ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd15h13 |
|---|---|
| Clone Library Name | barley_pub |
>SCFD2_HUMAN (Q8WU76) Sec1 family domain-containing protein 2 (Syntaxin-binding| protein 1-like 1) Length = 684 Score = 48.5 bits (114), Expect = 2e-05 Identities = 36/107 (33%), Positives = 60/107 (56%), Gaps = 2/107 (1%) Frame = -3 Query: 614 SRKGLLYKLILAVL--TRFDIPGLEYHSSAVGRLFKSGLGRFGLGQSKPNFGDQSFLIVF 441 S K LL +++ + R D +E+ SS + L K+G F + S+P+ D LI+F Sbjct: 571 SYKPLLKQVVEEIFHPERPDSVDIEHMSSGLTDLLKTGFSMF-MKVSRPHPSDYPLLILF 629 Query: 440 VVGGINTLEVREVMKAISESGRPDVQLILGGTTLLTPDDMFELMLGS 300 VVGG+ EV+ ++K + S +P Q+I+ T LL P ++ EL+ + Sbjct: 630 VVGGVTVSEVK-MVKDLVASLKPGTQVIVLSTRLLKPLNIPELLFAT 675
>SCFD2_MOUSE (Q8BTY8) Sec1 family domain-containing protein 2 (Syntaxin-binding| protein 1-like 1) (Neuronal Sec1) Length = 684 Score = 45.8 bits (107), Expect = 1e-04 Identities = 33/107 (30%), Positives = 59/107 (55%), Gaps = 2/107 (1%) Frame = -3 Query: 614 SRKGLLYKLILAVLT--RFDIPGLEYHSSAVGRLFKSGLGRFGLGQSKPNFGDQSFLIVF 441 S K LL +++ + + D +E+ SS + L K+G F + S+P+ D LI+F Sbjct: 571 SYKPLLKQVVEEIFNPEKSDPIDIEHMSSGLTDLLKTGFSMF-MKVSRPHPSDHPLLILF 629 Query: 440 VVGGINTLEVREVMKAISESGRPDVQLILGGTTLLTPDDMFELMLGS 300 VVGG+ E + ++K + S +P Q+++ T LL P ++ EL+ + Sbjct: 630 VVGGVTVAEAK-MVKDLVASLKPGTQVMVLSTRLLKPLNIPELLFAT 675
>STXB3_HUMAN (O00186) Syntaxin-binding protein 3 (UNC-18 homolog 3) (UNC-18C)| (UNC-18-3) (Platelet Sec1 protein) (PSP) Length = 592 Score = 32.3 bits (72), Expect = 1.1 Identities = 18/48 (37%), Positives = 26/48 (54%) Frame = -3 Query: 458 SFLIVFVVGGINTLEVREVMKAISESGRPDVQLILGGTTLLTPDDMFE 315 S LIVFV+GGI EVR + ++I+G T +LTP + + Sbjct: 529 SKLIVFVIGGITYSEVRGAYEV--SQAHKSCEVIIGSTHVLTPKKLLD 574
>STXB1_RAT (P61765) Syntaxin-binding protein 1 (Unc-18 homolog) (Unc-18A)| (Unc-18-1) (N-Sec1) (rbSec1) (p67) Length = 594 Score = 32.0 bits (71), Expect = 1.5 Identities = 14/48 (29%), Positives = 30/48 (62%) Frame = -3 Query: 452 LIVFVVGGINTLEVREVMKAISESGRPDVQLILGGTTLLTPDDMFELM 309 LI+F++GG++ E+R + +G+ +V ++G T +LTP + + + Sbjct: 537 LIIFILGGVSLNEMRCAYEVTQANGKWEV--LIGSTHILTPQKLLDTL 582
>STXB1_MOUSE (O08599) Syntaxin-binding protein 1 (Unc-18 homolog) (Unc-18A)| (Unc-18-1) Length = 594 Score = 32.0 bits (71), Expect = 1.5 Identities = 14/48 (29%), Positives = 30/48 (62%) Frame = -3 Query: 452 LIVFVVGGINTLEVREVMKAISESGRPDVQLILGGTTLLTPDDMFELM 309 LI+F++GG++ E+R + +G+ +V ++G T +LTP + + + Sbjct: 537 LIIFILGGVSLNEMRCAYEVTQANGKWEV--LIGSTHILTPQKLLDTL 582
>STXB1_HUMAN (P61764) Syntaxin-binding protein 1 (Unc-18 homolog) (Unc-18A)| (Unc-18-1) (N-Sec1) (p67) Length = 594 Score = 32.0 bits (71), Expect = 1.5 Identities = 14/48 (29%), Positives = 30/48 (62%) Frame = -3 Query: 452 LIVFVVGGINTLEVREVMKAISESGRPDVQLILGGTTLLTPDDMFELM 309 LI+F++GG++ E+R + +G+ +V ++G T +LTP + + + Sbjct: 537 LIIFILGGVSLNEMRCAYEVTQANGKWEV--LIGSTHILTPQKLLDTL 582
>STXB1_BOVIN (P61763) Syntaxin-binding protein 1 (Unc-18 homolog) (Unc-18A)| (Unc-18-1) (N-Sec1) (p67) Length = 594 Score = 32.0 bits (71), Expect = 1.5 Identities = 14/48 (29%), Positives = 30/48 (62%) Frame = -3 Query: 452 LIVFVVGGINTLEVREVMKAISESGRPDVQLILGGTTLLTPDDMFELM 309 LI+F++GG++ E+R + +G+ +V ++G T +LTP + + + Sbjct: 537 LIIFILGGVSLNEMRCAYEVTQANGKWEV--LIGSTHILTPQKLLDTL 582
