 PRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSE 314 +ILG+PWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEII+RQ+TS+V VSE Sbjct: 1175 TKILGIPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSRVLVSE 1234 Query: 313 DGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARV 134 DGMSNVF PGELIGLLRAER GRAL+E+I YRAILLGITRASLNTQSFISEASFQETARV Sbjct: 1235 DGMSNVFSPGELIGLLRAERTGRALEEAICYRAILLGITRASLNTQSFISEASFQETARV 1294 Query: 133 LAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRSPQDKN 2 LAKAALRGRIDWLKGLKENVVLGG++PVGTGF+ V RS Q N Sbjct: 1295 LAKAALRGRIDWLKGLKENVVLGGMMPVGTGFKGLVRRSRQHNN 1338
>RPOC2_ACOCL (Q3V544) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1386 Score = 375 bits (963), Expect = e-104 Identities = 188/224 (83%), Positives = 204/224 (91%) Frame = -3 Query: 673 GHYGEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERI 494 GHYGEILY GD L+TF YEKSRS DITQGLPKVEQ+ E RSIDS+S NLE+R+E WNE I Sbjct: 1114 GHYGEILYGGDTLITFIYEKSRSGDITQGLPKVEQVLEVRSIDSISTNLEKRVEGWNEHI 1173 Query: 493 PRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSE 314 +ILG+PWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHN+HIEII+RQ+TSKV VSE Sbjct: 1174 TKILGIPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNKHIEIIVRQITSKVLVSE 1233 Query: 313 DGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARV 134 DGMSNVF PGELIGLLRAER GRAL+E+I YRAILLGITRASLNTQSFISEASFQETARV Sbjct: 1234 DGMSNVFSPGELIGLLRAERTGRALEEAICYRAILLGITRASLNTQSFISEASFQETARV 1293 Query: 133 LAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRSPQDKN 2 LAKAALRGR+DWLKGLKENVVLG +IPVGTGF+ VHRS + N Sbjct: 1294 LAKAALRGRVDWLKGLKENVVLGAMIPVGTGFKALVHRSRKPNN 1337
>RPOC2_CUCSA (Q4VZP3) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1394 Score = 375 bits (962), Expect = e-104 Identities = 188/223 (84%), Positives = 205/223 (91%) Frame = -3 Query: 670 HYGEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERIP 491 HYGEILY+GD LVTF YEKSRS DITQGLPKVEQ+ E RSIDS+S +LE+RIE WNERI Sbjct: 1124 HYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERIT 1183 Query: 490 RILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSED 311 RILG+PWGFLIGAELTI QSRISLVNKIQKVYRSQGV+IHNRHIEII+RQ+TSKV VSED Sbjct: 1184 RILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSED 1243 Query: 310 GMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVL 131 GMSNVF PGELIGLLRAER GRAL+E+I YRA+LLGIT+ASLNTQSFISEASFQETARVL Sbjct: 1244 GMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVL 1303 Query: 130 AKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRSPQDKN 2 AKAALRGRIDWL+GLKENVVLGG+IPVGTGF++ HRS Q N Sbjct: 1304 AKAALRGRIDWLRGLKENVVLGGMIPVGTGFRELAHRSRQHNN 1346
>RPOC2_NYMAL (Q6EW58) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1401 Score = 374 bits (961), Expect = e-103 Identities = 188/224 (83%), Positives = 205/224 (91%) Frame = -3 Query: 673 GHYGEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERI 494 G YGEI Y+GD LVTF YEKSRS DIT GLPKVEQ+ E RSIDS+S NLE+R+E WNE I Sbjct: 1117 GDYGEIFYEGDTLVTFIYEKSRSGDITHGLPKVEQVLEVRSIDSISMNLEKRVEGWNEHI 1176 Query: 493 PRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSE 314 ILG+PWGFLIGAELTIAQSR+SLVNKIQKVYRSQGVQIHN+HIEII+RQ+TSKV VSE Sbjct: 1177 TGILGIPWGFLIGAELTIAQSRVSLVNKIQKVYRSQGVQIHNKHIEIIVRQITSKVLVSE 1236 Query: 313 DGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARV 134 DGMSNVF PGELIGLLRAERAGRAL+E+I YRA+LLGITRASLNTQSFISEASFQETARV Sbjct: 1237 DGMSNVFSPGELIGLLRAERAGRALEEAICYRAVLLGITRASLNTQSFISEASFQETARV 1296 Query: 133 LAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRSPQDKN 2 LAKAALRGRIDWLKGLKENVVLGG+IPVGTGF++FVHRS + N Sbjct: 1297 LAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKRFVHRSREYNN 1340
>RPOC2_NICTO (Q33C48) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1392 Score = 373 bits (957), Expect = e-103 Identities = 189/224 (84%), Positives = 203/224 (90%) Frame = -3 Query: 673 GHYGEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERI 494 GHYGE LY+GD LVTF YEKSRS DITQGLPKVEQ+ E RSIDS+S NLE+RIE WN+ I Sbjct: 1121 GHYGETLYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIEGWNKCI 1180 Query: 493 PRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSE 314 RILG+PWGFLIGAELTIAQSRISLVNKIQ+VYRSQGVQIHNRHIEII+RQ+TSKV VSE Sbjct: 1181 TRILGIPWGFLIGAELTIAQSRISLVNKIQQVYRSQGVQIHNRHIEIIVRQITSKVLVSE 1240 Query: 313 DGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARV 134 DGMSNVF PGELIGLLRAER GRAL+E+I YR +LLGITRASLNTQSFISEASFQETARV Sbjct: 1241 DGMSNVFSPGELIGLLRAERMGRALEEAICYRVVLLGITRASLNTQSFISEASFQETARV 1300 Query: 133 LAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRSPQDKN 2 LAKAALRGRIDWLKGLKENVVLGG+IPVGTGF+ VH S Q N Sbjct: 1301 LAKAALRGRIDWLKGLKENVVLGGVIPVGTGFKGLVHPSKQHNN 1344
>RPOC2_ATRBE (Q8S8Y1) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1389 Score = 372 bits (956), Expect = e-103 Identities = 188/224 (83%), Positives = 203/224 (90%) Frame = -3 Query: 673 GHYGEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERI 494 GHYGE LY+GD LVTF YEKSRS DITQGLPKVEQ+ E RSIDS+S NLE+R+E WN+ I Sbjct: 1118 GHYGETLYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNKCI 1177 Query: 493 PRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSE 314 RILG+PWGFLIGAELTIAQSRISLVNKIQ+VYRSQGVQIHNRHIEII+RQ+TSKV VSE Sbjct: 1178 TRILGIPWGFLIGAELTIAQSRISLVNKIQQVYRSQGVQIHNRHIEIIVRQITSKVLVSE 1237 Query: 313 DGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARV 134 DGMSNVF PGELIGLLRAER GRAL+E+I YR +LLGITRASLNTQSFISEASFQETARV Sbjct: 1238 DGMSNVFSPGELIGLLRAERMGRALEEAICYRVVLLGITRASLNTQSFISEASFQETARV 1297 Query: 133 LAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRSPQDKN 2 LAKAALRGRIDWLKGLKENVVLGG+IPVGTGF+ VH S Q N Sbjct: 1298 LAKAALRGRIDWLKGLKENVVLGGVIPVGTGFKGLVHPSKQHNN 1341
>RPOC2_TOBAC (P38550) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1388 Score = 372 bits (954), Expect = e-103 Identities = 187/224 (83%), Positives = 203/224 (90%) Frame = -3 Query: 673 GHYGEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERI 494 GHYGE LY+GD LVTF YEKSRS DITQGLPKVEQ+ E RS+DS+S NLE+RIE WN+ I Sbjct: 1117 GHYGETLYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSVDSISMNLEKRIEGWNKCI 1176 Query: 493 PRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSE 314 RILG+PWGFLIGAELTIAQSRISLVNKIQ+VYRSQGVQIHNRH+EII+RQ+TSKV VSE Sbjct: 1177 TRILGIPWGFLIGAELTIAQSRISLVNKIQQVYRSQGVQIHNRHLEIIVRQITSKVLVSE 1236 Query: 313 DGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARV 134 DGMSNVF PGELIGLLRAER GRAL+E+I YR +LLGITRASLNTQSFISEASFQETARV Sbjct: 1237 DGMSNVFSPGELIGLLRAERMGRALEEAICYRVVLLGITRASLNTQSFISEASFQETARV 1296 Query: 133 LAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRSPQDKN 2 LAKAALRGRIDWLKGLKENVVLGG+IPVGTGF+ VH S Q N Sbjct: 1297 LAKAALRGRIDWLKGLKENVVLGGVIPVGTGFKGLVHPSKQHNN 1340
>RPOC2_NICSY (Q3C1G9) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1392 Score = 372 bits (954), Expect = e-103 Identities = 187/224 (83%), Positives = 203/224 (90%) Frame = -3 Query: 673 GHYGEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERI 494 GHYGE LY+GD LVTF YEKSRS DITQGLPKVEQ+ E RS+DS+S NLE+RIE WN+ I Sbjct: 1121 GHYGETLYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSVDSISMNLEKRIEGWNKCI 1180 Query: 493 PRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSE 314 RILG+PWGFLIGAELTIAQSRISLVNKIQ+VYRSQGVQIHNRH+EII+RQ+TSKV VSE Sbjct: 1181 TRILGIPWGFLIGAELTIAQSRISLVNKIQQVYRSQGVQIHNRHLEIIVRQITSKVLVSE 1240 Query: 313 DGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARV 134 DGMSNVF PGELIGLLRAER GRAL+E+I YR +LLGITRASLNTQSFISEASFQETARV Sbjct: 1241 DGMSNVFSPGELIGLLRAERMGRALEEAICYRVVLLGITRASLNTQSFISEASFQETARV 1300 Query: 133 LAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRSPQDKN 2 LAKAALRGRIDWLKGLKENVVLGG+IPVGTGF+ VH S Q N Sbjct: 1301 LAKAALRGRIDWLKGLKENVVLGGVIPVGTGFKGLVHPSKQHNN 1344
>RPOC2_OENHO (Q9MTM3) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1386 Score = 371 bits (952), Expect = e-102 Identities = 187/224 (83%), Positives = 202/224 (90%) Frame = -3 Query: 673 GHYGEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERI 494 GHYGEILY GD +VTF YEKSRS DITQGLPKVEQ+ E RS+DS+S NLE+R+E+WNE I Sbjct: 1116 GHYGEILYDGDTVVTFLYEKSRSGDITQGLPKVEQVLEVRSVDSISVNLEKRVENWNEHI 1175 Query: 493 PRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSE 314 RILG PWGFLIGAELTI QSRISLVNKIQKVYRSQGVQIHNRHIEII+RQ+TSKV VSE Sbjct: 1176 TRILGFPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSE 1235 Query: 313 DGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARV 134 DGMSNVFLP ELIGLLRAER GRAL+ESI Y+A LLGITR SLNTQSFISEASFQETARV Sbjct: 1236 DGMSNVFLPRELIGLLRAERTGRALEESICYKAFLLGITRTSLNTQSFISEASFQETARV 1295 Query: 133 LAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRSPQDKN 2 LAKAALRGRIDWLKGLKENVV+GG+IPVGTGF+ VH S Q K+ Sbjct: 1296 LAKAALRGRIDWLKGLKENVVIGGMIPVGTGFKGLVHCSKQHKS 1339
>RPOC2_PANGI (Q68S16) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1387 Score = 370 bits (949), Expect = e-102 Identities = 188/224 (83%), Positives = 203/224 (90%) Frame = -3 Query: 673 GHYGEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERI 494 GHYGEILY+GD LVTF YEKSRS DITQGLPKVEQ+ E RSIDS+S NLE+R+E WNE I Sbjct: 1116 GHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNECI 1175 Query: 493 PRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSE 314 R LG+PWGFLIGAELTI QSRISLVNKIQKVYRSQGVQIHNRHIEII+RQ+TSKV VSE Sbjct: 1176 TRNLGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSE 1235 Query: 313 DGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARV 134 DGMSNVFLPGE IGLLRAER GRAL+E+I Y+A+LLGIT+ASLNTQSFISEASFQETARV Sbjct: 1236 DGMSNVFLPGEFIGLLRAERMGRALEEAICYQAVLLGITKASLNTQSFISEASFQETARV 1295 Query: 133 LAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRSPQDKN 2 LAKAALRGRIDWLKGLKENVVLGG+IPVGTGF+ V S Q KN Sbjct: 1296 LAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGLVPPSRQHKN 1339
>RPOC2_ARATH (P56764) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1376 Score = 368 bits (945), Expect = e-102 Identities = 189/225 (84%), Positives = 203/225 (90%), Gaps = 1/225 (0%) Frame = -3 Query: 673 GHYGEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERI 494 GHY EILY+GD LVTF YEKSRS DITQGLPKVEQ+ E RSIDS+S NLE+RI+ WN+ I Sbjct: 1112 GHYSEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISLNLEKRIKGWNKCI 1171 Query: 493 PRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSE 314 RILG+PWGFLIGAELTI QSRISLVNKIQKVYRSQGVQIHNRHIEII+RQ+TSKV VSE Sbjct: 1172 TRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSE 1231 Query: 313 DGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARV 134 +GMSNVFLPGELIGLLRAER GRAL+E+I YRA+LLGITRASLNTQSFISEASFQETARV Sbjct: 1232 EGMSNVFLPGELIGLLRAERTGRALEEAICYRAVLLGITRASLNTQSFISEASFQETARV 1291 Query: 133 LAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQK-FVHRSPQDKN 2 LAKAALRGRIDWLKGLKENVVLGG+IP GTGF K VH S Q N Sbjct: 1292 LAKAALRGRIDWLKGLKENVVLGGVIPAGTGFNKGLVHCSRQHTN 1336
>RPOC2_PEA (P12227) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) (Fragment) Length = 1163 Score = 367 bits (943), Expect = e-101 Identities = 184/219 (84%), Positives = 203/219 (92%) Frame = -3 Query: 673 GHYGEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERI 494 GHYGEIL +GD LVTF YEKSRS DITQGLPKVEQI E RSIDS+S NLE+RI+ WNE I Sbjct: 906 GHYGEILSQGDILVTFIYEKSRSGDITQGLPKVEQILEIRSIDSISMNLEKRIDAWNECI 965 Query: 493 PRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSE 314 +I+G+PWGFLIGAELTIAQSRISLVNKIQKVYRSQGV IHNRHIEII+RQ+TSKV VSE Sbjct: 966 TKIIGIPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSE 1025 Query: 313 DGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARV 134 DGMSN+FLPGELIGLLRAER GRAL+E+I YRA+LLG+T+ SLNTQSFISEASFQETARV Sbjct: 1026 DGMSNIFLPGELIGLLRAERTGRALEEAICYRALLLGVTKTSLNTQSFISEASFQETARV 1085 Query: 133 LAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRS 17 LAKAALRGRIDWLKGLKENVVLGG+IPVGTGF++ +HRS Sbjct: 1086 LAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKRIMHRS 1124
>RPOC2_SOLTU (Q2VEI6) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1392 Score = 367 bits (942), Expect = e-101 Identities = 185/224 (82%), Positives = 202/224 (90%) Frame = -3 Query: 673 GHYGEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERI 494 GHYGE L +G+ LVTF YEKS S DITQGLPKVEQ+ E RSIDS+S NLE+R+E WN+ I Sbjct: 1121 GHYGETLNQGNTLVTFIYEKSISDDITQGLPKVEQVLEVRSIDSISMNLEKRVESWNKCI 1180 Query: 493 PRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSE 314 PRILG+PWGFLIGAELTIAQSRISLVNKIQ+VYRSQGVQIHNRHIEII+RQ+TSKV +SE Sbjct: 1181 PRILGIPWGFLIGAELTIAQSRISLVNKIQQVYRSQGVQIHNRHIEIIVRQITSKVLISE 1240 Query: 313 DGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARV 134 DGMSNVF PGELIGLLRAER GRAL+E+I YR +LLGITRASLNTQSFISEASFQETARV Sbjct: 1241 DGMSNVFSPGELIGLLRAERMGRALEEAICYRVVLLGITRASLNTQSFISEASFQETARV 1300 Query: 133 LAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRSPQDKN 2 LAKAALRGRIDWLKGLKENVVLGG+IPVGTGF+ VH S Q N Sbjct: 1301 LAKAALRGRIDWLKGLKENVVLGGVIPVGTGFKGLVHPSKQHNN 1344
>RPOC2_SOYBN (Q8HVY3) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1386 Score = 366 bits (939), Expect = e-101 Identities = 183/221 (82%), Positives = 204/221 (92%) Frame = -3 Query: 673 GHYGEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERI 494 GHYGEIL +GD LVTF YEKSRS DITQGLPKVEQ+ E RSIDS+S NLE+R++ WN RI Sbjct: 1119 GHYGEILSEGDILVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVDTWNGRI 1178 Query: 493 PRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSE 314 +ILG+PWGFLIGAELTIAQSRISLVNKIQKVYRSQGV IHNRHIEII+RQ+TSKV VSE Sbjct: 1179 TKILGIPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSE 1238 Query: 313 DGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARV 134 DGMSNVFLPGELIGLLRAERAGR+L+E+I YR +LLGIT+ SLNTQSFISEASFQETARV Sbjct: 1239 DGMSNVFLPGELIGLLRAERAGRSLEEAICYRVLLLGITKTSLNTQSFISEASFQETARV 1298 Query: 133 LAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRSPQ 11 L+KAALRGRIDWLKGLKENVVLGG+IPVGTGF++ ++RS Q Sbjct: 1299 LSKAALRGRIDWLKGLKENVVLGGMIPVGTGFKRIMNRSKQ 1339
>RPOC2_LOTJA (Q9BBS7) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1332 Score = 361 bits (926), Expect = 1e-99 Identities = 183/219 (83%), Positives = 199/219 (90%) Frame = -3 Query: 673 GHYGEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERI 494 GHYGE+LY+GD LVTF YEKSRS DITQGLPKVEQ+ E RSIDS+S NLE+RI+ WNERI Sbjct: 1094 GHYGEMLYEGDILVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIDAWNERI 1153 Query: 493 PRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSE 314 ILG+PW FLIGAELTIAQSRISLVNKIQ+VYRSQGV IHNRHIEII+RQ+TSKV VSE Sbjct: 1154 TGILGIPWRFLIGAELTIAQSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSE 1213 Query: 313 DGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARV 134 DGMSNVF PGELIGLLRA+R GRAL+ESI YR +LLGIT+ SLNTQSFISEASFQETARV Sbjct: 1214 DGMSNVFSPGELIGLLRAQRTGRALEESICYRTLLLGITKTSLNTQSFISEASFQETARV 1273 Query: 133 LAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRS 17 LAKAALRGRIDWLKGLKEN+VLGGIIPVGTGF+K RS Sbjct: 1274 LAKAALRGRIDWLKGLKENLVLGGIIPVGTGFKKIGDRS 1312
>RPOC2_AMBTC (P60289) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1373 Score = 359 bits (921), Expect = 5e-99 Identities = 182/224 (81%), Positives = 196/224 (87%) Frame = -3 Query: 673 GHYGEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERI 494 GHYGEILY+GD LVTF YEKSRS DITQGLPKVEQ+ E RSIDS+S NLE+R+E WNERI Sbjct: 1110 GHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERI 1169 Query: 493 PRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSE 314 LG+PW F I A+LTI QSRISLVNKIQKVYRSQGVQIHNRHIE I+RQ+TSKV VSE Sbjct: 1170 TGFLGIPWEFFISAQLTIVQSRISLVNKIQKVYRSQGVQIHNRHIETIVRQITSKVLVSE 1229 Query: 313 DGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARV 134 DGMSNVF P ELIGLLRAER GRAL++ I YRAILLGITRASLNTQSFISEASFQET RV Sbjct: 1230 DGMSNVFSPRELIGLLRAERIGRALEDDICYRAILLGITRASLNTQSFISEASFQETTRV 1289 Query: 133 LAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRSPQDKN 2 LAKAALR RIDWLKGLKENVVLGG+IPVGTGF+ FVH S + N Sbjct: 1290 LAKAALRSRIDWLKGLKENVVLGGMIPVGTGFKGFVHHSREHNN 1333
>RPOC2_LACSA (Q56P11) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1381 Score = 356 bits (913), Expect = 4e-98 Identities = 179/213 (84%), Positives = 196/213 (92%) Frame = -3 Query: 673 GHYGEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERI 494 GHYGEILY+GD LVTF YEKSRS DITQGLPKVEQ+ E RSIDS+S NLE+RIE WN+ I Sbjct: 1114 GHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIEGWNKSI 1173 Query: 493 PRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSE 314 RILG+PW FLIGAELTI QSRISLVNK+QKVYRSQGVQIHNRHIEII+RQ+TSKV VSE Sbjct: 1174 TRILGIPWAFLIGAELTIVQSRISLVNKVQKVYRSQGVQIHNRHIEIIVRQITSKVLVSE 1233 Query: 313 DGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARV 134 D MSNVF PGELIGLLRAER GRAL+E+I Y+A+LLGITRAS+NTQSFISEASFQETARV Sbjct: 1234 DEMSNVFSPGELIGLLRAERMGRALEEAICYQAVLLGITRASMNTQSFISEASFQETARV 1293 Query: 133 LAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQ 35 LAKAAL GRIDWLKGLKENVVLGG+IPVG+GF+ Sbjct: 1294 LAKAALLGRIDWLKGLKENVVLGGMIPVGSGFK 1326
>RPOC2_SINAL (Q9THV5) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1384 Score = 355 bits (912), Expect = 5e-98 Identities = 180/214 (84%), Positives = 196/214 (91%) Frame = -3 Query: 673 GHYGEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERI 494 GHY EILY+GD LVTF YEKSRS DITQGLPKVEQ+ E RSIDS+S NLE+RI+ WN I Sbjct: 1120 GHYREILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISLNLEKRIKGWNRCI 1179 Query: 493 PRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSE 314 RILG+PWGFLIGAELTI QSRISLVNKI++VYRSQGVQIHNRHIEII+RQ+TSKV VSE Sbjct: 1180 TRILGIPWGFLIGAELTIVQSRISLVNKIKQVYRSQGVQIHNRHIEIIVRQITSKVLVSE 1239 Query: 313 DGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARV 134 +GMSNVFLPGELIGLLRAER GRAL+E+I YRA+LLGITRASLNTQSFISEASFQETARV Sbjct: 1240 EGMSNVFLPGELIGLLRAERTGRALEEAICYRAVLLGITRASLNTQSFISEASFQETARV 1299 Query: 133 LAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQK 32 LAKAALRGRIDWLKGLKENVVLGG+IP G G Q+ Sbjct: 1300 LAKAALRGRIDWLKGLKENVVLGGVIPPGPGSQR 1333
>RPOC2_PINKO (Q85X62) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1209 Score = 295 bits (755), Expect = 9e-80 Identities = 151/219 (68%), Positives = 181/219 (82%) Frame = -3 Query: 673 GHYGEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERI 494 GHYGEIL KGD L+T YE+ +SSDI QGLPKVEQ+ EAR +S+S NL+ E+W + Sbjct: 943 GHYGEILDKGDTLITLIYERLKSSDIIQGLPKVEQLSEARLNNSISMNLKESFENWTGDM 1002 Query: 493 PRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSE 314 R LG WG I A +T+ QS+I LVN+IQKVYRSQGV+I ++HIEII+RQ+TSKV +SE Sbjct: 1003 TRFLGSLWGLFISARITMEQSQIHLVNQIQKVYRSQGVRIGDKHIEIIVRQMTSKVLISE 1062 Query: 313 DGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARV 134 DG +NVF PGELIGL RA+R RAL+E+IYY+ +LLGITRASLNTQSFISEASFQETARV Sbjct: 1063 DGTANVFSPGELIGLSRAQRMDRALEETIYYQTMLLGITRASLNTQSFISEASFQETARV 1122 Query: 133 LAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRS 17 LAKAAL+GRIDWLKGLKENV+LGG+IP GTG + +HRS Sbjct: 1123 LAKAALQGRIDWLKGLKENVILGGMIPAGTG--QHIHRS 1159
>RPOC2_PINTH (P41606) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1224 Score = 287 bits (735), Expect = 2e-77 Identities = 147/218 (67%), Positives = 179/218 (82%) Frame = -3 Query: 670 HYGEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERIP 491 HYG+IL KGD L+T YE+ +SSDI QGLPKVEQ+ EAR +S+S NL+ E+W + Sbjct: 958 HYGKILDKGDTLITLIYERFKSSDIIQGLPKVEQLSEARLNNSISMNLKESFENWTGDMT 1017 Query: 490 RILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSED 311 R LG WG I A +T+ QS+I LVN+IQKVYRSQGV+I ++HIE+I+RQ+TSKV +SED Sbjct: 1018 RFLGSLWGLFISARITMEQSQIHLVNQIQKVYRSQGVRIGDKHIEVIVRQMTSKVLISED 1077 Query: 310 GMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVL 131 G +NVF PGELI L RA+R RAL+E+IYY+ +LLGITRASLNTQSFISEASFQETARVL Sbjct: 1078 GTANVFSPGELIVLSRAQRMDRALEEAIYYQTMLLGITRASLNTQSFISEASFQETARVL 1137 Query: 130 AKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRS 17 AKAAL+GRIDWLKGLKENV+LGG+IP GTG + +HRS Sbjct: 1138 AKAALQGRIDWLKGLKENVILGGMIPAGTG--QHIHRS 1173
>RPOC2_MARPO (P06274) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1386 Score = 278 bits (711), Expect = 1e-74 Identities = 136/222 (61%), Positives = 177/222 (79%) Frame = -3 Query: 670 HYGEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERIP 491 +YGE + +GD L+T YE+ +S DI QGLPKVEQ+ EAR I+S+S NLE EDWN + Sbjct: 1111 NYGEFIKEGDTLITLIYERLKSGDIIQGLPKVEQLLEARPINSVSINLENGFEDWNNDMI 1170 Query: 490 RILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSED 311 + +G WGF + ++++ Q +I+LV++IQKVY+SQGVQI N+HIEII+RQ+TSKV ED Sbjct: 1171 KFIGNLWGFFLSTKISMEQGQINLVDQIQKVYQSQGVQISNKHIEIIVRQMTSKVITLED 1230 Query: 310 GMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVL 131 GM+NVFLPGELI R ++ RAL+E++ Y+ ILLGIT+ASLNTQSFISEASFQET RVL Sbjct: 1231 GMTNVFLPGELIEFSRTQKMNRALEEAVPYKPILLGITKASLNTQSFISEASFQETTRVL 1290 Query: 130 AKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRSPQDK 5 AKAAL+GRIDWLKGLKENV+LGG++P GTG Q+ + + +K Sbjct: 1291 AKAALKGRIDWLKGLKENVILGGLVPAGTGSQEVIWQITLEK 1332
>RPOC2_ANTFO (Q85C71) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1445 Score = 276 bits (707), Expect = 3e-74 Identities = 139/215 (64%), Positives = 172/215 (80%) Frame = -3 Query: 670 HYGEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERIP 491 HYG+I+ KGD L+T YE+ +S DI QGLPKVEQ+ EAR I+S S NLE E+WN + Sbjct: 1168 HYGQIIKKGDVLITLVYERLKSGDIIQGLPKVEQLLEARPINSTSINLENGFENWNRDMT 1227 Query: 490 RILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSED 311 + LG WGFL+ A+ T+ QS+I+LV++IQ+VY+SQGV I ++HIEI++RQ+TSKV ED Sbjct: 1228 KSLGSLWGFLLSAKTTMNQSQINLVDQIQEVYQSQGVYISDKHIEIVVRQMTSKVLTLED 1287 Query: 310 GMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVL 131 GM+N FLPGELI RA+R R L+ES+ Y+ ILLGIT+ASLNTQSFISEASFQET RVL Sbjct: 1288 GMANGFLPGELIESSRAQRMNRVLEESVLYKPILLGITKASLNTQSFISEASFQETTRVL 1347 Query: 130 AKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFV 26 AKAALRGRIDWLKGLKENV+ GG+I GTG Q+ V Sbjct: 1348 AKAALRGRIDWLKGLKENVIFGGVISAGTGCQEVV 1382
>RPOC2_PHYPA (P60290) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1330 Score = 271 bits (694), Expect = 1e-72 Identities = 136/222 (61%), Positives = 175/222 (78%) Frame = -3 Query: 670 HYGEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERIP 491 +YGEI+ +GD L+T YE+ +S DI QGLPKVEQ+ EAR + +S NLE+ +WN+ + Sbjct: 1069 NYGEIVKEGDILITLIYERLKSGDIIQGLPKVEQLLEARLTNPVSINLEKGFGEWNKDMT 1128 Query: 490 RILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSED 311 G WG+ + A++++ QS+++LVN+IQKVYRSQGV I ++HIEII+RQ+TSKV ED Sbjct: 1129 NFFGSLWGYFLSAQISMEQSQVNLVNQIQKVYRSQGVNISDKHIEIIVRQMTSKVFTLED 1188 Query: 310 GMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVL 131 GM+N FLPGELI RA+R RAL+E I Y+ +LLGIT+ASLNTQSFISEASFQET RVL Sbjct: 1189 GMTNGFLPGELIEFARAKRMNRALEEVIPYKPVLLGITKASLNTQSFISEASFQETTRVL 1248 Query: 130 AKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRSPQDK 5 AKAALRGRIDWLKGLKENV+LGGIIP GTG ++ + + +K Sbjct: 1249 AKAALRGRIDWLKGLKENVILGGIIPTGTGCEEVLWQITLEK 1290
>RPOC2_CHAGL (Q8MA10) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1373 Score = 266 bits (681), Expect = 3e-71 Identities = 128/218 (58%), Positives = 171/218 (78%) Frame = -3 Query: 673 GHYGEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERI 494 G+Y +I+ GD +T YE+ ++ DI QGLPKVEQ+ EAR +++LS NL+ DWN I Sbjct: 1103 GNYKQIITSGDNFITIVYERFKTRDIIQGLPKVEQLLEARPLNNLSSNLDFGFLDWNTDI 1162 Query: 493 PRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSE 314 R+LG PWGF + + + I QS++ LVN+IQKVY+SQGVQI ++H+EII+RQ+TS+V +E Sbjct: 1163 SRLLGNPWGFFLSSLIIIRQSQLELVNQIQKVYQSQGVQISDKHLEIIVRQMTSRVLTTE 1222 Query: 313 DGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARV 134 + N FLPGEL+ L +A+R + L+ S+ Y+ ILLGITRASLNT SFISEASFQET +V Sbjct: 1223 ENGPNAFLPGELVDLFKAQRMNQILENSLAYKPILLGITRASLNTYSFISEASFQETTKV 1282 Query: 133 LAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHR 20 L KAAL+GRIDWL+GLKENV+LGGIIP GTG+QK +++ Sbjct: 1283 LTKAALQGRIDWLQGLKENVILGGIIPAGTGYQKILNK 1320
>RPOC2_PSINU (Q8WI26) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1408 Score = 263 bits (673), Expect = 3e-70 Identities = 130/223 (58%), Positives = 172/223 (77%) Frame = -3 Query: 670 HYGEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERIP 491 HYG++L +GD L+T YE+ +S DI QGLPKVEQ+ EARS++++S N+E + N I Sbjct: 1135 HYGDLLREGDTLITLTYERFKSGDIIQGLPKVEQLLEARSVNAVSRNIEDNFKKCNRVIA 1194 Query: 490 RILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSED 311 + + PW F A+++ QSR LV++IQ VY+SQGVQI ++HIEII+RQ+TSKV ED Sbjct: 1195 KFIESPWSFFFSAKISTEQSRKDLVDQIQGVYQSQGVQISDKHIEIIVRQMTSKVLTLED 1254 Query: 310 GMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVL 131 G++ VFLPGELI L RA+R RAL + IYY+ ILLGIT+ASLNT SF+SEASFQET RVL Sbjct: 1255 GIATVFLPGELIELPRAQRMNRALKQLIYYKPILLGITKASLNTTSFLSEASFQETTRVL 1314 Query: 130 AKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRSPQDKN 2 A+AA+RGRIDWLKGLKENV++GGI+P GTG ++ + +K+ Sbjct: 1315 ARAAIRGRIDWLKGLKENVIIGGIVPTGTGSREVTCQMDLEKH 1357
>RPOC2_ADICA (Q85FM9) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1420 Score = 250 bits (639), Expect = 2e-66 Identities = 122/208 (58%), Positives = 165/208 (79%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERIPRI 485 G+IL +GD L+T Y++ +S DITQGLPKVEQ+ E+RSI S+S + E W + I ++ Sbjct: 1147 GDILEEGDTLITLPYDRLKSGDITQGLPKVEQLLESRSIASISAGIGDLFEKWCQNITKL 1206 Query: 484 LGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGM 305 +G PW L+GA ++ ++ L+++I+KVY SQGV+I ++H+EII+RQ+TS+V SEDG+ Sbjct: 1207 IGNPWSHLLGAGRSMEHCQLILIDQIRKVYESQGVRICDKHLEIIVRQLTSRVVASEDGV 1266 Query: 304 SNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAK 125 +NVFLPGEL+ L +AER R L +SI+Y I+LG+TRASL+T SF++EASFQET RVLAK Sbjct: 1267 TNVFLPGELVELSQAERINRVLKKSIFYEPIVLGMTRASLSTTSFLAEASFQETTRVLAK 1326 Query: 124 AALRGRIDWLKGLKENVVLGGIIPVGTG 41 AALRGRIDWLKGLKENVV+G +PVGTG Sbjct: 1327 AALRGRIDWLKGLKENVVIGDSVPVGTG 1354
>RPOC2_MESVI (Q9MUS7) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1223 Score = 189 bits (479), Expect = 9e-48 Identities = 99/209 (47%), Positives = 138/209 (66%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERIPRI 485 G+ + GD LV +E+S++ DI QGLP++E++ EAR L P L + D + Sbjct: 972 GDFVKSGDTLVMLIFEQSKTGDIVQGLPRIEELLEARRTKGLKP-LPNNLHDLLQSFFDE 1030 Query: 484 LGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGM 305 +G A+ + + ++ LVN++Q VY++QGV I ++HIE+I+RQ+TSKV + E G Sbjct: 1031 ATEKYGIQKAAKKSFEKLQLFLVNEVQSVYKAQGVHISDKHIEVIVRQMTSKVMIEEGG- 1089 Query: 304 SNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAK 125 LPGELI L R E R + Y+ I+LGIT+ASLNT+SFIS ASFQET RVL K Sbjct: 1090 DTTLLPGELIELHRIENMNRNVSVHAKYKPIVLGITKASLNTESFISAASFQETTRVLTK 1149 Query: 124 AALRGRIDWLKGLKENVVLGGIIPVGTGF 38 AA+ G+ DWL+GLKENV++G +IP GTGF Sbjct: 1150 AAIEGKTDWLRGLKENVIIGRLIPAGTGF 1178
>RPOC2_PORPU (P51250) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1224 Score = 173 bits (438), Expect = 5e-43 Identities = 93/217 (42%), Positives = 146/217 (67%), Gaps = 7/217 (3%) Frame = -3 Query: 658 ILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERRIE-DWNERIPRIL 482 ++ KG+ L ++++++ DI QGLP++E+I EAR + N ++ +N L Sbjct: 966 LIRKGETLAVLVFDRAKTGDIIQGLPRIEEILEARKKTDVLLNPHDILDASFN------L 1019 Query: 481 GVPWGFLI--GAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDG 308 + G + A L+ + ++ LV ++Q VY+SQGV I ++HIE+I+RQ+TSKV++ E+G Sbjct: 1020 YIECGLALYEAARLSFQEIQLLLVKEVQLVYQSQGVNISDKHIEVIVRQMTSKVKI-ENG 1078 Query: 307 MSNVFLPGELIGLLRAERAGRALDE----SIYYRAILLGITRASLNTQSFISEASFQETA 140 +LPGEL+ L + E+ +++ + YR ILLGIT+ASLNT+SFIS ASFQET Sbjct: 1079 EETGYLPGELVELQKIEQTNKSMTSRNKLNASYRPILLGITQASLNTESFISAASFQETT 1138 Query: 139 RVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKF 29 +VL +AA+ G++DWL+GLKENV++G +IP GTGF + Sbjct: 1139 KVLTEAAISGKLDWLRGLKENVIIGRLIPAGTGFNMY 1175
>RPOC2_GLOVI (Q7NDF7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1262 Score = 169 bits (428), Expect = 7e-42 Identities = 104/262 (39%), Positives = 150/262 (57%), Gaps = 50/262 (19%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLER-------RIEDW 506 G+++ +GD L +E++++ DI QGLP+VE++ E R + +ER ++ D Sbjct: 963 GDLIQRGDNLALLVFERAKTGDIIQGLPRVEELLEGRKPKEMCVLVERPGKVQITQMPDE 1022 Query: 505 NERIPRIL---GVPWGFLIGAELTIAQSRIS----------------------------- 422 + ++ + GV +IG L + + Sbjct: 1023 SYQVSVVEDDGGVTNYPIIGQSLVVVDGQQVQTGESITDGPSNPHDILRIFTAREGLQKG 1082 Query: 421 -------LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLR 263 LVN++Q+VYRSQGV+IH++HIEII+RQ+TSKVRV EDG FLPGEL+ L + Sbjct: 1083 IESVQRYLVNEVQQVYRSQGVEIHDKHIEIIVRQMTSKVRV-EDGGDTTFLPGELVELRQ 1141 Query: 262 AERAGRALDESIYYRA----ILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWL 95 E+ A+ + A +LLGIT+ASLNT SFIS ASFQET RVL +AA+ G+ DWL Sbjct: 1142 IEQVNEAMAVTGGAPADCTPVLLGITKASLNTDSFISAASFQETTRVLTEAAIEGKSDWL 1201 Query: 94 KGLKENVVLGGIIPVGTGFQKF 29 +GLKENV++G +IP GTGF + Sbjct: 1202 RGLKENVIIGRLIPAGTGFNAY 1223
>RPOC2_GRATL (Q6B8R6) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1228 Score = 166 bits (420), Expect = 6e-41 Identities = 92/214 (42%), Positives = 143/214 (66%), Gaps = 7/214 (3%) Frame = -3 Query: 658 ILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEAR--SIDSLSPNLERRIEDWNERIPRI 485 ++ +G+ + T +E+ ++ DI QGLP++E+I EAR S +P++ + + + Sbjct: 970 LIQRGENIATLIFERVKTGDIVQGLPRIEEILEARKKSDSFFNPHVVL-----DSKFRQY 1024 Query: 484 LGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGM 305 + L++ ++ LV ++Q VY+SQGV+I ++HIE+I+RQ+TSKV++ E+G Sbjct: 1025 VNQGLNLYDATRLSLLILQLYLVKELQLVYQSQGVEIADKHIEVIVRQMTSKVKI-ENGG 1083 Query: 304 SNVFLPGELIGLLRAERAGRAL-----DESIYYRAILLGITRASLNTQSFISEASFQETA 140 LPGE+I L + E +AL +E++YY ILLGIT+ASLNT+SFIS ASFQET Sbjct: 1084 DTDHLPGEIIELQKIEMLNKALRLASKEEALYY-PILLGITKASLNTESFISAASFQETT 1142 Query: 139 RVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGF 38 +VL AA+ ++DWL+GLKENV++G +IP GTGF Sbjct: 1143 KVLTDAAISCKLDWLRGLKENVIIGRLIPAGTGF 1176
>RPOC2_SYNEL (Q8DL57) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1324 Score = 166 bits (419), Expect = 8e-41 Identities = 100/278 (35%), Positives = 148/278 (53%), Gaps = 58/278 (20%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARS---------------------- 551 G+++ +GD L +E++++ DI QGLP++E++ EAR Sbjct: 963 GDLVQRGDNLALLVFERAKTGDIIQGLPRIEELLEARHPKEKCVLAVRPGTCQVTYNSDD 1022 Query: 550 --------------------------IDSLSPNLERRIEDWNERIPRILGV------PWG 467 +D NL + D IL + P G Sbjct: 1023 SVEIKVIEEDGTIQEYPVLPGQNPLVVDGQKVNLADPLTDGPVDPHDILSIYFEYYKPQG 1082 Query: 466 FLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLP 287 L A+ ++ + + LVN++Q VY SQG++I ++HIE+I+RQ+TSKVR+ + G + L Sbjct: 1083 LLKAAQTSLEKVQSFLVNEVQSVYLSQGIEIADKHIEVIVRQMTSKVRIDDAG-DTILLS 1141 Query: 286 GELIGLLRAERAGRAL----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAA 119 GEL+ L +AE+A + Y +LLGIT+ASLNT SFIS ASFQET RVL +AA Sbjct: 1142 GELMTLRQAEQANEPMALTGGAPAQYTPVLLGITKASLNTDSFISAASFQETTRVLTEAA 1201 Query: 118 LRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRSPQDK 5 + G+ DWL+GLKENV++G +IP GTGF + S D+ Sbjct: 1202 IEGKSDWLRGLKENVIIGRLIPAGTGFNSYEESSNGDE 1239
