>CESAA_ARATH (Q9SKJ5) Probable cellulose synthase A catalytic subunit 10|
            [UDP-forming] (EC 2.4.1.12) (AtCesA-10) (AtCesA-13)
          Length = 1065

 Score =  160 bits (404), Expect = 4e-39
 Identities = 77/127 (60%), Positives = 94/127 (74%)
 Frame = -2

Query: 664  VLQGLLKVIAGIEISFTLTSKSGADDENDEFADLYIVKWTSLMIPPIVIMMVNLIAIAVG 485
            V QGLLKV AGI+ +FT+TSK  A DE+ +FA+LY+ KWTSL+IPP  I++VNL+ I  G
Sbjct: 926  VFQGLLKVFAGIDTNFTVTSK--ASDEDGDFAELYVFKWTSLLIPPTTILLVNLVGIVAG 983

Query: 484  FSRTIYSEIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLLAITISL 305
             S  I S    W  L+G + F+FWV+AHLYPF KGL+GR+ RTPTIV VWS LLA   SL
Sbjct: 984  VSYAINSGYQSWGPLMGKLLFAFWVVAHLYPFLKGLLGRQNRTPTIVIVWSALLASIFSL 1043

Query: 304  LWVAINP 284
            LWV INP
Sbjct: 1044 LWVRINP 1050

>CESA1_ARATH (O48946) Cellulose synthase A catalytic subunit 1 [UDP-forming] (EC|
            2.4.1.12) (AtCesA-1) (Radially swollen protein 1)
            (AtRSW1)
          Length = 1081

 Score =  157 bits (398), Expect = 2e-38
 Identities = 76/127 (59%), Positives = 94/127 (74%)
 Frame = -2

Query: 664  VLQGLLKVIAGIEISFTLTSKSGADDENDEFADLYIVKWTSLMIPPIVIMMVNLIAIAVG 485
            V QGLLKV+AGI+ +FT+TSK  A DE+ +FA+LYI KWT+L+IPP  +++VNLI I  G
Sbjct: 939  VFQGLLKVLAGIDTNFTVTSK--ATDEDGDFAELYIFKWTALLIPPTTVLLVNLIGIVAG 996

Query: 484  FSRTIYSEIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLLAITISL 305
             S  + S    W  L G +FF+ WV+AHLYPF KGL+GR+ RTPTIV VWS LLA   SL
Sbjct: 997  VSYAVNSGYQSWGPLFGKLFFALWVIAHLYPFLKGLLGRQNRTPTIVIVWSVLLASIFSL 1056

Query: 304  LWVAINP 284
            LWV INP
Sbjct: 1057 LWVRINP 1063

>CESA3_ARATH (Q941L0) Cellulose synthase A catalytic subunit 3 [UDP-forming] (EC|
            2.4.1.12) (AtCesA-3) (Constitutive expression of VSP1
            protein 1) (Isoxaben resistant protein 1) (Ath-B)
          Length = 1065

 Score =  155 bits (391), Expect = 1e-37
 Identities = 73/127 (57%), Positives = 94/127 (74%)
 Frame = -2

Query: 664  VLQGLLKVIAGIEISFTLTSKSGADDENDEFADLYIVKWTSLMIPPIVIMMVNLIAIAVG 485
            V QG+LKV+AGI+ +FT+TSK  A DE+ +FA+LY+ KWT+L+IPP  +++VNL+ +  G
Sbjct: 924  VFQGILKVLAGIDTNFTVTSK--ASDEDGDFAELYLFKWTTLLIPPTTLLIVNLVGVVAG 981

Query: 484  FSRTIYSEIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLLAITISL 305
             S  I S    W  L G +FF+FWV+ HLYPF KGLMGR+ RTPTIV VWS LLA   SL
Sbjct: 982  VSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSVLLASIFSL 1041

