ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd15h22 |
|---|---|
| Clone Library Name | barley_pub |
>EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule-specific| protein homolog) (Latex allergen Hev b 13) Length = 391 Score = 128 bits (322), Expect(2) = 1e-38 Identities = 66/124 (53%), Positives = 77/124 (62%), Gaps = 7/124 (5%) Frame = -1 Query: 496 FNARLKEVVARLRVALPEAAFTYVDLYAAMYKLMSEAKKFGFGDPLRVCCGYGGGQYNFD 317 FN +LKE+VA+LR LP A F +VD+Y+ Y L SE +K GF PL CCGY GG+YNF Sbjct: 257 FNHKLKEIVAQLRKDLPLATFVHVDIYSVKYSLFSEPEKHGFEFPLITCCGY-GGKYNFS 315 Query: 316 KNIRCGDPVLGGK-------SCVDPSKSVSWDGVHLTEAAYKFIFDQIVDGALSDPPVPL 158 CGD V SC PS V+WDG H TEAA ++ FDQI GA SDPPVPL Sbjct: 316 VTAPCGDTVTADDGTKIVVGSCACPSVRVNWDGAHYTEAANEYFFDQISTGAFSDPPVPL 375 Query: 157 RRAC 146 AC Sbjct: 376 NMAC 379 Score = 51.6 bits (122), Expect(2) = 1e-38 Identities = 23/50 (46%), Positives = 31/50 (62%) Frame = -2 Query: 681 DLMERLESAIQTVYNLGGRYFWVHNTGTFGCLPYGLVYRPDLAGEKDDAG 532 DL+ + ++ +Y+LG R FW+HNTG GCL + L Y P EKD AG Sbjct: 198 DLVNSFSANVKKIYDLGARTFWIHNTGPIGCLSFILTYFP--WAEKDSAG 245
>FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51)| (Alpha-L-fucoside fucohydrolase 2) (Alpha-1,2-fucosidase) (AtFXG1) Length = 372 Score = 102 bits (253), Expect(2) = 2e-31 Identities = 54/111 (48%), Positives = 69/111 (62%), Gaps = 7/111 (6%) Frame = -1 Query: 496 FNARLKEVVARLRVALPEAAFTYVDLYAAMYKLMSEAKKFGFGDPLRVCCGYGGGQYNFD 317 FN LK+ V LR +L EAA TYVD+Y+ ++L A+ GF L CCG+ GG+YN++ Sbjct: 255 FNHALKQAVIELRSSLSEAAITYVDVYSLKHELFVHAQGHGFKGSLVSCCGH-GGKYNYN 313 Query: 316 KNIRC-------GDPVLGGKSCVDPSKSVSWDGVHLTEAAYKFIFDQIVDG 185 K I C G V GK C +P K+V WDGVH T+AA KFIFD+I G Sbjct: 314 KGIGCGMKKIVKGKEVYIGKPCDEPDKAVVWDGVHFTQAANKFIFDKIAPG 364 Score = 53.9 bits (128), Expect(2) = 2e-31 Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 4/61 (6%) Frame = -2 Query: 681 DLMERLESAIQTVYNLGGRYFWVHNTGTFGCLPYGLVYRPDLAGEKDDAG----LLHRAQ 514 +++ + +AI+ +Y GGRYFW+HNTG GCL Y + P+ A + D G L H AQ Sbjct: 194 EIISQFMNAIKNIYGQGGRYFWIHNTGPIGCLAYVIERFPNKASDFDSHGCVSPLNHLAQ 253 Query: 513 R 511 + Sbjct: 254 Q 254