>RPOC2_EUGGR (P23581) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 830 Score = 163 bits (413), Expect = 4e-40 Identities = 92/205 (44%), Positives = 131/205 (63%) Frame = -3 Query: 649 KGDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERIPRILGVPW 470 K L + + ++ DI QGLPKVE++ EAR SL + + E L + Sbjct: 627 KNQLLYRVNFVREKTYDIVQGLPKVEKLLEARMTSSLKEIINNPHDILTESFFTFLD-DY 685 Query: 469 GFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFL 290 L+ A + + L++ +Q VY+SQGV+I ++HIE+I++Q+TSKV V+ G S+ F+ Sbjct: 686 ENLVAARKSFEVIQKYLIDGVQTVYKSQGVKIADKHIELIVKQITSKVIVTNPGDSS-FM 744 Query: 289 PGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRG 110 G+ + L E + L SI Y I++G+TR SL++QSFI++ASFQET RVL KAAL+G Sbjct: 745 VGDFLDLNLVEVLNKRLVNSIVYEPIIMGLTRFSLSSQSFIAQASFQETTRVLTKAALQG 804 Query: 109 RIDWLKGLKENVVLGGIIPVGTGFQ 35 R DWL GLKEN+VLG IIP GTGF+ Sbjct: 805 RADWLSGLKENLVLGNIIPAGTGFK 829
>RPOC2_PROMA (Q7VA30) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1367 Score = 161 bits (408), Expect = 1e-39 Identities = 103/273 (37%), Positives = 147/273 (53%), Gaps = 60/273 (21%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERR----------- 518 G+++ +GD L +E+ ++ DI QGLP++E++ EAR + +RR Sbjct: 989 GDLVQRGDGLALLVFERQKTGDIVQGLPRIEELLEARRPRDSAILCKRRGIVEINQGDDD 1048 Query: 517 ---------IEDWNERIPRILG----------VPWGFLI--------------------- 458 +D E P +LG V G L+ Sbjct: 1049 DSVVVKVIESDDLIEEYPILLGKNVMISDGQEVKAGELLTDGPVNPHELLECFFGDLRDR 1108 Query: 457 -----GAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVF 293 A+ IA+ + LV ++Q VY+SQGV I ++HIE+I+RQ+TSKVR+ ED Sbjct: 1109 KPLMEAAQEAIAKLQHRLVTEVQNVYKSQGVAIDDKHIEVIVRQMTSKVRI-EDAGDTTL 1167 Query: 292 LPGELIGLLRAERAGRALDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAK 125 LPGELI + + E +A+ + + +LLGIT+ASLNT SFIS ASFQET RVL + Sbjct: 1168 LPGELIEIRQVEDTNQAISITGGAPAEFTPVLLGITKASLNTDSFISAASFQETTRVLTE 1227 Query: 124 AALRGRIDWLKGLKENVVLGGIIPVGTGFQKFV 26 AA+ G+ DWL+GLKENV++G +IP GTGF FV Sbjct: 1228 AAIEGKSDWLRGLKENVIIGRLIPAGTGFSGFV 1260
>RPOC2_GUITH (O78483) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1286 Score = 156 bits (395), Expect = 5e-38 Identities = 101/279 (36%), Positives = 146/279 (52%), Gaps = 59/279 (21%) Frame = -3 Query: 661 EILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEAR-------------SIDSLSPNLER 521 E++ + D L +E+S++ DI QGLP++E+I EAR I++ + N E Sbjct: 958 ELVQRNDTLAILVFERSKTGDIVQGLPRIEEILEARKPKEPCKLSQKPGKINTTNSNDET 1017 Query: 520 RI--------------------------------EDWNERIP---RILGVPWGFLIGAEL 446 + E + P +L + + F Sbjct: 1018 EVIQLIDTDGYTTDYIINNNQKLIISNGENVLLAEPLTDGAPNPHEMLNLYFNFYTSIIT 1077 Query: 445 TIAQSRISL-------VNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLP 287 +++SL V+++QKVY+SQ V I ++HIE+I+RQ+TSKV+V EDG LP Sbjct: 1078 LYESAKLSLQKVQTYLVDEVQKVYQSQNVDISDKHIEVIVRQMTSKVKV-EDGGDTTLLP 1136 Query: 286 GELIGLLRAERAGRAL----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAA 119 GEL+ L + E A+ Y ILLGIT+ASLNT SFIS ASFQET RVL +AA Sbjct: 1137 GELVELQQIENINEAMMLTKGVPATYCPILLGITKASLNTDSFISAASFQETTRVLTEAA 1196 Query: 118 LRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRSPQDKN 2 + G+ DWL+GLKENV++G +IP GTGF + + K+ Sbjct: 1197 IEGKADWLRGLKENVIIGRLIPAGTGFNAYNEQHKSSKS 1235
>RPOC2_PROMP (Q7V008) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1366 Score = 153 bits (386), Expect = 5e-37 Identities = 101/274 (36%), Positives = 148/274 (54%), Gaps = 61/274 (22%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPK---------------------VEQIFEARSI 548 G+++ +GD L +E+ ++ DI QGLP+ V QI E Sbjct: 989 GDLVLRGDGLALLVFERQKTGDIVQGLPRIEELLEARRPRDSSILCKKSGVVQIKEGTDE 1048 Query: 547 DSLSPNLERRIEDWNERIPRILG----------VPWGFLI-------------------- 458 +S+S ++ R + +E ++G V G L+ Sbjct: 1049 ESVSLSVIERDDSISE-YQLLMGQNIMVSDGQQVTGGELLTDGPINPHDLLDCLFTDLKD 1107 Query: 457 ------GAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNV 296 A+ +I++ + +VN++Q VY+SQGV I ++HIE+I+RQ+TSKVR+ ED Sbjct: 1108 QKPLMEAAQESISKLQRKMVNEVQNVYKSQGVAISDKHIEVIVRQMTSKVRI-EDAGDTT 1166 Query: 295 FLPGELIGLLRAERAGRALDES----IYYRAILLGITRASLNTQSFISEASFQETARVLA 128 LPGELI L + E +A+ + + +LLGIT+ASLNT SFIS ASFQET RVL Sbjct: 1167 LLPGELIELRQVEDTNQAMSITGGAPAEFTPVLLGITKASLNTDSFISAASFQETTRVLT 1226 Query: 127 KAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFV 26 +AA+ G+ DWL+GLKENV++G +IP GTGF FV Sbjct: 1227 EAAIEGKSDWLRGLKENVIIGRLIPAGTGFSGFV 1260
>RPOC2_ANASP (P22705) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1355 Score = 152 bits (384), Expect = 9e-37 Identities = 97/271 (35%), Positives = 144/271 (53%), Gaps = 59/271 (21%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERRIE------DWN 503 G+++ +GD LV +E++++ DI QGLP++E++ EAR +R E D + Sbjct: 990 GDLVQRGDNLVLLVFERAKTGDIIQGLPRIEELLEARKPKEACILAKRGGEVKVVYGDGD 1049 Query: 502 ERIP------------------RILGVPWG-----------------------FLIGAEL 446 E I + L +P G F +G+E Sbjct: 1050 EAIAIKVIESNGVVTDYPLGPGQNLAMPDGSVVPAGQPLSDGPSNPHEILEVFFSLGSED 1109 Query: 445 TIAQSRISLVNKIQ--------KVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFL 290 + + K+Q VY+SQG+ I ++HIE+I+RQ+T+KVR+ +DG L Sbjct: 1110 GVYACASHALQKVQTFLVNEVQMVYQSQGIDIADKHIEVIVRQMTNKVRI-DDGGDTTML 1168 Query: 289 PGELIGLLRAERAGRAL----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKA 122 PGEL+ L + E+ A+ Y +LLGIT+ASLNT SFIS ASFQET RVL +A Sbjct: 1169 PGELVELRQVEQVNEAMAITGGARAQYTPVLLGITKASLNTDSFISAASFQETTRVLTEA 1228 Query: 121 ALRGRIDWLKGLKENVVLGGIIPVGTGFQKF 29 A+ G+ DWL+GLKENV++G +IP GTG+ + Sbjct: 1229 AIEGKSDWLRGLKENVIIGRLIPAGTGYNTY 1259
>RPOC2_PROMT (Q46J24) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1369 Score = 150 bits (380), Expect = 3e-36 Identities = 79/147 (53%), Positives = 107/147 (72%), Gaps = 4/147 (2%) Frame = -3 Query: 454 AELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELI 275 A+ IA+ + +V+++Q VY+SQGV I ++HIE+I+RQ+TSKVR+ ED FLPGELI Sbjct: 1117 AQEAIAKLQHRMVSEVQNVYKSQGVAIDDKHIEVIVRQMTSKVRI-EDAGDTTFLPGELI 1175 Query: 274 GLLRAERAGRALDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGR 107 L + E +A+ + + +LLGIT+ASLNT SFIS ASFQET RVL +AA+ G+ Sbjct: 1176 ELRQVEDTNQAISITGGAPSEFTPVLLGITKASLNTDSFISAASFQETTRVLTEAAIEGK 1235 Query: 106 IDWLKGLKENVVLGGIIPVGTGFQKFV 26 DWL+GLKENV++G +IP GTGF FV Sbjct: 1236 SDWLRGLKENVIIGRLIPAGTGFSGFV 1262 Score = 41.6 bits (96), Expect = 0.002 Identities = 15/37 (40%), Positives = 27/37 (72%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEAR 554 G+++ +GD L +E+ ++ DI QGLP++E++ EAR Sbjct: 991 GDLVQRGDGLALLVFERQKTGDIVQGLPRIEELLEAR 1027
>RPOC_CYAME (Q85FR6) Bifunctional DNA-directed RNA polymerase beta' and beta''| chain (EC 2.7.7.6) (PEP) [Includes: DNA-directed RNA polymerase beta' chain (Plastid-encoded RNA polymerase beta' subunit) (RNA polymerase beta' subunit); DNA-directed RNA poly Length = 1676 Score = 150 bits (378), Expect = 4e-36 Identities = 93/250 (37%), Positives = 146/250 (58%), Gaps = 42/250 (16%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNL-------ERRIEDW 506 G+++ +GD L + +E+ ++ DI QGLP++E+I EAR + E+ + Sbjct: 1429 GDLVNEGDHLASLVFEQVKTGDIIQGLPRIEEILEARKPKNSCELAQFDGVIQEQSLVSD 1488 Query: 505 NERIPRILG----------------------------------VPW-GFLIGAELTIAQS 431 + R+ I G VP+ G + A + A+ Sbjct: 1489 DGRVQAIKGTLIVCEGTRVQAGEPLTDGAVNAHEWLQIHFNNAVPYRGMVEAARESFAKL 1548 Query: 430 RISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 251 + L++++Q+VY+SQGV I ++HIE+I+RQ+TSKV + + G S+ FLPG+L+ L Sbjct: 1549 QAKLLHQVQQVYKSQGVDIADKHIEVILRQMTSKVILDDPGDSD-FLPGQLVYLNEI--- 1604 Query: 250 GRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVV 71 A + + + +LLGIT+A+LNT+SFIS ASFQET R+LA+AA+ G+ID L+GLKENV+ Sbjct: 1605 --ASYKHVIFHPVLLGITKAALNTESFISAASFQETTRILAQAAMEGQIDQLRGLKENVI 1662 Query: 70 LGGIIPVGTG 41 +G +IP GTG Sbjct: 1663 MGRLIPAGTG 1672
>RPOC2_SYNPX (Q7U8K2) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1364 Score = 148 bits (373), Expect = 2e-35 Identities = 85/171 (49%), Positives = 109/171 (63%), Gaps = 4/171 (2%) Frame = -3 Query: 529 LERRIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEII 350 LE ED R P + A+ IA + LV ++Q VY+SQGV I ++HIE+I Sbjct: 1098 LECFFEDLRSRKP--------LMDAAQEAIANLQHRLVTEVQNVYKSQGVSIDDKHIEVI 1149 Query: 349 IRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGITRASLN 182 +RQ+TSKVRV ED LPGELI L + E +A+ + +LLGIT+ASLN Sbjct: 1150 VRQMTSKVRV-EDAGDTTLLPGELIELRQVEDTNQAMAITGGAPAEFTPVLLGITKASLN 1208 Query: 181 TQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKF 29 T SFIS ASFQET RVL +AA+ G+ DWL+GLKENV++G +IP GTGF F Sbjct: 1209 TDSFISAASFQETTRVLTEAAIEGKSDWLRGLKENVIIGRLIPAGTGFSGF 1259 Score = 41.6 bits (96), Expect = 0.002 Identities = 15/37 (40%), Positives = 27/37 (72%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEAR 554 G+++ +GD L +E+ ++ DI QGLP++E++ EAR Sbjct: 989 GDLVQRGDGLALLVFERQKTGDIVQGLPRIEELLEAR 1025
>RPOC2_PROMM (Q7V5P3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1374 Score = 147 bits (371), Expect = 3e-35 Identities = 78/146 (53%), Positives = 103/146 (70%), Gaps = 4/146 (2%) Frame = -3 Query: 454 AELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELI 275 A+ IA+ + LV ++Q VY+SQGV I ++HIE+I+RQ+TSKVR+ ED LPGELI Sbjct: 1123 AQEAIAKLQHRLVTEVQNVYKSQGVSIDDKHIEVIVRQMTSKVRI-EDAGDTTLLPGELI 1181 Query: 274 GLLRAERAGRAL----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGR 107 L + E +A+ + +LLGIT+ASLNT SFIS ASFQET RVL +AA+ G+ Sbjct: 1182 ELRQVEDTNQAMAITGGAPSEFTPVLLGITKASLNTDSFISAASFQETTRVLTEAAIEGK 1241 Query: 106 IDWLKGLKENVVLGGIIPVGTGFQKF 29 DWL+GLKENV++G +IP GTGF F Sbjct: 1242 SDWLRGLKENVIIGRLIPAGTGFSGF 1267 Score = 41.6 bits (96), Expect = 0.002 Identities = 15/37 (40%), Positives = 27/37 (72%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEAR 554 G+++ +GD L +E+ ++ DI QGLP++E++ EAR Sbjct: 997 GDLVQRGDGLALLVFERQKTGDIVQGLPRIEELLEAR 1033
>RPOC2_SYNY3 (P73334) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1317 Score = 147 bits (371), Expect = 3e-35 Identities = 74/132 (56%), Positives = 98/132 (74%), Gaps = 4/132 (3%) Frame = -3 Query: 421 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 242 LVN++Q VY+SQGV I ++HIE+I+RQ+T+KVR+ +DG LPGEL+ L + E+ A Sbjct: 1093 LVNEVQTVYQSQGVDISDKHIEVIVRQMTAKVRI-DDGGDTTMLPGELVELRQVEQVNEA 1151 Query: 241 L----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 74 + Y +LLGIT+ASLNT SFIS ASFQET RVL +AA+ G+ DWL+GLKENV Sbjct: 1152 MGITGSAPARYTPVLLGITKASLNTDSFISAASFQETTRVLTEAAIEGKSDWLRGLKENV 1211 Query: 73 VLGGIIPVGTGF 38 ++G +IP GTGF Sbjct: 1212 IIGRLIPAGTGF 1223 Score = 44.3 bits (103), Expect = 3e-04 Identities = 16/37 (43%), Positives = 29/37 (78%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEAR 554 G+++ +GD LV +E++++ DI QGLP++E++ EAR Sbjct: 957 GDLVQRGDNLVLLVFERAKTGDIVQGLPRIEELLEAR 993
>RPOC2_CYAPA (P48120) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1265 Score = 145 bits (366), Expect = 1e-34 Identities = 96/273 (35%), Positives = 145/273 (53%), Gaps = 61/273 (22%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEAR----------------------- 554 G+++ G+ L +E++++ DI QGLP++E++ EAR Sbjct: 953 GDLVQSGESLALLVFERAKTGDIIQGLPRIEELLEARKPKDNCVLSTHPGFTQLYYSETI 1012 Query: 553 -----SIDSLSPNLERR------------------IEDWNERIPRILGVPWGFLIGAE-- 449 S+D ++ LE + + + + + IL + + Sbjct: 1013 ELKIKSLDKINTLLELQPGVFPTVTNNQFIEAGAPLSEGDISVHEILEIFFNLYFKNRVN 1072 Query: 448 -LTIAQSRISLVNKIQK--------VYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNV 296 L++A + + KIQ+ VY+SQG+ I ++HIEIII+Q+T+KV++ E+G Sbjct: 1073 CLSLADAIHLSLQKIQQFLVSEVQSVYQSQGIDISDKHIEIIIKQMTNKVKI-EEGGDTT 1131 Query: 295 FLPGELIGLLRAERAGRALDES----IYYRAILLGITRASLNTQSFISEASFQETARVLA 128 LP ELI + E+ S Y ILLGIT++SLNTQSFIS ASFQET RVLA Sbjct: 1132 LLPNELIEFQQIEKMNEKFSTSNGQLASYTPILLGITKSSLNTQSFISAASFQETTRVLA 1191 Query: 127 KAALRGRIDWLKGLKENVVLGGIIPVGTGFQKF 29 KAA+ G+ID L+GLKENV++G +IP GTGF + Sbjct: 1192 KAAVEGKIDQLRGLKENVIIGNLIPAGTGFSAY 1224
>RPOC2_CYACA (Q9TM34) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1269 Score = 143 bits (361), Expect = 4e-34 Identities = 71/134 (52%), Positives = 103/134 (76%), Gaps = 4/134 (2%) Frame = -3 Query: 430 RISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 251 R+ L+ +IQ+VY+SQ ++I+++HIE+IIRQ+TSKV + E G + +F PGEL+ + + E+ Sbjct: 1098 RLELLKEIQQVYQSQKIEINDKHIEVIIRQMTSKVLIQERGDTTLF-PGELVTINQIEKI 1156 Query: 250 GRAL----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLK 83 A+ + Y+ +LLGIT+ASLNT SFIS ASFQET R+L +AA+ G++DWLKGLK Sbjct: 1157 NSAIIAVNKKEAKYKPVLLGITKASLNTDSFISAASFQETTRILTEAAIEGKVDWLKGLK 1216 Query: 82 ENVVLGGIIPVGTG 41 ENV++G +IP GTG Sbjct: 1217 ENVIIGRLIPGGTG 1230 Score = 44.7 bits (104), Expect = 3e-04 Identities = 18/39 (46%), Positives = 29/39 (74%) Frame = -3 Query: 670 HYGEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEAR 554 ++GE++ KGD L ++K ++ DI QGLP++E+I EAR Sbjct: 963 NHGELIRKGDYLALLVFDKIKTGDIIQGLPRIEEILEAR 1001
>RPOC2_NEPOL (Q9TL04) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1463 Score = 142 bits (358), Expect = 9e-34 Identities = 85/197 (43%), Positives = 123/197 (62%), Gaps = 3/197 (1%) Frame = -3 Query: 622 YEKSRSSDITQGLPKVEQIFEAR---SIDSLSPNLERRIEDWNERIPRILGVPWGFLIGA 452 Y K+++ DI QGLPK+E+I EAR + + NL+ ++ + + L + + Sbjct: 1151 YFKTKTGDIVQGLPKIEEILEARRKKGNEIIRSNLQDFVQQFYQDN---LDEGFSRKYAS 1207 Query: 451 ELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG 272 T+ ++ ++ ++Q VYRSQGVQI ++H+EII ++TS+V V E LPGE+I Sbjct: 1208 TRTMRAMQVLILRRVQLVYRSQGVQISDKHLEIISLRMTSRVLV-EKAYGTGILPGEIIE 1266 Query: 271 LLRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLK 92 RA+ + I Y I+LGIT+ASL T+ FIS ASFQET RVL +A L+G+ DWL Sbjct: 1267 KRRADMLNQGRTR-IRYCPIVLGITKASLTTKGFISSASFQETTRVLTQAVLQGKSDWLL 1325 Query: 91 GLKENVVLGGIIPVGTG 41 GLKENV+LG +IP G G Sbjct: 1326 GLKENVILGRLIPAGVG 1342
>RPOC2_ASTLO (P58132) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 817 Score = 142 bits (357), Expect = 1e-33 Identities = 84/214 (39%), Positives = 128/214 (59%), Gaps = 6/214 (2%) Frame = -3 Query: 658 ILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARS--IDSLSPNLERRIED----WNER 497 I+ K L +K ++ DI QGL ++E++FEA+ I + NL ++D +N++ Sbjct: 613 IMKKNALLYKAVTKKEKNKDIIQGLVEIEKLFEAKKSFIIDKTKNLHEILKDLFVNYNKK 672 Query: 496 IPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVS 317 + I Q I + +IQ +Y+ QG+ I N+HIEIII+Q+TSKV + Sbjct: 673 YNNSTSTR------KSIEIIQKYI--LEEIQSIYKEQGINISNKHIEIIIKQMTSKVIIK 724 Query: 316 EDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETAR 137 G S F+ GE+ + + + + I Y ILLGIT++SL TQSFIS+ +FQE+ + Sbjct: 725 NAGNSP-FIVGEICNINSIDNLNKNYEHKIIYEPILLGITKSSLYTQSFISQITFQESIK 783 Query: 136 VLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQ 35 L KAA+ +IDWL GLKEN++LG +IP+GTGF+ Sbjct: 784 SLIKAAIENKIDWLYGLKENLILGNLIPIGTGFK 817
>RPOC2_SYNP6 (Q5MZ21) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1318 Score = 142 bits (357), Expect = 1e-33 Identities = 71/135 (52%), Positives = 98/135 (72%), Gaps = 4/135 (2%) Frame = -3 Query: 421 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 242 LVN++Q VY+SQG+ I ++HIE+I+RQ+TSKVR+ +DG + LPGEL L + Sbjct: 1106 LVNEVQSVYQSQGIDISDKHIEVIVRQMTSKVRI-DDGGDTIMLPGELHELREVYNSNNT 1164 Query: 241 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 74 + + + +LLGIT+ASLNT SFIS ASFQET RVL +AA+ G+ DWL+GLKENV Sbjct: 1165 MALTGMAPAQFTPVLLGITKASLNTNSFISAASFQETTRVLTEAAIEGKSDWLRGLKENV 1224 Query: 73 VLGGIIPVGTGFQKF 29 ++G +IP GTGF+ + Sbjct: 1225 IIGRLIPAGTGFKAY 1239 Score = 40.8 bits (94), Expect = 0.004 Identities = 15/35 (42%), Positives = 27/35 (77%) Frame = -3 Query: 658 ILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEAR 554 ++ +GD LV +E++++ DI QGLP++E++ EAR Sbjct: 971 LVQRGDNLVLLVFERAKTGDIIQGLPRIEELLEAR 1005
>RPOC_THETN (Q8R7U7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1183 Score = 140 bits (354), Expect = 3e-33 Identities = 92/234 (39%), Positives = 134/234 (57%), Gaps = 43/234 (18%) Frame = -3 Query: 601 DITQGLPKVEQIFEARS---------------IDSLSPNLERRIEDWNERIPRILGVPWG 467 DITQGLP+VE++FEAR I+ E + D I + +P+G Sbjct: 923 DITQGLPRVEELFEARKPKGLAVITEISGVVRINESKKRREITVVDEENNISKTYLIPYG 982 Query: 466 FLI----------GAELT--------------IAQSRISLVNKIQKVYRSQGVQIHNRHI 359 + G ELT I + L+ ++QKVYR QGV+I+++HI Sbjct: 983 SRLKVRDGQWVQAGDELTEGSVNPHDLLKIKGIYAVQSYLLQEVQKVYRLQGVEINDKHI 1042 Query: 358 EIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR-ALDESIYY---RAILLGITRA 191 EIIIRQ+ KV+V + G +++ LPGELI + + E + A+++ + R LLGIT+A Sbjct: 1043 EIIIRQMMKKVKVEDPGDTSM-LPGELIDMFKFEEENKKAIEKGLRPATGRRALLGITKA 1101 Query: 190 SLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKF 29 +L T SF+S ASFQET RVL AA++G++D L GLKENV++G +IP GTG ++ Sbjct: 1102 ALATDSFLSAASFQETTRVLTDAAIKGKVDPLIGLKENVIIGKLIPAGTGLSRY 1155
>RPOC_CLOPE (Q93R87) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1178 Score = 139 bits (351), Expect = 6e-33 Identities = 95/243 (39%), Positives = 136/243 (55%), Gaps = 42/243 (17%) Frame = -3 Query: 631 TFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLER----RIEDWNER----------- 497 TF +DITQGLP+VE++FEAR L+ E RIE+ ++ Sbjct: 915 TFHTGGVAGADITQGLPRVEELFEARKPKGLAIVSEVAGTVRIEETKKKRTVYVVTDSGE 974 Query: 496 -----IP--RILGVPWGFLIGAELTIAQSRIS----------------LVNKIQKVYRSQ 386 IP L V G IGA I + ++ L++++QKVYR Q Sbjct: 975 EYSYDIPFGSRLKVKDGIAIGAGDEITEGSVNPHDIMSIKGVDGAREYLLSEVQKVYRLQ 1034 Query: 385 GVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLL----RAERAGRALDESIYYR 218 GV I+++H+E+++RQ+T K++V+E G +N+ LPG +I + ER E Sbjct: 1035 GVDINDKHLEVVVRQMTRKIKVTEQGDTNL-LPGVMIDMFDFRAENERVESFGGEKAQGD 1093 Query: 217 AILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGF 38 +LLGIT+A+L T SF+S ASFQET RVL AA++G+ID L GLKENV++G +IP GTG Sbjct: 1094 IVLLGITKAALATDSFLSAASFQETTRVLTDAAIKGKIDPLVGLKENVIIGKLIPAGTGM 1153 Query: 37 QKF 29 K+ Sbjct: 1154 MKY 1156
>RPOC_METCA (Q60A05) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1400 Score = 139 bits (349), Expect = 1e-32 Identities = 100/263 (38%), Positives = 139/263 (52%), Gaps = 43/263 (16%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE------------- 524 G+++ GD L E S++ DIT GLP+V +FEAR + E Sbjct: 1112 GDLVEVGDVLARIPQESSKTRDITGGLPRVADLFEARKTKDPAILAEATGTVSFGKETKG 1171 Query: 523 -RRI-------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS---------------- 422 RR+ E +P R + V G + TIA+ ++ Sbjct: 1172 KRRLIITDASGEQHEVMVPKWRNITVFEGEHVEQGETIAEGELTPHDILRLRGTAELASY 1231 Query: 421 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 242 LV +IQ VYR QGV+I+++HIE+IIRQ+ KV +++ G S+ FL GE + R Sbjct: 1232 LVKEIQDVYRLQGVKINDKHIEVIIRQMLRKVEITDPGDSS-FLRGEQVDRSRLLEENDR 1290 Query: 241 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 74 L+E Y +LLGIT+ASL+T+SFIS ASFQET RVL +AA+RG D L+GLKENV Sbjct: 1291 LEEEGKVPACYEPVLLGITKASLSTESFISAASFQETTRVLTEAAIRGSTDRLQGLKENV 1350 Query: 73 VLGGIIPVGTGFQKFVHRSPQDK 5 ++G +IP GTG R + K Sbjct: 1351 IVGRLIPAGTGLAYHTERRERAK 1373
>RPOC_LACLA (Q9CEN7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 137 bits (346), Expect = 2e-32 Identities = 96/246 (39%), Positives = 135/246 (54%), Gaps = 48/246 (19%) Frame = -3 Query: 607 SSDITQGLPKVEQIFEARS------IDSLSPNLERRIEDWNERIPRI------------- 485 SSDITQGLP+V++IFEAR+ I ++ +E +ED R I Sbjct: 947 SSDITQGLPRVQEIFEARNPKGEAIITEVTGTVESIVEDPATRTREITVKGKTDTRSYTV 1006 Query: 484 -----LGVPWGFLIGAELTIAQSRIS----------------LVNKIQKVYRSQGVQIHN 368 L V G I + Q I L+ ++QK YRSQGV+I + Sbjct: 1007 GMADVLMVEEGEFIHRGAPLIQGSIEPKHLLQVRDALSVETYLLGEVQKTYRSQGVEIGD 1066 Query: 367 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYY--------RAI 212 +HIE+++RQ+ KVRV ++G +++ LPG L+ + E AL+E+ R + Sbjct: 1067 KHIEVMVRQMLRKVRVMDNGSTDI-LPGTLMDISDFE----ALNETALLNGEMPATGRPV 1121 Query: 211 LLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQK 32 L+GIT+ASL T SF+S ASFQET RVL AA+RG+ D L GLKENV++G IIP GTG + Sbjct: 1122 LMGITKASLETNSFLSAASFQETTRVLTDAAIRGKEDHLLGLKENVIIGKIIPAGTGMFR 1181 Query: 31 FVHRSP 14 + + P Sbjct: 1182 YRNIEP 1187
>RPOC_CARHZ (Q3A9Q8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1152 Score = 135 bits (340), Expect = 1e-31 Identities = 92/253 (36%), Positives = 137/253 (54%), Gaps = 43/253 (16%) Frame = -3 Query: 631 TFKYEKSRSSDITQGLPKVEQIFEAR------------SIDSLSPNLERR-IEDWNERIP 491 TF DITQGLP+VE++FEAR + + N RR IE N+ Sbjct: 899 TFHTGGVAGEDITQGLPRVEELFEARRPKGQAIITEIDGVVEVRDNKGRREIEVINQETG 958 Query: 490 RILGVPWGF------------LIGAELT--------------IAQSRISLVNKIQKVYRS 389 P + G ELT I +++ L+ ++QKVYR Sbjct: 959 ERKVYPITYQARIKVQTGDKVYAGDELTEGPINPHDLIKVKGIEGAQLYLLQEVQKVYRM 1018 Query: 388 QGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYY 221 QGV+I+++HIE++IRQ+ KV++ + G +++ LPG L+ + E + + Sbjct: 1019 QGVEINDKHIEVVIRQMLRKVKIEDSGDTDL-LPGSLVDIFEFEDENAKVIAKGGKPATA 1077 Query: 220 RAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTG 41 + +LLGIT+ASL T SF+S ASFQET RVL +AA++G++D L GLKENV++G +IP GTG Sbjct: 1078 KRVLLGITKASLATDSFLSAASFQETTRVLTEAAIKGKVDPLLGLKENVIIGKLIPAGTG 1137 Query: 40 FQKFVHRSPQDKN 2 ++ + Q KN Sbjct: 1138 MARYRNIMVQAKN 1150
>RPOC_LACSS (Q38UQ3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1214 Score = 135 bits (339), Expect = 1e-31 Identities = 91/243 (37%), Positives = 135/243 (55%), Gaps = 46/243 (18%) Frame = -3 Query: 601 DITQGLPKVEQIFEARSIDSLSPNLE----------------RRIEDWNERIPRILGVPW 470 DITQGLP++++IFEAR+ +++ E R I E R VP+ Sbjct: 949 DITQGLPRIQEIFEARNPKAIATITEVTGEVIAVEENPAEHTREITVQGETDTRSYSVPY 1008 Query: 469 --------GFLI--GAELT--------------IAQSRISLVNKIQKVYRSQGVQIHNRH 362 G +I G ++T + + L++++QKVYR QG++I ++H Sbjct: 1009 TSNIIVSEGDMIHRGEKITGGSVDPKQLIKVRDVLSTENYLLHEVQKVYRMQGIEIGDKH 1068 Query: 361 IEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIY------YRAILLGI 200 +E+++RQ+ KVRV + G + + LPG L+ + +E R D I R +LLGI Sbjct: 1069 VEVMVRQMLRKVRVMDPGDTEI-LPGTLMDI--SEFTDRNHDTLISGGVPATCRPVLLGI 1125 Query: 199 TRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHR 20 T+ASL T SF+S ASFQET RVL A++RG+ D L GLKENV++G I+P GTG K+ H Sbjct: 1126 TKASLETNSFLSAASFQETTRVLTDASIRGKSDPLLGLKENVIIGKIVPAGTGMAKYRHM 1185 Query: 19 SPQ 11 P+ Sbjct: 1186 EPK 1188
>RPOC_STRPM (Q48VR0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1213 Score = 134 bits (338), Expect = 2e-31 Identities = 95/246 (38%), Positives = 141/246 (57%), Gaps = 44/246 (17%) Frame = -3 Query: 607 SSDITQGLPKVEQIFEARS------IDSLSPNLERRIEDWNERIPRI-------LG---V 476 ++DITQGLP++++IFEAR+ I + N+ ED + R ++ +G V Sbjct: 948 NTDITQGLPRIQEIFEARNPKGEAVITEVKGNVVEIEEDASTRTKKVYVQGKTGMGEYVV 1007 Query: 475 PWGFLI----------GAELT---IAQSRIS-----------LVNKIQKVYRSQGVQIHN 368 P+ + GA LT I R+ L+ ++QKVYRSQGV+I + Sbjct: 1008 PFTARMKVEVGDEVNRGAALTEGSIQPKRLLEVRDTLSVETYLLAEVQKVYRSQGVEIGD 1067 Query: 367 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES----IYYRAILLGI 200 +H+E+++RQ+ KVRV + G +++ LPG L+ + A + + S R +L+GI Sbjct: 1068 KHVEVMVRQMLRKVRVMDPGDTDL-LPGTLMDISDFTDANKDIVISGGIPATSRPVLMGI 1126 Query: 199 TRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHR 20 T+ASL T SF+S ASFQET RVL AA+RG+ D L GLKENV++G IIP GTG ++ + Sbjct: 1127 TKASLETNSFLSAASFQETTRVLTDAAIRGKKDHLLGLKENVIIGKIIPAGTGMARYRNI 1186 Query: 19 SPQDKN 2 PQ N Sbjct: 1187 EPQAMN 1192
>RPOC_STRP8 (Q8P2Y2) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1213 Score = 134 bits (338), Expect = 2e-31 Identities = 95/246 (38%), Positives = 141/246 (57%), Gaps = 44/246 (17%) Frame = -3 Query: 607 SSDITQGLPKVEQIFEARS------IDSLSPNLERRIEDWNERIPRI-------LG---V 476 ++DITQGLP++++IFEAR+ I + N+ ED + R ++ +G V Sbjct: 948 NTDITQGLPRIQEIFEARNPKGEAVITEVKGNVVEIEEDASTRTKKVYVQGKTGMGEYVV 1007 Query: 475 PWGFLI----------GAELT---IAQSRIS-----------LVNKIQKVYRSQGVQIHN 368 P+ + GA LT I R+ L+ ++QKVYRSQGV+I + Sbjct: 1008 PFTARMKVEVGDEVNRGAALTEGSIQPKRLLEVRDTLSVETYLLAEVQKVYRSQGVEIGD 1067 Query: 367 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES----IYYRAILLGI 200 +H+E+++RQ+ KVRV + G +++ LPG L+ + A + + S R +L+GI Sbjct: 1068 KHVEVMVRQMLRKVRVMDPGDTDL-LPGTLMDISDFTDANKDIVISGGIPATSRPVLMGI 1126 Query: 199 TRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHR 20 T+ASL T SF+S ASFQET RVL AA+RG+ D L GLKENV++G IIP GTG ++ + Sbjct: 1127 TKASLETNSFLSAASFQETTRVLTDAAIRGKKDHLLGLKENVIIGKIIPAGTGMARYRNI 1186 Query: 19 SPQDKN 2 PQ N Sbjct: 1187 EPQAMN 1192
>RPOC_STRP6 (Q5XE96) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1213 Score = 134 bits (338), Expect = 2e-31 Identities = 95/246 (38%), Positives = 141/246 (57%), Gaps = 44/246 (17%) Frame = -3 Query: 607 SSDITQGLPKVEQIFEARS------IDSLSPNLERRIEDWNERIPRI-------LG---V 476 ++DITQGLP++++IFEAR+ I + N+ ED + R ++ +G V Sbjct: 948 NTDITQGLPRIQEIFEARNPKGEAVITEVKGNVVEIEEDASTRTKKVYVQGKTGMGEYVV 1007 Query: 475 PWGFLI----------GAELT---IAQSRIS-----------LVNKIQKVYRSQGVQIHN 368 P+ + GA LT I R+ L+ ++QKVYRSQGV+I + Sbjct: 1008 PFTARMKVEVGDEVNRGAALTEGSIQPKRLLEVRDTLSVETYLLAEVQKVYRSQGVEIGD 1067 Query: 367 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES----IYYRAILLGI 200 +H+E+++RQ+ KVRV + G +++ LPG L+ + A + + S R +L+GI Sbjct: 1068 KHVEVMVRQMLRKVRVMDPGDTDL-LPGTLMDISDFTDANKDIVISGGIPATSRPVLMGI 1126 Query: 199 TRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHR 20 T+ASL T SF+S ASFQET RVL AA+RG+ D L GLKENV++G IIP GTG ++ + Sbjct: 1127 TKASLETNSFLSAASFQETTRVLTDAAIRGKKDHLLGLKENVIIGKIIPAGTGMARYRNI 1186 Query: 19 SPQDKN 2 PQ N Sbjct: 1187 EPQAMN 1192
>RPOC_STRP3 (Q8K8W2) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 134 bits (338), Expect = 2e-31 Identities = 95/246 (38%), Positives = 141/246 (57%), Gaps = 44/246 (17%) Frame = -3 Query: 607 SSDITQGLPKVEQIFEARS------IDSLSPNLERRIEDWNERIPRI-------LG---V 476 ++DITQGLP++++IFEAR+ I + N+ ED + R ++ +G V Sbjct: 948 NTDITQGLPRIQEIFEARNPKGEAVITEVKGNVVEIEEDASTRTKKVYVQGKTGMGEYVV 1007 Query: 475 PWGFLI----------GAELT---IAQSRIS-----------LVNKIQKVYRSQGVQIHN 368 P+ + GA LT I R+ L+ ++QKVYRSQGV+I + Sbjct: 1008 PFTARMKVEVGDEVNRGAALTEGSIQPKRLLEVRDTLSVETYLLAEVQKVYRSQGVEIGD 1067 Query: 367 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES----IYYRAILLGI 200 +H+E+++RQ+ KVRV + G +++ LPG L+ + A + + S R +L+GI Sbjct: 1068 KHVEVMVRQMLRKVRVMDPGDTDL-LPGTLMDISDFTDANKDIVISGGIPATSRPVLMGI 1126 Query: 199 TRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHR 20 T+ASL T SF+S ASFQET RVL AA+RG+ D L GLKENV++G IIP GTG ++ + Sbjct: 1127 TKASLETNSFLSAASFQETTRVLTDAAIRGKKDHLLGLKENVIIGKIIPAGTGMARYRNI 1186 Query: 19 SPQDKN 2 PQ N Sbjct: 1187 EPQAMN 1192
>RPOC_STRP1 (P0C0E0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1213 Score = 134 bits (337), Expect = 3e-31 Identities = 89/246 (36%), Positives = 135/246 (54%), Gaps = 44/246 (17%) Frame = -3 Query: 607 SSDITQGLPKVEQIFEARS------IDSLSPNLERRIEDWNERIPRI------------- 485 ++DITQGLP++++IFEAR+ I + N+ ED + R ++ Sbjct: 948 NTDITQGLPRIQEIFEARNPKGEAVITEVKGNVVEIEEDASTRTKKVYVQGKTGMGEYVI 1007 Query: 484 -----LGVPWGFLIGAELTIAQSRIS----------------LVNKIQKVYRSQGVQIHN 368 + V G + + + I L+ ++QKVYRSQGV+I + Sbjct: 1008 PFTARMKVEVGDEVNRGAALTEGSIQPKRLLEVRDTLSVETYLLAEVQKVYRSQGVEIGD 1067 Query: 367 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES----IYYRAILLGI 200 +H+E+++RQ+ KVRV + G +++ LPG L+ + A + + S R +L+GI Sbjct: 1068 KHVEVMVRQMLRKVRVMDPGDTDL-LPGTLMDISDFTDANKDIVISGGIPATSRPVLMGI 1126 Query: 199 TRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHR 20 T+ASL T SF+S ASFQET RVL AA+RG+ D L GLKENV++G IIP GTG ++ + Sbjct: 1127 TKASLETNSFLSAASFQETTRVLTDAAIRGKKDHLLGLKENVIIGKIIPAGTGMARYRNI 1186 Query: 19 SPQDKN 2 PQ N Sbjct: 1187 EPQAMN 1192
>RPOC_CLOAB (Q97EH0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1182 Score = 134 bits (337), Expect = 3e-31 Identities = 93/243 (38%), Positives = 134/243 (55%), Gaps = 42/243 (17%) Frame = -3 Query: 631 TFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLER----RIEDWNER----------- 497 TF SDITQGLP+VE++FEAR L+ E RIE+ ++ Sbjct: 914 TFHTGGVAGSDITQGLPRVEELFEARKPKGLAIVSEVSGTVRIEETKKKRIVFIATESGE 973 Query: 496 -----IP--RILGVPWGFLIGAELTIAQSRIS----------------LVNKIQKVYRSQ 386 IP L V G IGA I + ++ L++++QKVYR Q Sbjct: 974 EVSYDIPFGSSLKVKNGETIGAGDEITEGSVNPHDIIRIKGVNAVKNYLLSEVQKVYRLQ 1033 Query: 385 GVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES----IYYR 218 GV I+++H+E++IRQ+T KV+V + G + + LPG +I + + ++E+ R Sbjct: 1034 GVDINDKHLEVVIRQMTRKVKVEDSGDTEL-LPGTMIDIFDFRDENKKVEENGGRPAQAR 1092 Query: 217 AILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGF 38 LLGIT+A+L T SF+S ASFQET RVL AA++G+ D L GLKENV +G +IP GTG Sbjct: 1093 VSLLGITKAALATDSFLSAASFQETTRVLTDAAIKGKSDPLVGLKENVTIGKLIPAGTGM 1152 Query: 37 QKF 29 ++ Sbjct: 1153 NRY 1155
>RPOC_BACHK (Q6HPR5) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1203 Score = 134 bits (336), Expect = 3e-31 Identities = 90/244 (36%), Positives = 135/244 (55%), Gaps = 43/244 (17%) Frame = -3 Query: 631 TFKYEKSRSSDITQGLPKVEQIFEARS---------IDSLSPNLERRIEDWNERI----- 494 TF DITQGLP++++IFEAR+ ID + + ++D E + Sbjct: 938 TFHTGGVAGDDITQGLPRIQEIFEARNPKGQAVISEIDGVIAAIND-VKDRQEVVVQGEV 996 Query: 493 -PRILGVPWGFLI----------GAELT--------------IAQSRISLVNKIQKVYRS 389 R +P+G + G ELT I + L+ ++QKVYR Sbjct: 997 EARTYAIPYGARLKVIPGQKISHGKELTEGSIDPKELLKVTDITAVQEYLLREVQKVYRM 1056 Query: 388 QGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYY 221 QGV+I ++H+E+++RQ+ KVRVS+ G ++V LPG L+ + + A + + Sbjct: 1057 QGVEIGDKHVEVMVRQMLRKVRVSDAGETDV-LPGTLLDIHQFTDANAKVLLQGKQPATA 1115 Query: 220 RAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTG 41 R +LLGIT+ASL T SF+S ASFQET RVL AA++G+ D L GLKENV++G ++P GTG Sbjct: 1116 RPVLLGITKASLETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTG 1175 Query: 40 FQKF 29 ++ Sbjct: 1176 MNRY 1179
>RPOC_BACCZ (Q63H97) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1203 Score = 134 bits (336), Expect = 3e-31 Identities = 90/244 (36%), Positives = 135/244 (55%), Gaps = 43/244 (17%) Frame = -3 Query: 631 TFKYEKSRSSDITQGLPKVEQIFEARS---------IDSLSPNLERRIEDWNERI----- 494 TF DITQGLP++++IFEAR+ ID + + ++D E + Sbjct: 938 TFHTGGVAGDDITQGLPRIQEIFEARNPKGQAVISEIDGVIAAIND-VKDRQEVVVQGEV 996 Query: 493 -PRILGVPWGFLI----------GAELT--------------IAQSRISLVNKIQKVYRS 389 R +P+G + G ELT I + L+ ++QKVYR Sbjct: 997 EARTYAIPYGARLKVIPGQKISHGKELTEGSIDPKELLKVTDITAVQEYLLREVQKVYRM 1056 Query: 388 QGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYY 221 QGV+I ++H+E+++RQ+ KVRVS+ G ++V LPG L+ + + A + + Sbjct: 1057 QGVEIGDKHVEVMVRQMLRKVRVSDAGETDV-LPGTLLDIHQFTDANAKVLLQGKQPATA 1115 Query: 220 RAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTG 41 R +LLGIT+ASL T SF+S ASFQET RVL AA++G+ D L GLKENV++G ++P GTG Sbjct: 1116 RPVLLGITKASLETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTG 1175 Query: 40 FQKF 29 ++ Sbjct: 1176 MNRY 1179
>RPOC_BACCR (Q81J47) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1203 Score = 134 bits (336), Expect = 3e-31 Identities = 90/244 (36%), Positives = 135/244 (55%), Gaps = 43/244 (17%) Frame = -3 Query: 631 TFKYEKSRSSDITQGLPKVEQIFEARS---------IDSLSPNLERRIEDWNERI----- 494 TF DITQGLP++++IFEAR+ ID + + ++D E + Sbjct: 938 TFHTGGVAGDDITQGLPRIQEIFEARNPKGQAVISEIDGVIAAIND-VKDRQEVVVQGEV 996 Query: 493 -PRILGVPWGFLI----------GAELT--------------IAQSRISLVNKIQKVYRS 389 R +P+G + G ELT I + L+ ++QKVYR Sbjct: 997 EARTYAIPYGARLKVTPGQPISHGKELTEGSIDPKELLKVTDITAVQEYLLREVQKVYRM 1056 Query: 388 QGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYY 221 QGV+I ++H+E+++RQ+ KVRVS+ G ++V LPG L+ + + A + + Sbjct: 1057 QGVEIGDKHVEVMVRQMLRKVRVSDAGETDV-LPGTLLDIHQFTDANAKVLLQGKQPATA 1115 Query: 220 RAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTG 41 R +LLGIT+ASL T SF+S ASFQET RVL AA++G+ D L GLKENV++G ++P GTG Sbjct: 1116 RPVLLGITKASLETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTG 1175 Query: 40 FQKF 29 ++ Sbjct: 1176 MNRY 1179