>UBP11_MOUSE (Q99K46) Ubiquitin carboxyl-terminal hydrolase 11 (EC 3.1.2.15)| (Ubiquitin thioesterase 11) (Ubiquitin-specific-processing protease 11) (Deubiquitinating enzyme 11) (Fragment) Length = 797 Score = 31.6 bits (70), Expect = 1.9 Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 4/66 (6%) Frame = -3 Query: 545 YHSSAVGRLFKSGLGRFGLGQSKPNFGDQSFLIVFVVGGI----NTLEVREVMKAISESG 378 YH S V +FK+ +G F D L+ F++ G+ N ++ +E ++ + +G Sbjct: 197 YHRSIVPNVFKNKVGHFASQFLGYQQHDSQELLSFLLDGLHEDLNRVKKKEYVELCNGAG 256 Query: 377 RPDVQL 360 RPD+++ Sbjct: 257 RPDLEV 262
>NHR49_CAEEL (O45666) Nuclear hormone receptor family member nhr-49| Length = 501 Score = 30.0 bits (66), Expect = 5.7 Identities = 17/51 (33%), Positives = 26/51 (50%) Frame = +1 Query: 298 DEPNINSNMSSGVRRVVPPRMSCTSGLPLSEIAFMTSRTSRVLMPPTTKTM 450 ++ +I SG PP CT+ + L+EI SRT+ +LM KT+ Sbjct: 196 NDTDIQQGSDSGASAFAPPNRPCTTEVDLNEI----SRTTLLLMVEWAKTI 242
>STXB3_MOUSE (Q60770) Syntaxin-binding protein 3 (UNC-18 homolog 3) (UNC-18C)| (MUNC-18-3) Length = 592 Score = 30.0 bits (66), Expect = 5.7 Identities = 16/48 (33%), Positives = 26/48 (54%) Frame = -3 Query: 458 SFLIVFVVGGINTLEVREVMKAISESGRPDVQLILGGTTLLTPDDMFE 315 S LI+FV+GGI E+R + ++I+G T +LTP + + Sbjct: 530 SRLIIFVIGGITYSEMRCAYEV--SQAHKSCEVIIGSTHILTPRKLLD 575
>VPS45_RAT (O08700) Vacuolar protein sorting-associated protein 45 (rvps45)| Length = 570 Score = 30.0 bits (66), Expect = 5.7 Identities = 18/51 (35%), Positives = 26/51 (50%) Frame = -3 Query: 452 LIVFVVGGINTLEVREVMKAISESGRPDVQLILGGTTLLTPDDMFELMLGS 300 +IVFV+GG E V + P V+++LGGTT+ E +L S Sbjct: 502 IIVFVIGGATYEEALTVYNLNRTT--PGVRIVLGGTTIHNTKSFLEEVLAS 550
>VPS45_MOUSE (P97390) Vacuolar protein sorting-associated protein 45 (mVps45)| Length = 570 Score = 29.6 bits (65), Expect = 7.4 Identities = 17/51 (33%), Positives = 26/51 (50%) Frame = -3 Query: 452 LIVFVVGGINTLEVREVMKAISESGRPDVQLILGGTTLLTPDDMFELMLGS 300 +IVF++GG E V + P V+++LGGTT+ E +L S Sbjct: 502 IIVFIIGGATYEEALTVYNLNRTT--PGVRIVLGGTTIHNTKSFLEEVLAS 550
>VPS45_HUMAN (Q9NRW7) Vacuolar protein sorting-associated protein 45 (h-VPS45)| (hlVps45) Length = 570 Score = 29.6 bits (65), Expect = 7.4 Identities = 18/51 (35%), Positives = 26/51 (50%) Frame = -3 Query: 452 LIVFVVGGINTLEVREVMKAISESGRPDVQLILGGTTLLTPDDMFELMLGS 300 +IVFV+GG E V + P V+++LGGTT+ E +L S Sbjct: 502 IIVFVIGGATYEEALTVYNLNRTT--PGVRIVLGGTTVHNTKSFLEEVLAS 550
>HBD_BACSU (P45856) Probable 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)| (Beta-hydroxybutyryl-CoA dehydrogenase) (BHBD) Length = 287 Score = 29.3 bits (64), Expect = 9.7 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 3/40 (7%) Frame = +1 Query: 316 SNMSSGVRRVVPPRM---SCTSGLPLSEIAFMTSRTSRVL 426 + M + R+ PP S TS LP++EIA +T+R RV+ Sbjct: 98 TEMFKTLDRICPPHTILASNTSSLPITEIAAVTNRPQRVI 137 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 87,235,401 Number of Sequences: 219361 Number of extensions: 1758258 Number of successful extensions: 3822 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 3758 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3817 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5596027262 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