>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor| Length = 534 Score = 55.1 bits (131), Expect = 2e-07 Identities = 33/124 (26%), Positives = 55/124 (44%) Frame = -1 Query: 577 PGLPTGPCRREG*RRAAPSRSTPGPRFFNARLKEVVARLRVALPEAAFTYVDLYAAMYKL 398 P L P +R ++ + FN++L ++ +L LP + F Y+D+Y + ++ Sbjct: 403 PPLGCVPSQRLKKKKICNEELNYASQLFNSKLLLILGQLSKTLPNSTFVYMDIYTIISQM 462 Query: 397 MSEAKKFGFGDPLRVCCGYGGGQYNFDKNIRCGDPVLGGKSCVDPSKSVSWDGVHLTEAA 218 + +GF + + CC G C K C + S + WDGVH T+ A Sbjct: 463 LETPAAYGFEETKKPCCKTG----LLSAGALCKKST--SKICPNTSSYLFWDGVHPTQRA 516 Query: 217 YKFI 206 YK I Sbjct: 517 YKTI 520
>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein CEX)| (Fragment) Length = 449 Score = 48.9 bits (115), Expect = 1e-05 Identities = 25/100 (25%), Positives = 51/100 (51%), Gaps = 3/100 (3%) Frame = -1 Query: 502 RFFNARLKEVVARLRVALPEAAFTYVDLYAAMYKLMSEAKKFGFGDPLRVCCGYG---GG 332 + FN++L ++ +L LP + Y D+Y+ K++ + +GF + + CC G GG Sbjct: 345 QLFNSKLVIILGQLSKTLPNSTIVYGDIYSIFSKMLESPEDYGFEEIKKPCCKIGLTKGG 404 Query: 331 QYNFDKNIRCGDPVLGGKSCVDPSKSVSWDGVHLTEAAYK 212 + ++ + K+ + S + WDG+H ++ AY+ Sbjct: 405 VFCKERTL---------KNMSNASSYLFWDGLHPSQRAYE 435
>CI066_HUMAN (Q5T8R8) Protein C9orf66| Length = 295 Score = 36.2 bits (82), Expect = 0.095 Identities = 26/65 (40%), Positives = 27/65 (41%), Gaps = 1/65 (1%) Frame = -3 Query: 347 RVRRRPIQLRQEHPVWRSGPGGEVVRGPVQE-RELGWGALDRSGLQVYLRPDRGRRSLRP 171 RVR R R HP WR+G GG RGP E WG R G LRP Sbjct: 197 RVRARSSDGRLRHPAWRAGSGGRGGRGPSAELASRYWGR---------RRALPGAADLRP 247 Query: 170 SGAFA 156 GA A Sbjct: 248 KGARA 252
>3BP1_HUMAN (Q9Y3L3) SH3 domain-binding protein 1 (3BP-1)| Length = 701 Score = 33.1 bits (74), Expect = 0.80 Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 1/58 (1%) Frame = -1 Query: 673 GEARVGDPDGVQPRREVLLGAQHGDVRVPPLRPGLPTGPCRREG*RR-AAPSRSTPGP 503 G G P + PRR L+G+ VPP P P P RR+ R A+PS ++PGP Sbjct: 595 GSGSPGTPQAL-PRR--LVGSSLRAPTVPPPLPPTPPQPARRQSRRSPASPSPASPGP 649
>HHIP_HUMAN (Q96QV1) Hedgehog-interacting protein precursor (HHIP) (HIP)| Length = 700 Score = 32.3 bits (72), Expect = 1.4 Identities = 26/112 (23%), Positives = 42/112 (37%), Gaps = 10/112 (8%) Frame = -1 Query: 493 NARLKEVVARLRVALPEAAFTYVDLYAAMYKLMSEAKKFGFGDPLRVCCGYGGGQYNFDK 314 N +L ++V R +PE V + S + G+ P CC G + +F + Sbjct: 576 NGKLYKIVDPKRPLMPEECRATVQPAQTLTSECSRLCRNGYCTPTGKCCCSPGWEGDFCR 635 Query: 313 NIRCGDPVLGGKSCVDPSKSVSWDGV----------HLTEAAYKFIFDQIVD 188 +C G CV P+K + G ++ I DQI+D Sbjct: 636 TAKCEPACRHGGVCVRPNKCLCKKGYLGPQCEQVDRNIRRVTRAGILDQIID 687