>RPOC_BACC1 (Q73FA3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1203 Score = 134 bits (336), Expect = 3e-31 Identities = 90/244 (36%), Positives = 135/244 (55%), Gaps = 43/244 (17%) Frame = -3 Query: 631 TFKYEKSRSSDITQGLPKVEQIFEARS---------IDSLSPNLERRIEDWNERI----- 494 TF DITQGLP++++IFEAR+ ID + + ++D E + Sbjct: 938 TFHTGGVAGDDITQGLPRIQEIFEARNPKGQAVISEIDGVIAAIND-VKDRQEVVVQGEV 996 Query: 493 -PRILGVPWGFLI----------GAELT--------------IAQSRISLVNKIQKVYRS 389 R +P+G + G ELT I + L+ ++QKVYR Sbjct: 997 ETRTYAIPYGARLKVIPGQQISHGKELTEGSIDPKELLKVTDITAVQEYLLREVQKVYRM 1056 Query: 388 QGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYY 221 QGV+I ++H+E+++RQ+ KVRVS+ G ++V LPG L+ + + A + + Sbjct: 1057 QGVEIGDKHVEVMVRQMLRKVRVSDAGETDV-LPGTLLDIHQFTDANAKVLLQGKQPATA 1115 Query: 220 RAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTG 41 R +LLGIT+ASL T SF+S ASFQET RVL AA++G+ D L GLKENV++G ++P GTG Sbjct: 1116 RPVLLGITKASLETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTG 1175 Query: 40 FQKF 29 ++ Sbjct: 1176 MNRY 1179
>RPOC_BACAN (P77819) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1203 Score = 134 bits (336), Expect = 3e-31 Identities = 90/244 (36%), Positives = 135/244 (55%), Gaps = 43/244 (17%) Frame = -3 Query: 631 TFKYEKSRSSDITQGLPKVEQIFEARS---------IDSLSPNLERRIEDWNERI----- 494 TF DITQGLP++++IFEAR+ ID + + ++D E + Sbjct: 938 TFHTGGVAGDDITQGLPRIQEIFEARNPKGQAVISEIDGVIAAIND-VKDRQEVVVQGEV 996 Query: 493 -PRILGVPWGFLI----------GAELT--------------IAQSRISLVNKIQKVYRS 389 R +P+G + G ELT I + L+ ++QKVYR Sbjct: 997 EARTYAIPYGARLKVIPGQKISHGKELTEGSIDPKELLKVTDITAVQEYLLREVQKVYRM 1056 Query: 388 QGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYY 221 QGV+I ++H+E+++RQ+ KVRVS+ G ++V LPG L+ + + A + + Sbjct: 1057 QGVEIGDKHVEVMVRQMLRKVRVSDAGETDV-LPGTLLDIHQFTDANAKVLLQGKQPATA 1115 Query: 220 RAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTG 41 R +LLGIT+ASL T SF+S ASFQET RVL AA++G+ D L GLKENV++G ++P GTG Sbjct: 1116 RPVLLGITKASLETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTG 1175 Query: 40 FQKF 29 ++ Sbjct: 1176 MNRY 1179
>RPOC_PSEAE (Q9HWC9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1399 Score = 134 bits (336), Expect = 3e-31 Identities = 98/256 (38%), Positives = 138/256 (53%), Gaps = 44/256 (17%) Frame = -3 Query: 646 GDRLVTFKYEKSRSSDITQGLPKVEQIFEARS------IDSLSPNL--------ERRI-- 515 GD + E S++ DIT GLP+V +FEAR + +S + +RR+ Sbjct: 1118 GDVVARIPQETSKTRDITGGLPRVADLFEARRPKEPSILAEISGTISFGKETKGKRRLVI 1177 Query: 514 ------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS----------------LVNKI 407 + + E IP R L V G + I+ + +VN+I Sbjct: 1178 TPNDGSDPYEELIPKWRHLNVFEGEQVNRGEVISDGPSNPHDILRLLGVSSLAKYIVNEI 1237 Query: 406 QKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRA----ERAGRAL 239 Q VYR QGV+I+++HIE I+RQ+ KV VSE G S+ F+ G+ + L + E+ G Sbjct: 1238 QDVYRLQGVKINDKHIETILRQMLRKVEVSESGDSS-FIKGDQVELTQVLEENEQLGTED 1296 Query: 238 DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGI 59 Y +LLGIT+ASL+T+SFIS ASFQET RVL +AA+ G+ D+L+GLKENVV+G + Sbjct: 1297 KFPAKYERVLLGITKASLSTESFISAASFQETTRVLTEAAVTGKRDFLRGLKENVVVGRL 1356 Query: 58 IPVGTGFQKFVHRSPQ 11 IP GTG R Q Sbjct: 1357 IPAGTGLAYHSERKRQ 1372
>RPOC2_EMIHU (Q4G3A5) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1267 Score = 134 bits (336), Expect = 3e-31 Identities = 72/145 (49%), Positives = 99/145 (68%), Gaps = 7/145 (4%) Frame = -3 Query: 451 ELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG 272 +L+ ++ L+ +IQ+ YRSQGV I ++H+E+I++Q+TSKV + + G + FLPGE++ Sbjct: 1087 KLSFKLLQLFLIGEIQRTYRSQGVDIADKHVELIVKQMTSKVCIEDSG-TTTFLPGEVLN 1145 Query: 271 L-------LRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALR 113 L AE G Y +LLGIT+ASLN+ SFIS ASFQET RVL +AA+ Sbjct: 1146 FQKMADIALVAENKGEIPPS---YVPLLLGITKASLNSDSFISAASFQETTRVLTEAAIE 1202 Query: 112 GRIDWLKGLKENVVLGGIIPVGTGF 38 GR DWL GLKENV++G +IP GTGF Sbjct: 1203 GRKDWLTGLKENVIIGRLIPAGTGF 1227 Score = 41.6 bits (96), Expect = 0.002 Identities = 18/33 (54%), Positives = 24/33 (72%) Frame = -3 Query: 646 GDRLVTFKYEKSRSSDITQGLPKVEQIFEARSI 548 GD L T YE +++DI QGLPKVE++ EAR + Sbjct: 967 GDILATLVYETIKTTDIVQGLPKVEELLEARKV 999
>RPOC_PSEPU (P19176) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1398 Score = 133 bits (335), Expect = 4e-31 Identities = 100/252 (39%), Positives = 136/252 (53%), Gaps = 43/252 (17%) Frame = -3 Query: 646 GDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE--------------RRI-- 515 GD + E S++ DIT GLP+V +FEAR S E RR+ Sbjct: 1118 GDVIARIPQETSKTRDITGGLPRVADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVI 1177 Query: 514 ------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS----------------LVNKI 407 E + E IP R L V G + I+ + N+I Sbjct: 1178 TPTDGSEPYEELIPKWRHLNVFEGEQVNRGEVISDGPSDPDDILRLLGVSALGKYIDNEI 1237 Query: 406 QKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRA--ERAGRALDE 233 Q VYR QGV+I+++HIE I+RQ+ KVR+SE G S+ F+ G+ + A ERA + D+ Sbjct: 1238 QDVYRLQGVKINDKHIETILRQMLRKVRISESGDSS-FIKGDQMEYPGAGRERASASEDK 1296 Query: 232 SIY-YRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGII 56 I + +LLGIT+ASL+T+SFIS ASFQET RVL +AA+ G+ D+L+GLKENVV+G +I Sbjct: 1297 FISKFTRVLLGITKASLSTESFISAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLI 1356 Query: 55 PVGTGFQKFVHR 20 P GTG R Sbjct: 1357 PAGTGLAYHTER 1368
>RPOC_PELUB (Q4FLL3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1389 Score = 133 bits (335), Expect = 4e-31 Identities = 92/254 (36%), Positives = 133/254 (52%), Gaps = 43/254 (16%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE------------- 524 G+ ++ GD + E +++ DIT GLP+V ++FEAR + E Sbjct: 1105 GQKIFAGDIIARLPKETTKTKDITGGLPRVAELFEARKAKDSAIIAENDGQVLFGKEVRG 1164 Query: 523 -RRI-------EDWNERIPR------------------ILGVPWGFLIGAELTIAQSRIS 422 +RI E N IP+ + G P I L I Sbjct: 1165 KQRISIQPDNGEPSNYLIPKGKHINFNQGEKIKKGEYLLDGQPLPHDILRILGIKDLTEY 1224 Query: 421 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 242 VN++Q+VYR QGV I+++HIE I+RQ+ KV + E G S+ +LPGE+I ++ + Sbjct: 1225 FVNQVQEVYRLQGVIINDKHIETILRQMLKKVEIKESGDSS-YLPGEMIDRIKFDNTNEK 1283 Query: 241 L----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 74 L +L+GIT+ASL T+SFIS ASFQET RVL AA++G++D L GLKENV Sbjct: 1284 LVAEGKNPASGERVLMGITKASLQTESFISAASFQETTRVLTDAAIKGKVDPLNGLKENV 1343 Query: 73 VLGGIIPVGTGFQK 32 ++G ++P GTG K Sbjct: 1344 IVGRLVPAGTGHIK 1357
>RPOC_TROWT (Q820D6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1286 Score = 133 bits (335), Expect = 4e-31 Identities = 94/242 (38%), Positives = 134/242 (55%), Gaps = 43/242 (17%) Frame = -3 Query: 601 DITQGLPKVEQIFEARSIDSLSPNLER----RIEDWNERIPRIL-------GVPWGFLIG 455 DITQGLP+V+++FEAR+ + +P E IED +R R++ + L Sbjct: 1001 DITQGLPRVQELFEARTPRAAAPIAEADGTVSIED-GDRARRLILKSDNNEEFSYTVLKR 1059 Query: 454 AELTIAQ-SRISL---------------------------VNKIQKVYRSQGVQIHNRHI 359 A+L + SR+SL VN +Q+VYRSQGV IHN+HI Sbjct: 1060 AQLRVKDGSRVSLGDQLVEGSLDPKEVLRVKGIRAVQEYLVNGVQQVYRSQGVPIHNKHI 1119 Query: 358 EIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALD----ESIYYRAILLGITRA 191 E+I+RQ+ KV V + G +++ LPGELI R + R ++ R + GIT+A Sbjct: 1120 EVIVRQMLRKVTVVDHGDTSM-LPGELIDQSRYQELNREAQAEGRKTASARQEVTGITKA 1178 Query: 190 SLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRSPQ 11 SL T+S++S ASFQET RVL +A + GR D L GLKENV++G +IP GTG + P+ Sbjct: 1179 SLATESWLSAASFQETTRVLTQAVISGRRDPLIGLKENVIIGNLIPAGTGLSVYRDVEPE 1238 Query: 10 DK 5 + Sbjct: 1239 PR 1240
>RPOC_TROW8 (Q820D9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1286 Score = 133 bits (335), Expect = 4e-31 Identities = 94/242 (38%), Positives = 134/242 (55%), Gaps = 43/242 (17%) Frame = -3 Query: 601 DITQGLPKVEQIFEARSIDSLSPNLER----RIEDWNERIPRIL-------GVPWGFLIG 455 DITQGLP+V+++FEAR+ + +P E IED +R R++ + L Sbjct: 1001 DITQGLPRVQELFEARTPRAAAPIAEADGTVSIED-GDRARRLILKSDNNEEFSYTVLKR 1059 Query: 454 AELTIAQ-SRISL---------------------------VNKIQKVYRSQGVQIHNRHI 359 A+L + SR+SL VN +Q+VYRSQGV IHN+HI Sbjct: 1060 AQLRVKDGSRVSLGDQLVEGSLDPKEVLRVKGIRAVQEYLVNGVQQVYRSQGVPIHNKHI 1119 Query: 358 EIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALD----ESIYYRAILLGITRA 191 E+I+RQ+ KV V + G +++ LPGELI R + R ++ R + GIT+A Sbjct: 1120 EVIVRQMLRKVTVVDHGDTSM-LPGELIDQSRYQELNREAQAEGRKTASARQEVTGITKA 1178 Query: 190 SLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRSPQ 11 SL T+S++S ASFQET RVL +A + GR D L GLKENV++G +IP GTG + P+ Sbjct: 1179 SLATESWLSAASFQETTRVLTQAVISGRRDPLIGLKENVIIGNLIPAGTGLSVYRDVEPE 1238 Query: 10 DK 5 + Sbjct: 1239 PR 1240
>RPOC_STRCO (Q8CJT1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1299 Score = 133 bits (334), Expect = 6e-31 Identities = 90/244 (36%), Positives = 133/244 (54%), Gaps = 43/244 (17%) Frame = -3 Query: 631 TFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLER----RIEDW-------------- 506 TF DITQGLP+V ++FEAR+ ++P E RIE+ Sbjct: 1008 TFHTGGVAGDDITQGLPRVVELFEARTPKGVAPISEASGRVRIEETEKTKKIVVTPDDGS 1067 Query: 505 -------NERIPRILGVPWGFLIGAELTIAQS--------------RISLVNKIQKVYRS 389 ++R ++G +G +LT+ + ++ LV ++QKVY S Sbjct: 1068 DETAFPISKRARLLVGEGDHVEVGQKLTVGATNPHDVLRILGQRAVQVHLVGEVQKVYNS 1127 Query: 388 QGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYY---- 221 QGV IH++HIEIIIRQ+ +V + E G + + LPGEL+ + E R + + + Sbjct: 1128 QGVSIHDKHIEIIIRQMLRRVTIIESGDAEL-LPGELVERTKFETENRRVVQEGGHPASG 1186 Query: 220 RAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTG 41 R L+GIT+ASL T+S++S ASFQET RVL AA+ + D L GLKENV++G +IP GTG Sbjct: 1187 RPQLMGITKASLATESWLSAASFQETTRVLTDAAINAKSDSLIGLKENVIIGKLIPAGTG 1246 Query: 40 FQKF 29 ++ Sbjct: 1247 LSRY 1250
>RPOC_BACSK (Q5WLR9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1206 Score = 132 bits (333), Expect = 7e-31 Identities = 88/242 (36%), Positives = 130/242 (53%), Gaps = 41/242 (16%) Frame = -3 Query: 631 TFKYEKSRSSDITQGLPKVEQIFEARSI-------------------DSLSPNLERRIED 509 TF DITQGLP+++++FEAR+ D ++ +E Sbjct: 938 TFHTGGVAGDDITQGLPRIQELFEARNPKGQAVITEIDGDVVDVRDGDKREVTVQSELET 997 Query: 508 WNERIP--RILGVPWGFLIGAELTIAQSRIS----------------LVNKIQKVYRSQG 383 N IP L V G + A T+ + I L+ ++QKVYR QG Sbjct: 998 KNYSIPYGSRLKVAVGDKVVAGQTLTEGSIDPKELLKVTGMGGVQEYLLREVQKVYRLQG 1057 Query: 382 VQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYY----RA 215 V+I ++H+E+++RQ+ KVRV + G + + LPG L+ + R A + + S R Sbjct: 1058 VEIGDKHVEVMVRQMLRKVRVVDAGDTGI-LPGSLVEIQRFNEANKKVLLSNMRPATGRP 1116 Query: 214 ILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQ 35 +LLGIT+ASL T SF+S ASFQET RVL AA++G+ D L GLKENV++G ++P GTG Sbjct: 1117 VLLGITKASLETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGLA 1176 Query: 34 KF 29 ++ Sbjct: 1177 RY 1178
>RPOC_STRAW (Q82DQ4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1299 Score = 132 bits (332), Expect = 1e-30 Identities = 91/245 (37%), Positives = 133/245 (54%), Gaps = 44/245 (17%) Frame = -3 Query: 631 TFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLER----RIEDWNERIPRILGVPWG- 467 TF DITQGLP+V ++FEAR+ ++P E RIE+ E+ +I+ P Sbjct: 1008 TFHTGGVAGDDITQGLPRVVELFEARTPKGVAPISEASGRVRIEE-TEKTKKIVVTPDDG 1066 Query: 466 ---------------------FLIGAELTIAQS--------------RISLVNKIQKVYR 392 +G +LT+ + ++ LV ++QKVY Sbjct: 1067 SDETAFPISKRARVLVTEGEHVEVGQKLTVGATNPHDVLRILGQRAVQVHLVGEVQKVYN 1126 Query: 391 SQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYY--- 221 SQGV IH++HIEIIIRQ+ +V + E G + + LPGEL+ + E R + + + Sbjct: 1127 SQGVSIHDKHIEIIIRQMLRRVTIIESGDAEL-LPGELVERSKFETENRRVVQEGGHPAS 1185 Query: 220 -RAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGT 44 R L+GIT+ASL T+S++S ASFQET RVL AA+ + D L GLKENV++G +IP GT Sbjct: 1186 GRPQLMGITKASLATESWLSAASFQETTRVLTDAAINAKSDSLIGLKENVIIGKLIPAGT 1245 Query: 43 GFQKF 29 G ++ Sbjct: 1246 GLSRY 1250
>RPOC_SHEON (Q8EK73) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1405 Score = 132 bits (331), Expect = 1e-30 Identities = 97/247 (39%), Positives = 134/247 (54%), Gaps = 44/247 (17%) Frame = -3 Query: 646 GDRLVTFKYEKSRSSDITQGLPKVEQIFEARS------IDSLSPNL--------ERRI-- 515 GD L E S++ DIT GLP+V +FEAR + +S + +RR+ Sbjct: 1118 GDALARIPQESSKTRDITGGLPRVADLFEARKPKEPAILAEISGTISFGKETKGKRRLVI 1177 Query: 514 ------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS----------------LVNKI 407 E + E IP R L V G + IA + +VN++ Sbjct: 1178 TPADGGEQYEEMIPKWRNLNVFEGEKVERGEVIADGPEAAHDILRLRGIHNVANYIVNEV 1237 Query: 406 QKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES- 230 Q VYR QGV+I+++HIE+IIRQ+ K ++ G S FL GE + + R + A R L E Sbjct: 1238 QDVYRLQGVKINDKHIEVIIRQMLRKCVITAAGDSE-FLEGEQVEVSRVKIANRELVEQG 1296 Query: 229 ---IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGI 59 + LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV++G + Sbjct: 1297 KVPATFERELLGITKASLATESFISAASFQETTRVLTEAAVGGKSDNLRGLKENVIVGRL 1356 Query: 58 IPVGTGF 38 IP GTG+ Sbjct: 1357 IPAGTGY 1363
>RPOC_BACHD (Q9Z9M1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1206 Score = 132 bits (331), Expect = 1e-30 Identities = 84/242 (34%), Positives = 130/242 (53%), Gaps = 41/242 (16%) Frame = -3 Query: 631 TFKYEKSRSSDITQGLPKVEQIFEARS-------------IDSLSPNLERRIEDWNERIP 491 TF DITQGLP+++++FEAR+ + +++ +R I E Sbjct: 938 TFHTGGVAGDDITQGLPRIQELFEARNPKGQAVITEIEGEVTNINEADKREITVKGEMET 997 Query: 490 RILGVPWGFLIGAEL--------TIAQSRIS----------------LVNKIQKVYRSQG 383 + +P+G I EL ++ + I L+ ++QKVYR QG Sbjct: 998 KTYSIPYGARIKVELGEQVVPGQSLTEGSIDPKELLKVQGMTGVQEYLLREVQKVYRMQG 1057 Query: 382 VQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYYRA 215 V+I ++H+E+++RQ+ K+RV + G + V LPG LI + + + R Sbjct: 1058 VEIGDKHVEVMVRQMLRKIRVIDAGDTEV-LPGSLIEIQHFNDENKKVLLSGKRPATGRP 1116 Query: 214 ILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQ 35 +LLGIT+ASL T SF+S ASFQET RVL AA++G+ D L GLKENV++G ++P GTG Sbjct: 1117 VLLGITKASLETDSFLSAASFQETTRVLTDAAIKGKRDELVGLKENVIIGKLVPAGTGMN 1176 Query: 34 KF 29 ++ Sbjct: 1177 RY 1178
>RPOC2_ODOSI (P49468) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1481 Score = 131 bits (330), Expect = 2e-30 Identities = 90/260 (34%), Positives = 132/260 (50%), Gaps = 52/260 (20%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNL-----------ERR 518 GE + G + +EK + DI QGLP+VEQ+ EAR ++ NL Sbjct: 1206 GEFVKNGQTIGLLNFEKEITGDIVQGLPRVEQLLEARKKKQITKNLPINKKKGLLTQTTS 1265 Query: 517 IEDW------------NERI--PRILGVPWGF-----LIGAELTIAQSRISLVNKIQKVY 395 I+ + NE+I +L V + + E + + L N + Y Sbjct: 1266 IDSYFEFKKLGTSIKENEKINPHNLLKVYFNYYGLIKTFFCENSYTKDSYRLFNNYEASY 1325 Query: 394 R------------------SQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGL 269 R SQGV I ++H+E+II+Q+T+KV ++ G +++ LP E+I L Sbjct: 1326 RSFKKVQSLILNSVQSVYKSQGVSIADKHLEVIIKQMTTKVLITHQGNTSL-LPREVIDL 1384 Query: 268 LRAERAGRAL----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRID 101 E + Y +LLGIT+A+LN SFIS ASFQET RVL KAA+ GR+D Sbjct: 1385 YHIEYINKIARIHKKHPALYVPLLLGITKAALNNPSFISAASFQETTRVLTKAAIEGRVD 1444 Query: 100 WLKGLKENVVLGGIIPVGTG 41 WL+GLKEN+++G ++P GTG Sbjct: 1445 WLRGLKENIIIGHLMPAGTG 1464
>RPOC_ZYMMO (Q5NPK4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1391 Score = 131 bits (330), Expect = 2e-30 Identities = 97/254 (38%), Positives = 136/254 (53%), Gaps = 46/254 (18%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARS------IDSLSPNLER------ 521 G+ + G L E +++ DIT GLP+V ++FEAR I +S +E Sbjct: 1096 GQEVLAGTVLARVSRESAKTRDITGGLPRVAELFEARKPKENAIIAKVSGRVEFGKDYKA 1155 Query: 520 ------RIEDWNERIPRILGVPWGFLIGAE------------------------LTIAQS 431 R +D +E I + VP +I A+ L + Sbjct: 1156 KRKVIIRPDDGSEPIEYL--VPKSKVIDAQEGDHVKRGDNLISGSPDPHDILEVLGVEAL 1213 Query: 430 RISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 251 LV++IQ+VYR QGV+I+++HIE I+RQ+ KV ++ G S +FLPGE + E Sbjct: 1214 AEYLVSEIQEVYRLQGVKINDKHIETIVRQMLLKVEITHAGDS-IFLPGEQVEKEDFEAV 1272 Query: 250 GRALD----ESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLK 83 L+ E ILLGIT+ASL T+SFIS ASFQET RVL +AA++G+ID L GLK Sbjct: 1273 NAKLESQGQEPAQATPILLGITKASLQTRSFISAASFQETTRVLTEAAVQGKIDTLSGLK 1332 Query: 82 ENVVLGGIIPVGTG 41 ENV++G +IP GTG Sbjct: 1333 ENVIVGRLIPAGTG 1346
>RPOC_FUSNN (Q8RHI7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1319 Score = 131 bits (330), Expect = 2e-30 Identities = 94/258 (36%), Positives = 138/258 (53%), Gaps = 46/258 (17%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARS-------------IDSLSP--- 533 G + KGD + + DIT GLP+V+++FEAR+ I+ L+ Sbjct: 1047 GAKVKKGDIIAKIIKLGEGTKDITGGLPRVQELFEARNPKGKATLAEIDGRIEILTTKKK 1106 Query: 532 --------NLERRIEDWNERIP--RILGVPWGFLIGAELTIAQSRIS------------- 422 +LE E IP L V G I A I + IS Sbjct: 1107 QMRVVNVRSLENPEEFKEYLIPMGERLVVTDGLKIKAGDKITEGAISPYDVLNIKGLVAA 1166 Query: 421 ---LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 251 ++ +Q+VYR QGV ++++HIEII++Q+ KVR+ + G S +FL E+I + Sbjct: 1167 EQFILESVQQVYRDQGVTVNDKHIEIIVKQMFRKVRIIDSGAS-LFLEDEVIEKRVVDLE 1225 Query: 250 GRALDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLK 83 + L+E I Y ++ GIT+A++NT SFIS ASFQET +VL+ AA+ G++D+L+GLK Sbjct: 1226 NKKLEEQGKALIKYEPVIQGITKAAVNTGSFISAASFQETTKVLSNAAIEGKVDYLEGLK 1285 Query: 82 ENVVLGGIIPVGTGFQKF 29 ENV+LG IP GTGF K+ Sbjct: 1286 ENVILGKKIPAGTGFNKY 1303
>RPOC_THEFY (Q47LI6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1291 Score = 131 bits (329), Expect = 2e-30 Identities = 90/245 (36%), Positives = 135/245 (55%), Gaps = 44/245 (17%) Frame = -3 Query: 631 TFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLER----RIEDWNERIPRILGVPWG- 467 TF + DIT GLP+V+++FEAR ++P E RIE+ ++ +I+ VP Sbjct: 1000 TFHMGGTAGQDITHGLPRVQELFEARVPKGVAPISEVEGRVRIEE-TDKSRKIIVVPDDG 1058 Query: 466 -------------FLI--GAELTIAQSRIS--------------------LVNKIQKVYR 392 L+ G + + Q + LV+++Q+VY+ Sbjct: 1059 SDEVSYQVPMRAPLLVQDGQRVEVGQQLVQGTVNPHEILRILGPRAVQQHLVSEVQEVYK 1118 Query: 391 SQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIY 224 SQGV IH++HIEII+RQ+ +V V E G + + LPGE+I + E R + + Sbjct: 1119 SQGVSIHDKHIEIIVRQMLKRVNVLESGDTKL-LPGEMIERPKFEEINRRVVAEGGQPAS 1177 Query: 223 YRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGT 44 R +LLGIT+ASL T+S++S ASFQET RVL + A+ G+ D L GLKENV++G +IP GT Sbjct: 1178 ARPVLLGITKASLATESWLSAASFQETTRVLTENAIHGKSDPLLGLKENVIIGKLIPAGT 1237 Query: 43 GFQKF 29 G ++ Sbjct: 1238 GMPQY 1242
>RPOC_ACIAD (Q6FF89) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1397 Score = 131 bits (329), Expect = 2e-30 Identities = 97/263 (36%), Positives = 138/263 (52%), Gaps = 44/263 (16%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEAR---------------SIDSLSPN 530 GE + GD L E SR+ DIT GLP+V +FEAR S + Sbjct: 1108 GETIGVGDVLGRVPQETSRTRDITGGLPRVADLFEARKPKEHAILAEVSGIVSFGKETKG 1167 Query: 529 LERRI-------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS--------------- 422 R + E + E IP R + V G + TI+ + Sbjct: 1168 KNRLVITPDDGSEIYEELIPKWRTINVFEGEHVNRGETISDGPQNPHDILRLKGEVALTN 1227 Query: 421 -LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR 245 +VN++Q VYR QGV+I+++HIE+I+RQ+ KV ++ DG F+ GE + +R + + Sbjct: 1228 YIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKVDIT-DGGDTSFIKGEQVDYIRVVQENQ 1286 Query: 244 ALDESIYYRAI----LLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKEN 77 A+ + A L+GIT+ASL+T SFIS ASFQET RVL +AA+ G+ D L+GLKEN Sbjct: 1287 AVLAQNKFPAKFERQLMGITKASLSTDSFISAASFQETTRVLTEAAVTGKEDDLRGLKEN 1346 Query: 76 VVLGGIIPVGTGFQKFVHRSPQD 8 VV+G +IP GTG + R Q+ Sbjct: 1347 VVVGRLIPAGTGLAYHLERRRQE 1369
>RPOC_PSEHT (Q3ILP8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1390 Score = 131 bits (329), Expect = 2e-30 Identities = 98/263 (37%), Positives = 134/263 (50%), Gaps = 43/263 (16%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEAR---------------SIDSLSPN 530 G + GD L E S++ DIT GLP+V +FEAR S + Sbjct: 1098 GTTVNPGDVLARIPQEGSKTRDITGGLPRVADLFEARKPKEPAILAEVTGTISFGKETKG 1157 Query: 529 LERRI------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS---------------- 422 +R + + + E IP R L V G + IA S Sbjct: 1158 KKRLVITPDEGDHYEEMIPKWRQLNVFEGERVSKGEVIADGPESPHDILRLRGVTHVANY 1217 Query: 421 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 242 +VN++Q+VYR QGV+I+++HIE IIRQ+ K + G ++ FL GE I + R A R Sbjct: 1218 IVNEVQEVYRLQGVKINDKHIETIIRQMLRKCTIMHGGDTD-FLAGEQIEVARVNIANRD 1276 Query: 241 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 74 L+ + L+GIT+ASL T+SFIS ASFQET RVL AA+ G+ D L+GLKENV Sbjct: 1277 LEAQGKIPAKFEIQLMGITKASLATESFISAASFQETTRVLTDAAVNGKSDELRGLKENV 1336 Query: 73 VLGGIIPVGTGFQKFVHRSPQDK 5 ++G +IP GTGF R + K Sbjct: 1337 IVGRLIPAGTGFSYHQERMARRK 1359
>RPOC_PSEPK (Q88QP1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1399 Score = 130 bits (328), Expect = 3e-30 Identities = 96/246 (39%), Positives = 133/246 (54%), Gaps = 44/246 (17%) Frame = -3 Query: 646 GDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE--------------RRI-- 515 GD + E S++ DIT GLP+V +FEAR S E RR+ Sbjct: 1118 GDVIARIPQETSKTRDITGGLPRVADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVI 1177 Query: 514 ------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS----------------LVNKI 407 E + E IP R L V G + I+ +VN+I Sbjct: 1178 TPTDGSEPYEELIPKWRHLNVFEGEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEI 1237 Query: 406 QKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRA--ERAGRALDE 233 Q VYR QGV+I+++HIE I+RQ+ KV +SE G S+ F+ G+ + L + E A ++ Sbjct: 1238 QDVYRLQGVKINDKHIETILRQMLRKVEISESGDSS-FIKGDQMELTQVLVENERLASED 1296 Query: 232 SIY--YRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGI 59 + +LLGIT+ASL+T+SFIS ASFQET RVL +AA+ G+ D+L+GLKENVV+G + Sbjct: 1297 KFISKFTRVLLGITKASLSTESFISAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRL 1356 Query: 58 IPVGTG 41 IP GTG Sbjct: 1357 IPAGTG 1362
>RPOC_COLP3 (Q47UW0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1406 Score = 130 bits (328), Expect = 3e-30 Identities = 90/253 (35%), Positives = 134/253 (52%), Gaps = 43/253 (16%) Frame = -3 Query: 646 GDRLVTFKYEKSRSSDITQGLPKVEQIFEARS------------IDSLSPNLERRI---- 515 GD L S++ DIT GLP+V +FEAR + + + ++ Sbjct: 1118 GDALARIPQASSKTRDITGGLPRVADLFEARKPKLPAILAEKTGVVAFGKETKGKVRLLI 1177 Query: 514 -----EDWNERIP--RILGVPWGFLIGAELTIAQSRIS----------------LVNKIQ 404 E + E IP R+L + G + IA S +VN++Q Sbjct: 1178 TQPSGEVYEEMIPKTRLLNIYEGEPVIKGEVIADGPESPHDILRLRGVAPVANYIVNEVQ 1237 Query: 403 KVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALD---- 236 +VYR QGV+I+++HIE+I+RQ+ K + + G S FL GE + + R + R L+ Sbjct: 1238 EVYRLQGVKINDKHIEVIVRQMIRKCEILDAGDST-FLKGEQVEVARVNISNRELEAEGK 1296 Query: 235 ESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGII 56 + Y ++GIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV++G +I Sbjct: 1297 QPAEYEMQMMGITKASLATESFISAASFQETTRVLTEAAVAGKKDGLRGLKENVIVGRLI 1356 Query: 55 PVGTGFQKFVHRS 17 P GTG+ R+ Sbjct: 1357 PAGTGYSYHQERA 1369
>RPOC2_PSEAK (Q3ZJ90) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 3462 Score = 130 bits (327), Expect = 4e-30 Identities = 84/219 (38%), Positives = 127/219 (57%), Gaps = 11/219 (5%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERIPRI 485 G+ + L+ KY+ ++ DI QG+PK+EQ+FEAR E++ + + Sbjct: 3238 GDFVKNQSPLLNLKYKSLKTEDIVQGIPKIEQLFEAR-------------ENFQDELGIN 3284 Query: 484 LGVPWGFLIGAELTIAQSRIS---------LVNKIQKVYRSQGVQIHNRHIEIIIRQVTS 332 + FL+ L + + +++ IQ VY+SQGV I ++HIEII++Q+TS Sbjct: 3285 NLLKNKFLVYKTLYHPKEAVRKSFEFIQHYIIDGIQYVYQSQGVNISDKHIEIIVKQMTS 3344 Query: 331 KVRVSEDGMSNVFLPGELIGLLRAERAGRAL--DESIYYRAILLGITRASLNTQSFISEA 158 KVR+ E S + L G+++ L ER + + Y I+LGIT+ASL+ + FIS A Sbjct: 3345 KVRILEPRNSGL-LRGDVVDLDWIERINLDILTGKKAQYEPIVLGITKASLDRRGFISAA 3403 Query: 157 SFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTG 41 SFQET +VL KA + R D+L+GLKENV+LG +I GTG Sbjct: 3404 SFQETIKVLTKATILQRRDYLRGLKENVILGHLINSGTG 3442
>RPOC_BLOPB (Q492C0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1416 Score = 130 bits (326), Expect = 5e-30 Identities = 101/261 (38%), Positives = 141/261 (54%), Gaps = 47/261 (18%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARS------IDSLSPNL-------- 527 G + GD L +E S + DIT GLP+V +FEAR + +S + Sbjct: 1116 GSRIICGDILARLPHESSGTKDITGGLPRVADLFEARRPKESAILAEISGTISFGKETKG 1175 Query: 526 ERR-----IED---WNERIP--RILGVPWGFLIGAELTIAQSRIS--------------- 422 +RR IED + E IP R L V G + I+ S Sbjct: 1176 KRRLMISPIEDGDVYEEMIPKWRHLNVFEGEYVDRGDIISDGPESPHDILRLRGVHAVTR 1235 Query: 421 -LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR 245 +VN++Q VYR QGV+I+++HIE+I+RQ+ K V G S+ FL GE + R + A R Sbjct: 1236 YIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATVIRSGSSD-FLVGEQVEYSRIKIANR 1294 Query: 244 ALDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKEN 77 L+ I + LLGIT+ASL T+SFIS ASFQET RVL ++++ G+ D L+GLKEN Sbjct: 1295 KLENEGKVKISFIRNLLGITKASLATESFISAASFQETTRVLTESSVAGKRDELRGLKEN 1354 Query: 76 VVLGGIIPVGTGF---QKFVH 23 V++G +IP GTG+ Q+ VH Sbjct: 1355 VIVGRLIPAGTGYSYHQERVH 1375
>RPOC_PSEPF (Q3K5Y2) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1399 Score = 130 bits (326), Expect = 5e-30 Identities = 97/246 (39%), Positives = 133/246 (54%), Gaps = 44/246 (17%) Frame = -3 Query: 646 GDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE--------------RRI-- 515 GD + E S++ DIT GLP+V +FEAR S E RR+ Sbjct: 1118 GDVIARIPQETSKTRDITGGLPRVADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVI 1177 Query: 514 ------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS----------------LVNKI 407 + + E IP R L V G + I+ +VN+I Sbjct: 1178 TPNDGSDPYEELIPKWRHLNVFEGEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEI 1237 Query: 406 QKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPG---ELIGLLRAERAGRALD 236 Q VYR QGV+I+++HIE I+RQ+ KV +SE G S+ F+ G EL +L A D Sbjct: 1238 QDVYRLQGVKINDKHIETILRQMLRKVEISESGDSS-FIKGDQMELTHVLVENERLNAED 1296 Query: 235 ESIY-YRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGI 59 + + + +LLGIT+ASL+T+SFIS ASFQET RVL +AA+ G+ D+L+GLKENVV+G + Sbjct: 1297 KFVSKFTRVLLGITKASLSTESFISAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRL 1356 Query: 58 IPVGTG 41 IP GTG Sbjct: 1357 IPAGTG 1362
>RPOC_PHOLL (Q7N9A3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1406 Score = 130 bits (326), Expect = 5e-30 Identities = 95/253 (37%), Positives = 133/253 (52%), Gaps = 44/253 (17%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEAR------------SIDSLSPNLE- 524 G + GD L E + DIT GLP+V +FEAR I S + Sbjct: 1112 GVSISAGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEVSGIVSFGKETKG 1171 Query: 523 -RRI--------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS--------------- 422 RR+ + + E IP R L V G ++ I+ S Sbjct: 1172 KRRLVISPLDGGDAYEEMIPKWRQLNVFEGEVVERGDVISDGPESPHDILRLRGVHAVTR 1231 Query: 421 -LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR 245 + N++Q+VYR QGV+I+++HIE+I+RQ+ K + G S FL GE + R + A R Sbjct: 1232 YITNEVQEVYRLQGVKINDKHIEVIVRQMLRKATIESAGSSE-FLEGEQVEYARVKVANR 1290 Query: 244 ALDE----SIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKEN 77 L++ + Y LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKEN Sbjct: 1291 KLEQEGKVAATYGRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKEN 1350 Query: 76 VVLGGIIPVGTGF 38 V++G +IP GTG+ Sbjct: 1351 VIVGRLIPAGTGY 1363
>RPOC_SHEVI (Q9KW13) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1409 Score = 130 bits (326), Expect = 5e-30 Identities = 97/247 (39%), Positives = 136/247 (55%), Gaps = 44/247 (17%) Frame = -3 Query: 646 GDRLVTFKYEKSRSSDITQGLPKVEQIFEARS------IDSLSPNL--------ERRI-- 515 GD L E S++ DIT GLP+V +FEAR + S + +RR+ Sbjct: 1119 GDALARIPQESSKTRDITGGLPRVADLFEARKPKEPAILAEYSGTISFGKETKGKRRLLI 1178 Query: 514 ------EDWNERIP--RILGVPWGFLI--------GAELTIAQSRIS--------LVNKI 407 + + E IP R L V G + GAE R+ +VN++ Sbjct: 1179 TPADGGKPYEEMIPKWRNLNVFEGEKVERGEVIADGAEAAHDILRLRGIHKVANYIVNEV 1238 Query: 406 QKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALD--- 236 Q VYR QGV+I+++HIE+IIRQ+ K +++ G S FL GE + R + A R L+ Sbjct: 1239 QDVYRLQGVKINDKHIEVIIRQMLRKCLITDAGDSQ-FLAGEQAEVARVKIANRELEAQG 1297 Query: 235 -ESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGI 59 + + LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV++G + Sbjct: 1298 KKPATFDRELLGITKASLATESFISAASFQETTRVLTEAAVGGKSDKLRGLKENVIVGRL 1357 Query: 58 IPVGTGF 38 IP GTG+ Sbjct: 1358 IPAGTGY 1364
>RPOC_ENTFA (Q82Z41) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1217 Score = 129 bits (325), Expect = 6e-30 Identities = 92/254 (36%), Positives = 134/254 (52%), Gaps = 46/254 (18%) Frame = -3 Query: 631 TFKYEKSRSSDITQGLPKVEQIFEARS----------------IDSLSPNLERRIEDWNE 500 TF DITQGLP++++IFEAR+ I ++ + + Sbjct: 938 TFHTGGVAGDDITQGLPRIQEIFEARNPKGQAVITEVTGEVIDISEDPATRQKEVTIKGK 997 Query: 499 RIPRILGVPW--------GFLI--GAELT--------------IAQSRISLVNKIQKVYR 392 R VP+ G +I GA LT + L+ ++Q+VYR Sbjct: 998 TDTRTYTVPYTARMKVAEGDIIHRGAPLTEGSIDPKQLLQVRDVLSVENYLLREVQRVYR 1057 Query: 391 SQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIY---- 224 QGV+I ++HIE+++RQ+ K+RV + G + + LPG L+ + AE R D + Sbjct: 1058 MQGVEIGDKHIEVMVRQMLRKIRVMDPGDTEI-LPGTLMDI--AEFKDRNYDTLVAGGVP 1114 Query: 223 --YRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPV 50 R +LLGIT+ASL T SF+S ASFQET RVL AA+RG+ D L GLKENV++G IIP Sbjct: 1115 ATSRPVLLGITKASLETNSFLSAASFQETTRVLTDAAIRGKKDPLLGLKENVIIGKIIPA 1174 Query: 49 GTGFQKFVHRSPQD 8 GTG ++ + P++ Sbjct: 1175 GTGMARYRNMEPKE 1188
>RPOC_LISMO (Q8YA96) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1201 Score = 129 bits (325), Expect = 6e-30 Identities = 85/244 (34%), Positives = 129/244 (52%), Gaps = 43/244 (17%) Frame = -3 Query: 631 TFKYEKSRSSDITQGLPKVEQIFEARS-------------IDSLSPNLERRIE------- 512 TF DITQGLP++++IFEAR+ + S+ +R+ E Sbjct: 938 TFHTGGVAGDDITQGLPRIQEIFEARNPKGQAIITEVGGEVVSIEEGRDRQQEITIQGTD 997 Query: 511 ---DWNERIPRILGVPWGFLIGAELTIAQSRIS----------------LVNKIQKVYRS 389 +N L V G ++ + + + L+ ++QKVYR Sbjct: 998 DRRSYNIPYTARLRVEEGTIVERGEALTEGSVDPKALIRVRDVLSVQEYLLAEVQKVYRM 1057 Query: 388 QGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYY 221 QGV+I ++H+E+++RQ+ K+RV + G +N+ LPG L+ + A R + Sbjct: 1058 QGVEIGDKHVEVMVRQMLRKIRVMDTGDTNI-LPGTLMDIHTFTEANREAILSGSQPATG 1116 Query: 220 RAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTG 41 R +LLGIT+ASL T SF+S ASFQET RVL AA++G+ D L GLKENV+LG ++P GTG Sbjct: 1117 RPVLLGITKASLETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENVILGKLVPAGTG 1176 Query: 40 FQKF 29 ++ Sbjct: 1177 IGRY 1180
>RPOC_PSESM (Q889X7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1399 Score = 129 bits (325), Expect = 6e-30 Identities = 95/246 (38%), Positives = 131/246 (53%), Gaps = 44/246 (17%) Frame = -3 Query: 646 GDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE--------------RRI-- 515 GD + E S++ DIT GLP+V +FEAR S E RR+ Sbjct: 1118 GDVIARIPQETSKTRDITGGLPRVADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVI 1177 Query: 514 ------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS----------------LVNKI 407 + + E IP R L V G + I+ +VN+I Sbjct: 1178 TPNDGSDPYEELIPKWRHLNVFEGEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEI 1237 Query: 406 QKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRA----ERAGRAL 239 Q VYR QGV+I+++HIE I+RQ+ KV ++E G S+ F+ G+ + L ER G Sbjct: 1238 QDVYRLQGVKINDKHIETILRQMLRKVEIAESGDSS-FIKGDQMELTHVLVENERLGADD 1296 Query: 238 DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGI 59 + +LLGIT+ASL+T+SFIS ASFQET RVL +AA+ G+ D+L+GLKENVV+G + Sbjct: 1297 KFVSKFTRVLLGITKASLSTESFISAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRL 1356 Query: 58 IPVGTG 41 IP GTG Sbjct: 1357 IPAGTG 1362
