>TRI47_HUMAN (Q96LD4) Tripartite motif protein 47 (Gene overexpressed in|
           astrocytoma protein) (RING finger protein 100)
          Length = 638

 Score = 36.2 bits (82), Expect = 0.083
 Identities = 28/88 (31%), Positives = 36/88 (40%), Gaps = 5/88 (5%)
 Frame = -3

Query: 578 PDNAAHSPNSSEASPTG-----RRKLADLLQEATRNDTGEXXXXXXXAEPDSSKSGQQAV 414
           P  AA  P   E  P G        L++LLQ    +  G          P+ S       
Sbjct: 48  PGGAARCPLCQEPFPDGLQLRKNHTLSELLQLRQGSGPGSGPGPAPALAPEPS------- 100

Query: 413 APAAGKSVSEPSSGCSTEPTPVREARIR 330
           AP+A  SV EPS+ C+ EP P  E  +R
Sbjct: 101 APSALPSVPEPSAPCAPEPWPAGEEPVR 128

>MMPL3_MYCTU (O53657) Putative membrane protein mmpL3|
          Length = 944

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 22/72 (30%), Positives = 28/72 (38%)
 Frame = -3

Query: 566  AHSPNSSEASPTGRRKLADLLQEATRNDTGEXXXXXXXAEPDSSKSGQQAVAPAAGKSVS 387
            A SP  + +SP    +L   L EAT              +  SS         AAG+SV 
Sbjct: 793  AESPRPARSSPASSPELTPAL-EATAAPAAPSGASTTRMQIGSSTEPPTTRLAAAGRSVQ 851

Query: 386  EPSSGCSTEPTP 351
             P+S     PTP
Sbjct: 852  SPASTPPPTPTP 863

>ERF2_CANAL (O13354) Eukaryotic peptide chain release factor GTP-binding|
           subunit (ERF2) (Translation release factor 3)
           (Polypeptide release factor 3) (ERF3) (ERF-3)
          Length = 715

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 24/114 (21%), Positives = 42/114 (36%)
 Frame = -3

Query: 596 MSNVFLPDNAAHSPNSSEASPTGRRKLADLLQEATRNDTGEXXXXXXXAEPDSSKSGQQA 417
           ++N     +    P S E+SP      A     A + +  E           + ++ ++ 
Sbjct: 165 LANATKKVDTTSKPQSKESSPAPA-PAASASASAPQEEKKEEKEAAAATPAAAPETKKET 223

Query: 416 VAPAAGKSVSEPSSGCSTEPTPVREARIRKERAWYSGRCCLPTFVHSLAALDDE 255
            APA  K  + P+     E TP+  A  +KE    S    + T    +   +DE
Sbjct: 224 SAPAETKKEATPTPAAKNESTPIPAAAAKKESTPVSNSASVATADALVKEQEDE 277

>SAM68_CHICK (Q8UUW7) KH domain-containing, RNA-binding, signal|
           transduction-associated protein 1 (Src-associated in
           mitosis 68 kDa protein) (Sam68)
          Length = 433

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 17/41 (41%), Positives = 19/41 (46%)
 Frame = +3

Query: 210 RQSDGAGPGARLLPPLVV*GGQAVDEGWQAAAAGVPGPLFP 332
           R   G G GA+   PL+  G  A   G Q  AA  P PL P
Sbjct: 33  RGGGGRGAGAQHPQPLLTGGAAAGSSGAQGPAAANPAPLLP 73

>PQIA_SHIFL (P0AFM1) Paraquat-inducible protein A|
          Length = 417

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 10/18 (55%), Positives = 16/18 (88%)
 Frame = +3

Query: 45  NSLEWTIRLIITSIFIYI 98
           NSL+WT+ L++TSI +Y+
Sbjct: 251 NSLQWTLALLVTSIMLYL 268

>PQIA_ECOLI (P0AFL9) Paraquat-inducible protein A|
          Length = 417

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 10/18 (55%), Positives = 16/18 (88%)
 Frame = +3

Query: 45  NSLEWTIRLIITSIFIYI 98
           NSL+WT+ L++TSI +Y+
Sbjct: 251 NSLQWTLALLVTSIMLYL 268

>PQIA_ECOL6 (P0AFM0) Paraquat-inducible protein A|
          Length = 417

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 10/18 (55%), Positives = 16/18 (88%)
 Frame = +3

Query: 45  NSLEWTIRLIITSIFIYI 98
           NSL+WT+ L++TSI +Y+
Sbjct: 251 NSLQWTLALLVTSIMLYL 268


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,267,615
Number of Sequences: 219361
Number of extensions: 1482478
Number of successful extensions: 4357
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4349
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5881538857
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)