Query: 304  LWVAINP 284
            LWV I+P
Sbjct: 1042 LWVRIDP 1048

>CESA4_ARATH (Q84JA6) Cellulose synthase A catalytic subunit 4 [UDP-forming] (EC|
            2.4.1.12) (AtCesA-4) (Irregular xylem protein 5) (AtIRX5)
          Length = 1049

 Score =  152 bits (383), Expect = 1e-36
 Identities = 70/127 (55%), Positives = 93/127 (73%)
 Frame = -2

Query: 664  VLQGLLKVIAGIEISFTLTSKSGADDENDEFADLYIVKWTSLMIPPIVIMMVNLIAIAVG 485
            V QGLLKV+ G++ +FT+TSK GA DE DEF DLY+ KWT+L+IPP  ++++N++ +  G
Sbjct: 907  VFQGLLKVLFGVDTNFTVTSK-GASDEADEFGDLYLFKWTTLLIPPTTLIILNMVGVVAG 965

Query: 484  FSRTIYSEIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLLAITISL 305
             S  I +    W  L G +FF+FWV+ HLYPF KGLMGR+ RTPTIV +WS LLA   SL
Sbjct: 966  VSDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSILLASIFSL 1025

Query: 304  LWVAINP 284
            +WV I+P
Sbjct: 1026 VWVRIDP 1032

>CESA7_ARATH (Q9SWW6) Cellulose synthase A catalytic subunit 7 [UDP-forming] (EC|
            2.4.1.12) (AtCesA-7) (Irregular xylem protein 3) (AtIRX3)
          Length = 1026

 Score =  149 bits (377), Expect = 6e-36
 Identities = 68/127 (53%), Positives = 92/127 (72%)
 Frame = -2

Query: 664  VLQGLLKVIAGIEISFTLTSKSGADDENDEFADLYIVKWTSLMIPPIVIMMVNLIAIAVG 485
            V+QGLLK++AGI+ +FT+TSK+  DD+   F +LY  KWT+L+IPP  ++++N++ +  G
Sbjct: 886  VVQGLLKILAGIDTNFTVTSKATDDDD---FGELYAFKWTTLLIPPTTVLIINIVGVVAG 942

Query: 484  FSRTIYSEIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLLAITISL 305
             S  I +    W  L G +FFSFWV+ HLYPF KGLMGR+ RTPTIV +WS LLA   SL
Sbjct: 943  ISDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSL 1002

Query: 304  LWVAINP 284
            LWV I+P
Sbjct: 1003 LWVRIDP 1009

>CESA8_ARATH (Q8LPK5) Cellulose synthase A catalytic subunit 8 [UDP-forming] (EC|
            2.4.1.12) (AtCesA-8) (Irregular xylem protein 1) (AtIRX1)
          Length = 985

 Score =  149 bits (376), Expect = 7e-36
 Identities = 71/127 (55%), Positives = 93/127 (73%)
 Frame = -2

Query: 664  VLQGLLKVIAGIEISFTLTSKSGADDENDEFADLYIVKWTSLMIPPIVIMMVNLIAIAVG 485
            V QG LK++AG++ +FT+TSK+ ADD   EF +LYIVKWT+L+IPP  ++++NL+ +  G
Sbjct: 843  VFQGFLKMLAGLDTNFTVTSKT-ADDL--EFGELYIVKWTTLLIPPTSLLIINLVGVVAG 899

Query: 484  FSRTIYSEIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLLAITISL 305
            FS  +      W  L G VFF+FWV+ HLYPF KGLMGR+ RTPTIV +WS LLA   SL
Sbjct: 900  FSDALNKGYEAWGPLFGKVFFAFWVILHLYPFLKGLMGRQNRTPTIVILWSILLASVFSL 959

Query: 304  LWVAINP 284
            +WV INP
Sbjct: 960  VWVRINP 966

>CESA5_ARATH (Q8L778) Cellulose synthase A catalytic subunit 5 [UDP-forming] (EC|
            2.4.1.12) (AtCesA-5)
          Length = 1069