>RPOC_PHOPR (Q6LLW3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1404 Score = 129 bits (325), Expect = 6e-30 Identities = 98/255 (38%), Positives = 130/255 (50%), Gaps = 43/255 (16%) Frame = -3 Query: 646 GDRLVTFKYEKSRSSDITQGLPKVEQIFEAR---------------SIDSLSPNLERRIE 512 GD L E + DIT GLP+V +FEAR S + R I Sbjct: 1119 GDILSRIPQESGGTRDITGGLPRVADLFEARKPKEPAILAEITGAVSFGKETKGKRRLII 1178 Query: 511 DWNERIP--------RILGVPWGFLIGAELTIAQSRIS----------------LVNKIQ 404 +E P R L V G + IA + +VN++Q Sbjct: 1179 TPSEGQPYEEMIHKWRQLNVFEGEKVECGDVIADGPEAPHDILRLRGVHAVAEYIVNEVQ 1238 Query: 403 KVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALD---- 236 +VYR QGV+I+++HIE IIRQ+ KV + + G S FLPGE + R A R L+ Sbjct: 1239 EVYRLQGVKINDKHIETIIRQMLRKVTIVKAGDSE-FLPGEQVEFSRVNIANRKLEADGK 1297 Query: 235 ESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGII 56 + + + LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV++G +I Sbjct: 1298 DIVTFSRDLLGITKASLATESFISAASFQETTRVLTEAAVSGKRDPLRGLKENVIVGRLI 1357 Query: 55 PVGTGFQKFVHRSPQ 11 P GTGF R Q Sbjct: 1358 PAGTGFSYHQRRQNQ 1372
>RPOC_LISMF (Q724E9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1201 Score = 129 bits (324), Expect = 8e-30 Identities = 85/244 (34%), Positives = 129/244 (52%), Gaps = 43/244 (17%) Frame = -3 Query: 631 TFKYEKSRSSDITQGLPKVEQIFEARS-------------IDSLSPNLERRIE------- 512 TF DITQGLP++++IFEAR+ + S+ +R+ E Sbjct: 938 TFHTGGVAGDDITQGLPRIQEIFEARNPKGQAIITEVGGEVVSIEEGRDRQQEITIQGTD 997 Query: 511 ---DWNERIPRILGVPWGFLIGAELTIAQSRIS----------------LVNKIQKVYRS 389 +N L V G ++ + + + L+ ++QKVYR Sbjct: 998 DRRSYNIPYTARLRVEEGTIVERGEALTEGSVDPKALIRVRDVLSVQEYLLAEVQKVYRM 1057 Query: 388 QGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYY 221 QGV+I ++H+E+++RQ+ K+RV + G +N+ LPG L+ + A R + Sbjct: 1058 QGVEIGDKHVEVMVRQMLRKIRVMDTGDTNI-LPGTLMDIHTFTEANRDAILSGSQPATG 1116 Query: 220 RAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTG 41 R +LLGIT+ASL T SF+S ASFQET RVL AA++G+ D L GLKENV+LG ++P GTG Sbjct: 1117 RPVLLGITKASLETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENVILGKLVPAGTG 1176 Query: 40 FQKF 29 ++ Sbjct: 1177 IGRY 1180
>RPOC_LISIN (P77879) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1201 Score = 129 bits (324), Expect = 8e-30 Identities = 85/244 (34%), Positives = 129/244 (52%), Gaps = 43/244 (17%) Frame = -3 Query: 631 TFKYEKSRSSDITQGLPKVEQIFEARS-------------IDSLSPNLERRIE------- 512 TF DITQGLP++++IFEAR+ + S+ +R+ E Sbjct: 938 TFHTGGVAGDDITQGLPRIQEIFEARNPKGQAIITEVGGEVVSIEEGRDRQQEITIQGTD 997 Query: 511 ---DWNERIPRILGVPWGFLIGAELTIAQSRIS----------------LVNKIQKVYRS 389 +N L V G ++ + + + L+ ++QKVYR Sbjct: 998 DRRSYNIPYTARLRVEEGSIVERGEALTEGSVDPKALIRVRDVLSVQEYLLAEVQKVYRM 1057 Query: 388 QGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYY 221 QGV+I ++H+E+++RQ+ K+RV + G +N+ LPG L+ + A R + Sbjct: 1058 QGVEIGDKHVEVMVRQMLRKIRVMDTGDTNI-LPGTLMDIHTFTEANRDAILSGSQPATG 1116 Query: 220 RAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTG 41 R +LLGIT+ASL T SF+S ASFQET RVL AA++G+ D L GLKENV+LG ++P GTG Sbjct: 1117 RPVLLGITKASLETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENVILGKLVPAGTG 1176 Query: 40 FQKF 29 ++ Sbjct: 1177 IGRY 1180
>RPOC_STAHJ (Q4L3K4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1206 Score = 129 bits (324), Expect = 8e-30 Identities = 89/246 (36%), Positives = 132/246 (53%), Gaps = 45/246 (18%) Frame = -3 Query: 631 TFKYEKSRSSDITQGLPKVEQIFEARSI--DSLSPNLERRIED----------------- 509 TF SDITQGLP++++IFEAR+ ++ +E +ED Sbjct: 942 TFHTGGVAGSDITQGLPRIQEIFEARNPKGQAVITEIEGVVEDIKLAKDRQQEIVVKGAN 1001 Query: 508 --------WNERIPRILGV--------------PWGFLIGAELTIAQSRISLVNKIQKVY 395 R+ +G P FL A L +S L+ ++QKVY Sbjct: 1002 ETRSYLASGTSRLKVEVGQSVERGEVLTEGSIEPKNFLAVAGLNATESY--LLKEVQKVY 1059 Query: 394 RSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES----I 227 R QGV+I ++H+E+++RQ+ KVR+ E G + + LPG L+ + A R + Sbjct: 1060 RMQGVEIDDKHVEVMVRQMLRKVRIIEAGDTKL-LPGSLVDIHSFTDANREAFKERKRPA 1118 Query: 226 YYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVG 47 + +LLGIT+ASL T+SF+S ASFQET RVL AA++G+ D L GLKENV++G +IP G Sbjct: 1119 TAKPVLLGITKASLETESFLSAASFQETTRVLTDAAIKGKRDDLLGLKENVIIGKLIPAG 1178 Query: 46 TGFQKF 29 TG +++ Sbjct: 1179 TGMRRY 1184
>RPOC_BRUSU (Q8G070) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1400 Score = 129 bits (324), Expect = 8e-30 Identities = 91/250 (36%), Positives = 131/250 (52%), Gaps = 48/250 (19%) Frame = -3 Query: 646 GDRLVTFKYEKSRSSDITQGLPKVEQIFEAR---------SIDS---------------L 539 GD + E +++ DIT GLP+V ++FEAR ID + Sbjct: 1112 GDVIARLPMESAKTKDITGGLPRVAELFEARRPKDHAIIAEIDGTVRFGRDYKNKRRIII 1171 Query: 538 SPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQSRIS--------------------L 419 PN + IE IP+ G P+ G + + + L Sbjct: 1172 EPN-DDTIEPVEYLIPK--GKPFHLQDGDVIEKGEYILDGNPAPHDILAIKGVEALASYL 1228 Query: 418 VNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL 239 VN+IQ+VYR QGV I+++HIE+I+RQ+ KV ++E G + ++PG+ + + E L Sbjct: 1229 VNEIQEVYRLQGVLINDKHIEVIVRQMLQKVEITESGDTG-YIPGDHVDRIELEEINERL 1287 Query: 238 DESIYY----RAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVV 71 E +LLGIT+ASL T SFIS ASFQET RVL +AA+ G++D L+GLKENV+ Sbjct: 1288 IEEGKKPGSGNPVLLGITKASLQTPSFISAASFQETTRVLTEAAVAGKMDTLQGLKENVI 1347 Query: 70 LGGIIPVGTG 41 +G +IP GTG Sbjct: 1348 VGRLIPAGTG 1357
>RPOC_BRUME (Q8YHP7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1400 Score = 129 bits (324), Expect = 8e-30 Identities = 91/250 (36%), Positives = 131/250 (52%), Gaps = 48/250 (19%) Frame = -3 Query: 646 GDRLVTFKYEKSRSSDITQGLPKVEQIFEAR---------SIDS---------------L 539 GD + E +++ DIT GLP+V ++FEAR ID + Sbjct: 1112 GDVIARLPMESAKTKDITGGLPRVAELFEARRPKDHAIIAEIDGTVRFGRDYKNKRRIII 1171 Query: 538 SPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQSRIS--------------------L 419 PN + IE IP+ G P+ G + + + L Sbjct: 1172 EPN-DDTIEPVEYLIPK--GKPFHLQDGDVIEKGEYILDGNPAPHDILAIKGVEALASYL 1228 Query: 418 VNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL 239 VN+IQ+VYR QGV I+++HIE+I+RQ+ KV ++E G + ++PG+ + + E L Sbjct: 1229 VNEIQEVYRLQGVLINDKHIEVIVRQMLQKVEITESGDTG-YIPGDHVDRIELEEINERL 1287 Query: 238 DESIYY----RAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVV 71 E +LLGIT+ASL T SFIS ASFQET RVL +AA+ G++D L+GLKENV+ Sbjct: 1288 IEEGKKPGSGNPVLLGITKASLQTPSFISAASFQETTRVLTEAAVAGKMDTLQGLKENVI 1347 Query: 70 LGGIIPVGTG 41 +G +IP GTG Sbjct: 1348 VGRLIPAGTG 1357
>RPOC_BRUAB (Q57CP9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1400 Score = 129 bits (324), Expect = 8e-30 Identities = 91/250 (36%), Positives = 131/250 (52%), Gaps = 48/250 (19%) Frame = -3 Query: 646 GDRLVTFKYEKSRSSDITQGLPKVEQIFEAR---------SIDS---------------L 539 GD + E +++ DIT GLP+V ++FEAR ID + Sbjct: 1112 GDVIARLPMESAKTKDITGGLPRVAELFEARRPKDHAIIAEIDGTVRFGRDYKNKRRIII 1171 Query: 538 SPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQSRIS--------------------L 419 PN + IE IP+ G P+ G + + + L Sbjct: 1172 EPN-DDTIEPVEYLIPK--GKPFHLQDGDVIEKGEYILDGNPAPHDILAIKGVEALASYL 1228 Query: 418 VNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL 239 VN+IQ+VYR QGV I+++HIE+I+RQ+ KV ++E G + ++PG+ + + E L Sbjct: 1229 VNEIQEVYRLQGVLINDKHIEVIVRQMLQKVEITESGDTG-YIPGDHVDRIELEEINERL 1287 Query: 238 DESIYY----RAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVV 71 E +LLGIT+ASL T SFIS ASFQET RVL +AA+ G++D L+GLKENV+ Sbjct: 1288 IEEGKKPGSGNPVLLGITKASLQTPSFISAASFQETTRVLTEAAVAGKMDTLQGLKENVI 1347 Query: 70 LGGIIPVGTG 41 +G +IP GTG Sbjct: 1348 VGRLIPAGTG 1357
>RPOC_STRA5 (Q8E238) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1216 Score = 129 bits (323), Expect = 1e-29 Identities = 91/242 (37%), Positives = 136/242 (56%), Gaps = 44/242 (18%) Frame = -3 Query: 607 SSDITQGLPKVEQIFEARS------IDSLSPNLERRIEDWNERIPRILG----------V 476 ++DITQGLP++++IFEAR+ I + + ED + R ++ V Sbjct: 948 NTDITQGLPRIQEIFEARNPKGEAVITEVKGEVVAIEEDSSTRTKKVFVKGQTGEGEYVV 1007 Query: 475 PWGFLI----------GAELT---IAQSRIS-----------LVNKIQKVYRSQGVQIHN 368 P+ + GA LT I R+ L+ ++QKVYRSQGV+I + Sbjct: 1008 PFTARMKVEVGDEVARGAALTEGSIQPKRLLEVRDTLSVETYLLAEVQKVYRSQGVEIGD 1067 Query: 367 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES----IYYRAILLGI 200 +H+E+++RQ+ KVRV + G +++ LPG L+ + A + + S R +L+GI Sbjct: 1068 KHVEVMVRQMLRKVRVMDPGDTDL-LPGTLMDISDFTDANKDIVISGGIPATSRPVLMGI 1126 Query: 199 TRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHR 20 T+ASL T SF+S ASFQET RVL AA+RG+ D L GLKENV++G IIP GTG ++ + Sbjct: 1127 TKASLETNSFLSAASFQETTRVLTDAAIRGKKDHLLGLKENVIIGKIIPAGTGMARYRNI 1186 Query: 19 SP 14 P Sbjct: 1187 EP 1188
>RPOC_STRA3 (Q8E7J7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1216 Score = 129 bits (323), Expect = 1e-29 Identities = 91/242 (37%), Positives = 136/242 (56%), Gaps = 44/242 (18%) Frame = -3 Query: 607 SSDITQGLPKVEQIFEARS------IDSLSPNLERRIEDWNERIPRILG----------V 476 ++DITQGLP++++IFEAR+ I + + ED + R ++ V Sbjct: 948 NTDITQGLPRIQEIFEARNPKGEAVITEVKGEVVAIEEDSSTRTKKVFVKGQTGEGEYVV 1007 Query: 475 PWGFLI----------GAELT---IAQSRIS-----------LVNKIQKVYRSQGVQIHN 368 P+ + GA LT I R+ L+ ++QKVYRSQGV+I + Sbjct: 1008 PFTARMKVEVGDEVARGAALTEGSIQPKRLLEVRDTLSVETYLLAEVQKVYRSQGVEIGD 1067 Query: 367 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES----IYYRAILLGI 200 +H+E+++RQ+ KVRV + G +++ LPG L+ + A + + S R +L+GI Sbjct: 1068 KHVEVMVRQMLRKVRVMDPGDTDL-LPGTLMDISDFTDANKDIVISGGIPATSRPVLMGI 1126 Query: 199 TRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHR 20 T+ASL T SF+S ASFQET RVL AA+RG+ D L GLKENV++G IIP GTG ++ + Sbjct: 1127 TKASLETNSFLSAASFQETTRVLTDAAIRGKKDHLLGLKENVIIGKIIPAGTGMARYRNI 1186 Query: 19 SP 14 P Sbjct: 1187 EP 1188
>RPOC_STRA1 (Q3K3L1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1216 Score = 129 bits (323), Expect = 1e-29 Identities = 91/242 (37%), Positives = 136/242 (56%), Gaps = 44/242 (18%) Frame = -3 Query: 607 SSDITQGLPKVEQIFEARS------IDSLSPNLERRIEDWNERIPRILG----------V 476 ++DITQGLP++++IFEAR+ I + + ED + R ++ V Sbjct: 948 NTDITQGLPRIQEIFEARNPKGEAVITEVKGEVVAIEEDSSTRTKKVFVKGQTGEGEYVV 1007 Query: 475 PWGFLI----------GAELT---IAQSRIS-----------LVNKIQKVYRSQGVQIHN 368 P+ + GA LT I R+ L+ ++QKVYRSQGV+I + Sbjct: 1008 PFTARMKVEVGDEVARGAALTEGSIQPKRLLEVRDTLSVETYLLAEVQKVYRSQGVEIGD 1067 Query: 367 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES----IYYRAILLGI 200 +H+E+++RQ+ KVRV + G +++ LPG L+ + A + + S R +L+GI Sbjct: 1068 KHVEVMVRQMLRKVRVMDPGDTDL-LPGTLMDISDFTDANKDIVISGGIPATSRPVLMGI 1126 Query: 199 TRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHR 20 T+ASL T SF+S ASFQET RVL AA+RG+ D L GLKENV++G IIP GTG ++ + Sbjct: 1127 TKASLETNSFLSAASFQETTRVLTDAAIRGKKDHLLGLKENVIIGKIIPAGTGMARYRNI 1186 Query: 19 SP 14 P Sbjct: 1187 EP 1188
>RPOC_STAES (Q8CQ83) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 129 bits (323), Expect = 1e-29 Identities = 88/246 (35%), Positives = 131/246 (53%), Gaps = 45/246 (18%) Frame = -3 Query: 631 TFKYEKSRSSDITQGLPKVEQIFEARS-------------IDSLSPNLERRIE------- 512 TF SDITQGLP++++IFEAR+ +D + +R+ E Sbjct: 942 TFHTGGVAGSDITQGLPRIQEIFEARNPKGQAVITEIEGVVDDIKLAKDRQQEIIVKGAN 1001 Query: 511 -------DWNERIPRILGV--------------PWGFLIGAELTIAQSRISLVNKIQKVY 395 R+ +G P +L A L +S L+ ++QKVY Sbjct: 1002 ETRSYLASGTSRLKVEIGQSVERGEVLTEGSIEPKNYLSVAGLNATESY--LLKEVQKVY 1059 Query: 394 RSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESI 227 R QGV+I ++H+E+++RQ+ KVR+ E G + + LPG L+ + A R Sbjct: 1060 RMQGVEIDDKHVEVMVRQMLRKVRIIEAGDTKL-LPGSLVDIHNFTDANRDAFKHRKRPA 1118 Query: 226 YYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVG 47 + +LLGIT+ASL T+SF+S ASFQET RVL AA++G+ D L GLKENV++G +IP G Sbjct: 1119 TAKPVLLGITKASLETESFLSAASFQETTRVLTDAAIKGKRDDLLGLKENVIIGKLIPAG 1178 Query: 46 TGFQKF 29 TG +++ Sbjct: 1179 TGMRRY 1184
>RPOC_STAEQ (Q5HRK9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 129 bits (323), Expect = 1e-29 Identities = 88/246 (35%), Positives = 131/246 (53%), Gaps = 45/246 (18%) Frame = -3 Query: 631 TFKYEKSRSSDITQGLPKVEQIFEARS-------------IDSLSPNLERRIE------- 512 TF SDITQGLP++++IFEAR+ +D + +R+ E Sbjct: 942 TFHTGGVAGSDITQGLPRIQEIFEARNPKGQAVITEIEGVVDDIKLAKDRQQEIIVKGAN 1001 Query: 511 -------DWNERIPRILGV--------------PWGFLIGAELTIAQSRISLVNKIQKVY 395 R+ +G P +L A L +S L+ ++QKVY Sbjct: 1002 ETRSYLASGTSRLKVEIGQSVERGEVLTEGSIEPKNYLSVAGLNATESY--LLKEVQKVY 1059 Query: 394 RSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESI 227 R QGV+I ++H+E+++RQ+ KVR+ E G + + LPG L+ + A R Sbjct: 1060 RMQGVEIDDKHVEVMVRQMLRKVRIIEAGDTKL-LPGSLVDIHNFTDANRDAFKHRKRPA 1118 Query: 226 YYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVG 47 + +LLGIT+ASL T+SF+S ASFQET RVL AA++G+ D L GLKENV++G +IP G Sbjct: 1119 TAKPVLLGITKASLETESFLSAASFQETTRVLTDAAIKGKRDDLLGLKENVIIGKLIPAG 1178 Query: 46 TGFQKF 29 TG +++ Sbjct: 1179 TGMRRY 1184
>RPOC_STAAW (P60286) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 129 bits (323), Expect = 1e-29 Identities = 91/249 (36%), Positives = 134/249 (53%), Gaps = 48/249 (19%) Frame = -3 Query: 631 TFKYEKSRSSDITQGLPKVEQIFEARSI--DSLSPNLERRIED----------------- 509 TF SDITQGLP++++IFEAR+ ++ +E +ED Sbjct: 942 TFHTGGVAGSDITQGLPRIQEIFEARNPKGQAVITEIEGVVEDIKLAKDRQQEIVVKGAN 1001 Query: 508 --------WNERIPRILGVPW--------------GFLIGAELTIAQSRISLVNKIQKVY 395 RI +G P +L A L +S L+ ++QKVY Sbjct: 1002 ETRSYLASGTSRIIVEIGQPVQRGEVLTEGSIEPKNYLSVAGLNATESY--LLKEVQKVY 1059 Query: 394 RSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRA 215 R QGV+I ++H+E+++RQ+ KVR+ E G + + LPG L+ + A R E+ +R Sbjct: 1060 RMQGVEIDDKHVEVMVRQMLRKVRIIEAGDTKL-LPGSLVDIHNFTDANR---EAFKHRK 1115 Query: 214 -------ILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGII 56 +LLGIT+ASL T+SF+S ASFQET RVL AA++G+ D L GLKENV++G +I Sbjct: 1116 RPATAKPVLLGITKASLETESFLSAASFQETTRVLTDAAIKGKRDDLLGLKENVIIGKLI 1175 Query: 55 PVGTGFQKF 29 P GTG +++ Sbjct: 1176 PAGTGMRRY 1184
>RPOC_STAAS (Q6GBU4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 129 bits (323), Expect = 1e-29 Identities = 91/249 (36%), Positives = 134/249 (53%), Gaps = 48/249 (19%) Frame = -3 Query: 631 TFKYEKSRSSDITQGLPKVEQIFEARSI--DSLSPNLERRIED----------------- 509 TF SDITQGLP++++IFEAR+ ++ +E +ED Sbjct: 942 TFHTGGVAGSDITQGLPRIQEIFEARNPKGQAVITEIEGVVEDIKLAKDRQQEIVVKGAN 1001 Query: 508 --------WNERIPRILGVPW--------------GFLIGAELTIAQSRISLVNKIQKVY 395 RI +G P +L A L +S L+ ++QKVY Sbjct: 1002 ETRSYLASGTSRIIVEIGQPVQRGEVLTEGSIEPKNYLSVAGLNATESY--LLKEVQKVY 1059 Query: 394 RSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRA 215 R QGV+I ++H+E+++RQ+ KVR+ E G + + LPG L+ + A R E+ +R Sbjct: 1060 RMQGVEIDDKHVEVMVRQMLRKVRIIEAGDTKL-LPGSLVDIHNFTDANR---EAFKHRK 1115 Query: 214 -------ILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGII 56 +LLGIT+ASL T+SF+S ASFQET RVL AA++G+ D L GLKENV++G +I Sbjct: 1116 RPATAKPVLLGITKASLETESFLSAASFQETTRVLTDAAIKGKRDDLLGLKENVIIGKLI 1175 Query: 55 PVGTGFQKF 29 P GTG +++ Sbjct: 1176 PAGTGMRRY 1184
>RPOC_STAAR (Q6GJC5) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 129 bits (323), Expect = 1e-29 Identities = 91/249 (36%), Positives = 134/249 (53%), Gaps = 48/249 (19%) Frame = -3 Query: 631 TFKYEKSRSSDITQGLPKVEQIFEARSI--DSLSPNLERRIED----------------- 509 TF SDITQGLP++++IFEAR+ ++ +E +ED Sbjct: 942 TFHTGGVAGSDITQGLPRIQEIFEARNPKGQAVITEIEGVVEDIKLAKDRQQEIVVKGAN 1001 Query: 508 --------WNERIPRILGVPW--------------GFLIGAELTIAQSRISLVNKIQKVY 395 RI +G P +L A L +S L+ ++QKVY Sbjct: 1002 ETRSYLASGTSRIIVEIGQPVQRGEVLTEGSIEPKNYLSVAGLNATESY--LLKEVQKVY 1059 Query: 394 RSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRA 215 R QGV+I ++H+E+++RQ+ KVR+ E G + + LPG L+ + A R E+ +R Sbjct: 1060 RMQGVEIDDKHVEVMVRQMLRKVRIIEAGDTKL-LPGSLVDIHNFTDANR---EAFKHRK 1115 Query: 214 -------ILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGII 56 +LLGIT+ASL T+SF+S ASFQET RVL AA++G+ D L GLKENV++G +I Sbjct: 1116 RPATAKPVLLGITKASLETESFLSAASFQETTRVLTDAAIKGKRDDLLGLKENVIIGKLI 1175 Query: 55 PVGTGFQKF 29 P GTG +++ Sbjct: 1176 PAGTGMRRY 1184
>RPOC_STAAN (P60285) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 129 bits (323), Expect = 1e-29 Identities = 91/249 (36%), Positives = 134/249 (53%), Gaps = 48/249 (19%) Frame = -3 Query: 631 TFKYEKSRSSDITQGLPKVEQIFEARSI--DSLSPNLERRIED----------------- 509 TF SDITQGLP++++IFEAR+ ++ +E +ED Sbjct: 942 TFHTGGVAGSDITQGLPRIQEIFEARNPKGQAVITEIEGVVEDIKLAKDRQQEIVVKGAN 1001 Query: 508 --------WNERIPRILGVPW--------------GFLIGAELTIAQSRISLVNKIQKVY 395 RI +G P +L A L +S L+ ++QKVY Sbjct: 1002 ETRSYLASGTSRIIVEIGQPVQRGEVLTEGSIEPKNYLSVAGLNATESY--LLKEVQKVY 1059 Query: 394 RSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRA 215 R QGV+I ++H+E+++RQ+ KVR+ E G + + LPG L+ + A R E+ +R Sbjct: 1060 RMQGVEIDDKHVEVMVRQMLRKVRIIEAGDTKL-LPGSLVDIHNFTDANR---EAFKHRK 1115 Query: 214 -------ILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGII 56 +LLGIT+ASL T+SF+S ASFQET RVL AA++G+ D L GLKENV++G +I Sbjct: 1116 RPATAKPVLLGITKASLETESFLSAASFQETTRVLTDAAIKGKRDDLLGLKENVIIGKLI 1175 Query: 55 PVGTGFQKF 29 P GTG +++ Sbjct: 1176 PAGTGMRRY 1184
>RPOC_STAAM (P60284) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 129 bits (323), Expect = 1e-29 Identities = 91/249 (36%), Positives = 134/249 (53%), Gaps = 48/249 (19%) Frame = -3 Query: 631 TFKYEKSRSSDITQGLPKVEQIFEARSI--DSLSPNLERRIED----------------- 509 TF SDITQGLP++++IFEAR+ ++ +E +ED Sbjct: 942 TFHTGGVAGSDITQGLPRIQEIFEARNPKGQAVITEIEGVVEDIKLAKDRQQEIVVKGAN 1001 Query: 508 --------WNERIPRILGVPW--------------GFLIGAELTIAQSRISLVNKIQKVY 395 RI +G P +L A L +S L+ ++QKVY Sbjct: 1002 ETRSYLASGTSRIIVEIGQPVQRGEVLTEGSIEPKNYLSVAGLNATESY--LLKEVQKVY 1059 Query: 394 RSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRA 215 R QGV+I ++H+E+++RQ+ KVR+ E G + + LPG L+ + A R E+ +R Sbjct: 1060 RMQGVEIDDKHVEVMVRQMLRKVRIIEAGDTKL-LPGSLVDIHNFTDANR---EAFKHRK 1115 Query: 214 -------ILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGII 56 +LLGIT+ASL T+SF+S ASFQET RVL AA++G+ D L GLKENV++G +I Sbjct: 1116 RPATAKPVLLGITKASLETESFLSAASFQETTRVLTDAAIKGKRDDLLGLKENVIIGKLI 1175 Query: 55 PVGTGFQKF 29 P GTG +++ Sbjct: 1176 PAGTGMRRY 1184
>RPOC_STAAC (Q5HID2) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 129 bits (323), Expect = 1e-29 Identities = 91/249 (36%), Positives = 134/249 (53%), Gaps = 48/249 (19%) Frame = -3 Query: 631 TFKYEKSRSSDITQGLPKVEQIFEARSI--DSLSPNLERRIED----------------- 509 TF SDITQGLP++++IFEAR+ ++ +E +ED Sbjct: 942 TFHTGGVAGSDITQGLPRIQEIFEARNPKGQAVITEIEGVVEDIKLAKDRQQEIVVKGAN 1001 Query: 508 --------WNERIPRILGVPW--------------GFLIGAELTIAQSRISLVNKIQKVY 395 RI +G P +L A L +S L+ ++QKVY Sbjct: 1002 ETRSYLASGTSRIIVEIGQPVQRGEVLTEGSIEPKNYLSVAGLNATESY--LLKEVQKVY 1059 Query: 394 RSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRA 215 R QGV+I ++H+E+++RQ+ KVR+ E G + + LPG L+ + A R E+ +R Sbjct: 1060 RMQGVEIDDKHVEVMVRQMLRKVRIIEAGDTKL-LPGSLVDIHNFTDANR---EAFKHRK 1115 Query: 214 -------ILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGII 56 +LLGIT+ASL T+SF+S ASFQET RVL AA++G+ D L GLKENV++G +I Sbjct: 1116 RPATAKPVLLGITKASLETESFLSAASFQETTRVLTDAAIKGKRDDLLGLKENVIIGKLI 1175 Query: 55 PVGTGFQKF 29 P GTG +++ Sbjct: 1176 PAGTGMRRY 1184
>RPOC_NEIG1 (Q5F5R6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1391 Score = 129 bits (323), Expect = 1e-29 Identities = 94/259 (36%), Positives = 137/259 (52%), Gaps = 43/259 (16%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEAR------SIDSLSPNLERRIEDWN 503 G+ + KGD L S++ DIT GLP+V ++FEAR + ++ + E Sbjct: 1116 GQEIGKGDVLARIPQASSKTRDITGGLPRVAELFEARVPKDAGMLAEITGTVSFGKETKG 1175 Query: 502 ER---IPRILGVPWGFLIGAEL--------------TIAQSRIS---------------- 422 ++ I + GV + LI E TI + Sbjct: 1176 KQRLIITDVDGVAYETLISKEKQILVHDGQVVNRGETIVDGAVDPHDILRLQGIEALARY 1235 Query: 421 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG----LLRAER 254 +V ++Q+VYR QGV+I ++HIE+IIRQ+ +V +++ G + F+ GE + + E+ Sbjct: 1236 IVQEVQEVYRLQGVKISDKHIEVIIRQMLRRVNIADAGETG-FITGEQVERGDVMAANEK 1294 Query: 253 AGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 74 A E Y ILLGIT+ASL+T SFIS ASFQET RVL +AA+ G+ D L+GLKENV Sbjct: 1295 ALEEGKEPARYENILLGITKASLSTDSFISAASFQETTRVLTEAAIMGKQDELRGLKENV 1354 Query: 73 VLGGIIPVGTGFQKFVHRS 17 ++G +IP GTG HRS Sbjct: 1355 IVGRLIPAGTGLT--YHRS 1371
>RPOC_OCEIH (Q8ETY7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1203 Score = 128 bits (322), Expect = 1e-29 Identities = 86/243 (35%), Positives = 131/243 (53%), Gaps = 42/243 (17%) Frame = -3 Query: 631 TFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE--------RRIEDWNERI------ 494 TF DITQGLP+++++FEAR+ + E + ++D E + Sbjct: 938 TFHTGGVAGDDITQGLPRIQELFEARNPKGQAVITEIDGTVLEFKEVKDKQEIVVQGEVE 997 Query: 493 PRILGVPWGFLI----------GAELT--------------IAQSRISLVNKIQKVYRSQ 386 R VP+ + G ELT + + L+ ++Q+VYR Q Sbjct: 998 QRSYAVPYNARMKVSIGDTVEAGQELTEGSVDPKELLQIKGVEGVQDYLLKEVQRVYRMQ 1057 Query: 385 GVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYYR 218 GV+I ++H+E+++RQ+ K+RV G + V LPG L+ L + + A + E R Sbjct: 1058 GVEIGDKHVEVMVRQMLRKIRVVSSGDTEV-LPGSLLELHQFKEANHKVLMEEGEPATGR 1116 Query: 217 AILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGF 38 +LLGIT+ASL T SF+S ASFQET RVL AA++G+ D L GLKENV++G ++P GTG Sbjct: 1117 PVLLGITKASLETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGM 1176 Query: 37 QKF 29 ++ Sbjct: 1177 PQY 1179
>RPOC_GEOKA (Q5L404) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1199 Score = 128 bits (322), Expect = 1e-29 Identities = 92/252 (36%), Positives = 136/252 (53%), Gaps = 43/252 (17%) Frame = -3 Query: 631 TFKYEKSRSSDITQGLPKVEQIFEARS---------IDSLSPNLERRIEDWNERI----- 494 TF DITQGLP+V+++FEAR+ ID ++ + ++ E + Sbjct: 938 TFHTGGVAGDDITQGLPRVQELFEARNPKGQAVISEIDGTVISINKTRDNQYEVVVQGEV 997 Query: 493 -PRILGVPWGFLI----------GAELT--------------IAQSRISLVNKIQKVYRS 389 R P+ + G ELT I + L+ ++QKVYR Sbjct: 998 ETRTYVAPYNARLKVEEGQRVERGQELTEGSVDPKQLLRVRDITSVQEYLLREVQKVYRM 1057 Query: 388 QGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLR-AERAGRALDES---IYY 221 QGV+I ++HIE+++RQ+ KVRV + G ++V LPG L+ + + + +AL E Sbjct: 1058 QGVEISDKHIEVMVRQMLRKVRVIDAGDTDV-LPGTLLDVHQFTDVNAKALREGKRPATA 1116 Query: 220 RAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTG 41 R +LLGIT+ASL T SF+S ASFQET RVL AA++G+ D L GLKENV++G ++P GTG Sbjct: 1117 RQVLLGITKASLETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTG 1176 Query: 40 FQKFVHRSPQDK 5 ++ P K Sbjct: 1177 MARYRKVKPAVK 1188
>RPOC_DEIRA (Q9RVW0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1546 Score = 128 bits (322), Expect = 1e-29 Identities = 86/231 (37%), Positives = 129/231 (55%), Gaps = 44/231 (19%) Frame = -3 Query: 601 DITQGLPKVEQIFEARSIDSLSPNLER----RIEDWNER-------------------IP 491 DIT GLP+V ++FEAR + + +R RIE+ ER +P Sbjct: 1268 DITMGLPRVIELFEARKPKTQAVVADRDGVIRIEEEEERYLVRIEADDEQYSSKTATKVP 1327 Query: 490 RILG--VPWGFLIGAELTIAQSRIS----------------LVNKIQKVYRSQGVQIHNR 365 R+L V G + A I + ++ LV ++Q+VYRSQGV++H++ Sbjct: 1328 RVLRMTVKDGERVEAGQPITRGAVNPHDLLMYKDTDAAQRYLVEEVQRVYRSQGVKVHDK 1387 Query: 364 HIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES---IYYRAILLGITR 194 HIE+I+RQ+ V V+ DG L G+ + ++A AL E ++ +LLGIT+ Sbjct: 1388 HIEVIVRQMLRWVEVT-DGGDTTLLEGQTVEHWEVDQANEALAEGQTPASWKPVLLGITK 1446 Query: 193 ASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTG 41 +SL T+S++S ASFQ T VL +A++RG++D L GLKENV+LG +IP GTG Sbjct: 1447 SSLTTKSWLSAASFQHTTHVLTEASMRGQVDDLIGLKENVILGKLIPAGTG 1497
>RPOC_LEIXX (Q6ACX6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1291 Score = 128 bits (321), Expect = 2e-29 Identities = 87/236 (36%), Positives = 131/236 (55%), Gaps = 43/236 (18%) Frame = -3 Query: 607 SSDITQGLPKVEQIFEARSIDSLSPNLE---RRIEDWNERIPRILGVPWG---------- 467 + DITQGLP+V+++FEAR+ SP E R + + ++ +++ P Sbjct: 1006 ADDITQGLPRVQELFEARTPKGASPIAEAAGRIVIEETDKSRKVILTPDNGDEPHVYPVL 1065 Query: 466 ------------FLIGAELTIA--------------QSRISLVNKIQKVYRSQGVQIHNR 365 +G +L + + + LV +Q VYRSQGV IH++ Sbjct: 1066 KRSTLLVEDRQQVELGQQLIVGTVDPKEVLRVKGVREVQKHLVGGVQGVYRSQGVPIHDK 1125 Query: 364 HIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR-ALDE---SIYYRAILLGIT 197 HIE+I+RQ+ KV V + G +++ LPGEL+ R R AL E + R ++GIT Sbjct: 1126 HIEVIVRQMLRKVTVVDHGDTDL-LPGELVDRSRYNEINRGALQEGKKTASARQEVMGIT 1184 Query: 196 RASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKF 29 +ASL T+S++S ASFQET RVL +AA+ G+ D L GLKENV++G +IP GTG ++ Sbjct: 1185 KASLATESWLSAASFQETTRVLTQAAMEGKSDPLIGLKENVIIGKLIPAGTGLSRY 1240
>RPOC_PSEF5 (Q4K527) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1399 Score = 128 bits (321), Expect = 2e-29 Identities = 94/246 (38%), Positives = 130/246 (52%), Gaps = 44/246 (17%) Frame = -3 Query: 646 GDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE--------------RRI-- 515 GD + E S++ DIT GLP+V +FEAR S E RR+ Sbjct: 1118 GDVIARIPQETSKTRDITGGLPRVADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVI 1177 Query: 514 ------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS----------------LVNKI 407 + + E IP R L V G + I+ +VN+I Sbjct: 1178 TPNDGSDPYEELIPKWRHLNVFEGEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEI 1237 Query: 406 QKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRA----ERAGRAL 239 Q VYR QGV+I+++HIE I+RQ+ KV ++E G S+ F+ G+ + L ER Sbjct: 1238 QDVYRLQGVKINDKHIETILRQMLRKVEIAESGDSS-FIKGDQMELTHVLVENERLSTED 1296 Query: 238 DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGI 59 + +LLGIT+ASL+T+SFIS ASFQET RVL +AA+ G+ D+L+GLKENVV+G + Sbjct: 1297 KFVAKFTRVLLGITKASLSTESFISAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRL 1356 Query: 58 IPVGTG 41 IP GTG Sbjct: 1357 IPAGTG 1362
>RPOC_STAS1 (Q49V53) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 128 bits (321), Expect = 2e-29 Identities = 89/246 (36%), Positives = 135/246 (54%), Gaps = 45/246 (18%) Frame = -3 Query: 631 TFKYEKSRSSDITQGLPKVEQIFEARS-------------IDSLSPNLERR----IEDWN 503 TF SDITQGLP++++IFEAR+ +D + +R+ I+ N Sbjct: 942 TFHTGGVAGSDITQGLPRIQEIFEARNPKGQAVITEIEGVVDDIKLAKDRQQEIVIKGAN 1001 Query: 502 E----------RIPRILGV--------------PWGFLIGAELTIAQSRISLVNKIQKVY 395 E R+ +G P +L + L +S L+ ++QKVY Sbjct: 1002 ETKSYLASGTSRLKVEVGQSVERGEVLTEGSIEPKNYLSVSGLNATESY--LLKEVQKVY 1059 Query: 394 RSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES----I 227 R QGV+I ++H+E+++RQ+ KVR+ E G + + LPG L+ + A R + Sbjct: 1060 RMQGVEIDDKHVEVMVRQMLRKVRIIEAGDTKL-LPGSLVDIHNFTDANREAFKERKRPA 1118 Query: 226 YYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVG 47 + +LLGIT+ASL T+SF+S ASFQET RVL AA++G+ D L GLKENV++G +IP G Sbjct: 1119 TAKPVLLGITKASLETESFLSAASFQETTRVLTDAAIKGKRDNLLGLKENVIIGKLIPAG 1178 Query: 46 TGFQKF 29 TG +++ Sbjct: 1179 TGMRRY 1184
>RPOC_VIBVY (Q7MGS0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1400 Score = 128 bits (321), Expect = 2e-29 Identities = 94/246 (38%), Positives = 128/246 (52%), Gaps = 43/246 (17%) Frame = -3 Query: 646 GDRLVTFKYEKSRSSDITQGLPKVEQIFEAR---------------SIDSLSPNLERRI- 515 GD L + + DIT GLP+V +FEAR S + R I Sbjct: 1118 GDTLARIPQKSGGNKDITGGLPRVADLFEARKPKEPAILAEYSGTVSFGKETKGKRRLII 1177 Query: 514 -----EDWNERIP--RILGVPWGFLIGAELTIAQSRIS----------------LVNKIQ 404 E + E IP R L V G + IA + + N++Q Sbjct: 1178 TREGGETYEEMIPKHRQLNVFEGERVERGDVIADGPEAPHDILRLRGIHAVTQYIANEVQ 1237 Query: 403 KVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALD---- 236 +VYR QGV+I+++HIE I+RQ+ K ++ G S FLPGE + + + A R L+ Sbjct: 1238 EVYRLQGVKINDKHIETIVRQMLRKCTITHAGDSE-FLPGETVEYSQVKIANRNLEAEGK 1296 Query: 235 ESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGII 56 E + LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV++G +I Sbjct: 1297 EPARFERELLGITKASLATESFISAASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLI 1356 Query: 55 PVGTGF 38 P GTGF Sbjct: 1357 PAGTGF 1362
>RPOC_VIBVU (Q8DD19) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1400 Score = 128 bits (321), Expect = 2e-29 Identities = 94/246 (38%), Positives = 128/246 (52%), Gaps = 43/246 (17%) Frame = -3 Query: 646 GDRLVTFKYEKSRSSDITQGLPKVEQIFEAR---------------SIDSLSPNLERRI- 515 GD L + + DIT GLP+V +FEAR S + R I Sbjct: 1118 GDTLARIPQKSGGNKDITGGLPRVADLFEARKPKEPAILAEYSGTVSFGKETKGKRRLII 1177 Query: 514 -----EDWNERIP--RILGVPWGFLIGAELTIAQSRIS----------------LVNKIQ 404 E + E IP R L V G + IA + + N++Q Sbjct: 1178 TREGGETYEEMIPKHRQLNVFEGERVERGDVIADGPEAPHDILRLRGIHAVTQYIANEVQ 1237 Query: 403 KVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALD---- 236 +VYR QGV+I+++HIE I+RQ+ K ++ G S FLPGE + + + A R L+ Sbjct: 1238 EVYRLQGVKINDKHIETIVRQMLRKCTITHAGDSE-FLPGETVEYSQVKIANRNLEAEGK 1296 Query: 235 ESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGII 56 E + LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV++G +I Sbjct: 1297 EPARFERELLGITKASLATESFISAASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLI 1356 Query: 55 PVGTGF 38 P GTGF Sbjct: 1357 PAGTGF 1362
>RPOC_NEIMB (Q9K1J1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1391 Score = 128 bits (321), Expect = 2e-29 Identities = 92/259 (35%), Positives = 137/259 (52%), Gaps = 43/259 (16%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEAR------SIDSLSPNLERRIEDWN 503 G+ + KGD L S++ DIT GLP+V ++FEAR + ++ + E Sbjct: 1116 GQEIGKGDVLARIPQASSKTRDITGGLPRVAELFEARVPKDAGMLAEITGTVSFGKETKG 1175 Query: 502 ER---IPRILGVPWGFLIGAEL--------------TIAQSRIS---------------- 422 ++ + + GV + LI E TI + Sbjct: 1176 KQRLIVTDVDGVAYETLISKEKQILVHDGQVVNRGETIVDGAVDPHDILRLQGIEALARY 1235 Query: 421 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG----LLRAER 254 +V ++Q+VYR QGV+I ++HIE+IIRQ+ +V +++ G + F+ GE + + E+ Sbjct: 1236 IVQEVQEVYRLQGVKISDKHIEVIIRQMLRRVNIADAGETG-FITGEQVERGDVMAANEK 1294 Query: 253 AGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 74 A E Y +LLGIT+ASL+T SFIS ASFQET RVL +AA+ G+ D L+GLKENV Sbjct: 1295 ALEEGKEPARYENVLLGITKASLSTDSFISAASFQETTRVLTEAAIMGKQDELRGLKENV 1354 Query: 73 VLGGIIPVGTGFQKFVHRS 17 ++G +IP GTG HRS Sbjct: 1355 IVGRLIPAGTGLT--YHRS 1371
>RPOC_NEIMA (Q9JX03) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1391 Score = 128 bits (321), Expect = 2e-29 Identities = 92/259 (35%), Positives = 137/259 (52%), Gaps = 43/259 (16%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEAR------SIDSLSPNLERRIEDWN 503 G+ + KGD L S++ DIT GLP+V ++FEAR + ++ + E Sbjct: 1116 GQEIGKGDVLARIPQASSKTRDITGGLPRVAELFEARVPKDAGMLAEITGTVSFGKETKG 1175 Query: 502 ER---IPRILGVPWGFLIGAEL--------------TIAQSRIS---------------- 422 ++ + + GV + LI E TI + Sbjct: 1176 KQRLIVTDVDGVAYETLISKEKQILVHDGQVVNRGETIVDGAVDPHDILRLQGIEALARY 1235 Query: 421 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG----LLRAER 254 +V ++Q+VYR QGV+I ++HIE+IIRQ+ +V +++ G + F+ GE + + E+ Sbjct: 1236 IVQEVQEVYRLQGVKISDKHIEVIIRQMLRRVNIADAGETG-FITGEQVERGDVMAANEK 1294 Query: 253 AGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 74 A E Y +LLGIT+ASL+T SFIS ASFQET RVL +AA+ G+ D L+GLKENV Sbjct: 1295 ALEEGKEPARYENVLLGITKASLSTDSFISAASFQETTRVLTEAAIMGKQDELRGLKENV 1354 Query: 73 VLGGIIPVGTGFQKFVHRS 17 ++G +IP GTG HRS Sbjct: 1355 IVGRLIPAGTGLT--YHRS 1371
>RPOC_HAEDU (Q7VKL8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1420 Score = 128 bits (321), Expect = 2e-29 Identities = 94/246 (38%), Positives = 133/246 (54%), Gaps = 43/246 (17%) Frame = -3 Query: 646 GDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE--------------RRI-- 515 G+ L E + DIT GLP+V +FEAR + E RR+ Sbjct: 1119 GEALARIPQESVGTKDITGGLPRVADLFEARKPKEAAILAEISGIVSFGKETKGKRRLVI 1178 Query: 514 -----EDWNERIP--RILGVPWGFLI--------GAELTIAQSRIS--------LVNKIQ 404 E + E IP R L V G ++ GAE R+ +VN++Q Sbjct: 1179 TPAEGEAFEEMIPKWRQLNVFEGEMVQRGDIISDGAETPHDILRLRGVHAVTDYIVNEVQ 1238 Query: 403 KVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES-- 230 +VYR QGV+I+++HIE+I+RQ+ K ++ + + FL GE + + R + A R E Sbjct: 1239 EVYRLQGVKINDKHIEVIVRQMLRKAVIT-NAYDSEFLEGEQVEVARVKIANRKRAEEGK 1297 Query: 229 --IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGII 56 + + LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV++G +I Sbjct: 1298 PLVEFERELLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLI 1357 Query: 55 PVGTGF 38 P GTGF Sbjct: 1358 PAGTGF 1363