>ATX2_MOUSE (O70305) Ataxin-2 (Spinocerebellar ataxia type 2 protein homolog)| Length = 1285 Score = 31.6 bits (70), Expect = 2.3 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = +3 Query: 270 THDFPPRTGSPHRMFLSKLYWPPPYPQHTRR 362 T DF P GS R+ + WP P P H+ R Sbjct: 501 TSDFNPNAGSDQRVVNGGVPWPSPCPSHSSR 531
>IL29_HUMAN (Q8IU54) Interleukin-29 precursor (IL-29) (Interferon lambda-1)| (IFN-lambda-1) (Cytokine ZCYTO21) Length = 200 Score = 31.2 bits (69), Expect = 3.1 Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 9/76 (11%) Frame = -3 Query: 512 AGPPVLQRPAQGGRGEA*GRSXXXXXXXXXXXXXXVQADERSQKVRFWGSSA-------- 357 AGP +P G+G GR A E S K++ W S+ Sbjct: 19 AGPVPTSKPTTTGKGCHIGRFKSLSPQELASFKKARDALEESLKLKNWSCSSPVFPGNWD 78 Query: 356 -RVLRVRRRPIQLRQE 312 R+L+VR RP+ L E Sbjct: 79 LRLLQVRERPVALEAE 94
>NOC2L_HUMAN (Q9Y3T9) Nucleolar complex protein 2 homolog (NOC2 protein homolog)| Length = 749 Score = 31.2 bits (69), Expect = 3.1 Identities = 34/130 (26%), Positives = 51/130 (39%), Gaps = 17/130 (13%) Frame = +3 Query: 84 RKKSYIRSLINEHHVHCPLPWQARRKGTGGSERAPSTIWSKINL*AASVKCTPS------ 245 RKK +S+ N +VHC W G SE ++ + +K P+ Sbjct: 395 RKKETYQSVYNWQYVHCLFLWCRVLSTAGPSEALQPLVYPLAQVIIGCIKLIPTARFYPL 454 Query: 246 ------QLTLLDGSTHDFPPRTGSPHRMFLSKLYWPPPYPQHTRRGSPKP-NFLASL--- 395 LTLL GS+ F P F+ +++ + + R S KP NF L Sbjct: 455 RMHCIRALTLLSGSSGAF-----IPVLPFILEMFQQVDFNRKPGRMSSKPINFSVILKLS 509 Query: 396 -ISLYMAAYR 422 ++L AYR Sbjct: 510 NVNLQEKAYR 519
>DNE23_AGRT5 (Q8U642) Error-prone DNA polymerase 3 (EC 2.7.7.7)| Length = 1087 Score = 30.4 bits (67), Expect = 5.2 Identities = 31/109 (28%), Positives = 36/109 (33%) Frame = -3 Query: 374 FWGSSARVLRVRRRPIQLRQEHPVWRSGPGGEVVRGPVQERELGWGALDRSGLQVYLRPD 195 F+ +V VR PIQ HP R G E V P E E G L V L + Sbjct: 591 FYDLVVQVAIVRPGPIQGDMVHPYLRRREGKEAVEYPTPELEAVLG----KTLGVPLFQE 646 Query: 194 RGRRSLRPSGAFASGLPGQRAMNMMFIN*TADVGFFSDVRTPNKICNEY 48 R F G Q +M T V F D + N Y Sbjct: 647 SAMRVAMVCAGFTGGEADQLRKSMATFKFTGGVSQFKDKLVSGMVRNGY 695
>Y290_LAMBD (P03766) Hypothetical nin region protein ORF290| Length = 290 Score = 30.0 bits (66), Expect = 6.8 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Frame = -1 Query: 481 KEVVARLRVALPEAAFTYVDL-YAAMYKLMSEAKKFGFGDPLRVCCGYGGGQYNFD 317 KE++ R R++L A Y + Y A+Y+ M AK+F G C GGQ +FD Sbjct: 230 KEIMYRGRMSLDGIAKMYSENDYQALYQDMVRAKRFDTGS-CSESCEIFGGQLDFD 284
