ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd15g19 |
|---|---|
| Clone Library Name | barley_pub |
>MURG_COXBU (Q820X3) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)| pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase) Length = 358 Score = 33.5 bits (75), Expect = 0.66 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 3/50 (6%) Frame = -3 Query: 702 GAGVFSKSPKETAELVAHWFGPGSEDRKR---MSENALKLAQPEAVFDIV 562 GA + T + WF ++DR R M+ENA KLA+PEAV ++ Sbjct: 299 GAAIIISEESLTETDLMRWFEQFAQDRDRLLTMAENARKLAKPEAVQRVI 348
>CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long-chain collagen)| (LC collagen) Length = 2944 Score = 31.6 bits (70), Expect = 2.5 Identities = 18/36 (50%), Positives = 21/36 (58%) Frame = -2 Query: 631 RGPQENVGERVEIGPAGSRVRHRQGHPRALPGARGE 524 RGP+ G++ E GP G RV G P A PG RGE Sbjct: 2733 RGPEGLQGQKGERGPPGERVVGAPGVPGA-PGERGE 2767
>CO1A2_BOVIN (P02465) Collagen alpha-2(I) chain precursor| Length = 1364 Score = 31.6 bits (70), Expect = 2.5 Identities = 18/50 (36%), Positives = 24/50 (48%) Frame = -2 Query: 673 GNRRTCRPLVRSRLRGPQENVGERVEIGPAGSRVRHRQGHPRALPGARGE 524 G+R P + GP+ + GER E+GPAG PGA+GE Sbjct: 689 GDRGEAGPAGPAGPAGPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGE 738
>CO1A2_CANFA (O46392) Collagen alpha-2(I) chain precursor| Length = 1366 Score = 31.2 bits (69), Expect = 3.3 Identities = 18/50 (36%), Positives = 23/50 (46%) Frame = -2 Query: 673 GNRRTCRPLVRSRLRGPQENVGERVEIGPAGSRVRHRQGHPRALPGARGE 524 G+R P + GP+ GER E+GPAG PGA+GE Sbjct: 691 GDRGEAGPAGPAGPAGPRGTPGERGEVGPAGPNGFAGPAGAAGQPGAKGE 740
>FMT_STRAW (Q827P7) Methionyl-tRNA formyltransferase (EC 2.1.2.9)| Length = 310 Score = 30.8 bits (68), Expect = 4.3 Identities = 23/94 (24%), Positives = 40/94 (42%) Frame = +2 Query: 422 LPRLHTSGMGLGQWLLASGDGMKKDDVRELEICAFTPCSWESSWMSLTMSNTASGWANFN 601 L RL +G GL L+A+ DG+++ ++ + P + +T+ N W+ Sbjct: 166 LTRLAFAGSGL---LVATMDGVEEGKLKAVP----QPADGITLAPKITVENAHVDWSTPA 218 Query: 602 AFSDILLRSSEPGPNQWATSSAVSLGLLENTPAP 703 D ++R P P W L L++ P P Sbjct: 219 LRVDRVVRGCTPAPGAWTVFRGERLKLIQVVPVP 252
>SAP1_YEAST (P39955) Protein SAP1| Length = 897 Score = 30.4 bits (67), Expect = 5.6 Identities = 22/87 (25%), Positives = 38/87 (43%) Frame = +2 Query: 62 NLHDKKIQSTKLSVADKPTTGYPPMCK*GTVKE*CSTNDTFFHKLYSNTILHKSAFQSKQ 241 N+ IQS + P+ PP+ V ST H L ++T + S ++ Q Sbjct: 323 NVPGSCIQSLPTTAPALPSLPPPPLLN---VDRASSTGALKPHSLETSTTMDSSKIRNPQ 379 Query: 242 AHKIFRNSGIPHEQTTLKSPRQEMKQT 322 K+ +N+ +P+ + T +P K T Sbjct: 380 ISKLMKNNHVPYLKGTKSTPTLITKST 406
>CO1A2_HUMAN (P08123) Collagen alpha-2(I) chain precursor| Length = 1366 Score = 30.4 bits (67), Expect = 5.6 Identities = 15/35 (42%), Positives = 19/35 (54%) Frame = -2 Query: 628 GPQENVGERVEIGPAGSRVRHRQGHPRALPGARGE 524 GP+ + GER E+GPAG PGA+GE Sbjct: 706 GPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGE 740
