Clone Name | rbasd15h08 |
---|---|
Clone Library Name | barley_pub |
>TRI47_HUMAN (Q96LD4) Tripartite motif protein 47 (Gene overexpressed in| astrocytoma protein) (RING finger protein 100) Length = 638 Score = 36.2 bits (82), Expect = 0.083 Identities = 28/88 (31%), Positives = 36/88 (40%), Gaps = 5/88 (5%) Frame = -3 Query: 578 PDNAAHSPNSSEASPTG-----RRKLADLLQEATRNDTGEXXXXXXXAEPDSSKSGQQAV 414 P AA P E P G L++LLQ + G P+ S Sbjct: 48 PGGAARCPLCQEPFPDGLQLRKNHTLSELLQLRQGSGPGSGPGPAPALAPEPS------- 100 Query: 413 APAAGKSVSEPSSGCSTEPTPVREARIR 330 AP+A SV EPS+ C+ EP P E +R Sbjct: 101 APSALPSVPEPSAPCAPEPWPAGEEPVR 128
>MMPL3_MYCTU (O53657) Putative membrane protein mmpL3| Length = 944 Score = 30.8 bits (68), Expect = 3.5 Identities = 22/72 (30%), Positives = 28/72 (38%) Frame = -3 Query: 566 AHSPNSSEASPTGRRKLADLLQEATRNDTGEXXXXXXXAEPDSSKSGQQAVAPAAGKSVS 387 A SP + +SP +L L EAT + SS AAG+SV Sbjct: 793 AESPRPARSSPASSPELTPAL-EATAAPAAPSGASTTRMQIGSSTEPPTTRLAAAGRSVQ 851 Query: 386 EPSSGCSTEPTP 351 P+S PTP Sbjct: 852 SPASTPPPTPTP 863
>ERF2_CANAL (O13354) Eukaryotic peptide chain release factor GTP-binding| subunit (ERF2) (Translation release factor 3) (Polypeptide release factor 3) (ERF3) (ERF-3) Length = 715 Score = 30.8 bits (68), Expect = 3.5 Identities = 24/114 (21%), Positives = 42/114 (36%) Frame = -3 Query: 596 MSNVFLPDNAAHSPNSSEASPTGRRKLADLLQEATRNDTGEXXXXXXXAEPDSSKSGQQA 417 ++N + P S E+SP A A + + E + ++ ++ Sbjct: 165 LANATKKVDTTSKPQSKESSPAPA-PAASASASAPQEEKKEEKEAAAATPAAAPETKKET 223 Query: 416 VAPAAGKSVSEPSSGCSTEPTPVREARIRKERAWYSGRCCLPTFVHSLAALDDE 255 APA K + P+ E TP+ A +KE S + T + +DE Sbjct: 224 SAPAETKKEATPTPAAKNESTPIPAAAAKKESTPVSNSASVATADALVKEQEDE 277
>SAM68_CHICK (Q8UUW7) KH domain-containing, RNA-binding, signal| transduction-associated protein 1 (Src-associated in mitosis 68 kDa protein) (Sam68) Length = 433 Score = 30.4 bits (67), Expect = 4.6 Identities = 17/41 (41%), Positives = 19/41 (46%) Frame = +3 Query: 210 RQSDGAGPGARLLPPLVV*GGQAVDEGWQAAAAGVPGPLFP 332 R G G GA+ PL+ G A G Q AA P PL P Sbjct: 33 RGGGGRGAGAQHPQPLLTGGAAAGSSGAQGPAAANPAPLLP 73
>PQIA_SHIFL (P0AFM1) Paraquat-inducible protein A| Length = 417 Score = 30.0 bits (66), Expect = 6.0 Identities = 10/18 (55%), Positives = 16/18 (88%) Frame = +3 Query: 45 NSLEWTIRLIITSIFIYI 98 NSL+WT+ L++TSI +Y+ Sbjct: 251 NSLQWTLALLVTSIMLYL 268
>PQIA_ECOLI (P0AFL9) Paraquat-inducible protein A| Length = 417 Score = 30.0 bits (66), Expect = 6.0 Identities = 10/18 (55%), Positives = 16/18 (88%) Frame = +3 Query: 45 NSLEWTIRLIITSIFIYI 98 NSL+WT+ L++TSI +Y+ Sbjct: 251 NSLQWTLALLVTSIMLYL 268
>PQIA_ECOL6 (P0AFM0) Paraquat-inducible protein A| Length = 417 Score = 30.0 bits (66), Expect = 6.0 Identities = 10/18 (55%), Positives = 16/18 (88%) Frame = +3 Query: 45 NSLEWTIRLIITSIFIYI 98 NSL+WT+ L++TSI +Y+ Sbjct: 251 NSLQWTLALLVTSIMLYL 268 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 79,267,615 Number of Sequences: 219361 Number of extensions: 1482478 Number of successful extensions: 4357 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 4151 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4349 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5881538857 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)