>RPOC_BARHE (Q6G3X4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1402 Score = 127 bits (320), Expect = 2e-29 Identities = 91/254 (35%), Positives = 129/254 (50%), Gaps = 46/254 (18%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDS------------------- 542 G + GD + E +++ DIT GLP+V ++FEAR Sbjct: 1107 GSHVKAGDVIARLPMESAKTKDITGGLPRVAELFEARRPKDHAIIAEVSGTIRFGRGYKN 1166 Query: 541 -----LSPNLERRIEDWNERIPR------------------ILGVPWGFLIGAELTIAQS 431 + PN + +E IP+ + G P I A + Sbjct: 1167 KRRIIIEPN-DETLEPVEYLIPKGKLFHFQEGDQIEKGDYILDGNPAPHDILAIKGVEAL 1225 Query: 430 RISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 251 LVN+IQ+VYR QGV I+++HIE+I+RQ+ KV ++E G S ++PG+ + + + Sbjct: 1226 ASYLVNEIQEVYRLQGVLINDKHIEVIVRQMLQKVEITESGDSG-YIPGDHVDRIELDEI 1284 Query: 250 GRAL----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLK 83 L ILLGIT+ASL T SFIS ASFQET RVL +AA+ G+ID L+GLK Sbjct: 1285 NDNLLAEGKRPASGNPILLGITKASLQTPSFISAASFQETTRVLTEAAVSGKIDTLQGLK 1344 Query: 82 ENVVLGGIIPVGTG 41 ENV++G +IP GTG Sbjct: 1345 ENVIVGRLIPAGTG 1358
>RPOC_BIFLO (Q8G515) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1345 Score = 127 bits (320), Expect = 2e-29 Identities = 89/245 (36%), Positives = 134/245 (54%), Gaps = 52/245 (21%) Frame = -3 Query: 607 SSDITQGLPKVEQIFEARSIDSLSPNLE-------------RRI------------EDW- 506 +SDITQGLP+V ++FEAR+ +P E R+I ED Sbjct: 1029 ASDITQGLPRVTELFEARTPKGEAPITEFAGSIKIVENDRGRQIILTPDADSGAPKEDGV 1088 Query: 505 --------NERIPRILGVPWGFLIGAEL-----------TIAQSR---ISLVNKIQKVYR 392 ++R+P + +G +L TI R +++V ++ VYR Sbjct: 1089 IKPITYQVSKRVPLKVADGDHIKVGTQLVEGSVDPKKILTILGKRAAQVNIVEEVHTVYR 1148 Query: 391 SQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES----IY 224 SQGV IH++HIE+I+ Q+T +V + + G +++ LPGEL+ R R + ++ Sbjct: 1149 SQGVDIHDKHIEVIVHQMTRRVTIIDSGDTDL-LPGELVDNARFREINRNIVKNGGRPAV 1207 Query: 223 YRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGT 44 R L+GIT+ASL T S++S ASFQET RVL +AAL ++D LKGLKENV++G +IP GT Sbjct: 1208 GRPALMGITKASLATDSWLSAASFQETTRVLTEAALSEKVDDLKGLKENVIIGKLIPAGT 1267 Query: 43 GFQKF 29 G ++ Sbjct: 1268 GLARY 1272
>RPOC_PSEU2 (Q4ZMN8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1399 Score = 127 bits (320), Expect = 2e-29 Identities = 94/246 (38%), Positives = 130/246 (52%), Gaps = 44/246 (17%) Frame = -3 Query: 646 GDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE--------------RRI-- 515 GD + E S++ DIT GLP+V +FEAR S E RR+ Sbjct: 1118 GDVIARIPQETSKTRDITGGLPRVADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVI 1177 Query: 514 ------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS----------------LVNKI 407 + + E IP R L V G + I+ +VN+I Sbjct: 1178 TPNDGSDPYEELIPKWRHLNVFEGEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEI 1237 Query: 406 QKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRA----ERAGRAL 239 Q VYR QGV+I+++HIE I+RQ+ KV ++E G S+ F+ G+ + L ER Sbjct: 1238 QDVYRLQGVKINDKHIETILRQMLRKVEIAESGDSS-FIKGDQMELTHVLVENERLSTED 1296 Query: 238 DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGI 59 + +LLGIT+ASL+T+SFIS ASFQET RVL +AA+ G+ D+L+GLKENVV+G + Sbjct: 1297 KFVSKFTRVLLGITKASLSTESFISAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRL 1356 Query: 58 IPVGTG 41 IP GTG Sbjct: 1357 IPAGTG 1362
>RPOC_PSE14 (Q48D30) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1399 Score = 127 bits (320), Expect = 2e-29 Identities = 94/246 (38%), Positives = 130/246 (52%), Gaps = 44/246 (17%) Frame = -3 Query: 646 GDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE--------------RRI-- 515 GD + E S++ DIT GLP+V +FEAR S E RR+ Sbjct: 1118 GDVIARIPQETSKTRDITGGLPRVADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVI 1177 Query: 514 ------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS----------------LVNKI 407 + + E IP R L V G + I+ +VN+I Sbjct: 1178 TPNDGSDPYEELIPKWRHLNVFEGEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEI 1237 Query: 406 QKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRA----ERAGRAL 239 Q VYR QGV+I+++HIE I+RQ+ KV ++E G S+ F+ G+ + L ER Sbjct: 1238 QDVYRLQGVKINDKHIETILRQMLRKVEIAESGDSS-FIKGDQMELTHVLVENERLSTED 1296 Query: 238 DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGI 59 + +LLGIT+ASL+T+SFIS ASFQET RVL +AA+ G+ D+L+GLKENVV+G + Sbjct: 1297 KFVSKFTRVLLGITKASLSTESFISAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRL 1356 Query: 58 IPVGTG 41 IP GTG Sbjct: 1357 IPAGTG 1362
>RPOC_BUCAP (P41185) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1413 Score = 127 bits (320), Expect = 2e-29 Identities = 95/247 (38%), Positives = 131/247 (53%), Gaps = 44/247 (17%) Frame = -3 Query: 646 GDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE--------------RRI-- 515 GD L E + DIT GLP+V +FEAR L+ E RR+ Sbjct: 1118 GDTLARVPQESGGTKDITGGLPRVADLFEARRPKELAILAEISGIISFGKETKGKRRLII 1177 Query: 514 ------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS----------------LVNKI 407 + + E IP R L V G + I+ S +VN++ Sbjct: 1178 TPVDGSDAYEEMIPKWRQLNVFEGERVERGDVISDGPESPHDILRLRGVQAVTKYIVNEV 1237 Query: 406 QKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESI 227 Q+VYR QGV+I+++HIE+IIRQ+ K V + G S FL GE + R + + R L++ Sbjct: 1238 QEVYRLQGVKINDKHIEVIIRQMLRKATVIKSGNSE-FLDGEQVEFSRIKISNRILNKQS 1296 Query: 226 YYRAI----LLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGI 59 A LLGIT+ASL T+SFIS ASFQET RVL ++A+ G+ D L+GLKENV++G + Sbjct: 1297 KIPATFSRDLLGITKASLATESFISAASFQETTRVLTESAVAGKKDELRGLKENVIVGRL 1356 Query: 58 IPVGTGF 38 IP GTG+ Sbjct: 1357 IPAGTGY 1363
>RPOC_VIBPA (Q87KQ5) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1400 Score = 127 bits (320), Expect = 2e-29 Identities = 95/246 (38%), Positives = 129/246 (52%), Gaps = 43/246 (17%) Frame = -3 Query: 646 GDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE--------------RRI-- 515 GD L + + DIT GLP+V +FEAR + E RR+ Sbjct: 1118 GDTLARIPQKSGGNKDITGGLPRVADLFEARKPKEPAILAEHTGTVSFGKETKGKRRLVI 1177 Query: 514 -----EDWNERIP--RILGVPWGFLIGAELTIAQSRIS----------------LVNKIQ 404 E + E IP R L V G + IA S + N++Q Sbjct: 1178 TRDSGEVYEEMIPKHRQLNVFEGERVERGDVIADGPESPHDILRLRGVHAVTQYIANEVQ 1237 Query: 403 KVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALD---- 236 +VYR QGV+I+++HIE I+RQ+ K ++ G S FLPGE + + + A R L+ Sbjct: 1238 EVYRLQGVKINDKHIETIVRQMLRKCTITHAGDSE-FLPGEQVEYSQVKIANRNLEAEGK 1296 Query: 235 ESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGII 56 E + LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV++G +I Sbjct: 1297 EPARFERELLGITKASLATESFISAASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLI 1356 Query: 55 PVGTGF 38 P GTGF Sbjct: 1357 PAGTGF 1362
>RPOC_SHISS (Q3YUZ6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 127 bits (320), Expect = 2e-29 Identities = 97/253 (38%), Positives = 133/253 (52%), Gaps = 44/253 (17%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEAR------------SIDSLSPNLE- 524 G + GD L E + DIT GLP+V +FEAR I S + Sbjct: 1112 GVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKG 1171 Query: 523 -RRI--------EDWNERIP--RILGVPWGFLI--------GAELTIAQSRIS------- 422 RR+ + + E IP R L V G + G E R+ Sbjct: 1172 KRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTR 1231 Query: 421 -LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR 245 +VN++Q VYR QGV+I+++HIE+I+RQ+ K + G S+ FL GE + R + A R Sbjct: 1232 YIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD-FLEGEQVEYSRVKIANR 1290 Query: 244 ALDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKEN 77 L+ + Y LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKEN Sbjct: 1291 ELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKEN 1350 Query: 76 VVLGGIIPVGTGF 38 V++G +IP GTG+ Sbjct: 1351 VIVGRLIPAGTGY 1363
>RPOC_SHIFL (P0A8T9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 127 bits (320), Expect = 2e-29 Identities = 97/253 (38%), Positives = 133/253 (52%), Gaps = 44/253 (17%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEAR------------SIDSLSPNLE- 524 G + GD L E + DIT GLP+V +FEAR I S + Sbjct: 1112 GVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKG 1171 Query: 523 -RRI--------EDWNERIP--RILGVPWGFLI--------GAELTIAQSRIS------- 422 RR+ + + E IP R L V G + G E R+ Sbjct: 1172 KRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTR 1231 Query: 421 -LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR 245 +VN++Q VYR QGV+I+++HIE+I+RQ+ K + G S+ FL GE + R + A R Sbjct: 1232 YIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD-FLEGEQVEYSRVKIANR 1290 Query: 244 ALDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKEN 77 L+ + Y LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKEN Sbjct: 1291 ELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKEN 1350 Query: 76 VVLGGIIPVGTGF 38 V++G +IP GTG+ Sbjct: 1351 VIVGRLIPAGTGY 1363
>RPOC_SHIDS (Q32AG0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 127 bits (320), Expect = 2e-29 Identities = 97/253 (38%), Positives = 133/253 (52%), Gaps = 44/253 (17%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEAR------------SIDSLSPNLE- 524 G + GD L E + DIT GLP+V +FEAR I S + Sbjct: 1112 GVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKG 1171 Query: 523 -RRI--------EDWNERIP--RILGVPWGFLI--------GAELTIAQSRIS------- 422 RR+ + + E IP R L V G + G E R+ Sbjct: 1172 KRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTR 1231 Query: 421 -LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR 245 +VN++Q VYR QGV+I+++HIE+I+RQ+ K + G S+ FL GE + R + A R Sbjct: 1232 YIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD-FLEGEQVEYSRVKIANR 1290 Query: 244 ALDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKEN 77 L+ + Y LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKEN Sbjct: 1291 ELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKEN 1350 Query: 76 VVLGGIIPVGTGF 38 V++G +IP GTG+ Sbjct: 1351 VIVGRLIPAGTGY 1363
>RPOC_SHIBS (Q31U09) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 127 bits (320), Expect = 2e-29 Identities = 97/253 (38%), Positives = 133/253 (52%), Gaps = 44/253 (17%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEAR------------SIDSLSPNLE- 524 G + GD L E + DIT GLP+V +FEAR I S + Sbjct: 1112 GVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKG 1171 Query: 523 -RRI--------EDWNERIP--RILGVPWGFLI--------GAELTIAQSRIS------- 422 RR+ + + E IP R L V G + G E R+ Sbjct: 1172 KRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTR 1231 Query: 421 -LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR 245 +VN++Q VYR QGV+I+++HIE+I+RQ+ K + G S+ FL GE + R + A R Sbjct: 1232 YIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD-FLEGEQVEYSRVKIANR 1290 Query: 244 ALDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKEN 77 L+ + Y LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKEN Sbjct: 1291 ELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKEN 1350 Query: 76 VVLGGIIPVGTGF 38 V++G +IP GTG+ Sbjct: 1351 VIVGRLIPAGTGY 1363
>RPOC_ECOLI (P0A8T7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 127 bits (320), Expect = 2e-29 Identities = 97/253 (38%), Positives = 133/253 (52%), Gaps = 44/253 (17%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEAR------------SIDSLSPNLE- 524 G + GD L E + DIT GLP+V +FEAR I S + Sbjct: 1112 GVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKG 1171 Query: 523 -RRI--------EDWNERIP--RILGVPWGFLI--------GAELTIAQSRIS------- 422 RR+ + + E IP R L V G + G E R+ Sbjct: 1172 KRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTR 1231 Query: 421 -LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR 245 +VN++Q VYR QGV+I+++HIE+I+RQ+ K + G S+ FL GE + R + A R Sbjct: 1232 YIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD-FLEGEQVEYSRVKIANR 1290 Query: 244 ALDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKEN 77 L+ + Y LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKEN Sbjct: 1291 ELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKEN 1350 Query: 76 VVLGGIIPVGTGF 38 V++G +IP GTG+ Sbjct: 1351 VIVGRLIPAGTGY 1363
>RPOC_ECOL6 (Q8FB83) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 127 bits (320), Expect = 2e-29 Identities = 97/253 (38%), Positives = 133/253 (52%), Gaps = 44/253 (17%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEAR------------SIDSLSPNLE- 524 G + GD L E + DIT GLP+V +FEAR I S + Sbjct: 1112 GVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKG 1171 Query: 523 -RRI--------EDWNERIP--RILGVPWGFLI--------GAELTIAQSRIS------- 422 RR+ + + E IP R L V G + G E R+ Sbjct: 1172 KRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTR 1231 Query: 421 -LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR 245 +VN++Q VYR QGV+I+++HIE+I+RQ+ K + G S+ FL GE + R + A R Sbjct: 1232 YIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD-FLEGEQVEYSRVKIANR 1290 Query: 244 ALDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKEN 77 L+ + Y LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKEN Sbjct: 1291 ELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKEN 1350 Query: 76 VVLGGIIPVGTGF 38 V++G +IP GTG+ Sbjct: 1351 VIVGRLIPAGTGY 1363
>RPOC_ECO57 (P0A8T8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 127 bits (320), Expect = 2e-29 Identities = 97/253 (38%), Positives = 133/253 (52%), Gaps = 44/253 (17%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEAR------------SIDSLSPNLE- 524 G + GD L E + DIT GLP+V +FEAR I S + Sbjct: 1112 GVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKG 1171 Query: 523 -RRI--------EDWNERIP--RILGVPWGFLI--------GAELTIAQSRIS------- 422 RR+ + + E IP R L V G + G E R+ Sbjct: 1172 KRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTR 1231 Query: 421 -LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR 245 +VN++Q VYR QGV+I+++HIE+I+RQ+ K + G S+ FL GE + R + A R Sbjct: 1232 YIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD-FLEGEQVEYSRVKIANR 1290 Query: 244 ALDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKEN 77 L+ + Y LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKEN Sbjct: 1291 ELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKEN 1350 Query: 76 VVLGGIIPVGTGF 38 V++G +IP GTG+ Sbjct: 1351 VIVGRLIPAGTGY 1363
>RPOC_ANAMM (Q5PBG3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1415 Score = 127 bits (319), Expect = 3e-29 Identities = 90/255 (35%), Positives = 129/255 (50%), Gaps = 46/255 (18%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEA------------------------ 557 G+ ++ GD + E ++ DIT GLP+V ++FEA Sbjct: 1101 GQKVHAGDVITRIPRESIKTRDITGGLPRVIELFEARRPKEHAIVSDVDGYVEFGKDYYR 1160 Query: 556 -------RSIDSLSPNLERRIEDWNERIPR-----------ILGVPWGFLIGAELTIAQS 431 R +D P +E + I + G P I L Sbjct: 1161 SKRRIFIRPVDKSLPAVEYLVPKGKHTIVNEGDFVHKGDLLMDGDPDQHDILRVLGAEAL 1220 Query: 430 RISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 251 ++++IQ+VYR QGV+I N+HIE+I+RQ+ KV +++ G ++L GE G R Sbjct: 1221 ASYMISEIQQVYRLQGVRIDNKHIEVILRQMLQKVEITDPG-DTMYLVGEHAGREEVMRL 1279 Query: 250 GRALDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLK 83 R L+E+ + Y IL GIT+ASL+T SFIS ASFQET +VL +AA G+ D L GLK Sbjct: 1280 NRKLEEAGKKPVAYVPILQGITKASLDTNSFISAASFQETTKVLTEAAFSGKEDPLYGLK 1339 Query: 82 ENVVLGGIIPVGTGF 38 ENV++G +IP GTGF Sbjct: 1340 ENVIVGRLIPAGTGF 1354
>RPOC_STRR6 (Q8DNF1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1225 Score = 127 bits (319), Expect = 3e-29 Identities = 90/246 (36%), Positives = 133/246 (54%), Gaps = 44/246 (17%) Frame = -3 Query: 607 SSDITQGLPKVEQIFEARS------IDSLSPNLERRIEDWNERIPRILG----------V 476 ++DITQGLP+V++IFEAR+ I + + ED + R ++ V Sbjct: 947 NTDITQGLPRVQEIFEARNPKGEAVITEVKGQVTAIEEDASTRTKKVFVKGETGEGEYVV 1006 Query: 475 PWGFLI----------GAELT--------------IAQSRISLVNKIQKVYRSQGVQIHN 368 P+ + GA LT + L+ ++QKVYRSQGV+I + Sbjct: 1007 PFTARMRVEVGGQVARGAALTEGSIQPKRLLAVRDVLSVETYLLGEVQKVYRSQGVEIGD 1066 Query: 367 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR----ALDESIYYRAILLGI 200 +HIE+++RQ+ KVRV + G +++ + G L+ + A + A R +L+GI Sbjct: 1067 KHIEVMVRQMIRKVRVMDPGDTDLLM-GTLMDINDFTDANKDVLIAGGVPATGRPVLMGI 1125 Query: 199 TRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHR 20 T+ASL T SF+S ASFQET RVL AA+RG+ D L GLKENV++G IIP GTG ++ + Sbjct: 1126 TKASLETNSFLSAASFQETTRVLTDAAIRGKKDHLLGLKENVIIGKIIPAGTGMARYRNL 1185 Query: 19 SPQDKN 2 P N Sbjct: 1186 EPHAVN 1191
>RPOC_STRPN (Q97NQ8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1225 Score = 127 bits (319), Expect = 3e-29 Identities = 90/246 (36%), Positives = 133/246 (54%), Gaps = 44/246 (17%) Frame = -3 Query: 607 SSDITQGLPKVEQIFEARS------IDSLSPNLERRIEDWNERIPRILG----------V 476 ++DITQGLP+V++IFEAR+ I + + ED + R ++ V Sbjct: 947 NTDITQGLPRVQEIFEARNPKGEAVITEVKGQVTAIEEDASTRTKKVFVKGETGEGEYVV 1006 Query: 475 PWGFLI----------GAELT--------------IAQSRISLVNKIQKVYRSQGVQIHN 368 P+ + GA LT + L+ ++QKVYRSQGV+I + Sbjct: 1007 PFTARMRVEVGGQVARGAALTEGSIQPKRLLAVRDVLSVETYLLGEVQKVYRSQGVEIGD 1066 Query: 367 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR----ALDESIYYRAILLGI 200 +HIE+++RQ+ KVRV + G +++ + G L+ + A + A R +L+GI Sbjct: 1067 KHIEVMVRQMIRKVRVMDPGDTDLLM-GTLMDINDFTDANKDVLIAGGVPATGRPVLMGI 1125 Query: 199 TRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHR 20 T+ASL T SF+S ASFQET RVL AA+RG+ D L GLKENV++G IIP GTG ++ + Sbjct: 1126 TKASLETNSFLSAASFQETTRVLTDAAIRGKKDHLLGLKENVIIGKIIPAGTGMARYRNL 1185 Query: 19 SPQDKN 2 P N Sbjct: 1186 EPHAVN 1191
>RPOC_BARQU (Q6FZM0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1402 Score = 127 bits (319), Expect = 3e-29 Identities = 90/248 (36%), Positives = 127/248 (51%), Gaps = 46/248 (18%) Frame = -3 Query: 646 GDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDS------------------------L 539 GD + E +++ DIT GLP+V ++FEAR + Sbjct: 1113 GDVIARLPMESAKTKDITGGLPRVAELFEARRPKDHAIIAEVSGTIQFGRGYKNKRRIII 1172 Query: 538 SPNLERRIEDWNERIPR------------------ILGVPWGFLIGAELTIAQSRISLVN 413 PN + +E IP+ + G P I A + LVN Sbjct: 1173 EPN-DETLEPVEYLIPKGKLFHFQEGDQIEKGDYILDGNPAPHDILAIKGVEALASYLVN 1231 Query: 412 KIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL-- 239 +IQ+VYR QGV I+++HIE+I+RQ+ KV ++E G S ++PG+ + + + L Sbjct: 1232 EIQEVYRLQGVLINDKHIEVIVRQMLQKVEITESGDSG-YIPGDHVDRIELDEINDNLIA 1290 Query: 238 --DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLG 65 ILLGIT+ASL T SFIS ASFQET RVL +AA+ G+ID L+GLKENV++G Sbjct: 1291 EGKRPASGNPILLGITKASLQTPSFISAASFQETTRVLTEAAVSGKIDTLQGLKENVIVG 1350 Query: 64 GIIPVGTG 41 +IP GTG Sbjct: 1351 RLIPAGTG 1358
>RPOC_STRT2 (Q5M2F6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1212 Score = 127 bits (319), Expect = 3e-29 Identities = 89/242 (36%), Positives = 134/242 (55%), Gaps = 44/242 (18%) Frame = -3 Query: 607 SSDITQGLPKVEQIFEARS------IDSLSPNLERRIEDWNERIPRILG----------V 476 ++DITQGLP++++IFEAR+ I + + ED R ++ V Sbjct: 948 NTDITQGLPRIQEIFEARNPKGEAVITEVKGTVIEIEEDAATRTKKVFVQGKTGMGEYVV 1007 Query: 475 PWGFLIGAEL-------------TIAQSRIS-----------LVNKIQKVYRSQGVQIHN 368 P+ + E+ +I R+ L+ ++QKVYRSQGV+I + Sbjct: 1008 PFTARMKVEVGDEVHRGEALTEGSIQPKRLLEVRDTLSVETYLLAEVQKVYRSQGVEIGD 1067 Query: 367 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES----IYYRAILLGI 200 +H+E+++RQ+ KVRV + G +++ LPG L+ + A + + S R +LLGI Sbjct: 1068 KHVEVMVRQMLRKVRVMDPGDTDL-LPGTLMDISDFTDANKDIVISGGVPATSRPVLLGI 1126 Query: 199 TRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHR 20 T+ASL T SF+S ASFQET RVL AA+RG+ D L GLKENV++G IIP GTG ++ + Sbjct: 1127 TKASLETNSFLSAASFQETTRVLTDAAIRGKKDHLIGLKENVIIGKIIPAGTGMARYRNI 1186 Query: 19 SP 14 P Sbjct: 1187 EP 1188
>RPOC_STRT1 (Q5LXV4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1212 Score = 127 bits (319), Expect = 3e-29 Identities = 89/242 (36%), Positives = 134/242 (55%), Gaps = 44/242 (18%) Frame = -3 Query: 607 SSDITQGLPKVEQIFEARS------IDSLSPNLERRIEDWNERIPRILG----------V 476 ++DITQGLP++++IFEAR+ I + + ED R ++ V Sbjct: 948 NTDITQGLPRIQEIFEARNPKGEAVITEVKGTVIEIEEDAATRTKKVFVQGKTGMGEYVV 1007 Query: 475 PWGFLIGAEL-------------TIAQSRIS-----------LVNKIQKVYRSQGVQIHN 368 P+ + E+ +I R+ L+ ++QKVYRSQGV+I + Sbjct: 1008 PFTARMKVEVGDEVHRGEALTEGSIQPKRLLEVRDTLSVETYLLAEVQKVYRSQGVEIGD 1067 Query: 367 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES----IYYRAILLGI 200 +H+E+++RQ+ KVRV + G +++ LPG L+ + A + + S R +LLGI Sbjct: 1068 KHVEVMVRQMLRKVRVMDPGDTDL-LPGTLMDISDFTDANKDIVISGGVPATSRPVLLGI 1126 Query: 199 TRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHR 20 T+ASL T SF+S ASFQET RVL AA+RG+ D L GLKENV++G IIP GTG ++ + Sbjct: 1127 TKASLETNSFLSAASFQETTRVLTDAAIRGKKDHLIGLKENVIIGKIIPAGTGMARYRNI 1186 Query: 19 SP 14 P Sbjct: 1187 EP 1188
>RPOC_DESVH (Q727C6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1385 Score = 127 bits (318), Expect = 4e-29 Identities = 90/258 (34%), Positives = 137/258 (53%), Gaps = 44/258 (17%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARS------IDSLSPNLERRIEDWN 503 G+ L GD + E S++ DI GLP+V ++FE R + ++ + E Sbjct: 1101 GQDLQAGDIIARKPRETSKTKDIVGGLPRVAELFEVRKPKDMAVVSEIAGIVTYAGETKG 1160 Query: 502 ER---IPRILGVPWGFLI--GAELTIAQSRIS---------------------------- 422 +R + +G +L+ G +T+ Sbjct: 1161 KRKLVVTPEIGEAKEYLVPKGKHITVTDGDFVEAGDLLTEGHPELHDILRTRGEKYLARY 1220 Query: 421 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELI--GLLRAERAG 248 L ++IQ+VYR QGV I ++HIE+I+RQ+ KV V + G FL GE + G R E Sbjct: 1221 LTDEIQEVYRFQGVAIDDKHIEVIVRQMLKKVTVLDPG-GTTFLVGEQVDKGEFRVENT- 1278 Query: 247 RALDES---IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKEN 77 RA+ E ++LGIT+ASL T SFIS ASFQET +VL +A+LRG++D+L+GLKEN Sbjct: 1279 RAMGEGRTPATAEPLVLGITQASLTTSSFISAASFQETTKVLTEASLRGKMDYLRGLKEN 1338 Query: 76 VVLGGIIPVGTGFQKFVH 23 V++G +IP GTG++++V+ Sbjct: 1339 VIVGRLIPAGTGYREYVN 1356
>RPOC_GLUOX (Q5FTX8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1439 Score = 127 bits (318), Expect = 4e-29 Identities = 94/246 (38%), Positives = 129/246 (52%), Gaps = 44/246 (17%) Frame = -3 Query: 646 GDRLVTFKYEKSRSSDITQGLPKVEQIFEAR--SIDSLSPNLERRIE---DWNERIPRIL 482 GD L E S++ DIT GLP+V ++FEAR ++ E RIE D+ + I+ Sbjct: 1164 GDVLARIPREGSKTRDITGGLPRVAELFEARRPKDHAIIAEGEGRIEFGKDYKSKRCVIV 1223 Query: 481 -----GVPWGFLI--GAELTIAQSRIS----------------------------LVNKI 407 G +LI G +++ + LVN+I Sbjct: 1224 KNDDTGEETQYLIPKGKHVSVQEGDFVQKGDPLVDGPRVPHDILKVMGVEALSDYLVNEI 1283 Query: 406 QKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL---- 239 Q VYR QGV+I+++HIE+I+RQ+ KV + E G S +L GE + + E + L Sbjct: 1284 QDVYRLQGVKINDKHIEVIVRQMLQKVEILEPGDST-YLIGETVDRIEYEGENQRLMENG 1342 Query: 238 DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGI 59 D +L GIT+ASL TQSFIS ASFQET RVL AA G++D L GLKENV++G + Sbjct: 1343 DTPAKAMPVLQGITKASLQTQSFISAASFQETTRVLTDAATSGKVDTLNGLKENVIVGRL 1402 Query: 58 IPVGTG 41 IP GTG Sbjct: 1403 IPAGTG 1408
>RPOC_SALTY (P0A2R4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 127 bits (318), Expect = 4e-29 Identities = 96/253 (37%), Positives = 133/253 (52%), Gaps = 44/253 (17%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEAR------------SIDSLSPNLE- 524 G + GD L E + DIT GLP+V +FEAR I S + Sbjct: 1112 GVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEIAGIVSFGKETKG 1171 Query: 523 -RRI--------EDWNERIP--RILGVPWGFLI--------GAELTIAQSRIS------- 422 RR+ + + E IP R L V G + G E R+ Sbjct: 1172 KRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTR 1231 Query: 421 -LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR 245 +VN++Q VYR QGV+I+++HIE+I+RQ+ K + G S+ FL GE + R + A R Sbjct: 1232 YIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIESAGSSD-FLEGEQVEYSRVKIANR 1290 Query: 244 ALDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKEN 77 L+ + + LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKEN Sbjct: 1291 ELEANGKVGATFSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKEN 1350 Query: 76 VVLGGIIPVGTGF 38 V++G +IP GTG+ Sbjct: 1351 VIVGRLIPAGTGY 1363
>RPOC_SALTI (P0A2R5) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 127 bits (318), Expect = 4e-29 Identities = 96/253 (37%), Positives = 133/253 (52%), Gaps = 44/253 (17%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEAR------------SIDSLSPNLE- 524 G + GD L E + DIT GLP+V +FEAR I S + Sbjct: 1112 GVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEIAGIVSFGKETKG 1171 Query: 523 -RRI--------EDWNERIP--RILGVPWGFLI--------GAELTIAQSRIS------- 422 RR+ + + E IP R L V G + G E R+ Sbjct: 1172 KRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTR 1231 Query: 421 -LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR 245 +VN++Q VYR QGV+I+++HIE+I+RQ+ K + G S+ FL GE + R + A R Sbjct: 1232 YIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIESAGSSD-FLEGEQVEYSRVKIANR 1290 Query: 244 ALDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKEN 77 L+ + + LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKEN Sbjct: 1291 ELEANGKVGATFSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKEN 1350 Query: 76 VVLGGIIPVGTGF 38 V++G +IP GTG+ Sbjct: 1351 VIVGRLIPAGTGY 1363
>RPOC_SALPA (Q5PK92) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 127 bits (318), Expect = 4e-29 Identities = 96/253 (37%), Positives = 133/253 (52%), Gaps = 44/253 (17%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEAR------------SIDSLSPNLE- 524 G + GD L E + DIT GLP+V +FEAR I S + Sbjct: 1112 GVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEIAGIVSFGKETKG 1171 Query: 523 -RRI--------EDWNERIP--RILGVPWGFLI--------GAELTIAQSRIS------- 422 RR+ + + E IP R L V G + G E R+ Sbjct: 1172 KRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTR 1231 Query: 421 -LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR 245 +VN++Q VYR QGV+I+++HIE+I+RQ+ K + G S+ FL GE + R + A R Sbjct: 1232 YIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIESAGSSD-FLEGEQVEYSRVKIANR 1290 Query: 244 ALDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKEN 77 L+ + + LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKEN Sbjct: 1291 ELEANGKVGATFSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKEN 1350 Query: 76 VVLGGIIPVGTGF 38 V++G +IP GTG+ Sbjct: 1351 VIVGRLIPAGTGY 1363
>RPOC_SALCH (Q57H68) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 127 bits (318), Expect = 4e-29 Identities = 96/253 (37%), Positives = 133/253 (52%), Gaps = 44/253 (17%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEAR------------SIDSLSPNLE- 524 G + GD L E + DIT GLP+V +FEAR I S + Sbjct: 1112 GVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEIAGIVSFGKETKG 1171 Query: 523 -RRI--------EDWNERIP--RILGVPWGFLI--------GAELTIAQSRIS------- 422 RR+ + + E IP R L V G + G E R+ Sbjct: 1172 KRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTR 1231 Query: 421 -LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR 245 +VN++Q VYR QGV+I+++HIE+I+RQ+ K + G S+ FL GE + R + A R Sbjct: 1232 YIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIESAGSSD-FLEGEQVEYSRVKIANR 1290 Query: 244 ALDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKEN 77 L+ + + LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKEN Sbjct: 1291 ELEANGKVGATFSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKEN 1350 Query: 76 VVLGGIIPVGTGF 38 V++G +IP GTG+ Sbjct: 1351 VIVGRLIPAGTGY 1363
>RPOC_NOCFA (Q5YPE1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1317 Score = 126 bits (317), Expect = 5e-29 Identities = 89/256 (34%), Positives = 125/256 (48%), Gaps = 55/256 (21%) Frame = -3 Query: 631 TFKYEKSRSSDITQGLPKVEQIFEARS--------------------------------- 551 TF DIT GLP+V+++FEAR Sbjct: 1013 TFHQGGVAGDDITGGLPRVQELFEARVPKGKAPIAEVSGRVRLEDDDRFYKITIIPDDGG 1072 Query: 550 ----IDSLSPNLERRIEDWNERIPRILGVPWGFLIGAELTIA--------------QSRI 425 D LS R+ ++ R+L +G +L Q ++ Sbjct: 1073 EEVVYDKLSKRQRLRVFKHDDGTERLLSDGDHVEVGQQLLEGAADPHEVLRVMGPRQVQV 1132 Query: 424 SLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR 245 LV+++Q+VYRSQGV IH++HIE+I+RQ+ +V + + G S FLPG L E A R Sbjct: 1133 HLVHEVQEVYRSQGVSIHDKHIEVIVRQMLRRVTIIDSG-STEFLPGSLTERAEFEAANR 1191 Query: 244 AL----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKEN 77 + E R +L+GIT+ASL T S++S ASFQET RVL AA+ R D L GLKEN Sbjct: 1192 RVVAEGGEPASGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLIGLKEN 1251 Query: 76 VVLGGIIPVGTGFQKF 29 V++G +IP GTG ++ Sbjct: 1252 VIIGKLIPAGTGINRY 1267
>RPOC_STRMU (Q8DS47) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1209 Score = 126 bits (317), Expect = 5e-29 Identities = 88/242 (36%), Positives = 131/242 (54%), Gaps = 44/242 (18%) Frame = -3 Query: 607 SSDITQGLPKVEQIFEARS------IDSLSPNLERRIEDWNERIPRIL------------ 482 ++DITQGLP++++IFEAR+ I + + ED R ++ Sbjct: 948 NADITQGLPRIQEIFEARNPKGEAVITEVKGQVTDIEEDAATRTKKVYVKGATGEGEYTV 1007 Query: 481 ----------------GVPW--GFLIGAELTIAQSRIS----LVNKIQKVYRSQGVQIHN 368 G P G + L + +S L+ ++QKVYRSQGV+I + Sbjct: 1008 PFTARMKVQVGDEVHRGAPLTEGSIQPKHLLEVRDTLSVETYLLAEVQKVYRSQGVEIGD 1067 Query: 367 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES----IYYRAILLGI 200 +H+E+++RQ+ KVRV + G + + LPG L+ + A R + + R +L+GI Sbjct: 1068 KHVEVMVRQMLRKVRVMDPGDTGL-LPGILMDIADFTDANRDIVIAGGIPATSRPVLMGI 1126 Query: 199 TRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHR 20 T+ASL T SF+S ASFQET RVL AA+RG+ D L GLKENV++G IIP GTG ++ + Sbjct: 1127 TKASLETNSFLSAASFQETTRVLTDAAIRGKKDHLLGLKENVIIGKIIPAGTGMARYRNL 1186 Query: 19 SP 14 P Sbjct: 1187 EP 1188
>RPOC_AGRT5 (Q8UE09) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1402 Score = 126 bits (317), Expect = 5e-29 Identities = 88/252 (34%), Positives = 134/252 (53%), Gaps = 44/252 (17%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARS------IDSLSPNL-------- 527 G + +GD L E +++ DIT GLP+V ++FEAR I + + Sbjct: 1106 GSKVSQGDVLARSPLESAKTKDITGGLPRVAELFEARRPKDHAIIAEIDGTIRLGRDYKN 1165 Query: 526 ERRI-----EDWNERIPRIL--GVPWGFLIGAELTIAQSRIS------------------ 422 +RR+ ED E + ++ G P+ G + + + Sbjct: 1166 KRRVMIEPAEDGVEPVEYLIPKGKPFHLQEGDYIEKGEYILDGNPAPHDILAIKGVEALA 1225 Query: 421 --LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAG 248 LVN+IQ+VYR QGV I+++HIE+I+RQ+ KV +++ G S + + + + Sbjct: 1226 SYLVNEIQEVYRLQGVVINDKHIEVIVRQMLQKVEITDAGDSQYIVGDNVDRIEMEDMND 1285 Query: 247 RALDES---IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKEN 77 R ++E Y +LLGIT+ASL T SFIS ASFQET +VL +AA+ G+ D L+GLKEN Sbjct: 1286 RLIEEGKKPAYGEPVLLGITKASLQTPSFISAASFQETTKVLTEAAIAGKTDTLQGLKEN 1345 Query: 76 VVLGGIIPVGTG 41 V++G +IP GTG Sbjct: 1346 VIVGRLIPAGTG 1357
>RPOC_LACPL (Q88XZ2) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1213 Score = 126 bits (317), Expect = 5e-29 Identities = 92/242 (38%), Positives = 132/242 (54%), Gaps = 44/242 (18%) Frame = -3 Query: 601 DITQGLPKVEQIFEARS------IDSLSPNLERRIEDWNERIPRI--------------- 485 DITQGLP+V++I E+R+ I ++ +E E+ ER + Sbjct: 948 DITQGLPRVQEIVESRNPKGRAEISEVTGTVELIEENPAERTKEVTVKGETDTRTYTLPL 1007 Query: 484 ---LGVPWGFLI--GAELTIAQ--------------SRISLVNKIQKVYRSQGVQIHNRH 362 + V G I GA L I + L+ ++QKVYR QGV+I ++H Sbjct: 1008 TARMAVSEGDFIHRGAALNIGSIDPKQLIQVRDVLSTENYLLREVQKVYRMQGVEIGDKH 1067 Query: 361 IEIIIRQVTSKVRVSEDGMSNVFLPGELIGL--LRAERAGRALDESI--YYRAILLGITR 194 +EI+IRQ+ KVRV + G ++V LPG L+ + + E + I R ++LGIT+ Sbjct: 1068 VEIMIRQMLRKVRVMDPGDTDV-LPGTLMDIADFKDENYKTLIAGGIPATSRPVILGITK 1126 Query: 193 ASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRSP 14 A+L T SF+S ASFQET RVL AA+RG+ D L GLKENV++G IIP GTG + H P Sbjct: 1127 AALETNSFLSAASFQETTRVLTDAAIRGKNDPLIGLKENVIIGKIIPAGTGMPVYRHIKP 1186 Query: 13 QD 8 ++ Sbjct: 1187 KE 1188