>CO9A1_CHICK (P12106) Collagen alpha-1(IX) chain precursor| Length = 920 Score = 30.4 bits (67), Expect = 5.6 Identities = 16/45 (35%), Positives = 20/45 (44%) Frame = -2 Query: 631 RGPQENVGERVEIGPAGSRVRHRQGHPRALPGARGEGADLQLPDI 497 +GP+ G GP GSR P LPG G D+ LP + Sbjct: 607 QGPEGEAGPTGPRGPPGSRGEPGPAGPPGLPGKWGPQGDIGLPGL 651
>MRCKG_HUMAN (Q6DT37) Serine/threonine-protein kinase MRCK gamma (EC 2.7.11.1)| (CDC42-binding protein kinase gamma) (Myotonic dystrophy kinase-related CDC42-binding kinase gamma) (Myotonic dystrophy protein kinase-like alpha) (MRCK gamma) (DMPK-like gamma Length = 1551 Score = 30.4 bits (67), Expect = 5.6 Identities = 18/52 (34%), Positives = 24/52 (46%) Frame = -2 Query: 706 QRRRRVLQEPQGNRRTCRPLVRSRLRGPQENVGERVEIGPAGSRVRHRQGHP 551 Q+RR +L++P VRS+L P N V +GPA R R P Sbjct: 1421 QQRREMLKDP---------FVRSKLISPPTNFNHLVHVGPANGRPGARDKSP 1463
>MURG_BURPS (Q63QJ7) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)| pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase) Length = 367 Score = 30.4 bits (67), Expect = 5.6 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Frame = -3 Query: 708 DNGAGVFSKSPKETAELVAHWF-GPGSEDRKRMSENALKLAQPEAVFDIVR 559 + GA V + +AEL+A W G + M+E + LA+P+A ++ R Sbjct: 303 EQGAAVLVQQRDLSAELLADWLRGQSRDSLAAMAERSRSLAKPDATDEVAR 353
>MURG_BURP1 (Q3JND8) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)| pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase) Length = 367 Score = 30.4 bits (67), Expect = 5.6 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Frame = -3 Query: 708 DNGAGVFSKSPKETAELVAHWF-GPGSEDRKRMSENALKLAQPEAVFDIVR 559 + GA V + +AEL+A W G + M+E + LA+P+A ++ R Sbjct: 303 EQGAAVLVQQRDLSAELLADWLRGQSRDSLAAMAERSRSLAKPDATDEVAR 353
>MURG_BURMA (Q62GS7) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)| pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase) Length = 367 Score = 30.4 bits (67), Expect = 5.6 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Frame = -3 Query: 708 DNGAGVFSKSPKETAELVAHWF-GPGSEDRKRMSENALKLAQPEAVFDIVR 559 + GA V + +AEL+A W G + M+E + LA+P+A ++ R Sbjct: 303 EQGAAVLVQQRDLSAELLADWLRGQSRDSLAAMAERSRSLAKPDATDEVAR 353
>CO1A2_RAT (P02466) Collagen alpha-2(I) chain precursor| Length = 1372 Score = 30.4 bits (67), Expect = 5.6 Identities = 15/35 (42%), Positives = 19/35 (54%) Frame = -2 Query: 628 GPQENVGERVEIGPAGSRVRHRQGHPRALPGARGE 524 GP+ + GER E+GPAG PGA+GE Sbjct: 712 GPRGSPGERGEVGPAGPNGFAGPAGSAGQPGAKGE 746
>CO1A2_MOUSE (Q01149) Collagen alpha-2(I) chain precursor| Length = 1372 Score = 30.4 bits (67), Expect = 5.6 Identities = 15/35 (42%), Positives = 19/35 (54%) Frame = -2 Query: 628 GPQENVGERVEIGPAGSRVRHRQGHPRALPGARGE 524 GP+ + GER E+GPAG PGA+GE Sbjct: 712 GPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGE 746