 Score =  147 bits (372), Expect = 2e-35
 Identities = 69/127 (54%), Positives = 95/127 (74%)
 Frame = -2

Query: 664  VLQGLLKVIAGIEISFTLTSKSGADDENDEFADLYIVKWTSLMIPPIVIMMVNLIAIAVG 485
            + QGLLKV+AG+E +FT+TSK+ ADD   EF++LYI KWTSL+IPP  ++++N+I + VG
Sbjct: 929  LFQGLLKVLAGVETNFTVTSKA-ADD--GEFSELYIFKWTSLLIPPTTLLIINVIGVIVG 985

Query: 484  FSRTIYSEIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLLAITISL 305
             S  I +    W  L G +FF+FWV+ HLYPF KGL+G++ R PTI+ VWS LLA  ++L
Sbjct: 986  ISDAISNGYDSWGPLFGRLFFAFWVILHLYPFLKGLLGKQDRMPTIILVWSILLASILTL 1045

Query: 304  LWVAINP 284
            LWV +NP
Sbjct: 1046 LWVRVNP 1052

>CESA6_ARATH (Q94JQ6) Cellulose synthase A catalytic subunit 6 [UDP-forming] (EC|
            2.4.1.12) (AtCesA-6) (Isoxaben resistant protein 2)
            (Protein PROCUSTE1) (Protein Quill) (AraxCelA)
          Length = 1084

 Score =  145 bits (365), Expect = 1e-34
 Identities = 67/127 (52%), Positives = 95/127 (74%)
 Frame = -2

Query: 664  VLQGLLKVIAGIEISFTLTSKSGADDENDEFADLYIVKWTSLMIPPIVIMMVNLIAIAVG 485
            + QGLLKV+AG++ +FT+TSK+ ADD   EF+DLY+ KWTSL+IPP+ ++++N+I + VG
Sbjct: 944  LFQGLLKVLAGVDTNFTVTSKA-ADD--GEFSDLYLFKWTSLLIPPMTLLIINVIGVIVG 1000

Query: 484  FSRTIYSEIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLLAITISL 305
             S  I +    W  L G +FF+ WV+ HLYPF KGL+G++ R PTI+ VWS LLA  ++L
Sbjct: 1001 VSDAISNGYDSWGPLFGRLFFALWVIIHLYPFLKGLLGKQDRMPTIIVVWSILLASILTL 1060

Query: 304  LWVAINP 284
            LWV +NP
Sbjct: 1061 LWVRVNP 1067

>CESA9_ARATH (Q9SJ22) Probable cellulose synthase A catalytic subunit 9|
            [UDP-forming] (EC 2.4.1.12) (AtCesA-9)
          Length = 1088

 Score =  144 bits (362), Expect = 3e-34
 Identities = 66/127 (51%), Positives = 93/127 (73%)
 Frame = -2

Query: 664  VLQGLLKVIAGIEISFTLTSKSGADDENDEFADLYIVKWTSLMIPPIVIMMVNLIAIAVG 485
            + QGLLKV+AG+  +FT+TSK+ ADD   EF++LYI KWTSL+IPP  ++++N++ + VG
Sbjct: 947  LFQGLLKVLAGVSTNFTVTSKA-ADD--GEFSELYIFKWTSLLIPPTTLLIINIVGVIVG 1003

Query: 484  FSRTIYSEIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLLAITISL 305
             S  I +    W  L G +FF+ WV+ HLYPF KGL+G++ R PTI+ VWS LLA  ++L
Sbjct: 1004 VSDAINNGYDSWGPLFGRLFFALWVIVHLYPFLKGLLGKQDRVPTIILVWSILLASILTL 1063

Query: 304  LWVAINP 284
            LWV +NP
Sbjct: 1064 LWVRVNP 1070

>CESA2_ARATH (O48947) Cellulose synthase A catalytic subunit 2 [UDP-forming] (EC|
            2.4.1.12) (AtCesA-2) (Ath-A)
          Length = 1084