>RPOC_NITOC (Q3J8Q8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1403 Score = 126 bits (317), Expect = 5e-29 Identities = 91/245 (37%), Positives = 128/245 (52%), Gaps = 43/245 (17%) Frame = -3 Query: 646 GDRLVTFKYEKSRSSDITQGLPKVEQIFEAR---------------SIDSLSPNLERRI- 515 GD L E S++ DIT GLP+V +FEAR S + +R I Sbjct: 1118 GDVLARLPQESSKTRDITGGLPRVADLFEARKPKDPAVLAEISGTVSFGKETKGKQRLII 1177 Query: 514 -----EDWNERIPR------------------ILGVPWGFLIGAELTIAQSRISLVNKIQ 404 E E IP+ + G P I + + +VN++Q Sbjct: 1178 TGSDGERHEELIPKWRQVNVFEGEHVEKGEAIVDGPPVPHDILRLRGVEELTYYIVNEVQ 1237 Query: 403 KVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES-- 230 +VYR QGV+I+++HIE+II Q+ KV + E G ++ FL GE I R +++ Sbjct: 1238 EVYRLQGVKINDKHIEVIICQMLRKVEIIEPGDTS-FLKGEQIDKPRLLEENEKMEKEDK 1296 Query: 229 --IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGII 56 + +LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV++G +I Sbjct: 1297 LPARFEPVLLGITKASLATESFISAASFQETTRVLTEAAVTGKCDELRGLKENVIVGRLI 1356 Query: 55 PVGTG 41 P GTG Sbjct: 1357 PAGTG 1361
>RPOC_VIBCH (Q9KV29) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1401 Score = 126 bits (317), Expect = 5e-29 Identities = 95/246 (38%), Positives = 127/246 (51%), Gaps = 43/246 (17%) Frame = -3 Query: 646 GDRLVTFKYEKSRSSDITQGLPKVEQIFEAR---------------SIDSLSPNLERRI- 515 GD L + + DIT GLP+V +FEAR S + R I Sbjct: 1118 GDTLARIPQKSGGNKDITGGLPRVADLFEARKPKEPAILAEHSGTVSFGKETKGKRRLII 1177 Query: 514 -----EDWNERIP--RILGVPWGFLIGAELTIAQSRIS----------------LVNKIQ 404 + + E IP R L V G I IA S + N++Q Sbjct: 1178 TRDSGDTYEEMIPKHRQLNVFEGERIERGDVIADGPESPHDILRLRGIHAVTTYIANEVQ 1237 Query: 403 KVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----D 236 +VYR QGV+I+++HIE I+RQ+ K ++ G S FLPGE + + + A R L Sbjct: 1238 EVYRLQGVKINDKHIETIVRQMLRKCTITFAGDSE-FLPGETVEYSQVKIANRKLVEEGK 1296 Query: 235 ESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGII 56 E + LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV++G +I Sbjct: 1297 EPARFERELLGITKASLATESFISAASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLI 1356 Query: 55 PVGTGF 38 P GTGF Sbjct: 1357 PAGTGF 1362
>RPOC_PARUW (Q6MDM0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1388 Score = 126 bits (317), Expect = 5e-29 Identities = 92/255 (36%), Positives = 135/255 (52%), Gaps = 44/255 (17%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARS------IDSLSPNLERRIEDWN 503 GE G L ++ DIT GLP+V ++FEAR I + ++ R N Sbjct: 1113 GEFATAGKMLARLPRSAIKTKDITGGLPRVAELFEARKPKDSAEIAKIDGVVDFRGVQKN 1172 Query: 502 ERI----PRILGVPWGFLI----------------GAELT--------------IAQSRI 425 +RI + G+ LI G +LT + + + Sbjct: 1173 KRIVVVRDEMTGMEEEHLISHTKHLIIQRGDHVVKGQQLTDGLVIPHEILDICGVRELQK 1232 Query: 424 SLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR 245 LVN++Q+VYR QGV I+++HIEII+RQ+ KVRV + G +++ L GE + E + Sbjct: 1233 YLVNQVQEVYRLQGVDINDKHIEIIVRQMLKKVRVIDPGDTSL-LYGEEVDKKEFEVENQ 1291 Query: 244 ALDE----SIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKEN 77 + + + +LLGIT+ASL+T+SFIS ASFQ+T RVL +AA G+ D+L G KEN Sbjct: 1292 KVSQEGGKAAQATPVLLGITKASLSTESFISAASFQDTTRVLTEAACAGKTDYLVGFKEN 1351 Query: 76 VVLGGIIPVGTGFQK 32 V++G IIP GTGF + Sbjct: 1352 VIMGHIIPGGTGFDR 1366
>RPOC_RHOPA (Q6N4S0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1402 Score = 126 bits (316), Expect = 7e-29 Identities = 91/247 (36%), Positives = 136/247 (55%), Gaps = 45/247 (18%) Frame = -3 Query: 646 GDRLVTFKYEKSRSSDITQGLPKVEQIFEAR---------------------------SI 548 GD L E +++ DIT GLP+V ++FEAR SI Sbjct: 1113 GDILARISTESAKTRDITGGLPRVAELFEARRPKDAAIIAEIAGTIRFGRDYKNKRRLSI 1172 Query: 547 DSLSPNLERR-----------IEDWN--ERIPRIL-GVPWGFLIGAELTIAQSRISLVNK 410 + L N E R ++D + E+ I+ G P I A I + LVN+ Sbjct: 1173 EPLDKNEEAREYLIPKGKHIHLQDGDVVEKGDFIVEGNPAPHDILAIKGIEELAAYLVNE 1232 Query: 409 IQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAG-RALDE 233 IQ+VYR QGV I+++HIE+I+RQ+ K+ +++ G +++ + GE + + +A++E Sbjct: 1233 IQEVYRLQGVLINDKHIEVIVRQMLQKIEITDQGDTDM-ISGEQVDKIEFNALNAKAVEE 1291 Query: 232 S---IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGG 62 +LLGIT+ASL T+SF S ASFQET RVL +AA+ G++D L+GLKENV++G Sbjct: 1292 GKKPATGNPVLLGITKASLQTRSFFSAASFQETTRVLTEAAVNGKVDPLEGLKENVIVGR 1351 Query: 61 IIPVGTG 41 +IP GTG Sbjct: 1352 LIPAGTG 1358
>RPOC_LACJO (Q74L94) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1224 Score = 126 bits (316), Expect = 7e-29 Identities = 87/243 (35%), Positives = 131/243 (53%), Gaps = 44/243 (18%) Frame = -3 Query: 607 SSDITQGLPKVEQIFEAR----------------SIDSLSPNLERRIEDWNERIPRILGV 476 ++DITQGLP+V+++FEAR SI+ R+I + R V Sbjct: 948 AADITQGLPRVQELFEARNPKGRATISEVTGEVTSIEEDPAEHTRQITVKGQTDTRTYDV 1007 Query: 475 PWGFLI----------GAELTIAQ--------------SRISLVNKIQKVYRSQGVQIHN 368 P+ + G +LT+ + ++++IQK YR QGV+I + Sbjct: 1008 PYTASVAVAEGDHVVRGDKLTLGSIDPKELIRVRDALTTEKYILSEIQKAYRMQGVEIAD 1067 Query: 367 RHIEIIIRQVTSKVRVSEDGMSNVFLPGEL--IGLLRAERAGRALDESIYYRA--ILLGI 200 +H+E++ RQ+ KVR+ + G +++ LPGEL IG +A + I A ++LGI Sbjct: 1068 KHVEVMARQMLQKVRILDPGETDI-LPGELMDIGEFKARNREVIISGGIPATAQSVILGI 1126 Query: 199 TRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHR 20 T+A+L T SF+S ASFQET RVL A++RG+ D L GLKENV++G IIP GTG + Sbjct: 1127 TKAALETNSFLSAASFQETTRVLTDASIRGKNDPLLGLKENVIIGKIIPAGTGMPVYREM 1186 Query: 19 SPQ 11 P+ Sbjct: 1187 EPK 1189
>RPOC_BUCAI (P57145) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 125 bits (315), Expect = 9e-29 Identities = 95/253 (37%), Positives = 132/253 (52%), Gaps = 44/253 (17%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE------------- 524 G + GD L E + DIT GLP+V +FEAR L+ E Sbjct: 1112 GVQISSGDTLARVPQESGGTKDITGGLPRVADLFEARRPKELAILAEISGIISFGKETKG 1171 Query: 523 -RRI--------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS--------------- 422 RR+ + + E IP R L V G + I+ S Sbjct: 1172 KRRLVITPVDGSDSYEEMIPKWRQLNVFEGERVDRGDVISDGPESPHDILRLRGVQAVTR 1231 Query: 421 -LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR 245 +VN++Q+VYR QGV+I+++HIE+IIRQ+ K V + S+ FL GE + + + R Sbjct: 1232 YIVNEVQEVYRLQGVKINDKHIEVIIRQMLRKATVVKSRDSD-FLEGEQVEFSHIKISNR 1290 Query: 244 ALDESIYYRAI----LLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKEN 77 LD+ A LLGIT+ASL T+SFIS ASFQET RVL ++A+ G+ D L+GLKEN Sbjct: 1291 MLDKKKKMPATFSRDLLGITKASLATESFISAASFQETTRVLTESAVAGKRDELRGLKEN 1350 Query: 76 VVLGGIIPVGTGF 38 V++G +IP GTG+ Sbjct: 1351 VIVGRLIPAGTGY 1363
>RPOC_PASMU (Q9CK92) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1417 Score = 125 bits (315), Expect = 9e-29 Identities = 97/257 (37%), Positives = 138/257 (53%), Gaps = 43/257 (16%) Frame = -3 Query: 646 GDRLVTFKYEKSRSSDITQGLPKVEQIFEARS------------IDSLSPNLE--RRI-- 515 G+ L E + DIT GLP+V +FEAR I S + RR+ Sbjct: 1119 GEPLARIPQESVGTKDITGGLPRVADLFEARKPKEPAILAEISGIVSFGKETKGKRRLLI 1178 Query: 514 -----EDWNERIP--RILGVPWGFLI--------GAELTIAQSRIS--------LVNKIQ 404 E + E IP R L V G ++ GAE R+ +VN++Q Sbjct: 1179 TPAEGETYEEMIPKWRQLNVFEGEMVERGDLISDGAETPHDILRLRGVHAVTEYIVNEVQ 1238 Query: 403 KVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES-- 230 +VYR QGV+I+++HIE+I+RQ+ K V++ + FL GE + + R + R + Sbjct: 1239 EVYRLQGVKINDKHIEVIVRQMLRKGIVTK-AYDSEFLEGEQVEVARVKIVNRKREAEGK 1297 Query: 229 --IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGII 56 + + LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV++G +I Sbjct: 1298 PLVEFERELLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLI 1357 Query: 55 PVGTGFQKFVHRSPQDK 5 P GTGF H++ Q K Sbjct: 1358 PAGTGFA--YHQNRQKK 1372
>RPOC_HAEIN (P43739) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1415 Score = 125 bits (314), Expect = 1e-28 Identities = 94/252 (37%), Positives = 134/252 (53%), Gaps = 43/252 (17%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARS------------IDSLSPNLE- 524 G + G+ L E + DIT GLP+V +FEAR I S + Sbjct: 1113 GTAVKVGEPLARIPQESVGTKDITGGLPRVADLFEARKPKEPAILAEISGIVSFGKETKG 1172 Query: 523 -RRI-------EDWNERIP--RILGVPWGFLI--------GAELTIAQSRIS-------- 422 RR+ E + E IP R L V G ++ GAE R+ Sbjct: 1173 KRRLLITPAEGETYEEMIPKWRQLNVFEGEMVQRGDVISDGAETPHDILRLRGVRAVTEY 1232 Query: 421 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 242 +VN++Q VYR QGV+I+++HIE+I+RQ+ K +++ + FL GE + + R + R Sbjct: 1233 IVNEVQDVYRLQGVKINDKHIEVIVRQMLRKAVITK-AYDSEFLEGEQVEVARVKIVNRQ 1291 Query: 241 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 74 + + + LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV Sbjct: 1292 REAEGKPPVEFERELLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENV 1351 Query: 73 VLGGIIPVGTGF 38 ++G +IP GTGF Sbjct: 1352 IVGRLIPAGTGF 1363
>RPOC_HAEI8 (Q4QN34) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1416 Score = 125 bits (314), Expect = 1e-28 Identities = 94/252 (37%), Positives = 134/252 (53%), Gaps = 43/252 (17%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARS------------IDSLSPNLE- 524 G + G+ L E + DIT GLP+V +FEAR I S + Sbjct: 1113 GAAVKVGEPLARIPQESVGTKDITGGLPRVADLFEARKPKEPAILAEISGIVSFGKETKG 1172 Query: 523 -RRI-------EDWNERIP--RILGVPWGFLI--------GAELTIAQSRIS-------- 422 RR+ E + E IP R L V G ++ GAE R+ Sbjct: 1173 KRRLLITPAEGETYEEMIPKWRQLNVFEGEMVQRGDVISDGAETPHDILRLRGVRAVTEY 1232 Query: 421 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 242 +VN++Q VYR QGV+I+++HIE+I+RQ+ K +++ + FL GE + + R + R Sbjct: 1233 IVNEVQDVYRLQGVKINDKHIEVIVRQMLRKAVITK-AYDSEFLEGEQVEVARVKIVNRQ 1291 Query: 241 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 74 + + + LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV Sbjct: 1292 REAEGKPPVEFERELLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENV 1351 Query: 73 VLGGIIPVGTGF 38 ++G +IP GTGF Sbjct: 1352 IVGRLIPAGTGF 1363
>RPOC_NITWN (Q3SSX9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1399 Score = 125 bits (314), Expect = 1e-28 Identities = 93/247 (37%), Positives = 133/247 (53%), Gaps = 45/247 (18%) Frame = -3 Query: 646 GDRLVTFKYEKSRSSDITQGLPKVEQIFEARS------IDSLSPNL--------ERRIE- 512 GD L E +++ DIT GLP+V ++FEAR I ++ + +RRI Sbjct: 1111 GDILARISTESAKTRDITGGLPRVAELFEARRPKDAAIIAEIAGTIRFGRDYKNKRRISI 1170 Query: 511 ---DWNER-----IPR------------------ILGVPWGFLIGAELTIAQSRISLVNK 410 D E IP+ + G P I A I + LVN+ Sbjct: 1171 EPVDQEEETREYLIPKGKHIHLQDGDIVEKGDFIVDGNPAPHDILAIKGIEELAAYLVNE 1230 Query: 409 IQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES 230 IQ+VYR QGV I+++HIE+I+RQ+ KV + + G +++ + GE I + +R E Sbjct: 1231 IQEVYRLQGVLINDKHIEVIVRQMLQKVEIIDQGETDM-ISGEQIDKIEFDRLNLKAQEE 1289 Query: 229 IYYRA----ILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGG 62 A +LLGIT+ASL T+SF S ASFQET RVL +AA+ G++D L+GLKENV++G Sbjct: 1290 GKKIATGTPVLLGITKASLQTRSFFSAASFQETTRVLTEAAVNGKVDPLEGLKENVIVGR 1349 Query: 61 IIPVGTG 41 +IP GTG Sbjct: 1350 LIPAGTG 1356
>RPOC_MYCLE (P30761) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1316 Score = 125 bits (314), Expect = 1e-28 Identities = 89/247 (36%), Positives = 126/247 (51%), Gaps = 56/247 (22%) Frame = -3 Query: 601 DITQGLPKVEQIFEARSIDSLSPNLER----RIEDWNERIPRILGVP------------- 473 DIT GLP+V+++FEAR +P + R+ED ER +I VP Sbjct: 1023 DITGGLPRVQELFEARVPRGKAPIADVTGRVRLED-GERFYKITIVPDDGGEEVVYDKLS 1081 Query: 472 -------WGFLIGAELTIAQS----------------------------RISLVNKIQKV 398 + G+E ++ +I LV ++Q+V Sbjct: 1082 KRQRLRVFKHADGSERVLSDGDYVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQEV 1141 Query: 397 YRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DES 230 YR+QGV IH++HIE+I+RQ+ +V + + G S FLPG LI E R + E Sbjct: 1142 YRAQGVSIHDKHIEVIVRQMLRRVTIIDSG-STEFLPGSLIDRAEFESENRRVVAESGEP 1200 Query: 229 IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPV 50 R +L+GIT+ASL T S++S ASFQET RVL AA+ R D L GLKENV++G +IP Sbjct: 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260 Query: 49 GTGFQKF 29 GTG ++ Sbjct: 1261 GTGINRY 1267
>RPOC_RHILO (Q98N65) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1398 Score = 125 bits (313), Expect = 2e-28 Identities = 67/131 (51%), Positives = 92/131 (70%), Gaps = 4/131 (3%) Frame = -3 Query: 421 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 242 LVN+IQ+VYR QGV I+++HIE+I+RQ+ KV ++ G S ++PG+ + ++ E Sbjct: 1227 LVNEIQEVYRLQGVSINDKHIEVIVRQMLQKVEITTQGDST-YIPGDHVDVIELEEVNER 1285 Query: 241 LDESIYYRA----ILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 74 L E A +LLGIT+ASL T SFIS ASFQET RVL +AA+ G+ D L+GLKENV Sbjct: 1286 LIEDGKKPAEGQPVLLGITKASLQTPSFISAASFQETTRVLTEAAVAGKTDMLQGLKENV 1345 Query: 73 VLGGIIPVGTG 41 ++G +IP GTG Sbjct: 1346 IVGRLIPAGTG 1356 Score = 34.7 bits (78), Expect = 0.27 Identities = 15/31 (48%), Positives = 21/31 (67%) Frame = -3 Query: 646 GDRLVTFKYEKSRSSDITQGLPKVEQIFEAR 554 GD L E +++ DIT GLP+V ++FEAR Sbjct: 1111 GDVLARIPMESAKTKDITGGLPRVAELFEAR 1141
>RPOC_MYCPA (Q73SE3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1316 Score = 125 bits (313), Expect = 2e-28 Identities = 86/246 (34%), Positives = 121/246 (49%), Gaps = 55/246 (22%) Frame = -3 Query: 601 DITQGLPKVEQIFEARS-------------------------------------IDSLSP 533 DIT GLP+V+++FEAR D LS Sbjct: 1023 DITGGLPRVQELFEARIPRGKAPIADVTGRVRLEDGERFYKITIVPDDGSEEVVYDKLSK 1082 Query: 532 NLERRIEDWNERIPRILGVPWGFLIGAELTIAQS--------------RISLVNKIQKVY 395 R+ + R+L +G +L + +I LV ++Q+VY Sbjct: 1083 RQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQEVY 1142 Query: 394 RSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESI 227 R+QGV IH++HIE+I+RQ+ +V + + G S FLPG LI E R + E Sbjct: 1143 RAQGVSIHDKHIEVIVRQMLRRVTIIDSG-STEFLPGSLIDRAEFEAENRRVVAEGGEPA 1201 Query: 226 YYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVG 47 R +L+GIT+ASL T S++S ASFQET RVL AA+ R D L GLKENV++G +IP G Sbjct: 1202 AGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPAG 1261 Query: 46 TGFQKF 29 TG ++ Sbjct: 1262 TGINRY 1267
>RPOC_RALSO (Q8XUZ9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1409 Score = 125 bits (313), Expect = 2e-28 Identities = 95/269 (35%), Positives = 140/269 (52%), Gaps = 49/269 (18%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE-------RRIEDW 506 G+ ++ G+ L E ++ DIT GLP+V ++FEARS + E + Sbjct: 1119 GQQVHVGEVLARIPTESQKTRDITGGLPRVAELFEARSPKDAAVLAEVTGTTSFGKDTKG 1178 Query: 505 NER--IPRILGVPWGFLIGAELTIAQSRISLVNK-------------------------- 410 +R I + G FLI E + +VNK Sbjct: 1179 KQRLVITDLDGNAHEFLIAKEKQVLVHDGQVVNKGEMIVEGPADPHDILRLKGVEELATY 1238 Query: 409 ----IQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 242 +Q VYR QGV+I+++HIE+I+RQ+ +V++ + G + F+PGE + ER+ Sbjct: 1239 IVDEVQDVYRLQGVKINDKHIEVIVRQMLRRVQIVDVGDTK-FIPGEQV-----ERS-EL 1291 Query: 241 LDES----------IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLK 92 LDE+ Y +LLGIT+ASL+T SFIS ASFQET RVL +AA+ G++D L+ Sbjct: 1292 LDENDKVIAEGKRPATYENLLLGITKASLSTDSFISAASFQETTRVLTEAAIMGKVDDLR 1351 Query: 91 GLKENVVLGGIIPVGTGFQKFVHRSPQDK 5 GLKENV++G +IP GTG HR+ + K Sbjct: 1352 GLKENVIVGRLIPAGTGLA--YHRARKAK 1378
>RPOC_ERWCT (Q6DAM9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 125 bits (313), Expect = 2e-28 Identities = 93/247 (37%), Positives = 131/247 (53%), Gaps = 44/247 (17%) Frame = -3 Query: 646 GDRLVTFKYEKSRSSDITQGLPKVEQIFEAR------------SIDSLSPNLE--RRI-- 515 GD L E S + DIT GLP+V +FEAR I S + RR+ Sbjct: 1118 GDTLARLPQESSGTKDITGGLPRVADLFEARRPKEPAILAEISGIISFGKETKGKRRLVI 1177 Query: 514 ------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS----------------LVNKI 407 + + E IP R L V G ++ ++ S + N++ Sbjct: 1178 SPLDGSDAYEEMIPKWRQLNVFEGEVVERGDVVSDGPESPHDILRLRGVHAVTRYITNEV 1237 Query: 406 QKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDE-- 233 Q+VYR QGV+I+++HIE+I+RQ+ K + G S FL GE + R + A R L+ Sbjct: 1238 QEVYRLQGVKINDKHIEVIVRQMLRKGTIVSAG-STEFLEGEQAEMSRIKIANRKLEADG 1296 Query: 232 --SIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGI 59 + + LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV++G + Sbjct: 1297 KITATFSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRL 1356 Query: 58 IPVGTGF 38 IP GTG+ Sbjct: 1357 IPAGTGY 1363
>RPOC_RALEJ (Q46WD5) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1415 Score = 124 bits (312), Expect = 2e-28 Identities = 93/257 (36%), Positives = 135/257 (52%), Gaps = 49/257 (19%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE-------RRIEDW 506 G+ ++ G+ L E ++ DIT GLP+V ++FEARS + E + Sbjct: 1119 GQQVHVGEVLARIPTESQKTRDITGGLPRVAELFEARSPKDAAVLAEVTGTTSFGKDTKG 1178 Query: 505 NER--IPRILGVPWGFLIGAELTIAQSRISLVNK-------------------------- 410 +R I + G FLI E + +VNK Sbjct: 1179 KQRLVITDLDGNAHEFLIAKEKQVLVHDGQVVNKGEMIVEGPADPHDILRLKGIEELAHY 1238 Query: 409 ----IQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 242 +Q VYR QGV+I+++HIE+I+RQ+ +V+V++ G + F+PGE + ER+ Sbjct: 1239 IVDEVQDVYRLQGVKINDKHIEVIVRQMLRRVQVADVGDTK-FIPGEQV-----ERS-EL 1291 Query: 241 LDES----------IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLK 92 LDE+ Y +LLGIT+ASL+T SFIS ASFQET RVL +AA+ G+ D L+ Sbjct: 1292 LDENDRVIAEGKRPATYENLLLGITKASLSTDSFISAASFQETTRVLTEAAIMGKTDDLR 1351 Query: 91 GLKENVVLGGIIPVGTG 41 GLKENV++G +IP GTG Sbjct: 1352 GLKENVIVGRLIPAGTG 1368
>RPOC_XANCP (Q8PC55) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1405 Score = 124 bits (312), Expect = 2e-28 Identities = 95/245 (38%), Positives = 128/245 (52%), Gaps = 43/245 (17%) Frame = -3 Query: 646 GDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERR----------------I 515 GD + E S++ DIT GLP+V +FEAR + ER I Sbjct: 1120 GDVVAKIPQEASKTRDITGGLPRVADLFEARKPKDPAILAERSGIISFGKDTKGKQRLII 1179 Query: 514 EDWN-----ERIPR------------------ILGVPWGFLIGAELTIAQSRISLVNKIQ 404 +D + E IP+ + G P I L + LV +IQ Sbjct: 1180 KDTDGSEHEELIPKYRQIIVFEGEHVTKGETVVDGEPSPQDILRLLGVEPLAAYLVKEIQ 1239 Query: 403 KVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRA-ERAGRALDES- 230 VYR QGV+I+++HIE+I RQ+ KV +++ G S FL GE + R E R + + Sbjct: 1240 DVYRLQGVKINDKHIEVITRQMLRKVEITDQGNSK-FLNGEQVERQRVIEENARLVTRNE 1298 Query: 229 --IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGII 56 Y +LLGIT+ASL T+SFIS ASFQET RVL +AA+RG D L+GLKENV++G +I Sbjct: 1299 LPAKYDPVLLGITKASLATESFISAASFQETTRVLTEAAVRGTRDNLRGLKENVIVGRLI 1358 Query: 55 PVGTG 41 P GTG Sbjct: 1359 PAGTG 1363
>RPOC_XANC8 (Q4URD3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1405 Score = 124 bits (312), Expect = 2e-28 Identities = 95/245 (38%), Positives = 128/245 (52%), Gaps = 43/245 (17%) Frame = -3 Query: 646 GDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERR----------------I 515 GD + E S++ DIT GLP+V +FEAR + ER I Sbjct: 1120 GDVVAKIPQEASKTRDITGGLPRVADLFEARKPKDPAILAERSGIISFGKDTKGKQRLII 1179 Query: 514 EDWN-----ERIPR------------------ILGVPWGFLIGAELTIAQSRISLVNKIQ 404 +D + E IP+ + G P I L + LV +IQ Sbjct: 1180 KDTDGSEHEELIPKYRQIIVFEGEHVTKGETVVDGEPSPQDILRLLGVEPLAAYLVKEIQ 1239 Query: 403 KVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRA-ERAGRALDES- 230 VYR QGV+I+++HIE+I RQ+ KV +++ G S FL GE + R E R + + Sbjct: 1240 DVYRLQGVKINDKHIEVITRQMLRKVEITDQGNSK-FLNGEQVERQRVIEENARLVTRNE 1298 Query: 229 --IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGII 56 Y +LLGIT+ASL T+SFIS ASFQET RVL +AA+RG D L+GLKENV++G +I Sbjct: 1299 LPAKYDPVLLGITKASLATESFISAASFQETTRVLTEAAVRGTRDNLRGLKENVIVGRLI 1358 Query: 55 PVGTG 41 P GTG Sbjct: 1359 PAGTG 1363
>RPOC_PROAC (Q6A6K7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1293 Score = 124 bits (312), Expect = 2e-28 Identities = 95/254 (37%), Positives = 130/254 (51%), Gaps = 53/254 (20%) Frame = -3 Query: 631 TFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLER----RIEDWNER----------- 497 TF DITQGLP+V ++FEARS SP E RI++ + R Sbjct: 996 TFHTGGVAGDDITQGLPRVVELFEARSPKGKSPLAEAAGVIRIDESDNRRKLVLVRDDGE 1055 Query: 496 ------IPRILGVPWGFLIGAELTIAQS--------------------RIS--------L 419 +PR + + L G I RIS L Sbjct: 1056 DDVEYVVPRRARLEFD-LDGTHRVIRDGVRVAAGEQLMGGTADPQDVLRISGVRRVQEYL 1114 Query: 418 VNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR-A 242 V ++QKVY +QG IH +HIEI+IRQ+ ++ V E G + + +PGEL+ E A R A Sbjct: 1115 VKEVQKVYNTQGAGIHEKHIEIVIRQMLRRITVIESGDTQM-MPGELVDRGAYEAANRKA 1173 Query: 241 LDES---IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVV 71 + E R +L+GIT+ASL T+S++S ASFQET +VL AA+ G+ D L GLKENV+ Sbjct: 1174 VAEGGRPAEGRPVLMGITKASLATESWLSAASFQETTKVLTDAAINGKTDTLVGLKENVI 1233 Query: 70 LGGIIPVGTGFQKF 29 LG +IP GTG + + Sbjct: 1234 LGKLIPAGTGLEVY 1247
>RPOC_YERPS (Q66FQ1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1406 Score = 124 bits (312), Expect = 2e-28 Identities = 94/248 (37%), Positives = 134/248 (54%), Gaps = 45/248 (18%) Frame = -3 Query: 646 GDRLVTFKYEKSRSSDITQGLPKVEQIFEAR------------SIDSLSPNLE--RRI-- 515 GD L E S + DIT GLP+V +FEAR I S + RR+ Sbjct: 1118 GDTLARIPQESSGTKDITGGLPRVADLFEARRPKEPAILAEISGIISFGKETKGKRRLVI 1177 Query: 514 ------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS----------------LVNKI 407 + + E IP R L V G ++ ++ S + N++ Sbjct: 1178 SPLDGSDAYEEMIPKWRQLNVFEGEVVERGDVVSDGPESPHDILRLRGVHAVTRYITNEV 1237 Query: 406 QKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALD--- 236 Q+VYR QGV+I+++HIE+I+RQ+ K + + G ++ FL GE + R + A R L Sbjct: 1238 QEVYRLQGVKINDKHIEVIVRQMLRKGTIVDAGSTD-FLEGEQAEMSRVKIANRKLAAEG 1296 Query: 235 --ESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGG 62 E+ + R LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV++G Sbjct: 1297 KIEATFTRD-LLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGR 1355 Query: 61 IIPVGTGF 38 +IP GTG+ Sbjct: 1356 LIPAGTGY 1363
>RPOC_YERPE (Q8D1H3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1406 Score = 124 bits (312), Expect = 2e-28 Identities = 94/248 (37%), Positives = 134/248 (54%), Gaps = 45/248 (18%) Frame = -3 Query: 646 GDRLVTFKYEKSRSSDITQGLPKVEQIFEAR------------SIDSLSPNLE--RRI-- 515 GD L E S + DIT GLP+V +FEAR I S + RR+ Sbjct: 1118 GDTLARIPQESSGTKDITGGLPRVADLFEARRPKEPAILAEISGIISFGKETKGKRRLVI 1177 Query: 514 ------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS----------------LVNKI 407 + + E IP R L V G ++ ++ S + N++ Sbjct: 1178 SPLDGSDAYEEMIPKWRQLNVFEGEVVERGDVVSDGPESPHDILRLRGVHAVTRYITNEV 1237 Query: 406 QKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALD--- 236 Q+VYR QGV+I+++HIE+I+RQ+ K + + G ++ FL GE + R + A R L Sbjct: 1238 QEVYRLQGVKINDKHIEVIVRQMLRKGTIVDAGSTD-FLEGEQAEMSRVKIANRKLAAEG 1296 Query: 235 --ESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGG 62 E+ + R LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV++G Sbjct: 1297 KIEATFTRD-LLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGR 1355 Query: 61 IIPVGTGF 38 +IP GTG+ Sbjct: 1356 LIPAGTGY 1363
>RPOC_PELCD (Q3A6Q3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1396 Score = 124 bits (311), Expect = 3e-28 Identities = 85/254 (33%), Positives = 135/254 (53%), Gaps = 43/254 (16%) Frame = -3 Query: 661 EILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARS------IDSLSPNLERRIEDWNE 500 E + G L E +++ DIT GLP+V ++FEAR I + + + + Sbjct: 1100 ETVSGGAILAKIPRETTKTKDITGGLPRVAELFEARKPKEYAIISEIDGVVSFGKDSKGK 1159 Query: 499 RIPRI---LGVPWGFLI----------GAELTIAQSRIS--------------------L 419 R + +G P +LI G + ++ + L Sbjct: 1160 RKVHVTPEVGSPKEYLIPKGKHISVHEGDHIKAGEALMDGSSNPHDILRVLGEKELAKYL 1219 Query: 418 VNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL 239 V+++Q+VYR QGV+I+++HIE+I+RQ+ +VR+ E G + FL + + E R + Sbjct: 1220 VDEVQEVYRLQGVKINDKHIEVIVRQMLRRVRIKEPGNTR-FLADDQVERWEFECENRKV 1278 Query: 238 ----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVV 71 ++LGIT+ASL+T+SFIS ASFQET +VL +AA+ G+ID+L+GLKENV+ Sbjct: 1279 VGEGGAPAVGEPLMLGITKASLSTESFISAASFQETTKVLTQAAIEGKIDYLRGLKENVI 1338 Query: 70 LGGIIPVGTGFQKF 29 +G +IP GTG K+ Sbjct: 1339 MGRLIPAGTGISKY 1352
>RPOC_BRAJA (Q89J75) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1398 Score = 124 bits (311), Expect = 3e-28 Identities = 89/248 (35%), Positives = 130/248 (52%), Gaps = 46/248 (18%) Frame = -3 Query: 646 GDRLVTFKYEKSRSSDITQGLPKVEQIFEARSID------------------------SL 539 GD L E +++ DIT GLP+V ++FEAR S+ Sbjct: 1110 GDILARVSTESAKTRDITGGLPRVAELFEARRPKDAAIIAEIAGTIRFGRDYKNKRRISI 1169 Query: 538 SPNLERRIEDWNERIPR------------------ILGVPWGFLIGAELTIAQSRISLVN 413 P +++ E IP+ + G P I A I + LVN Sbjct: 1170 EP-MDKTDEPREYLIPKGKHIHLQDGDVVEKGDFIVEGNPAPHDILAVKGIEELAAYLVN 1228 Query: 412 KIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDE 233 +IQ+VYR QGV I+++HIE+I+RQ+ KV V++ G +++ + GE + + + E Sbjct: 1229 EIQEVYRLQGVLINDKHIEVIVRQMLQKVEVTDQGDTDM-ISGEQVDKIEFDALNEKAKE 1287 Query: 232 SIYYRA----ILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLG 65 A +LLGIT+ASL T+SF S ASFQET RVL +AA+ G++D L+GLKENV++G Sbjct: 1288 EGKKIATGTPVLLGITKASLQTRSFFSAASFQETTRVLTEAAVNGKVDPLEGLKENVIVG 1347 Query: 64 GIIPVGTG 41 +IP GTG Sbjct: 1348 RLIPAGTG 1355
>RPOC_WIGBR (Q8D232) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1405 Score = 124 bits (311), Expect = 3e-28 Identities = 95/251 (37%), Positives = 129/251 (51%), Gaps = 42/251 (16%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEAR------------SIDSLSPNLE- 524 G + GD L E S DIT GLP+V +FEAR I S + Sbjct: 1112 GTKINSGDVLARLSLETSGIKDITGGLPRVADLFEARRPKEPAILAEISGIISFGKETKG 1171 Query: 523 -RRI--------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS--------------- 422 RR+ + + E IP R L V G + I+ S Sbjct: 1172 KRRLVISPINGSDVYEEMIPKWRHLNVFEGERVEKGDVISDGPESPHDILRLRGVHAVTK 1231 Query: 421 -LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR 245 +VN++Q VYR QGV+I+++HIE+I+RQ+ K + +G + FL GE R A Sbjct: 1232 YIVNEVQDVYRLQGVKINDKHIEVIVRQMLKKATIL-NGSQSEFLEGEQTEFSRIRIANN 1290 Query: 244 ALDES--IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVV 71 S I Y LLGIT++SL T+SFIS ASFQET RVL ++A+ G+ID L+GLKENV+ Sbjct: 1291 NTKSSDKINYSRDLLGITKSSLATESFISAASFQETTRVLTESAVSGKIDELRGLKENVI 1350 Query: 70 LGGIIPVGTGF 38 +G +IP GTG+ Sbjct: 1351 VGRLIPAGTGY 1361
>RPOC_BORPE (Q7W0R8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1414 Score = 124 bits (311), Expect = 3e-28 Identities = 91/262 (34%), Positives = 132/262 (50%), Gaps = 43/262 (16%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE-------RRIEDW 506 G+ + G+ L E ++ DIT GLP+V ++FEARS E + Sbjct: 1112 GQQVAVGEVLARIPQESQKTRDITGGLPRVAELFEARSPKDAGMLAEVTGTVSFGKDTKG 1171 Query: 505 NER--IPRILGVPWGFLIGAELTIAQSRISLVNK-------------------------- 410 +R I + GV FLI E + +VNK Sbjct: 1172 KQRLVITDLEGVSHEFLILKEKQVLVHDGQVVNKGEMIVDGPADPHDILRLQGIEKLATY 1231 Query: 409 ----IQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG----LLRAER 254 +Q VYR QGV+I+++HIE+I+RQ+ +V + + G + F+PGE + L +R Sbjct: 1232 IVDEVQDVYRLQGVKINDKHIEVIVRQMLRRVNIVDPGDTE-FIPGEQVERSELLNENDR 1290 Query: 253 AGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 74 Y +LLGIT+ASL+T SFIS ASFQET RVL +AA+ G+ D L+GLKENV Sbjct: 1291 VVAEDKRPASYDNVLLGITKASLSTDSFISAASFQETTRVLTEAAIMGKRDDLRGLKENV 1350 Query: 73 VLGGIIPVGTGFQKFVHRSPQD 8 ++G +IP GTG + R ++ Sbjct: 1351 IVGRLIPAGTGLAYHIARKDKE 1372
>RPOC_BORPA (Q7W2G8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1414 Score = 124 bits (311), Expect = 3e-28 Identities = 91/262 (34%), Positives = 132/262 (50%), Gaps = 43/262 (16%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE-------RRIEDW 506 G+ + G+ L E ++ DIT GLP+V ++FEARS E + Sbjct: 1112 GQQVAVGEVLARIPQESQKTRDITGGLPRVAELFEARSPKDAGMLAEVTGTVSFGKDTKG 1171 Query: 505 NER--IPRILGVPWGFLIGAELTIAQSRISLVNK-------------------------- 410 +R I + GV FLI E + +VNK Sbjct: 1172 KQRLVITDLEGVSHEFLILKEKQVLVHDGQVVNKGEMIVDGPADPHDILRLQGIEKLATY 1231 Query: 409 ----IQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG----LLRAER 254 +Q VYR QGV+I+++HIE+I+RQ+ +V + + G + F+PGE + L +R Sbjct: 1232 IVDEVQDVYRLQGVKINDKHIEVIVRQMLRRVNIVDPGDTE-FIPGEQVERSELLNENDR 1290 Query: 253 AGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 74 Y +LLGIT+ASL+T SFIS ASFQET RVL +AA+ G+ D L+GLKENV Sbjct: 1291 VVAEDKRPASYDNVLLGITKASLSTDSFISAASFQETTRVLTEAAIMGKRDDLRGLKENV 1350 Query: 73 VLGGIIPVGTGFQKFVHRSPQD 8 ++G +IP GTG + R ++ Sbjct: 1351 IVGRLIPAGTGLAYHIARKDKE 1372
>RPOC_BORBR (Q7WRD8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1414 Score = 124 bits (311), Expect = 3e-28 Identities = 91/262 (34%), Positives = 132/262 (50%), Gaps = 43/262 (16%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE-------RRIEDW 506 G+ + G+ L E ++ DIT GLP+V ++FEARS E + Sbjct: 1112 GQQVAVGEVLARIPQESQKTRDITGGLPRVAELFEARSPKDAGMLAEVTGTVSFGKDTKG 1171 Query: 505 NER--IPRILGVPWGFLIGAELTIAQSRISLVNK-------------------------- 410 +R I + GV FLI E + +VNK Sbjct: 1172 KQRLVITDLEGVSHEFLILKEKQVLVHDGQVVNKGEMIVDGPADPHDILRLQGIEKLATY 1231 Query: 409 ----IQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG----LLRAER 254 +Q VYR QGV+I+++HIE+I+RQ+ +V + + G + F+PGE + L +R Sbjct: 1232 IVDEVQDVYRLQGVKINDKHIEVIVRQMLRRVNIVDPGDTE-FIPGEQVERSELLNENDR 1290 Query: 253 AGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 74 Y +LLGIT+ASL+T SFIS ASFQET RVL +AA+ G+ D L+GLKENV Sbjct: 1291 VVAEDKRPASYDNVLLGITKASLSTDSFISAASFQETTRVLTEAAIMGKRDDLRGLKENV 1350 Query: 73 VLGGIIPVGTGFQKFVHRSPQD 8 ++G +IP GTG + R ++ Sbjct: 1351 IVGRLIPAGTGLAYHIARKDKE 1372
>RPOC_MYCTU (P0A674) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1316 Score = 124 bits (311), Expect = 3e-28 Identities = 67/138 (48%), Positives = 92/138 (66%), Gaps = 4/138 (2%) Frame = -3 Query: 430 RISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 251 +I LV ++Q+VYR+QGV IH++HIE+I+RQ+ +V + + G S FLPG LI E Sbjct: 1131 QIHLVREVQEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSG-STEFLPGSLIDRAEFEAE 1189 Query: 250 GRAL----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLK 83 R + E R +L+GIT+ASL T S++S ASFQET RVL AA+ R D L GLK Sbjct: 1190 NRRVVAEGGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLK 1249 Query: 82 ENVVLGGIIPVGTGFQKF 29 ENV++G +IP GTG ++ Sbjct: 1250 ENVIIGKLIPAGTGINRY 1267
>RPOC_MYCBO (P0A675) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1316 Score = 124 bits (311), Expect = 3e-28 Identities = 67/138 (48%), Positives = 92/138 (66%), Gaps = 4/138 (2%) Frame = -3 Query: 430 RISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 251 +I LV ++Q+VYR+QGV IH++HIE+I+RQ+ +V + + G S FLPG LI E Sbjct: 1131 QIHLVREVQEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSG-STEFLPGSLIDRAEFEAE 1189 Query: 250 GRAL----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLK 83 R + E R +L+GIT+ASL T S++S ASFQET RVL AA+ R D L GLK Sbjct: 1190 NRRVVAEGGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLK 1249 Query: 82 ENVVLGGIIPVGTGFQKF 29 ENV++G +IP GTG ++ Sbjct: 1250 ENVIIGKLIPAGTGINRY 1267
>RPOC_MANSM (Q65W40) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1420 Score = 124 bits (311), Expect = 3e-28 Identities = 93/246 (37%), Positives = 133/246 (54%), Gaps = 43/246 (17%) Frame = -3 Query: 646 GDRLVTFKYEKSRSSDITQGLPKVEQIFEARS------------IDSLSPNLE--RRI-- 515 G+ L E + DIT GLP+V +FEAR I S + RR+ Sbjct: 1119 GEPLARIPQESVGTKDITGGLPRVADLFEARKPKEPAILAEITGIVSFGKETKGKRRLVI 1178 Query: 514 -----EDWNERIP--RILGVPWGFLI--------GAELTIAQSRIS--------LVNKIQ 404 E + E IP R L V G ++ GAE R+ +VN++Q Sbjct: 1179 TPVEGEAYEEMIPKWRQLNVFEGEMVERGDVISDGAETPHDILRLRGVHAVTEYIVNEVQ 1238 Query: 403 KVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES-- 230 +VYR QGV+I+++HIE+I+RQ+ K +++ + FL GE + + R + R + Sbjct: 1239 EVYRLQGVKINDKHIEVIVRQMLRKGIITK-AYDSEFLEGEQVEVARVKIVNRKREAEGK 1297 Query: 229 --IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGII 56 + + LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV++G +I Sbjct: 1298 PPVEFERELLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLI 1357 Query: 55 PVGTGF 38 P GTGF Sbjct: 1358 PAGTGF 1363
>RPOC_CORJK (Q4JT33) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1323 Score = 124 bits (311), Expect = 3e-28 Identities = 66/135 (48%), Positives = 93/135 (68%), Gaps = 4/135 (2%) Frame = -3 Query: 421 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELI----GLLRAER 254 L+N++QKVYR QGV IH++HIEII+RQ+ +V V + G S FLPG L+ + ++ Sbjct: 1142 LINEVQKVYRDQGVAIHDKHIEIIVRQMLRRVTVIDSG-STEFLPGSLVDHADAVAASKE 1200 Query: 253 AGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 74 A + + RA ++GIT+ASL T+S++S ASFQET RVL AA+ R D L GLKENV Sbjct: 1201 AVKTGGRPVEVRAEIMGITKASLATESWLSAASFQETTRVLTDAAINKRSDKLIGLKENV 1260 Query: 73 VLGGIIPVGTGFQKF 29 ++G +IP GTG ++ Sbjct: 1261 IIGKLIPAGTGISRY 1275