>MEOX1_MOUSE (P32442) Homeobox protein MOX-1 (Mesenchyme homeobox 1)| Length = 253 Score = 30.0 bits (66), Expect = 7.3 Identities = 14/37 (37%), Positives = 18/37 (48%) Frame = -2 Query: 625 PQENVGERVEIGPAGSRVRHRQGHPRALPGARGEGAD 515 P G+R+ +GPAGS G P + G G G D Sbjct: 95 PISEAGQRLNLGPAGSAREMGAGSPGLVDGTAGLGED 131
>CO9A1_RAT (P20850) Collagen alpha-1(IX) chain (Fragment)| Length = 325 Score = 30.0 bits (66), Expect = 7.3 Identities = 17/40 (42%), Positives = 22/40 (55%) Frame = -2 Query: 634 LRGPQENVGERVEIGPAGSRVRHRQGHPRALPGARGEGAD 515 LRGP+ ++GE+ E GP G P+ LPGA G D Sbjct: 234 LRGPKGDLGEKGERGPPGR-------GPKGLPGAIGLPGD 266
>ROL6_CAEEL (P20784) Cuticle collagen rol-6 (Protein roller-6)| Length = 348 Score = 30.0 bits (66), Expect = 7.3 Identities = 17/45 (37%), Positives = 19/45 (42%) Frame = -2 Query: 655 RPLVRSRLRGPQENVGERVEIGPAGSRVRHRQGHPRALPGARGEG 521 RPL R RGP G GP G Q P+ PG +G G Sbjct: 258 RPLGRPGPRGPPGEAGPEGPQGPTGRDAYPGQSGPQGEPGLQGYG 302
>CO9A1_MOUSE (Q05722) Collagen alpha-1(IX) chain precursor| Length = 921 Score = 30.0 bits (66), Expect = 7.3 Identities = 17/40 (42%), Positives = 22/40 (55%) Frame = -2 Query: 634 LRGPQENVGERVEIGPAGSRVRHRQGHPRALPGARGEGAD 515 LRGP+ ++GE+ E GP G P+ LPGA G D Sbjct: 830 LRGPKGDLGEKGERGPPGR-------GPKGLPGAIGLPGD 862
>MURG_BACTN (Q8A258) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)| pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase) Length = 372 Score = 29.6 bits (65), Expect = 9.5 Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 2/61 (3%) Frame = -3 Query: 708 DNGAGVFSKSPKETAELVAHWFGPGSEDRK--RMSENALKLAQPEAVFDIVRDIHELSQE 535 D A ++ K + A+L+ ++DRK +SEN KLA P++ I +++ +L++ Sbjct: 311 DKQAAIYVKDSEAEAKLMDVALNTVADDRKLKELSENIAKLALPDSARIIAQEVIKLAEA 370 Query: 534 Q 532 + Sbjct: 371 E 371
>NALDL_HUMAN (Q9UQQ1) N-acetylated-alpha-linked acidic dipeptidase-like protein| (EC 3.4.17.21) (NAALADase L) (Ileal dipeptidylpeptidase) (100 kDa ileum brush border membrane protein) (I100) Length = 740 Score = 29.6 bits (65), Expect = 9.5 Identities = 16/54 (29%), Positives = 27/54 (50%) Frame = +2 Query: 176 DTFFHKLYSNTILHKSAFQSKQAHKIFRNSGIPHEQTTLKSPRQEMKQTGPNHL 337 + FF+KL T+ + + S A+ R G P Q+ + S +E++ GP L Sbjct: 428 EEFFNKLQERTVAYINVDISVFANATLRVQGTPPVQSVVFSATKEIRSPGPGDL 481 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 111,199,329 Number of Sequences: 219361 Number of extensions: 2515566 Number of successful extensions: 8199 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 7302 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 8157 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7196276819 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