 Score =  138 bits (347), Expect = 2e-32
 Identities = 63/127 (49%), Positives = 92/127 (72%)
 Frame = -2

Query: 664  VLQGLLKVIAGIEISFTLTSKSGADDENDEFADLYIVKWTSLMIPPIVIMMVNLIAIAVG 485
            + QGLLKV+AG+  +FT+TSK+ ADD    F++LYI KWT+L+IPP  ++++N+I + VG
Sbjct: 943  LFQGLLKVLAGVNTNFTVTSKA-ADD--GAFSELYIFKWTTLLIPPTTLLIINIIGVIVG 999

Query: 484  FSRTIYSEIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLLAITISL 305
             S  I +    W  L G +FF+ WV+ HLYPF KG++G++ + PTI+ VWS LLA  ++L
Sbjct: 1000 VSDAISNGYDSWGPLFGRLFFALWVIVHLYPFLKGMLGKQDKMPTIIVVWSILLASILTL 1059

Query: 304  LWVAINP 284
            LWV +NP
Sbjct: 1060 LWVRVNP 1066

>1A1D_CRYNE (Q5KMX3) Probable 1-aminocyclopropane-1-carboxylate deaminase (EC|
           3.5.99.7) (ACC deaminase) (ACCD)
          Length = 345

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -2

Query: 382 GLMGRRGRTPTIVFVWSGLLAITISLLWVAINPP 281
           G+     R  T V V SGL A+T+   WV I+PP
Sbjct: 82  GVQSNHTRAVTAVAVASGLKAVTVQEKWVPIDPP 115

>FOXB2_MOUSE (Q64733) Forkhead box protein B2 (Transcription factor FKH-4)|
          Length = 428

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 17/56 (30%), Positives = 19/56 (33%)
 Frame = -1

Query: 542 PHDPTHCHHDGQPHRHSCRLQPHHLQRDPAVEQAPGRCLLQLLGTGSPVPICQGPH 375
           PH P H HH    H H+     HH    P     P    +       P P  Q PH
Sbjct: 138 PHHPHHAHHHHHHHHHAAHHHHHHHPPQPPPPPPPH---MVPYFHQQPAPAPQPPH 190

>HRPX_PLALO (P04929) Histidine-rich glycoprotein precursor|
          Length = 351

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = -1

Query: 542 PHDPTHCHHDGQPHRHSCRLQPHH 471
           PH   H HH   PH H     PHH
Sbjct: 88  PHHEEHHHHHPHPHHHHHHHPPHH 111

>PO3F2_RAT (P56222) POU domain, class 3, transcription factor 2 (Nervous|
           system-specific octamer-binding transcription factor
           N-Oct-3) (Brain-specific homeobox/POU domain protein 2)
           (Brain-2) (Protein Brn-2)
          Length = 445

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 20/61 (32%), Positives = 22/61 (36%)
 Frame = -1

Query: 533 PTHCHHDGQPHRHSCRLQPHHLQRDPAVEQAPGRCLLQLLGTGSPVPICQGPHGAPRAHA 354
           P   HH G    H    +PHH    P     P +          P P  QGP G P AH 
Sbjct: 209 PAGLHHHGLRDAHD---EPHHADHHPHPHSHPHQ-------QPPPPPPPQGPPGHPGAHH 258

Query: 353 D 351
           D
Sbjct: 259 D 259

>PO3F2_MOUSE (P31360) POU domain, class 3, transcription factor 2 (Nervous|
           system-specific octamer-binding transcription factor
           N-Oct-3) (Brain-specific homeobox/POU domain protein 2)
           (Brain-2) (Protein Brn-2)
          Length = 445

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 20/61 (32%), Positives = 22/61 (36%)
 Frame = -1