>RPOC_BACLD (Q65PB4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1199 Score = 124 bits (310), Expect = 3e-28 Identities = 87/244 (35%), Positives = 129/244 (52%), Gaps = 43/244 (17%) Frame = -3 Query: 631 TFKYEKSRSSDITQGLPKVEQIFEARS---------IDSL-------------------- 539 TF DITQGLP+++++FEAR+ ID + Sbjct: 938 TFHTGGVAGDDITQGLPRIQELFEARNPKGQATISEIDGVVAEINEVRDKQQEIVVQGEV 997 Query: 538 ------SPNLERRIEDWNERIPRILGVPWGFLIGAELT----IAQSRISLVNKIQKVYRS 389 +P R E+I R + G + EL I + L++++QKVYR Sbjct: 998 ESRSYTAPYNARLKVTEGEKISRGQVLTEGSVDPKELLKVTDITTVQEYLLHEVQKVYRM 1057 Query: 388 QGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYY 221 QGV+I ++H+E+++RQ+ KVRV + G + V LPG L+ + + A + + Sbjct: 1058 QGVEIGDKHVEVMVRQMLRKVRVIDAGDTEV-LPGTLLDIHQFTEANKKVLLEGKRPATG 1116 Query: 220 RAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTG 41 R +LLGIT+ASL T SF+S ASFQET RVL AA++G+ D L GLKENV++G ++P GTG Sbjct: 1117 RPVLLGITKASLETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTG 1176 Query: 40 FQKF 29 + Sbjct: 1177 MLNY 1180
>RPOC_RHIME (Q92QH6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1401 Score = 124 bits (310), Expect = 3e-28 Identities = 89/253 (35%), Positives = 135/253 (53%), Gaps = 45/253 (17%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARS------IDSLSPNL-------- 527 G+ + +GD L E +++ DIT GLP+V ++FEAR I + + Sbjct: 1105 GQKVSQGDVLARSPLESAKTKDITGGLPRVAELFEARRPKDHAIIAEIDGTIRFGRDYKN 1164 Query: 526 ERRI-----EDWNERIPRIL----------------------GVPWGFLIGAELTIAQSR 428 +RR+ ED E + ++ G P I A + Sbjct: 1165 KRRVMIEPAEDGVEPVEYLIPKGKPFHLQDGDYIEKGDYILDGNPAPHDILAIKGVEALA 1224 Query: 427 ISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAG 248 LVN+IQ+VYR QGV I+++HIE+I+RQ+ KV +++ G S ++ G+ + + E Sbjct: 1225 SYLVNEIQEVYRLQGVVINDKHIEVIVRQMLQKVEITDAGDST-YIVGDNVDRIELEDVN 1283 Query: 247 RAL----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKE 80 +L + + +LLGIT+ASL T SFIS ASFQET +VL +AA+ G+ D L+GLKE Sbjct: 1284 DSLLAEGKKPAFGEPVLLGITKASLQTPSFISAASFQETTKVLTEAAVAGKTDNLQGLKE 1343 Query: 79 NVVLGGIIPVGTG 41 NV++G +IP GTG Sbjct: 1344 NVIVGRLIPAGTG 1356
>RPOC_XYLFT (Q87A33) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 124 bits (310), Expect = 3e-28 Identities = 97/251 (38%), Positives = 128/251 (50%), Gaps = 49/251 (19%) Frame = -3 Query: 646 GDRLVTFKYEKSRSSDITQGLPKVEQIFEAR---------------SIDSLSPNLERRI- 515 GD + E S++ DIT GLP+V +FEAR S + +R I Sbjct: 1119 GDVVAKIPQEASKTRDITGGLPRVADLFEARRPKDPAILAERSGVISFGKDTKGKQRLII 1178 Query: 514 -----EDWNERIPR------------------ILGVPWGFLIGAELTIAQSRISLVNKIQ 404 + E IP+ + G P I L I LV +IQ Sbjct: 1179 KDADGSEHEELIPKYRQIIVFEGEHVTKGETIVDGEPSPQDILRLLGIEPLAAYLVKEIQ 1238 Query: 403 KVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIY 224 VYR QGV+I+++HIE+I RQ+ KV + + G S FL GE + ER R +DE+ Sbjct: 1239 DVYRLQGVKINDKHIEVITRQMLRKVEIVDQGNSK-FLNGEQV-----ERQ-RVIDENAK 1291 Query: 223 ----------YRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 74 Y +LLGIT+ASL T+SFIS ASFQET RVL +AA+RG D L+GLKENV Sbjct: 1292 LIARNELPAKYNPVLLGITKASLATESFISAASFQETTRVLTEAAVRGTRDNLRGLKENV 1351 Query: 73 VLGGIIPVGTG 41 ++G +IP GTG Sbjct: 1352 IVGRLIPAGTG 1362
>RPOC_XYLFA (Q9PA87) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 124 bits (310), Expect = 3e-28 Identities = 97/251 (38%), Positives = 128/251 (50%), Gaps = 49/251 (19%) Frame = -3 Query: 646 GDRLVTFKYEKSRSSDITQGLPKVEQIFEAR---------------SIDSLSPNLERRI- 515 GD + E S++ DIT GLP+V +FEAR S + +R I Sbjct: 1119 GDVVAKIPQEASKTRDITGGLPRVADLFEARRPKDPAILAERSGVISFGKDTKGKQRLII 1178 Query: 514 -----EDWNERIPR------------------ILGVPWGFLIGAELTIAQSRISLVNKIQ 404 + E IP+ + G P I L I LV +IQ Sbjct: 1179 KDADGSEHEELIPKYRQIIVFEGEHVTKGETIVDGEPSPQDILRLLGIEPLAAYLVKEIQ 1238 Query: 403 KVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIY 224 VYR QGV+I+++HIE+I RQ+ KV + + G S FL GE + ER R +DE+ Sbjct: 1239 DVYRLQGVKINDKHIEVITRQMLRKVEIVDQGNSK-FLNGEQV-----ERQ-RVIDENAK 1291 Query: 223 ----------YRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 74 Y +LLGIT+ASL T+SFIS ASFQET RVL +AA+RG D L+GLKENV Sbjct: 1292 LIARNELPAKYNPVLLGITKASLATESFISAASFQETTRVLTEAAVRGTRDNLRGLKENV 1351 Query: 73 VLGGIIPVGTG 41 ++G +IP GTG Sbjct: 1352 IVGRLIPAGTG 1362
>RPOBC_WOLPM (Q73IW9) Bifunctional DNA-directed RNA polymerase, beta and beta'| chain (EC 2.7.7.6) [Includes: DNA-directed RNA polymerase beta chain (Transcriptase beta chain) (RNA polymerase beta subunit); DNA-directed RNA polymerase beta' chain (Transcri Length = 2837 Score = 123 bits (309), Expect = 4e-28 Identities = 90/259 (34%), Positives = 129/259 (49%), Gaps = 51/259 (19%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEAR---------SIDSLSPNLER--- 521 G+ ++ GD + E ++ DIT GLP+V ++FEAR ID E+ Sbjct: 2531 GQKVHAGDVITRTPRESVKTRDITGGLPRVIELFEARRPKEHAIVSEIDGYVAFSEKDRR 2590 Query: 520 -----RIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNK------------------ 410 I+ +E+I P +L+ + + V K Sbjct: 2591 GKRSILIKPVDEQIS-----PVEYLVSRSKHVIVNESDFVRKGDLLMDGDPDLHDILRVL 2645 Query: 409 ------------IQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLL 266 IQ+VYR QGV+I N+H+E+I++Q+ KV +++ G ++L GE I L Sbjct: 2646 GLEALAHYMISEIQQVYRLQGVRIDNKHLEVILKQMLQKVEITDPG-DTMYLVGESIDKL 2704 Query: 265 RAERAGRALDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDW 98 +R A+ S +Y IL GITRASL T SFIS ASFQET +VL +AA G+ D Sbjct: 2705 EVDRENDAMSNSGKRPTHYLPILQGITRASLETSSFISAASFQETTKVLTEAAFCGKSDP 2764 Query: 97 LKGLKENVVLGGIIPVGTG 41 L GLKENV++G +IP GTG Sbjct: 2765 LSGLKENVIVGRLIPAGTG 2783
>RPOC_XANOR (Q8KTH8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1405 Score = 123 bits (309), Expect = 4e-28 Identities = 95/245 (38%), Positives = 127/245 (51%), Gaps = 43/245 (17%) Frame = -3 Query: 646 GDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERR----------------I 515 GD + E S++ DIT GLP+V +FEAR + ER I Sbjct: 1120 GDVVAKIPQEASKTRDITGGLPRVADLFEARKPKDPAILAERSGIISFGKDTKGKQRLII 1179 Query: 514 EDWN-----ERIPR------------------ILGVPWGFLIGAELTIAQSRISLVNKIQ 404 +D + E IP+ + G P I L + LV +IQ Sbjct: 1180 KDTDGSEHEELIPKYRQIIVFEGEHVTKGETVVDGEPSPQDILRLLGVEPLAAYLVKEIQ 1239 Query: 403 KVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRA-ERAGRALDES- 230 VYR QGV+I+++HIE+I RQ+ KV + + G S FL GE + R E R + + Sbjct: 1240 DVYRLQGVKINDKHIEVITRQMLRKVEIVDQGNSK-FLNGEQVERQRVIEENARLVKRNE 1298 Query: 229 --IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGII 56 Y +LLGIT+ASL T+SFIS ASFQET RVL +AA+RG D L+GLKENV++G +I Sbjct: 1299 LPAKYDPVLLGITKASLATESFISAASFQETTRVLTEAAVRGTRDNLRGLKENVIVGRLI 1358 Query: 55 PVGTG 41 P GTG Sbjct: 1359 PAGTG 1363
>RPOC_XANC5 (Q3BWZ0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1404 Score = 123 bits (309), Expect = 4e-28 Identities = 95/245 (38%), Positives = 127/245 (51%), Gaps = 43/245 (17%) Frame = -3 Query: 646 GDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERR----------------I 515 GD + E S++ DIT GLP+V +FEAR + ER I Sbjct: 1119 GDVVAKIPQEASKTRDITGGLPRVADLFEARKPKDPAILAERSGIISFGKDTKGKQRLII 1178 Query: 514 EDWN-----ERIPR------------------ILGVPWGFLIGAELTIAQSRISLVNKIQ 404 +D + E IP+ + G P I L + LV +IQ Sbjct: 1179 KDTDGSEHEELIPKYRQIIVFEGEHVTKGETVVDGEPSPQDILRLLGVEPLAAYLVKEIQ 1238 Query: 403 KVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRA-ERAGRALDES- 230 VYR QGV+I+++HIE+I RQ+ KV + + G S FL GE + R E R + + Sbjct: 1239 DVYRLQGVKINDKHIEVITRQMLRKVEIVDQGNSK-FLNGEQVERQRVIEENARLVKRNE 1297 Query: 229 --IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGII 56 Y +LLGIT+ASL T+SFIS ASFQET RVL +AA+RG D L+GLKENV++G +I Sbjct: 1298 LPAKYDPVLLGITKASLATESFISAASFQETTRVLTEAAVRGTRDNLRGLKENVIVGRLI 1357 Query: 55 PVGTG 41 P GTG Sbjct: 1358 PAGTG 1362
>RPOC_XANAC (Q8PNS9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1404 Score = 123 bits (309), Expect = 4e-28 Identities = 95/245 (38%), Positives = 127/245 (51%), Gaps = 43/245 (17%) Frame = -3 Query: 646 GDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERR----------------I 515 GD + E S++ DIT GLP+V +FEAR + ER I Sbjct: 1119 GDVVAKIPQEASKTRDITGGLPRVADLFEARKPKDPAILAERSGIISFGKDTKGKQRLII 1178 Query: 514 EDWN-----ERIPR------------------ILGVPWGFLIGAELTIAQSRISLVNKIQ 404 +D + E IP+ + G P I L + LV +IQ Sbjct: 1179 KDTDGSEHEELIPKYRQIIVFEGEHVTKGETVVDGEPSPQDILRLLGVEPLAAYLVKEIQ 1238 Query: 403 KVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRA-ERAGRALDES- 230 VYR QGV+I+++HIE+I RQ+ KV + + G S FL GE + R E R + + Sbjct: 1239 DVYRLQGVKINDKHIEVITRQMLRKVEIVDQGNSK-FLNGEQVERQRVIEENARLVKRNE 1297 Query: 229 --IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGII 56 Y +LLGIT+ASL T+SFIS ASFQET RVL +AA+RG D L+GLKENV++G +I Sbjct: 1298 LPAKYDPVLLGITKASLATESFISAASFQETTRVLTEAAVRGTRDNLRGLKENVIVGRLI 1357 Query: 55 PVGTG 41 P GTG Sbjct: 1358 PAGTG 1362
>RPOC_BACSU (P37871) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1199 Score = 123 bits (309), Expect = 4e-28 Identities = 86/246 (34%), Positives = 129/246 (52%), Gaps = 45/246 (18%) Frame = -3 Query: 631 TFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE--------RRIED----------- 509 TF DITQGLP+++++FEAR+ + E + D Sbjct: 938 TFHTGGVAGDDITQGLPRIQELFEARNPKGQATITEIDGTVVEINEVRDKQQEIVVQGAV 997 Query: 508 --------WNERIPRILGV--------------PWGFLIGAELTIAQSRISLVNKIQKVY 395 +N R+ G P L +LT Q L++++QKVY Sbjct: 998 ETRSYTAPYNSRLKVAEGDKITRGQVLTGGSIDPKELLKVTDLTTVQEY--LLHEVQKVY 1055 Query: 394 RSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESI 227 R QGV+I ++H+E+++RQ+ KVRV + G ++V LPG L+ + + A + + + Sbjct: 1056 RMQGVEIGDKHVEVMVRQMLRKVRVIDAGDTDV-LPGTLLDIHQFTEANKKVLLEGNRPA 1114 Query: 226 YYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVG 47 R +LLGIT+ASL T SF+S ASFQET RVL AA++G+ D L GLKENV++G ++P G Sbjct: 1115 TGRPVLLGITKASLETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENVIIGKLVPGG 1174 Query: 46 TGFQKF 29 T K+ Sbjct: 1175 TAMMKY 1180
>RPOC_BURS3 (Q39KH4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1414 Score = 123 bits (309), Expect = 4e-28 Identities = 92/257 (35%), Positives = 134/257 (52%), Gaps = 49/257 (19%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE-------RRIEDW 506 G+ + G+ L E ++ DIT GLP+V ++FEARS E + Sbjct: 1119 GQQVQVGEVLARIPTEAQKTRDITGGLPRVAELFEARSPKDAGILAEVTGTTSFGKDTKG 1178 Query: 505 NER--IPRILGVPWGFLIGAELTIAQSRISLVNK-------------------------- 410 +R I + G FLI E + +VNK Sbjct: 1179 KQRLVITDLEGNQHEFLIAKEKQVLVHDAQVVNKGEMIVDGPADPHDILRLQGIEALSRY 1238 Query: 409 ----IQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 242 +Q VYR QGV+I+++HIE+I+RQ+ +V+++++G + F+PGE + ER+ Sbjct: 1239 IVDEVQDVYRLQGVKINDKHIEVIVRQMLRRVQITDNGDTR-FIPGEQV-----ERSDM- 1291 Query: 241 LDES----------IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLK 92 LDE+ Y +LLGIT+ASL+T SFIS ASFQET RVL +AA+ G+ D L+ Sbjct: 1292 LDENDRMIAEDKRPASYDNVLLGITKASLSTDSFISAASFQETTRVLTEAAIMGKRDDLR 1351 Query: 91 GLKENVVLGGIIPVGTG 41 GLKENV++G +IP GTG Sbjct: 1352 GLKENVIVGRLIPAGTG 1368
>RPOC_EHRCJ (Q3YST4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1410 Score = 123 bits (308), Expect = 6e-28 Identities = 89/255 (34%), Positives = 131/255 (51%), Gaps = 46/255 (18%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEAR--SIDSLSPNLERRIE---DWNE 500 G+ ++ GD + E ++ DIT GLP+V ++FEAR ++ +++ +E D+ Sbjct: 1106 GQKVHAGDVITRIPRESIKTRDITGGLPRVIELFEARRPKEHAIVSDIDGYVEFGKDYYR 1165 Query: 499 RIPRILGVPW-GFLIGAELTIAQSRISLVN------------------------------ 413 RI P L E + + + ++VN Sbjct: 1166 SKRRIFIKPVDDKLTPVEYLVPKGKHTIVNEGDFVHKGDLLMDGDPDPHDILRVLGVEAL 1225 Query: 412 ------KIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 251 +IQ+VYR QGV+I N+HIEII+RQ+ KV + E G ++L GE I + + Sbjct: 1226 ANYMISEIQQVYRLQGVRIDNKHIEIILRQMLQKVEIFEPG-DTMYLVGENIDMEEVIKT 1284 Query: 250 GRAL----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLK 83 ++ Y IL GITRASL+T SF+S ASFQET +VL +AA G+ D L GLK Sbjct: 1285 NNSMVKMGKSPAKYAPILQGITRASLDTNSFVSAASFQETTKVLTEAAFSGKEDSLYGLK 1344 Query: 82 ENVVLGGIIPVGTGF 38 ENV++G +IP GTGF Sbjct: 1345 ENVIVGRLIPAGTGF 1359
>RPOBC_WOLTR (Q5GRY9) Bifunctional DNA-directed RNA polymerase, beta and beta'| chain (EC 2.7.7.6) [Includes: DNA-directed RNA polymerase beta chain (Transcriptase beta chain) (RNA polymerase beta subunit); DNA-directed RNA polymerase beta' chain (Transcri Length = 2839 Score = 122 bits (306), Expect = 1e-27 Identities = 91/254 (35%), Positives = 132/254 (51%), Gaps = 46/254 (18%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEAR---------SIDS--LSPNLERR 518 G+ ++ GD + E ++ DIT GLP+V ++FEAR ID + +RR Sbjct: 2534 GQKVHAGDVITRTPRESVKTRDITGGLPRVIELFEARRPREHAIVSEIDGHVVFSEKDRR 2593 Query: 517 ------IEDWNERIPRIL-------------------------GVPWGFLIGAELTIAQS 431 I+ NE+I I G P I L + Sbjct: 2594 GKRSVLIKPLNEQISPIEYLVSRSKHVIVNEGDFVRKGDLLMDGDPDLHDILRVLGLEAL 2653 Query: 430 RISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 251 ++++IQ+VYR QGV+I N+H+E+I++Q+ KV +++ G ++L GE I L ++ Sbjct: 2654 AHYMISEIQQVYRLQGVRIDNKHLEVILKQMLQKVEITDPG-DTMYLVGESIDKLEVDKG 2712 Query: 250 GRALDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLK 83 + S Y IL GITRASL T+SFIS ASFQET +VL +AA G+ D L GLK Sbjct: 2713 NDVMSNSGKRPACYLPILQGITRASLETKSFISAASFQETTKVLTEAAFCGKEDPLSGLK 2772 Query: 82 ENVVLGGIIPVGTG 41 ENV++G +IP GTG Sbjct: 2773 ENVIVGRLIPAGTG 2786
>RPOC_DESDG (Q30X04) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1386 Score = 122 bits (306), Expect = 1e-27 Identities = 92/258 (35%), Positives = 140/258 (54%), Gaps = 44/258 (17%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEAR---------SIDSL-----SPNL 527 G+ + GD + E S++ DI GLP+V ++FE R ID + Sbjct: 1102 GQEITAGDIIARKPRESSKTKDIVGGLPRVAELFEVRKPKDMAVVSQIDGIVTFAGETKG 1161 Query: 526 ERRI----EDWNER---IP--RILGVPWGFLIGAELTIAQSRISL--------------- 419 +R++ E +E+ +P + + V G + A + + L Sbjct: 1162 KRKLVVTPETGDEKEYLVPKGKHITVTDGDFVEAGEMLTEGHPELHDILGVKGEKYLANY 1221 Query: 418 -VNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELI--GLLRAERAG 248 V +IQ VYR QGV I ++HIE+I+RQ+ KV V + G ++ FL GE + R E Sbjct: 1222 LVEEIQDVYRFQGVGIDDKHIEVIVRQMLKKVTVLDPGQTS-FLVGEQVDKAEFRIENQ- 1279 Query: 247 RALDES---IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKEN 77 +A++E ++LGIT+ASL T SFIS ASFQET +VL +A+LRG+ D L+GLKEN Sbjct: 1280 KAIEEGRTPATAEPLVLGITQASLTTSSFISAASFQETTKVLTEASLRGKNDHLRGLKEN 1339 Query: 76 VVLGGIIPVGTGFQKFVH 23 V++G +IP GTG++++VH Sbjct: 1340 VIVGRLIPAGTGYREYVH 1357
>RPOC_SYMTH (Q67JT4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1179 Score = 122 bits (305), Expect = 1e-27 Identities = 87/243 (35%), Positives = 130/243 (53%), Gaps = 42/243 (17%) Frame = -3 Query: 631 TFKYEKSRSSDITQGLPKVEQIFEARSI--DSLSPNLERRIEDWNERIPRIL-------- 482 TF DITQGLP+VE++FEAR ++ L+ + ++ R + Sbjct: 917 TFHTGGVAGDDITQGLPRVEELFEARKPKGQAIIAELDGEVSITEQKGRREITITSEDGE 976 Query: 481 ----GVPWGFLI----------GAELT--------------IAQSRISLVNKIQKVYRSQ 386 +P+G + G ELT + + L+ ++QKVY Q Sbjct: 977 SVTYSIPYGARVKVRSGQFVEAGDELTEGSVNPHDLLRVKGLRGVQRYLLREVQKVYNLQ 1036 Query: 385 GVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAG-RALDES---IYYR 218 GV I+++HIEI++RQ+ KV+V + G +++ LPG + + E R + E R Sbjct: 1037 GVDINDKHIEIMVRQMLRKVKVEDPGDTDL-LPGGFVDIFDFEDENERVIMEGGVPAVAR 1095 Query: 217 AILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGF 38 +LLGIT+ASL T SF+S ASFQET RVL AA++G+ D L GLKENV++G +IP GTG Sbjct: 1096 PMLLGITKASLATDSFLSAASFQETTRVLTDAAIKGKRDPLLGLKENVIIGKLIPAGTGM 1155 Query: 37 QKF 29 ++ Sbjct: 1156 GRY 1158
>RPOC_THIDA (Q3SLQ5) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1398 Score = 122 bits (305), Expect = 1e-27 Identities = 91/251 (36%), Positives = 130/251 (51%), Gaps = 43/251 (17%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE-------RRIEDW 506 G+ + GD L E S++ DIT GLP+V ++FEARS E + Sbjct: 1113 GQDVAVGDVLARIPQETSKTRDITGGLPRVAELFEARSPKDAGVLAEVTGTVSFGKDTKG 1172 Query: 505 NER--IPRILGVPWGFLIGAELTIAQSRISLVNK-------------------------- 410 +R I + GV +LI E + +V K Sbjct: 1173 KQRLVITDLDGVAHEYLITKEKHVTAHDGQIVQKGEMIVDGPVDPHDILRLQGVEALASY 1232 Query: 409 ----IQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG----LLRAER 254 +Q VYR QGV+I+++HIE+I+RQ+ +V V++ G + + +PGE + L + Sbjct: 1233 ITDEVQDVYRLQGVKINDKHIEVIVRQMLRRVVVADPGDTGL-IPGEQVERSEVLQINDE 1291 Query: 253 AGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 74 A E Y ILLGIT+ASL+T SFIS ASFQET RVL +AA+ G+ D L+GLKENV Sbjct: 1292 MIAAGKEPAVYDPILLGITKASLSTDSFISAASFQETTRVLTEAAIMGKKDELRGLKENV 1351 Query: 73 VLGGIIPVGTG 41 ++G +IP G+G Sbjct: 1352 IVGRLIPAGSG 1362
>RPOC_BURPS (Q63Q04) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1412 Score = 122 bits (305), Expect = 1e-27 Identities = 91/257 (35%), Positives = 136/257 (52%), Gaps = 49/257 (19%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARS------IDSLSPNLERRIEDWN 503 G+ + G+ L E ++ DIT GLP+V ++FEARS + ++ + + Sbjct: 1119 GQQVQVGEVLARIPTESQKTRDITGGLPRVAELFEARSPKDAGILAEVTGTVSFGKDTKG 1178 Query: 502 ER---IPRILGVPWGFLIGAELTIAQSRISLVNK-------------------------- 410 ++ I + G FLI E + +VNK Sbjct: 1179 KQRLVITDLEGNQHEFLIAKEKQVLVHDGQVVNKGEMIVDGPADPHDILRLQGIEALSRY 1238 Query: 409 ----IQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 242 +Q VYR QGV+I+++HIE+I+RQ+ +V++ ++G + F+PGE + ER+ Sbjct: 1239 IVDEVQDVYRLQGVKINDKHIEVIVRQMLRRVQIVDNGDTR-FIPGE-----QVERSD-M 1291 Query: 241 LDES----------IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLK 92 LDE+ Y ILLGIT+ASL+T SFIS ASFQET RVL +AA+ G+ D L+ Sbjct: 1292 LDENDRMIAEDKRPATYDNILLGITKASLSTDSFISAASFQETTRVLTEAAIMGKRDDLR 1351 Query: 91 GLKENVVLGGIIPVGTG 41 GLKENV++G +IP GTG Sbjct: 1352 GLKENVIVGRLIPAGTG 1368
>RPOC_BURP1 (Q3JMQ4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1412 Score = 122 bits (305), Expect = 1e-27 Identities = 91/257 (35%), Positives = 136/257 (52%), Gaps = 49/257 (19%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARS------IDSLSPNLERRIEDWN 503 G+ + G+ L E ++ DIT GLP+V ++FEARS + ++ + + Sbjct: 1119 GQQVQVGEVLARIPTESQKTRDITGGLPRVAELFEARSPKDAGILAEVTGTVSFGKDTKG 1178 Query: 502 ER---IPRILGVPWGFLIGAELTIAQSRISLVNK-------------------------- 410 ++ I + G FLI E + +VNK Sbjct: 1179 KQRLVITDLEGNQHEFLIAKEKQVLVHDGQVVNKGEMIVDGPADPHDILRLQGIEALSRY 1238 Query: 409 ----IQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 242 +Q VYR QGV+I+++HIE+I+RQ+ +V++ ++G + F+PGE + ER+ Sbjct: 1239 IVDEVQDVYRLQGVKINDKHIEVIVRQMLRRVQIVDNGDTR-FIPGE-----QVERSD-M 1291 Query: 241 LDES----------IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLK 92 LDE+ Y ILLGIT+ASL+T SFIS ASFQET RVL +AA+ G+ D L+ Sbjct: 1292 LDENDRMIAEDKRPATYDNILLGITKASLSTDSFISAASFQETTRVLTEAAIMGKRDDLR 1351 Query: 91 GLKENVVLGGIIPVGTG 41 GLKENV++G +IP GTG Sbjct: 1352 GLKENVIVGRLIPAGTG 1368
>RPOC_BURMA (Q62GJ7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1412 Score = 122 bits (305), Expect = 1e-27 Identities = 91/257 (35%), Positives = 136/257 (52%), Gaps = 49/257 (19%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARS------IDSLSPNLERRIEDWN 503 G+ + G+ L E ++ DIT GLP+V ++FEARS + ++ + + Sbjct: 1119 GQQVQVGEVLARIPTESQKTRDITGGLPRVAELFEARSPKDAGILAEVTGTVSFGKDTKG 1178 Query: 502 ER---IPRILGVPWGFLIGAELTIAQSRISLVNK-------------------------- 410 ++ I + G FLI E + +VNK Sbjct: 1179 KQRLVITDLEGNQHEFLIAKEKQVLVHDGQVVNKGEMIVDGPADPHDILRLQGIEALSRY 1238 Query: 409 ----IQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 242 +Q VYR QGV+I+++HIE+I+RQ+ +V++ ++G + F+PGE + ER+ Sbjct: 1239 IVDEVQDVYRLQGVKINDKHIEVIVRQMLRRVQIVDNGDTR-FIPGE-----QVERSD-M 1291 Query: 241 LDES----------IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLK 92 LDE+ Y ILLGIT+ASL+T SFIS ASFQET RVL +AA+ G+ D L+ Sbjct: 1292 LDENDRMIAEDKRPATYDNILLGITKASLSTDSFISAASFQETTRVLTEAAIMGKRDDLR 1351 Query: 91 GLKENVVLGGIIPVGTG 41 GLKENV++G +IP GTG Sbjct: 1352 GLKENVIVGRLIPAGTG 1368
>RPOC_IDILO (Q5QWA4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1411 Score = 122 bits (305), Expect = 1e-27 Identities = 94/250 (37%), Positives = 134/250 (53%), Gaps = 47/250 (18%) Frame = -3 Query: 646 GDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE--------------RRI-- 515 GD L E S++ DIT GLP+V +FEAR + E RR+ Sbjct: 1118 GDTLARIPQEGSKTRDITGGLPRVADLFEARKPKEPAILAEKTGTVSFGKETKGKRRLLI 1177 Query: 514 ------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS----------------LVNKI 407 + E IP R L V G + IA + +VN++ Sbjct: 1178 TPTDGGDQHEEMIPKWRQLNVFEGEQVTKGEVIADGPEAPHDILRLRGVSAVANYIVNEV 1237 Query: 406 QKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGL-------LRAERAG 248 Q+VYR QGV+I+++HIE I+RQ+ K + G +N+ L GE++ + +AE G Sbjct: 1238 QEVYRLQGVKINDKHIETIVRQMLRKALILRAGDTNL-LEGEMVEMSEVLAANAKAEADG 1296 Query: 247 RALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVL 68 + +I+ R LLGIT+ASL+T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV++ Sbjct: 1297 KK--PAIFERQ-LLGITKASLSTESFISAASFQETTRVLTEAAVGGKKDSLRGLKENVIV 1353 Query: 67 GGIIPVGTGF 38 G +IP GTG+ Sbjct: 1354 GRLIPAGTGY 1363
>RPOC_BUCBP (Q89B21) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1404 Score = 121 bits (304), Expect = 2e-27 Identities = 92/247 (37%), Positives = 129/247 (52%), Gaps = 44/247 (17%) Frame = -3 Query: 646 GDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE--------------RRI-- 515 GD L E + DIT GLP+V +FEAR L+ E RR+ Sbjct: 1118 GDTLARIPQESGGTKDITGGLPRVADLFEARRPKELAILAEISGFISFGKDTKGKRRLII 1177 Query: 514 ------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS----------------LVNKI 407 + E IP R L V G + I+ S ++N++ Sbjct: 1178 TPYNNNTPYEEMIPKWRQLNVFEGERVEKGDVISDGPESPHDILRLRGVQAVTKYIINEV 1237 Query: 406 QKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESI 227 Q+VYR QGV+I+++HIE+IIRQ+ K + + S FL GE + R + + R L + Sbjct: 1238 QEVYRLQGVKINDKHIEVIIRQMLRKATIIKSEHSE-FLDGEQVEYSRIKVSNRNLSKIG 1296 Query: 226 YYRAI----LLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGI 59 AI LLGIT+ASL T+SFIS ASFQET RVL ++++ G+ D L+GLKENV++G + Sbjct: 1297 KKTAIFSRDLLGITKASLATESFISAASFQETTRVLTESSVAGKKDELRGLKENVIVGRL 1356 Query: 58 IPVGTGF 38 IP GTG+ Sbjct: 1357 IPAGTGY 1363
>RPOC_LEGPH (Q5ZYP9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1401 Score = 121 bits (304), Expect = 2e-27 Identities = 95/252 (37%), Positives = 137/252 (54%), Gaps = 43/252 (17%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE------------- 524 G ++ GD + E+S++ DIT GLP+V +FEAR + E Sbjct: 1106 GSLVGIGDVIARIPQERSKTRDITGGLPRVADLFEARKPKDSAVMAEVSGLVNFGKETKG 1165 Query: 523 -RRI-----EDW--NERIP--RILGVPWGFLIGAELTIAQSRIS---------------- 422 RR+ ED E IP R + V G + IA+ ++ Sbjct: 1166 KRRLIINVSEDQCHEELIPKWRHISVFEGEHVERGEIIAEGALNPHDILRLLGVGALANY 1225 Query: 421 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELI---GLLRAERA 251 +VN++Q VYR QGV+I+++HIE+I+RQ+ K ++ G S FL GE + +L+ Sbjct: 1226 IVNEVQDVYRLQGVKINDKHIEVIVRQMLRKRVITFAGDSK-FLVGEQVEESAMLQENDK 1284 Query: 250 GRALDESIYYRA-ILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 74 A + I ILLGIT+ASL T+SFIS ASFQET RVL +AA+ G++D L+GLKENV Sbjct: 1285 LLAEGKQIARGTPILLGITKASLATESFISAASFQETTRVLTEAAVSGKVDELRGLKENV 1344 Query: 73 VLGGIIPVGTGF 38 ++G +IP GTG+ Sbjct: 1345 MVGRLIPAGTGY 1356
>RPOC_LEGPA (Q5X865) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1401 Score = 121 bits (304), Expect = 2e-27 Identities = 95/252 (37%), Positives = 137/252 (54%), Gaps = 43/252 (17%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE------------- 524 G ++ GD + E+S++ DIT GLP+V +FEAR + E Sbjct: 1106 GSLVGIGDVIARIPQERSKTRDITGGLPRVADLFEARKPKDSAVMAEVSGLVNFGKETKG 1165 Query: 523 -RRI-----EDW--NERIP--RILGVPWGFLIGAELTIAQSRIS---------------- 422 RR+ ED E IP R + V G + IA+ ++ Sbjct: 1166 KRRLIINVSEDQCHEELIPKWRHISVFEGEHVERGEIIAEGALNPHDILRLLGVGALANY 1225 Query: 421 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELI---GLLRAERA 251 +VN++Q VYR QGV+I+++HIE+I+RQ+ K ++ G S FL GE + +L+ Sbjct: 1226 IVNEVQDVYRLQGVKINDKHIEVIVRQMLRKRVITFAGDSK-FLVGEQVEESAMLQENDK 1284 Query: 250 GRALDESIYYRA-ILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 74 A + I ILLGIT+ASL T+SFIS ASFQET RVL +AA+ G++D L+GLKENV Sbjct: 1285 LLAEGKQIARGTPILLGITKASLATESFISAASFQETTRVLTEAAVSGKVDELRGLKENV 1344 Query: 73 VLGGIIPVGTGF 38 ++G +IP GTG+ Sbjct: 1345 MVGRLIPAGTGY 1356
>RPOC_LACAC (Q5FM96) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1217 Score = 121 bits (303), Expect = 2e-27 Identities = 88/243 (36%), Positives = 128/243 (52%), Gaps = 44/243 (18%) Frame = -3 Query: 607 SSDITQGLPKVEQIFEARS-------------IDSLSPNLE---RRIEDWNERIPRILGV 476 + DITQGLP+V+++FEAR+ IDS+ N R I + R V Sbjct: 950 AEDITQGLPRVQELFEARNPKGRATISEVDGVIDSIQENPAEHTREITVKGKIDTRSYSV 1009 Query: 475 PWGFLI----------GAELTIAQ--------------SRISLVNKIQKVYRSQGVQIHN 368 P+ + G +LT+ + ++ ++QK YR QGV I + Sbjct: 1010 PYTASVAVSEGDYVHRGDKLTLGSVDPKELIQVTDTLTTEKYILAEVQKAYRMQGVDIAD 1069 Query: 367 RHIEIIIRQVTSKVRVSEDGMSNVFLPGEL--IGLLRAERAGRALDESIYYRA--ILLGI 200 +H+E++ RQ+ KVRV + G +++ LPGE+ IG R + I A I+L I Sbjct: 1070 KHVEVLTRQMLQKVRVLDPGETDI-LPGEVMDIGQFRDRNKEVIISGGIPATAQSIILSI 1128 Query: 199 TRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHR 20 T+A+L T SF+S ASFQET RVL A++RG+ D L GLKENV++G IIP GTG + Sbjct: 1129 TKAALETNSFLSAASFQETTRVLTDASIRGKNDPLLGLKENVIIGKIIPAGTGMPIYRSM 1188 Query: 19 SPQ 11 P+ Sbjct: 1189 EPE 1191
>RPOC_LEPIN (Q8F0S3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1404 Score = 121 bits (303), Expect = 2e-27 Identities = 84/257 (32%), Positives = 132/257 (51%), Gaps = 45/257 (17%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLER--RIEDWNERI- 494 G+ + GD L ++ DIT GLP+V+++FEAR + E +IE E + Sbjct: 1111 GDKVKAGDILFKIPTVAEKTRDITGGLPRVDELFEARRPKDATTLAETDGKIEISGEIVK 1170 Query: 493 -----------PRILGVPWGFLIGAELTIAQS---------------------------- 431 P + V IG ++ + Sbjct: 1171 EKRVLYIHPDNPDLEKVKVTIPIGKQIRVRNGDFVKRGDQIDDGNLDPHDILRVKGVTAL 1230 Query: 430 RISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 251 ++ LV ++Q+VYR QGV I+++HIE+++RQ+ KV +++ G ++ ++ L+ E Sbjct: 1231 QVYLVQEVQEVYRLQGVHINDKHIEVVVRQMLRKVLITDSGDTSFVNQQQIDRLVFNEEN 1290 Query: 250 GRALDES---IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKE 80 R + E ILLG+T+ASLNT+SF S ASFQET +VL AA++G+ D L GLKE Sbjct: 1291 KRVIAEGGSPAESVPILLGLTKASLNTESFFSAASFQETTKVLTDAAIKGKTDNLMGLKE 1350 Query: 79 NVVLGGIIPVGTGFQKF 29 NV++G +IP GTG +K+ Sbjct: 1351 NVIIGHMIPAGTGTKKY 1367
>RPOC_LEPIC (Q72UA7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1404 Score = 121 bits (303), Expect = 2e-27 Identities = 84/257 (32%), Positives = 132/257 (51%), Gaps = 45/257 (17%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLER--RIEDWNERI- 494 G+ + GD L ++ DIT GLP+V+++FEAR + E +IE E + Sbjct: 1111 GDKVKAGDILFKIPTVAEKTRDITGGLPRVDELFEARRPKDATTLAETDGKIEISGEIVK 1170 Query: 493 -----------PRILGVPWGFLIGAELTIAQS---------------------------- 431 P + V IG ++ + Sbjct: 1171 EKRVLYIHPDNPDLEKVKVTIPIGKQIRVRNGDFVKRGDQIDDGNLDPHDILRVKGVTAL 1230 Query: 430 RISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 251 ++ LV ++Q+VYR QGV I+++HIE+++RQ+ KV +++ G ++ ++ L+ E Sbjct: 1231 QVYLVQEVQEVYRLQGVHINDKHIEVVVRQMLRKVLITDSGDTSFVNQQQIDRLVFNEEN 1290 Query: 250 GRALDES---IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKE 80 R + E ILLG+T+ASLNT+SF S ASFQET +VL AA++G+ D L GLKE Sbjct: 1291 KRVIAEGGSPAESVPILLGLTKASLNTESFFSAASFQETTKVLTDAAIKGKTDNLMGLKE 1350 Query: 79 NVVLGGIIPVGTGFQKF 29 NV++G +IP GTG +K+ Sbjct: 1351 NVIIGHMIPAGTGTKKY 1367
>RPOC_EHRRW (Q5HC04) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1411 Score = 120 bits (302), Expect = 3e-27 Identities = 86/255 (33%), Positives = 132/255 (51%), Gaps = 46/255 (18%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEAR--SIDSLSPNLERRIE---DWNE 500 G+ ++ GD + E ++ DIT GLP+V ++FEAR ++ +++ +E D+ Sbjct: 1105 GQKVHAGDVITRIPRESIKTRDITGGLPRVIELFEARRPKEHAIVSDIDGYVEFGKDYYR 1164 Query: 499 RIPRILGVPWGFLIG-AELTIAQSRISLVNK----------------------------- 410 RI P + E + + + ++VN+ Sbjct: 1165 SKRRIFIKPVDDKLSPVEYLVPKGKHTIVNEGDFVHKGDLLMDGDPDPHDILRVLGVEAL 1224 Query: 409 -------IQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 251 IQ+VYR QGV+I N+HIE+I+RQ+ KV + E G ++L GE + + + Sbjct: 1225 ANYMIAEIQQVYRLQGVRIDNKHIEVILRQMLQKVEIFEPG-DTMYLVGENVDVEEVLKT 1283 Query: 250 GRALDE----SIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLK 83 +++ Y IL GITRASL+T SF+S ASFQET +VL +AA G+ D L GLK Sbjct: 1284 NSNMEKIGKSPAKYIPILQGITRASLDTNSFVSAASFQETTKVLTEAAFSGKEDSLYGLK 1343 Query: 82 ENVVLGGIIPVGTGF 38 ENV++G +IP GTGF Sbjct: 1344 ENVIVGRLIPAGTGF 1358
>RPOC_PSYAR (Q4FQH4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1406 Score = 120 bits (302), Expect = 3e-27 Identities = 92/263 (34%), Positives = 133/263 (50%), Gaps = 43/263 (16%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEAR------------SIDSLSPNL-- 527 GE + G L S + DIT GLP+V +FEAR + S Sbjct: 1106 GEKVAAGSILGRVPQASSGTKDITGGLPRVADLFEARRPKDHAIMAEMSGVVSFGKETKG 1165 Query: 526 --------------ERRIEDW-------NERIPRILGVPWGFLIGAELTIAQSRISL--- 419 E I W NE + R + G ++ + + +L Sbjct: 1166 KNRFIITNEDGEIHEELIPKWRQINVFENETVARGEVIADGPQNPHDILRLKGQTALADY 1225 Query: 418 -VNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 242 VN++Q VYR QGV+I+++HIE+IIRQ+ KV +++ G SN F G+ + + Sbjct: 1226 IVNEVQDVYRLQGVKINDKHIEVIIRQMLRKVEITDGGDSNHF-KGDQVEYADIKALNAK 1284 Query: 241 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 74 L+ + + LLGIT+ASL T+SFIS ASFQET RVL AA+ G++D L+GLKENV Sbjct: 1285 LEAEDKFPVQFERQLLGITKASLATESFISAASFQETTRVLTAAAVTGKVDELRGLKENV 1344 Query: 73 VLGGIIPVGTGFQKFVHRSPQDK 5 V+G +IP GTG H++ ++K Sbjct: 1345 VVGRLIPAGTGLA--YHKARKEK 1365
>RPOC_NITEU (Q82T76) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1404 Score = 120 bits (301), Expect = 4e-27 Identities = 88/251 (35%), Positives = 130/251 (51%), Gaps = 43/251 (17%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLER-------RIEDW 506 G+ + G+ L E S++ DIT GLP+V ++FEAR + E + Sbjct: 1125 GQQVNIGEVLARIPQETSKTRDITGGLPRVAELFEARVPKDVGFLAEATGTVAFGKDTKG 1184 Query: 505 NER--IPRILGVPWGFLIGAELTIAQSRISLVNK-------------------------- 410 +R I + GV +LI + + +VNK Sbjct: 1185 KQRLVITDLDGVAHEYLIPKDKHVTAHDGQVVNKGEVIVDGPIDPHDILRLQGVEALARY 1244 Query: 409 ----IQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG----LLRAER 254 +Q VYR QGV+I+++HIE+I+RQ+ +V++ G S+ F+PGE + L E+ Sbjct: 1245 ISNEVQDVYRLQGVRINDKHIEVIVRQMLRRVQIMNAGDSS-FIPGEQVERAEVLTENEK 1303 Query: 253 AGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 74 Y +LLGIT+ASL+T SFIS ASFQET RVL +A++ G+ D L+GLKENV Sbjct: 1304 LIAENKMPATYEYVLLGITKASLSTDSFISAASFQETTRVLTEASIMGKKDDLRGLKENV 1363 Query: 73 VLGGIIPVGTG 41 ++G +IP GTG Sbjct: 1364 IVGRLIPAGTG 1374
>RPOC_EHRRG (Q5FFD8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1411 Score = 120 bits (301), Expect = 4e-27 Identities = 86/255 (33%), Positives = 132/255 (51%), Gaps = 46/255 (18%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEAR--SIDSLSPNLERRIE---DWNE 500 G+ ++ GD + E ++ DIT GLP+V ++FEAR ++ +++ +E D+ Sbjct: 1105 GQKVHAGDVITRIPRESIKTRDITGGLPRVIELFEARRPKEHAIVSDIDGYVEFGKDYYR 1164 Query: 499 RIPRILGVPWGFLIG-AELTIAQSRISLVNK----------------------------- 410 RI P + E + + + ++VN+ Sbjct: 1165 SKRRIFIKPVDDKLSPVEYLVPKGKHTIVNEGDFVHKGDLLMDGDPDPHDILRVLGVEAL 1224 Query: 409 -------IQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 251 IQ+VYR QGV+I N+HIE+I+RQ+ KV + E G ++L GE + + + Sbjct: 1225 ANYMIAEIQQVYRLQGVRIDNKHIEVILRQMLQKVEIFEPG-DTMYLIGENVDVEEVLKT 1283 Query: 250 GRALDE----SIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLK 83 +++ Y IL GITRASL+T SF+S ASFQET +VL +AA G+ D L GLK Sbjct: 1284 NSNMEKIGKSPAKYIPILQGITRASLDTNSFVSAASFQETTKVLTEAAFSGKEDSLYGLK 1343 Query: 82 ENVVLGGIIPVGTGF 38 ENV++G +IP GTGF Sbjct: 1344 ENVIVGRLIPAGTGF 1358