>HHIP_MOUSE (Q7TN16) Hedgehog-interacting protein precursor (HHIP) (HIP)| Length = 700 Score = 30.0 bits (66), Expect = 6.8 Identities = 26/112 (23%), Positives = 42/112 (37%), Gaps = 10/112 (8%) Frame = -1 Query: 493 NARLKEVVARLRVALPEAAFTYVDLYAAMYKLMSEAKKFGFGDPLRVCCGYGGGQYNFDK 314 N +L ++V R +PE V + S + G+ P CC G + +F + Sbjct: 576 NGKLYKIVDPKRPLMPEECRVTVQPAQPLTSDCSRLCRNGYYTPTGKCCCSPGWEGDFCR 635 Query: 313 NIRCGDPVLGGKSCVDPSKSVSWDGV----------HLTEAAYKFIFDQIVD 188 +C G CV P+K + G ++ I DQI+D Sbjct: 636 IAKCEPACRHGGVCVRPNKCLCKKGYLGPQCEQVDRNVRRVTRAGILDQIID 687
>DNE22_RHIME (Q92ZJ6) Error-prone DNA polymerase 2 (EC 2.7.7.7)| Length = 1087 Score = 29.6 bits (65), Expect = 8.9 Identities = 32/109 (29%), Positives = 37/109 (33%) Frame = -3 Query: 374 FWGSSARVLRVRRRPIQLRQEHPVWRSGPGGEVVRGPVQERELGWGALDRSGLQVYLRPD 195 F+ +V VR PIQ HP R G E V P E E A+ L V L + Sbjct: 591 FYDLVIQVAIVRPGPIQGDMVHPYLRRREGKEKVEYPTPELE----AVLHKTLGVPLFQE 646 Query: 194 RGRRSLRPSGAFASGLPGQRAMNMMFIN*TADVGFFSDVRTPNKICNEY 48 R F G Q +M T V F D I N Y Sbjct: 647 SAMRVAMVCAGFTGGEADQLRKSMATFKFTGGVSRFKDKLVNGMIRNGY 695
>DNE22_AGRT5 (Q8UKK2) Error-prone DNA polymerase 2 (EC 2.7.7.7)| Length = 1085 Score = 29.6 bits (65), Expect = 8.9 Identities = 31/109 (28%), Positives = 36/109 (33%) Frame = -3 Query: 374 FWGSSARVLRVRRRPIQLRQEHPVWRSGPGGEVVRGPVQERELGWGALDRSGLQVYLRPD 195 F+ +V VR PIQ HP R G E V P E E G L V L + Sbjct: 591 FYDLVVQVAIVRPGPIQGDMVHPYLRRREGKEPVEYPTPELEAVLG----KTLGVPLFQE 646 Query: 194 RGRRSLRPSGAFASGLPGQRAMNMMFIN*TADVGFFSDVRTPNKICNEY 48 R F G Q +M T V F D + N Y Sbjct: 647 SAMRVAMVCAGFTGGEADQLRKSMATFKFTGGVSRFKDKLVSGMVKNGY 695
>TRUB_PROMM (P59881) tRNA pseudouridine synthase B (EC 5.4.99.-) (tRNA| pseudouridine 55 synthase) (Psi55 synthase) (tRNA-uridine isomerase) (tRNA pseudouridylate synthase) Length = 320 Score = 29.6 bits (65), Expect = 8.9 Identities = 14/37 (37%), Positives = 20/37 (54%) Frame = -3 Query: 242 WGALDRSGLQVYLRPDRGRRSLRPSGAFASGLPGQRA 132 W L+ + ++ YL P RGR RP A + G+RA Sbjct: 93 WPELNTAEIEAYLEPFRGRIQQRPPQVSAVHVQGERA 129 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 98,660,455 Number of Sequences: 219361 Number of extensions: 2209416 Number of successful extensions: 7493 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 6853 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7484 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6712189044 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