Query: 533 PTHCHHDGQPHRHSCRLQPHHLQRDPAVEQAPGRCLLQLLGTGSPVPICQGPHGAPRAHA 354
           P   HH G    H    +PHH    P     P +          P P  QGP G P AH 
Sbjct: 209 PAGLHHHGLRDAHD---EPHHADHHPHPHSHPHQ-------QPPPPPPPQGPPGHPGAHH 258

Query: 353 D 351
           D
Sbjct: 259 D 259

>PO3F2_HUMAN (P20265) POU domain, class 3, transcription factor 2 (Nervous|
           system-specific octamer-binding transcription factor
           N-Oct-3) (Brain-specific homeobox/POU domain protein 2)
           (Brain-2) (Protein Brn-2)
          Length = 443

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 20/61 (32%), Positives = 22/61 (36%)
 Frame = -1

Query: 533 PTHCHHDGQPHRHSCRLQPHHLQRDPAVEQAPGRCLLQLLGTGSPVPICQGPHGAPRAHA 354
           P   HH G    H    +PHH    P     P +          P P  QGP G P AH 
Sbjct: 207 PAGLHHHGLRDAHD---EPHHADHHPHPHSHPHQ-------QPPPPPPPQGPPGHPGAHH 256

Query: 353 D 351
           D
Sbjct: 257 D 257

>RCEL_RHOPA (O83005) Reaction center protein L chain (Photosynthetic reaction|
           center L subunit)
          Length = 276

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 8/69 (11%)
 Frame = -2

Query: 442 LLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFV--------WSGLLAITISLLWVAIN 287
           L+GG  F FWV     PF  G+ G      T+ F         W+  L  T +L  +++N
Sbjct: 16  LIGGDLFDFWV----GPFYVGIFG----VMTVFFALIGIALIAWNTALGPTWNLWQISVN 67

Query: 286 PPSQNSQIG 260
           PP     +G
Sbjct: 68  PPDAKYGLG 76

>NORB_PSEST (P98008) Nitric-oxide reductase subunit B (EC 1.7.99.7) (Nitric|
           oxide reductase cytochrome b subunit) (NOR large
           subunit)
          Length = 473

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 451 WSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIV 344
           W + + GVFF   ++ +LY F      +RGR P +V
Sbjct: 437 WLRFIAGVFFLIGLVCYLYSFR-----QRGRVPVVV 467

>RCEL_RHOSH (P0C0Y8) Reaction center protein L chain (Photosynthetic reaction|
           center L subunit)
          Length = 281

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
 Frame = -2

Query: 442 LLGGVFFSFWVLAHLYPFAKGLMGRR----GRTPTIVFVWSGLLAITISLLWVAINPPSQ 275
           L+GG  F FWV     PF  G  G           I+  WS +L  T +   +++ PP+ 
Sbjct: 16  LVGGNLFDFWV----GPFYVGFFGVATFFFAALGIILIAWSAVLQGTWNPQLISVYPPAL 71

Query: 274 NSQIGGS 254
              +GG+
Sbjct: 72  EYGLGGA 78

>RCEL_RHOS4 (Q3J1A5) Reaction center protein L chain (Photosynthetic reaction|
           center L subunit)
          Length = 281

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
 Frame = -2

Query: 442 LLGGVFFSFWVLAHLYPFAKGLMGRR----GRTPTIVFVWSGLLAITISLLWVAINPPSQ 275
           L+GG  F FWV     PF  G  G           I+  WS +L  T +   +++ PP+ 
Sbjct: 16  LVGGNLFDFWV----GPFYVGFFGVATFFFAALGIILIAWSAVLQGTWNPQLISVYPPAL 71

Query: 274 NSQIGGS 254
              +GG+
Sbjct: 72  EYGLGGA 78


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,457,634
Number of Sequences: 219361
Number of extensions: 1784163
Number of successful extensions: 5173
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 4857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5109
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6427774254
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)