>RPOC_BLOFL (Q7VRP8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1420 Score = 120 bits (301), Expect = 4e-27 Identities = 92/256 (35%), Positives = 134/256 (52%), Gaps = 47/256 (18%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFE------ARSIDSLSPNL-------- 527 G + GD L +E S + DIT GLP+V +FE A + +S + Sbjct: 1120 GSRIISGDVLARLPHETSGTKDITGGLPRVADLFEARRPKEAAILAEISGVISFGKETKG 1179 Query: 526 ERRI-----------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS------------ 422 +RR+ + E IP R L V G + I+ S Sbjct: 1180 KRRLMICSTDENGGENIYEEMIPKWRHLNVFEGEYVERGDVISDGPESPHDILRLRGVHA 1239 Query: 421 ----LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAER 254 +VN++Q+VYR QGV+I+++HIE+IIRQ+ K V G S+ FL GE + R + Sbjct: 1240 VTNYIVNEVQEVYRLQGVKINDKHIEVIIRQMLRKAIVIRSGDSD-FLAGEQVEYARIKI 1298 Query: 253 AGRALDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGL 86 + L+ + + LLGIT+ASL T+SFIS ASFQET RVL ++++ G+ D L+GL Sbjct: 1299 VNQTLEREGKVKVSFVRNLLGITKASLATESFISAASFQETTRVLTESSVAGKKDDLRGL 1358 Query: 85 KENVVLGGIIPVGTGF 38 KENV++G +IP GTG+ Sbjct: 1359 KENVIVGRLIPAGTGY 1374
>RPOC_LEGPL (Q5WZL8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1401 Score = 120 bits (301), Expect = 4e-27 Identities = 94/246 (38%), Positives = 134/246 (54%), Gaps = 43/246 (17%) Frame = -3 Query: 646 GDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE--------------RRI-- 515 GD + E+S++ DIT GLP+V +FEAR + E RR+ Sbjct: 1112 GDVIARIPQERSKTRDITGGLPRVADLFEARKPKDSAVMAEVSGLVNFGKETKGKRRLII 1171 Query: 514 ---EDW--NERIP--RILGVPWGFLIGAELTIAQSRIS----------------LVNKIQ 404 ED E IP R + V G + IA+ ++ +VN++Q Sbjct: 1172 NVSEDQCHEELIPKWRHISVFEGEHVERGEIIAEGALNPHDILRLLGVGALANYIVNEVQ 1231 Query: 403 KVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELI---GLLRAERAGRALDE 233 VYR QGV+I+++HIE+I+RQ+ K ++ G S FL GE + +L+ A + Sbjct: 1232 DVYRLQGVKINDKHIEVIVRQMLRKRVITFAGDSK-FLVGEQVEESAMLQENDKLLAEGK 1290 Query: 232 SIYYRA-ILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGII 56 I ILLGIT+ASL T+SFIS ASFQET RVL +AA+ G++D L+GLKENV++G +I Sbjct: 1291 QIARGTPILLGITKASLATESFISAASFQETTRVLTEAAVSGKVDELRGLKENVMVGRLI 1350 Query: 55 PVGTGF 38 P GTG+ Sbjct: 1351 PAGTGY 1356
>RPOC_CORGL (Q8NT25) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1333 Score = 120 bits (300), Expect = 5e-27 Identities = 67/135 (49%), Positives = 92/135 (68%), Gaps = 4/135 (2%) Frame = -3 Query: 421 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR- 245 L++++Q VYR+QGV IH++HIEIIIRQ+ + V E G S FLPG L+ L A+ A Sbjct: 1155 LIDEVQAVYRAQGVAIHDKHIEIIIRQMLRRGTVIESG-STEFLPGSLVDLSEAKLANSE 1213 Query: 244 ---ALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 74 A + R+ ++GIT+ASL T+S++S ASFQET RVL AA+ R D L GLKENV Sbjct: 1214 AIGAGGQPAELRSEIMGITKASLATESWLSAASFQETTRVLTDAAINKRSDKLIGLKENV 1273 Query: 73 VLGGIIPVGTGFQKF 29 ++G +IP GTG ++ Sbjct: 1274 IIGKLIPAGTGISRY 1288
>RPOC_CORDI (Q6NJF6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1336 Score = 119 bits (299), Expect = 6e-27 Identities = 67/135 (49%), Positives = 91/135 (67%), Gaps = 4/135 (2%) Frame = -3 Query: 421 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 242 LV+++Q VYR+QGV IH++HIEIIIRQ+ + V E G S FLPG L+ L A+ A Sbjct: 1156 LVDEVQDVYRAQGVAIHDKHIEIIIRQMLRRGTVIESG-STEFLPGTLVDLSEAKAANAE 1214 Query: 241 L----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 74 + R+ ++GIT+ASL T+S++S ASFQET RVL AA+ R D L GLKENV Sbjct: 1215 ALANGGQPAELRSEIMGITKASLATESWLSAASFQETTRVLTDAAINKRSDKLIGLKENV 1274 Query: 73 VLGGIIPVGTGFQKF 29 ++G +IP GTG ++ Sbjct: 1275 IIGKLIPAGTGISRY 1289
>RPOC_CHRVO (Q7NQE7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1396 Score = 119 bits (298), Expect = 8e-27 Identities = 87/264 (32%), Positives = 137/264 (51%), Gaps = 43/264 (16%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIF-------------------------- 563 G+ + KG+ L E S++ DIT GLP+V ++F Sbjct: 1114 GQDVGKGEVLARIPQESSKTRDITGGLPRVAELFEARSPKDAGMLAEVTGTVSFGKDTKG 1173 Query: 562 ---------EARSIDSLSPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQSRISL--- 419 E ++L P + + + + R + G + ++ Q +L Sbjct: 1174 KQRLIITDLEGNGYENLIPKDKHVLVHDGQVVNRGESIVDGPVDPHDILRLQGIEALARY 1233 Query: 418 -VNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG----LLRAER 254 V ++Q+VYR QGV+I+++HIE+IIRQ+ +V +++ G + F+ GE + L ++ Sbjct: 1234 IVQEVQEVYRLQGVKINDKHIEVIIRQMLRRVIITDSGDTE-FIQGEQVERADVLEMNDK 1292 Query: 253 AGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 74 E Y +LLGIT+ASL+T SFIS ASFQET RVL +AA+ G+ D L+GLKENV Sbjct: 1293 MMAENKEPAQYENVLLGITKASLSTDSFISAASFQETTRVLTEAAIMGKRDDLRGLKENV 1352 Query: 73 VLGGIIPVGTGFQKFVHRSPQDKN 2 ++G +IP GTG HR+ + +N Sbjct: 1353 IVGRLIPAGTGLA--YHRTRRRQN 1374
>RPOC_COREF (Q8FS96) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1333 Score = 119 bits (298), Expect = 8e-27 Identities = 66/135 (48%), Positives = 91/135 (67%), Gaps = 4/135 (2%) Frame = -3 Query: 421 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 242 L++++Q VYR+QGV IH++HIEIIIRQ+ + V E G S FLPG L+ L A+ A Sbjct: 1155 LIDEVQAVYRAQGVAIHDKHIEIIIRQMLRRGTVIESG-STEFLPGSLVDLSEAKLANSE 1213 Query: 241 L----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 74 + R+ ++GIT+ASL T+S++S ASFQET RVL AA+ R D L GLKENV Sbjct: 1214 AIANGGQPAELRSEIMGITKASLATESWLSAASFQETTRVLTDAAINKRSDKLIGLKENV 1273 Query: 73 VLGGIIPVGTGFQKF 29 ++G +IP GTG ++ Sbjct: 1274 IIGKLIPAGTGISRY 1288 Score = 31.2 bits (69), Expect = 3.0 Identities = 13/23 (56%), Positives = 19/23 (82%) Frame = -3 Query: 601 DITQGLPKVEQIFEARSIDSLSP 533 DIT GLP+V+++FEAR +L+P Sbjct: 1038 DITGGLPRVQELFEARVPKNLAP 1060
>RPOC_RICCN (Q9RH40) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1372 Score = 119 bits (298), Expect = 8e-27 Identities = 87/247 (35%), Positives = 132/247 (53%), Gaps = 44/247 (17%) Frame = -3 Query: 646 GDRLVTFKYEKSRSSDITQGLPKVEQIFEAR--SIDSLSPNLERRIE---DWNERIPRIL 482 GD + E + + DIT GLP+V ++ EAR ++ ++ R+E D+ + I+ Sbjct: 1110 GDIIARIPKESTTTKDITGGLPRVAELVEARRPKDHAVIAEIDGRVEFGKDYKSKRRIII 1169 Query: 481 G-----------VPWG---------FLIGAELTIAQSRIS---------------LVNKI 407 VP G F+ +L I + + +VN++ Sbjct: 1170 HPIDETMSIEYMVPKGKHVVVNEGDFVKKGDLLIDGNPVLQDILKVMGVEVLANYIVNEV 1229 Query: 406 QKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAG-RALDES 230 Q VYR QGV+I ++HIE+IIRQ+ KV V++ G L GE I + +A+ Sbjct: 1230 QAVYRLQGVKIDDKHIEVIIRQMLQKVEVTDSG-GTTLLVGEKIDRHEFDEINEKAMKNG 1288 Query: 229 IY---YRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGI 59 + + IL GIT+ASL T+SFIS ASFQET RVL +AA+ G++D L+GLKENV++G + Sbjct: 1289 LKPAEAQLILQGITKASLQTRSFISAASFQETTRVLTEAAIAGKVDKLRGLKENVIVGRL 1348 Query: 58 IPVGTGF 38 +P GTG+ Sbjct: 1349 VPAGTGY 1355
>RPOC_SILPO (Q5LMQ6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1413 Score = 119 bits (297), Expect = 1e-26 Identities = 91/269 (33%), Positives = 136/269 (50%), Gaps = 48/269 (17%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEAR---------SID----------- 545 G+++ GD + E +++ DIT GLP+V ++FEAR ID Sbjct: 1106 GQVIEAGDVIARIPREGAKTKDITGGLPRVAELFEARRPKDHAIIAEIDGYVRFGRDYKN 1165 Query: 544 ----SLSPNLERRIEDWNERIPR------------------ILGVPWGFLIGAELTIAQS 431 S+ P+ E +E +P+ + G P I + L + Sbjct: 1166 KRRISIEPSNEA-MEPVEYMVPKGKHIPVQEGDFVQKGDYIMDGNPAPHDILSILGVEAL 1224 Query: 430 RISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 251 +V ++Q+VYR QGV+I+++HIE+I+RQ+ K +S+ G L GE + + A Sbjct: 1225 ANYMVKEVQEVYRLQGVKINDKHIEVIVRQMLQKWEISDSG-DTTLLKGEHVDKQEFDAA 1283 Query: 250 GRAL----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLK 83 ILLGIT+ASL T+SFIS ASFQET RVL +A+++G+ D L GLK Sbjct: 1284 NEKTIARGGRPASGEPILLGITKASLQTRSFISAASFQETTRVLTEASVQGKKDKLVGLK 1343 Query: 82 ENVVLGGIIPVGTG--FQKFVHRSPQDKN 2 ENV++G +IP GTG Q+ H + Q N Sbjct: 1344 ENVIVGRLIPAGTGGATQQMRHIATQRDN 1372
>RPOC_DEHSC (Q3ZX00) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1295 Score = 119 bits (297), Expect = 1e-26 Identities = 79/208 (37%), Positives = 125/208 (60%), Gaps = 4/208 (1%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERIPRI 485 GE+ +G+ L+T KY +S + T +P QI + ++ D++ +++ D + I Sbjct: 1070 GEVTVEGN-LITIKYSESEEREYT--IPAAMQI-KVKTGDTIRAG--QQLTDGSINPQDI 1123 Query: 484 LGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGM 305 L + +G + + LV ++QKVY SQGV I+++HIE+I RQ+ KVR+ G Sbjct: 1124 LSI-----LGRDAV----QKYLVEEVQKVYYSQGVHINDKHIEVIARQMLIKVRIDSSGD 1174 Query: 304 SNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGITRASLNTQSFISEASFQETAR 137 +++ +PGEL+ R E + E +L+GITRASL+T+S+++ ASFQET R Sbjct: 1175 TDL-VPGELVDKFRYEDINAKVLAEGGEPATAHTVLMGITRASLSTESWLAAASFQETTR 1233 Query: 136 VLAKAALRGRIDWLKGLKENVVLGGIIP 53 VL AA+ GR+D L GLKENV++G +IP Sbjct: 1234 VLTDAAIYGRVDKLSGLKENVIIGKLIP 1261 Score = 30.8 bits (68), Expect = 3.9 Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 5/44 (11%) Frame = -3 Query: 601 DITQGLPKVEQIFEAR-----SIDSLSPNLERRIEDWNERIPRI 485 DIT GLP+VE++FEAR SI S + IE+ N R RI Sbjct: 970 DITTGLPRVEELFEARPPKVQSIISEIDGVVEVIENENGRHIRI 1013
>RPOC_RICFE (Q4UKD5) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1372 Score = 119 bits (297), Expect = 1e-26 Identities = 85/248 (34%), Positives = 129/248 (52%), Gaps = 45/248 (18%) Frame = -3 Query: 646 GDRLVTFKYEKSRSSDITQGLPKVEQIFEAR--SIDSLSPNLERRIE---DWNERIPRIL 482 GD + E + + DIT GLP+V ++ EAR ++ ++ R+E D+ + RI+ Sbjct: 1110 GDIIARIPKESTTTKDITGGLPRVAELVEARRPKDHAVIAEIDGRVEFGKDYKSK-RRII 1168 Query: 481 GVPWGFLIGAELTIAQSRISLVNK------------------------------------ 410 P + E + + + +VN+ Sbjct: 1169 IHPIDETMSIEYMVPKGKHVVVNEGDFVKKGDLLIDGNPVLQDILKVMGVEVLANYIVKE 1228 Query: 409 IQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAG-RALDE 233 +Q VYR QGV+I ++HIE+IIRQ+ KV +++ G L GE I E +A+ Sbjct: 1229 VQAVYRLQGVKIDDKHIEVIIRQMLQKVEITDSG-GTTLLAGEKIDRHEFEEINEKAIKN 1287 Query: 232 SIY---YRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGG 62 + + IL GIT+ASL T+SFIS ASFQET RVL +AA+ G+ID L+GLKENV++G Sbjct: 1288 GLKPAEAQLILQGITKASLQTRSFISAASFQETTRVLTEAAIAGKIDKLRGLKENVIVGR 1347 Query: 61 IIPVGTGF 38 ++P GTG+ Sbjct: 1348 LVPAGTGY 1355
>RPOC_AZOSE (Q5P338) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1409 Score = 118 bits (295), Expect = 2e-26 Identities = 91/276 (32%), Positives = 134/276 (48%), Gaps = 57/276 (20%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEAR---------------SIDSLSPN 530 G+ + GD L E +++ DIT GLP+V ++FEAR S + Sbjct: 1117 GQEVSVGDILARIPQESAKTRDITGGLPRVAELFEARPPKDAGVLAEYTGTVSFGKDTKG 1176 Query: 529 LERRIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNK-------------------- 410 +R + I G FLI + + +VNK Sbjct: 1177 KQRLV------ITEADGTAHEFLIPKDKHVMVHDGQVVNKGELIVDGPADPHDILRLQGI 1230 Query: 409 ----------IQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRA 260 +Q VYR QGV+I+++HIE+I+RQ+ +V +++ G S +R Sbjct: 1231 EALARYIIDEVQDVYRLQGVKINDKHIEVIVRQMLRRVVINDAGNSR---------FIRE 1281 Query: 259 ERAGRA--LDES----------IYYRAILLGITRASLNTQSFISEASFQETARVLAKAAL 116 E+ R+ LDE+ Y+ +LLGIT+ASL+T SFIS ASFQET RVL +AA+ Sbjct: 1282 EQVERSEVLDENDRIEAEGKLPAQYQNVLLGITKASLSTDSFISAASFQETTRVLTEAAI 1341 Query: 115 RGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRSPQD 8 G+ D L+GLKENV++G +IP GTG +R Q+ Sbjct: 1342 MGKRDDLRGLKENVIVGRLIPAGTGMAYHRNRKAQN 1377
>RPOC_DECAR (Q47JA9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1403 Score = 117 bits (293), Expect = 3e-26 Identities = 91/259 (35%), Positives = 130/259 (50%), Gaps = 43/259 (16%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE-------RRIEDW 506 G+ + GD L E +++ DIT GLP+V ++FEAR+ S E + Sbjct: 1116 GQQVGVGDVLARMPQESAKTRDITGGLPRVAELFEARTPKDASVLAEVTGTISFGKDTKG 1175 Query: 505 NER--IPRILGVPWGFLIGAELTIAQSRISLVNK-------------------------- 410 +R I + G FLI + + +VNK Sbjct: 1176 KQRLVITDLEGNVHEFLISKDKHVLVHDGQVVNKGEKIVEGEPDPHDILRLQGIEALARY 1235 Query: 409 ----IQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG----LLRAER 254 +Q VYR QGV+I+++HIE+I+RQ+ +V + E G + F+ E + L +R Sbjct: 1236 ITDEVQDVYRLQGVKINDKHIEVIVRQMLRRVTIVEPGDTK-FIKSEQVERAELLAENDR 1294 Query: 253 AGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 74 A +LLGIT+ASL+T SFIS ASFQET RVL +AA+ G+ D L+GLKENV Sbjct: 1295 ANAEGKIPATIEHMLLGITKASLSTDSFISAASFQETTRVLTEAAIMGKRDELRGLKENV 1354 Query: 73 VLGGIIPVGTGFQKFVHRS 17 ++G +IP GTG HRS Sbjct: 1355 IVGRLIPAGTGLA--FHRS 1371
>RPOC_RICTY (Q68XM7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1372 Score = 117 bits (293), Expect = 3e-26 Identities = 84/248 (33%), Positives = 129/248 (52%), Gaps = 45/248 (18%) Frame = -3 Query: 646 GDRLVTFKYEKSRSSDITQGLPKVEQIFEAR--SIDSLSPNLERRIE---DWNERIPRIL 482 GD + E + + DIT GLP+V ++ EAR ++ ++ R+E D+ + RI+ Sbjct: 1110 GDIIARIPKESTTTKDITGGLPRVAELVEARRPKDHAVIAEVDGRVEFGKDYKSK-RRII 1168 Query: 481 GVPWGFLIGAELTIAQSRISLVNK------------------------------------ 410 P + E + + + +VN+ Sbjct: 1169 IHPIDGTLSIEYMVPKGKHVVVNEGDFVKKGDLLIDGNPVLQDILKVMGVEVLANYIVKE 1228 Query: 409 IQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAG-RALDE 233 +Q VYR QGV+I ++HIE+IIRQ+ KV V++ G L GE I + +A+ Sbjct: 1229 VQAVYRLQGVKIDDKHIEVIIRQMLQKVEVTDSG-GTTLLVGEKIDRHEFDEINEKAMKN 1287 Query: 232 SIY---YRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGG 62 + + IL GIT+ASL T+SFIS ASFQET RVL +AA+ G++D L+GLKENV++G Sbjct: 1288 GLKPAEAQLILQGITKASLQTRSFISAASFQETTRVLTEAAIAGKVDKLRGLKENVIVGR 1347 Query: 61 IIPVGTGF 38 ++P GTG+ Sbjct: 1348 LVPAGTGY 1355
>RPOC_RICPR (Q9ZE20) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1372 Score = 117 bits (292), Expect = 4e-26 Identities = 84/248 (33%), Positives = 129/248 (52%), Gaps = 45/248 (18%) Frame = -3 Query: 646 GDRLVTFKYEKSRSSDITQGLPKVEQIFEAR--SIDSLSPNLERRIE---DWNERIPRIL 482 GD + E + + DIT GLP+V ++ EAR ++ ++ R+E D+ + RI+ Sbjct: 1110 GDIIARIPKESTTTKDITGGLPRVAELVEARRPKDHAVIAEVDGRVEFGKDYKSK-RRII 1168 Query: 481 GVPWGFLIGAELTIAQSRISLVNK------------------------------------ 410 P + E + + + +VN+ Sbjct: 1169 IHPIDGTMSIEYMVPKGKHVVVNEGDFVKKGDLLIDGNPVLQDILKVMGVEVLANYIVKE 1228 Query: 409 IQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAG-RALDE 233 +Q VYR QGV+I ++HIE+IIRQ+ KV V++ G L GE I + +A+ Sbjct: 1229 VQAVYRLQGVKIDDKHIEVIIRQMLQKVEVTDSG-GTTLLVGEKIDRHEFDEINAKAMKN 1287 Query: 232 SIY---YRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGG 62 + + IL GIT+ASL T+SFIS ASFQET RVL +AA+ G++D L+GLKENV++G Sbjct: 1288 GLKPAEAQLILQGITKASLQTRSFISAASFQETTRVLTEAAIAGKVDKLRGLKENVIVGR 1347 Query: 61 IIPVGTGF 38 ++P GTG+ Sbjct: 1348 LVPAGTGY 1355
>RPOC_FRATT (Q5NID1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1417 Score = 116 bits (291), Expect = 5e-26 Identities = 87/251 (34%), Positives = 135/251 (53%), Gaps = 45/251 (17%) Frame = -3 Query: 658 ILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDS---LSP------------NLE 524 IL GD + E S++ DIT GLP+V ++FEAR LSP + Sbjct: 1101 ILEVGDIVAKIPLEGSKNKDITGGLPRVAELFEARRPKDAAILSPCDGMVRLGNRDTKEK 1160 Query: 523 RRIE--DWNERIPRILGVPWGFLI----GAELT--------------------IAQSRIS 422 +RIE D N I + +P + G +++ + + Sbjct: 1161 QRIEIIDKNGHIVEEILLPKSRHLVVFDGEQVSRGDVLADGPTDPHDLLKYKGLEEFADY 1220 Query: 421 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRA----ER 254 ++ + Q VYR QGV I+++HIE I+RQ+ K + ++G S F+ E I L+R ++ Sbjct: 1221 ILIEAQSVYRMQGVVINDKHIETIVRQMLRKAVILDEGDSK-FVKDESIELVRILEENDK 1279 Query: 253 AGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 74 + + + Y +L+GITR+SL+T+SF+S ASFQET RVL +A++ +ID L+GLKENV Sbjct: 1280 LRKQGKKEVEYELVLMGITRSSLSTESFLSAASFQETTRVLTEASINSQIDNLRGLKENV 1339 Query: 73 VLGGIIPVGTG 41 ++G +IP GTG Sbjct: 1340 LIGRLIPTGTG 1350
>RPOC_THET8 (Q8RQE8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1524 Score = 116 bits (290), Expect = 7e-26 Identities = 81/231 (35%), Positives = 128/231 (55%), Gaps = 42/231 (18%) Frame = -3 Query: 607 SSDITQGLPKVEQIFEARSIDSLSPNLER----RIEDWNERIP----------------- 491 ++DITQGLP+V ++FEAR + + E RIE+ E++ Sbjct: 1249 AADITQGLPRVIELFEARRPKAKAVISEIDGVVRIEETEEKLSVFVESEGFSKEYKLPKE 1308 Query: 490 -RILGVPWGFLIGAELTIAQSRIS----------------LVNKIQKVYRSQGVQIHNRH 362 R+L V G + A + + I LV +IQKVYR+QGV++H++H Sbjct: 1309 ARLL-VKDGDYVEAGQPLTRGAIDPHQLLEAKGPEAVERYLVEEIQKVYRAQGVKLHDKH 1367 Query: 361 IEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGITR 194 IEI++RQ+ V V++ G S + L G+++ E L + ++ +L+G+T+ Sbjct: 1368 IEIVVRQMMKYVEVTDPGDSRL-LEGQVLEKWDVEALNERLIAEGKTPVAWKPLLMGVTK 1426 Query: 193 ASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTG 41 ++L+T+S++S ASFQ T VL +AA+ G+ D L GLKENV+LG +IP GTG Sbjct: 1427 SALSTKSWLSAASFQNTTHVLTEAAIAGKKDELIGLKENVILGRLIPAGTG 1477
>RPOC_CAMJR (Q5HVY8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1517 Score = 116 bits (290), Expect = 7e-26 Identities = 87/253 (34%), Positives = 130/253 (51%), Gaps = 43/253 (16%) Frame = -3 Query: 670 HYGEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARS---------------IDSLS 536 H G+ + + D L ++S DIT GLP+V ++FEAR D Sbjct: 1253 HDGDKIAQADILAKTPKAAAKSKDITGGLPRVSELFEARKPKNAAVIAEIDGVVRFDKPL 1312 Query: 535 PNLERRI---EDWNERIPRI-----LGVPWGFLIGAELTIAQSRIS-------------- 422 + ER I ED I + V G I A + +S Sbjct: 1313 RSKERIIIQAEDGTSAEYLIDKSKHIQVRDGEFIHAGEKLTDGVVSSHDVLKILGEKALH 1372 Query: 421 --LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRA---- 260 L+++IQ+VYR QGV I ++HIE+I+ Q+ +V+V + G + F+ G+L+ + Sbjct: 1373 YYLISEIQQVYRGQGVVISDKHIEVIVSQMLRQVKVVDSGHTK-FIEGDLVSRRKFREEN 1431 Query: 259 ERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKE 80 ER R E +LLG+TRA++ + S IS ASFQET +VL +A++ G+ D+L+ LKE Sbjct: 1432 ERIIRMGGEPAIAEPVLLGVTRAAIGSDSVISAASFQETTKVLTEASIAGKFDYLEDLKE 1491 Query: 79 NVVLGGIIPVGTG 41 NV+LG +IPVGTG Sbjct: 1492 NVILGRMIPVGTG 1504
>RPOC_CAMJE (Q9PI30) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1517 Score = 116 bits (290), Expect = 7e-26 Identities = 87/253 (34%), Positives = 130/253 (51%), Gaps = 43/253 (16%) Frame = -3 Query: 670 HYGEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARS---------------IDSLS 536 H G+ + + D L ++S DIT GLP+V ++FEAR D Sbjct: 1253 HDGDKIAQADILAKTPKAAAKSKDITGGLPRVSELFEARKPKNAAVIAEIDGVVRFDKPL 1312 Query: 535 PNLERRI---EDWNERIPRI-----LGVPWGFLIGAELTIAQSRIS-------------- 422 + ER I ED I + V G I A + +S Sbjct: 1313 RSKERIIIQAEDGTSAEYLIDKSKHIQVRDGEFIHAGEKLTDGVVSSHDVLKILGEKALH 1372 Query: 421 --LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRA---- 260 L+++IQ+VYR QGV I ++HIE+I+ Q+ +V+V + G + F+ G+L+ + Sbjct: 1373 YYLISEIQQVYRGQGVVISDKHIEVIVSQMLRQVKVVDSGHTK-FIEGDLVSRRKFREEN 1431 Query: 259 ERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKE 80 ER R E +LLG+TRA++ + S IS ASFQET +VL +A++ G+ D+L+ LKE Sbjct: 1432 ERIIRMGGEPAIAEPVLLGVTRAAIGSDSVISAASFQETTKVLTEASIAGKFDYLEDLKE 1491 Query: 79 NVVLGGIIPVGTG 41 NV+LG +IPVGTG Sbjct: 1492 NVILGRMIPVGTG 1504
>RPOC_CHLCV (Q822J2) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1393 Score = 116 bits (290), Expect = 7e-26 Identities = 86/235 (36%), Positives = 123/235 (52%), Gaps = 44/235 (18%) Frame = -3 Query: 610 RSSDITQGLPKVEQIFEARS------IDSLSPNLERRIEDWNERI----PRILGVPWGFL 461 ++ DIT GLP+V ++ EAR I + ++ + N+RI I G+ L Sbjct: 1131 KTKDITGGLPRVAELVEARKPEDAADIAKIDGVVDFKGIQKNKRILVVRDEITGMEEEHL 1190 Query: 460 I----------------GAELT--------------IAQSRISLVNKIQKVYRSQGVQIH 371 I G +LT + + + LVN++Q+VYR QGV I+ Sbjct: 1191 IPLTKHLIVQRGDNVMKGQQLTDGLVVPHEILEICGVRELQKYLVNEVQEVYRLQGVDIN 1250 Query: 370 NRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRA----ILLG 203 ++HIEII+RQ+ KVR+++ G L GE + R +E A +LLG Sbjct: 1251 DKHIEIIVRQMLQKVRITDPG-DTTLLFGEEVNKKEFYEENRRTEEDGGKPAQAVPVLLG 1309 Query: 202 ITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGF 38 IT+ASL T+SFIS ASFQ+T RVL AA + D+L G KENV++G +IP GTGF Sbjct: 1310 ITKASLGTESFISAASFQDTTRVLTDAACSSKTDYLLGFKENVIMGHMIPGGTGF 1364
>RPOC_THEAQ (Q9KWU6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1524 Score = 115 bits (289), Expect = 9e-26 Identities = 81/230 (35%), Positives = 128/230 (55%), Gaps = 42/230 (18%) Frame = -3 Query: 604 SDITQGLPKVEQIFEARSIDSLSPNLER----RIEDWNERIP------------------ 491 +DITQGLP+V ++FEAR + + E RIE+ +R+ Sbjct: 1250 TDITQGLPRVIELFEARRPKAKAVISEIDGVVRIEEGEDRLSVFVESEGFSKEYKLPKDA 1309 Query: 490 RILGVPWGFLIGAELTIAQSRIS----------------LVNKIQKVYRSQGVQIHNRHI 359 R+L V G + A + + I LV++IQKVYR+QGV++H++HI Sbjct: 1310 RLL-VKDGDYVEAGQPLTRGAIDPHQLLEAKGPEAVERYLVDEIQKVYRAQGVKLHDKHI 1368 Query: 358 EIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES----IYYRAILLGITRA 191 EI++RQ+ V V++ G S + L G+++ E L + ++ +L+G+T++ Sbjct: 1369 EIVVRQMLKYVEVTDPGDSRL-LEGQVLEKWDVEALNERLIAEGKVPVAWKPLLMGVTKS 1427 Query: 190 SLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTG 41 +L+T+S++S ASFQ T VL +AA+ G+ D L GLKENV+LG +IP GTG Sbjct: 1428 ALSTKSWLSAASFQNTTHVLTEAAIAGKKDELIGLKENVILGRLIPAGTG 1477
>RPOC_COXBU (Q83ET0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1414 Score = 115 bits (289), Expect = 9e-26 Identities = 62/132 (46%), Positives = 92/132 (69%), Gaps = 4/132 (3%) Frame = -3 Query: 421 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 242 +VN++Q+VYR QGV+I+++HIE+I+RQ+ KV++++ G +++ L E + R Sbjct: 1232 IVNEVQEVYRLQGVKINDKHIEVIVRQMLRKVKITQPGDTDL-LQNEQVERTRVREENEK 1290 Query: 241 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 74 + + ILLGIT+ASL T+SFIS ASFQET RVL A++ G+ D L+GLKENV Sbjct: 1291 IIKKDGTVAKVEPILLGITKASLATESFISAASFQETTRVLTAASVAGKRDDLRGLKENV 1350 Query: 73 VLGGIIPVGTGF 38 ++G +IP GTGF Sbjct: 1351 IVGRLIPAGTGF 1362
>RPOBC_WOLSU (Q7MA56) Bifunctional DNA-directed RNA polymerase, beta and beta'| chain (EC 2.7.7.6) [Includes: DNA-directed RNA polymerase beta chain (Transcriptase beta chain) (RNA polymerase beta subunit); DNA-directed RNA polymerase beta' chain (Transcri Length = 2883 Score = 115 bits (289), Expect = 9e-26 Identities = 85/238 (35%), Positives = 126/238 (52%), Gaps = 44/238 (18%) Frame = -3 Query: 613 SRSSDITQGLPKVEQIFEARS---------IDS---------------LSPNLERRIEDW 506 ++S DIT GLP+V ++FEAR ID ++ + R E Sbjct: 2635 AKSKDITGGLPRVSELFEARKPKDPAVLAEIDGVVSFGKPIRGKERIIITADDGRTTEYA 2694 Query: 505 NERIPRILGVPWGFLIGAELTIAQSRIS----------------LVNKIQKVYRSQGVQI 374 ++ IL V G + A +I +S +V+++Q+VYR QGV I Sbjct: 2695 VDKSKHIL-VHHGEFVHAGESITDGIVSSHDILRISGEKELHKYIVSEVQQVYRRQGVNI 2753 Query: 373 HNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRA----ERAGRALDESIYYRAILL 206 ++HIEII+ Q+ +VR+ + G + F+ G+L+ ER R E +LL Sbjct: 2754 ADKHIEIIVSQMLRQVRIVDSGNTK-FIEGDLVSKRHFKEENERTIRLGGEPAIAEPVLL 2812 Query: 205 GITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQK 32 GITRA++ + S IS ASFQET +VL +A++ +ID+L+ LKENVVLG +IPVGTG K Sbjct: 2813 GITRAAIGSDSIISAASFQETTKVLTEASIAAKIDFLEDLKENVVLGRMIPVGTGIYK 2870
>RPOC_THET2 (Q72HM6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1513 Score = 115 bits (288), Expect = 1e-25 Identities = 80/231 (34%), Positives = 127/231 (54%), Gaps = 42/231 (18%) Frame = -3 Query: 607 SSDITQGLPKVEQIFEARSIDSLSPNLER----RIEDWNERIP----------------- 491 ++DITQGLP+V ++FEAR + + E RIE+ E++ Sbjct: 1238 AADITQGLPRVIELFEARRPKAKAVISEIDGVVRIEETEEKLSVFVESEGFSKEYKLPKE 1297 Query: 490 -RILGVPWGFLIGAELTIAQSRIS----------------LVNKIQKVYRSQGVQIHNRH 362 R+L G + A + + I LV +IQKVYR+QGV++H++H Sbjct: 1298 ARLLAKD-GDYVEAGQPLTRGAIDPHQLLEAKGPEAVERYLVEEIQKVYRAQGVKLHDKH 1356 Query: 361 IEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGITR 194 IEI++RQ+ V V++ G S + L G+++ E L + ++ +L+G+T+ Sbjct: 1357 IEIVVRQMMKYVEVTDPGDSRL-LEGQVLEKWDVEALNERLIAEGKTPVAWKPLLMGVTK 1415 Query: 193 ASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTG 41 ++L+T+S++S ASFQ T VL +AA+ G+ D L GLKENV+LG +IP GTG Sbjct: 1416 SALSTKSWLSAASFQNTTHVLTEAAIAGKKDELIGLKENVILGRLIPAGTG 1466
>RPOC_CHLTR (O84316) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1396 Score = 115 bits (287), Expect = 2e-25 Identities = 85/235 (36%), Positives = 123/235 (52%), Gaps = 44/235 (18%) Frame = -3 Query: 610 RSSDITQGLPKVEQIFEARS------IDSLSPNLERRIEDWNERI----PRILGVPWGFL 461 ++ DIT GLP+V ++ EAR I + ++ + N+RI I G+ L Sbjct: 1133 KTKDITGGLPRVAELVEARKPEDAADIAKIDGVVDFKGIQKNKRILVVRDEITGMEEEHL 1192 Query: 460 I----------------GAELT--------------IAQSRISLVNKIQKVYRSQGVQIH 371 I G +LT + + + LVN++Q+VYR QGV I+ Sbjct: 1193 ISLTKHLIVQRGDSVIKGQQLTDGLVVPHEILEICGVRELQKYLVNEVQEVYRLQGVDIN 1252 Query: 370 NRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRA----ILLG 203 ++H+EII+RQ+ KVR+++ G L GE + R +E A +LLG Sbjct: 1253 DKHVEIIVRQMLQKVRITDPG-DTTLLFGEDVDKKEFYEENRRTEEDGGKPAQAVPVLLG 1311 Query: 202 ITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGF 38 IT+ASL T+SFIS ASFQ+T RVL AA + D+L G KENV++G +IP GTGF Sbjct: 1312 ITKASLGTESFISAASFQDTTRVLTDAACSSKTDYLLGFKENVIMGHMIPGGTGF 1366
>RPOC_CHLTA (Q3KM48) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1396 Score = 115 bits (287), Expect = 2e-25 Identities = 85/235 (36%), Positives = 123/235 (52%), Gaps = 44/235 (18%) Frame = -3 Query: 610 RSSDITQGLPKVEQIFEARS------IDSLSPNLERRIEDWNERI----PRILGVPWGFL 461 ++ DIT GLP+V ++ EAR I + ++ + N+RI I G+ L Sbjct: 1133 KTKDITGGLPRVAELVEARKPEDAADIAKIDGVVDFKGIQKNKRILVVRDEITGMEEEHL 1192 Query: 460 I----------------GAELT--------------IAQSRISLVNKIQKVYRSQGVQIH 371 I G +LT + + + LVN++Q+VYR QGV I+ Sbjct: 1193 ISLTKHLIVQRGDSVIKGQQLTDGLVVPHEILEICGVRELQKYLVNEVQEVYRLQGVDIN 1252 Query: 370 NRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRA----ILLG 203 ++H+EII+RQ+ KVR+++ G L GE + R +E A +LLG Sbjct: 1253 DKHVEIIVRQMLQKVRITDPG-DTTLLFGEDVDKKEFYEENRRTEEDGGKPAQAVPVLLG 1311 Query: 202 ITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGF 38 IT+ASL T+SFIS ASFQ+T RVL AA + D+L G KENV++G +IP GTGF Sbjct: 1312 ITKASLGTESFISAASFQDTTRVLTDAACSSKTDYLLGFKENVIMGHMIPGGTGF 1366
>RPOC_CHLMU (Q9PK79) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1396 Score = 115 bits (287), Expect = 2e-25 Identities = 85/235 (36%), Positives = 123/235 (52%), Gaps = 44/235 (18%) Frame = -3 Query: 610 RSSDITQGLPKVEQIFEARS------IDSLSPNLERRIEDWNERI----PRILGVPWGFL 461 ++ DIT GLP+V ++ EAR I + ++ + N+RI + G+ L Sbjct: 1133 KTKDITGGLPRVAELVEARKPEDAADIAKIDGVVDFKGIQKNKRILVVRDEVTGMEEEHL 1192 Query: 460 I----------------GAELT--------------IAQSRISLVNKIQKVYRSQGVQIH 371 I G +LT + + + LVN++Q+VYR QGV I+ Sbjct: 1193 ISLTKHLIVQRGDSVIKGQQLTDGLVVPHEILEICGVRELQKYLVNEVQEVYRLQGVDIN 1252 Query: 370 NRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRA----ILLG 203 ++HIEII+RQ+ KVR+++ G L GE + R +E A +LLG Sbjct: 1253 DKHIEIIVRQMLQKVRITDPG-DTTLLFGEDVDKKEFYEENRRTEEDGGKPAQAVPVLLG 1311 Query: 202 ITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGF 38 IT+ASL T+SFIS ASFQ+T RVL AA + D+L G KENV++G +IP GTGF Sbjct: 1312 ITKASLGTESFISAASFQDTTRVLTDAACSSKTDYLLGFKENVIMGHMIPGGTGF 1366
>RPOC_DEHE1 (Q3Z8V3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1295 Score = 115 bits (287), Expect = 2e-25 Identities = 78/208 (37%), Positives = 122/208 (58%), Gaps = 4/208 (1%) Frame = -3 Query: 664 GEILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERIPRI 485 GE+ G L+T KY +S + +P QI + ++ DS+ +++ D + I Sbjct: 1070 GEVSVDGS-LITIKYSESEEREYA--IPAAMQI-KVKTGDSVRAG--QQLTDGSINPQDI 1123 Query: 484 LGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGM 305 L + +G + + LV ++QKVY SQGV I+++HIE+I RQ+ KVR+ G Sbjct: 1124 LSI-----LGRDAV----QKYLVEEVQKVYYSQGVHINDKHIEVIARQMLIKVRIDSSGD 1174 Query: 304 SNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGITRASLNTQSFISEASFQETAR 137 +++ +PGEL+ R E + E +L+GITRASL+T+S+++ ASFQET R Sbjct: 1175 TDL-VPGELVDKFRYEDINAKVLAEGGEPATAHTVLMGITRASLSTESWLAAASFQETTR 1233 Query: 136 VLAKAALRGRIDWLKGLKENVVLGGIIP 53 VL AA+ G++D L GLKENV++G +IP Sbjct: 1234 VLTDAAIYGKVDKLSGLKENVIIGKLIP 1261 Score = 30.0 bits (66), Expect = 6.7 Identities = 12/16 (75%), Positives = 15/16 (93%) Frame = -3 Query: 601 DITQGLPKVEQIFEAR 554 DIT GLP+VE++FEAR Sbjct: 970 DITTGLPRVEELFEAR 985
>RPOC_CHLPN (Q9Z999) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1393 Score = 115 bits (287), Expect = 2e-25 Identities = 65/133 (48%), Positives = 88/133 (66%), Gaps = 4/133 (3%) Frame = -3 Query: 421 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 242 LVN++Q+VYR QGV I+++HIEII+RQ+ KVR+++ G L GE + R Sbjct: 1234 LVNEVQEVYRLQGVDINDKHIEIIVRQMLQKVRITDPG-DTTLLFGEDVNKKEFYEENRR 1292 Query: 241 LDESIYYRA----ILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 74 +E A +LLGIT+ASL T+SFIS ASFQ+T RVL AA + D+L G KENV Sbjct: 1293 TEEDGGKPAQAVPVLLGITKASLGTESFISAASFQDTTRVLTDAACCSKTDYLLGFKENV 1352 Query: 73 VLGGIIPVGTGFQ 35 ++G +IP GTGF+ Sbjct: 1353 IMGHMIPGGTGFE 1365
>RPOC_AQUPY (Q9X6Y2) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1576 Score = 114 bits (286), Expect = 2e-25 Identities = 64/138 (46%), Positives = 94/138 (68%), Gaps = 7/138 (5%) Frame = -3 Query: 421 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG-------LLR 263 L+ ++Q VY+ QGV I+++H EIIIRQ+ KVR+ + G S FL GE + + R Sbjct: 1418 LLKEVQMVYKLQGVDINDKHFEIIIRQMLKKVRIIDPGDSR-FLVGEEVDKEELEEEIQR 1476 Query: 262 AERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLK 83 + G L ++ +L+GITRA+L+T+S+IS ASFQET RVL A++ G+ID L+GLK Sbjct: 1477 IKLEGGKLPKA---EPVLVGITRAALSTRSWISAASFQETTRVLTDASVEGKIDELRGLK 1533 Query: 82 ENVVLGGIIPVGTGFQKF 29 ENV++G +IP GTG ++ Sbjct: 1534 ENVIIGNLIPAGTGVDEY 1551 Score = 32.7 bits (73), Expect = 1.0 Identities = 15/31 (48%), Positives = 20/31 (64%) Frame = -3 Query: 646 GDRLVTFKYEKSRSSDITQGLPKVEQIFEAR 554 GD L E ++ DI GLP+VE++FEAR Sbjct: 1250 GDILARIPKETAKVRDIVGGLPRVEELFEAR 1280
>RPOC2_CHLVU (P12465) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1562 Score = 114 bits (286), Expect = 2e-25 Identities = 66/208 (31%), Positives = 122/208 (58%), Gaps = 7/208 (3%) Frame = -3 Query: 661 EILYKGDRLVTFKYEKSRSSDITQGLPKVEQIFEARSI---DSLSPNLERRIEDWNERIP 491 ++L K L+T + ++ ++ DI QG+PK+EQ+FEAR + + N+ R+ + Sbjct: 1353 DLLQKNHILMTLRSKQLQTEDIVQGIPKIEQLFEARETKDGEIIRYNMHFRLNSFFSLAK 1412 Query: 490 RILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSED 311 R+ FL +L++ + LV + + Y +QGV I +H+E+++RQ+T++VR++ Sbjct: 1413 RVKP----FLEAFDLSLLYIQRFLVKTLLEAYSNQGVNIAEKHVEVVVRQMTARVRITF- 1467 Query: 310 GMSNVFLPGELIGLLRAERAGRALDES----IYYRAILLGITRASLNTQSFISEASFQET 143 G LPGE I L E R+L E+ Y ++LG+T++ L ++SF+ ASFQ+ Sbjct: 1468 GKDTSLLPGEFIQLRLLEEINRSLVEAKKEPALYEPVILGLTKSVLQSESFLLAASFQQV 1527 Query: 142 ARVLAKAALRGRIDWLKGLKENVVLGGI 59 ++VL ++AL + D+L+GL + + + + Sbjct: 1528 SKVLVRSALATKTDFLRGLMKPLYVASL 1555
>RPOC_CHLAB (Q5L5I4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1393 Score = 114 bits (286), Expect = 2e-25 Identities = 84/235 (35%), Positives = 123/235 (52%), Gaps = 44/235 (18%) Frame = -3 Query: 610 RSSDITQGLPKVEQIFEARS------IDSLSPNLERRIEDWNERI----PRILGVPWGFL 461 ++ DIT GLP+V ++ EAR I + ++ + N+RI I G+ L Sbjct: 1131 KTKDITGGLPRVAELVEARKPEDAADIAKIDGVVDFKGIQKNKRILVVRDEITGMEEEHL 1190 Query: 460 I----------------GAELT--------------IAQSRISLVNKIQKVYRSQGVQIH 371 I G +LT + + + LVN++Q+VYR QGV I+ Sbjct: 1191 IPLTKHLIVQRGDHVMKGQQLTDGLVVPHEILEICGVRELQKYLVNEVQEVYRLQGVDIN 1250 Query: 370 NRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRA----ILLG 203 ++H+EII+RQ+ KVR+++ G L GE + + +E A +LLG Sbjct: 1251 DKHVEIIVRQMLQKVRITDPG-DTTLLFGEEVNKKEFYEENKRTEEEGGKPAQAVPVLLG 1309 Query: 202 ITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGF 38 IT+ASL T+SFIS ASFQ+T RVL AA + D+L G KENV++G +IP GTGF Sbjct: 1310 ITKASLGTESFISAASFQDTTRVLTDAACSSKTDYLLGFKENVIMGHMIPGGTGF 1364 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 101,213,219 Number of Sequences: 219361 Number of extensions: 2104099 Number of successful extensions: 6410 Number of sequences better than 10.0: 348 Number of HSP's better than 10.0 without gapping: 5710 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6143 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6598423128 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
