Clone Name | rbasd15g16 |
---|---|
Clone Library Name | barley_pub |
>NOLA3_ARATH (Q93XX8) H/ACA ribonucleoprotein complex subunit 3-like protein| Length = 64 Score = 85.1 bits (209), Expect = 4e-17 Identities = 39/50 (78%), Positives = 44/50 (88%) Frame = -3 Query: 322 YTTKKESPLGVPTQSAHPARFSPDDKYARQRYLLKKRFGLLPTQQPAQKY 173 YTTKKESPLG+ T+SAHPARFSPDDKY++QR LLKKRFGLLPTQ +Y Sbjct: 15 YTTKKESPLGLATESAHPARFSPDDKYSKQRVLLKKRFGLLPTQNAPLQY 64
>NOP10_SCHPO (Q9P7M5) H/ACA ribonucleoprotein complex subunit 3 (Nucleolar| protein family A member 3) (snoRNP protein nop10) Length = 64 Score = 72.4 bits (176), Expect = 3e-13 Identities = 35/50 (70%), Positives = 40/50 (80%) Frame = -3 Query: 322 YTTKKESPLGVPTQSAHPARFSPDDKYARQRYLLKKRFGLLPTQQPAQKY 173 YT KK SP G T+S+HPARFSPDDKY+RQRY LKKRF +L TQ PA+ Y Sbjct: 15 YTLKKVSPDGRVTKSSHPARFSPDDKYSRQRYTLKKRFHVLLTQLPAKPY 64
>NOLA3_BRARE (Q6DRH5) H/ACA ribonucleoprotein complex subunit 3 (Nucleolar| protein family A member 3) Length = 64 Score = 71.6 bits (174), Expect = 5e-13 Identities = 33/46 (71%), Positives = 36/46 (78%) Frame = -3 Query: 322 YTTKKESPLGVPTQSAHPARFSPDDKYARQRYLLKKRFGLLPTQQP 185 YT KK P G PT SAHPARFSPDDK++R R +KKRFGLL TQQP Sbjct: 15 YTLKKVDPSGQPTSSAHPARFSPDDKFSRHRVTIKKRFGLLLTQQP 60
>NOLA3_DROME (Q9V5P6) H/ACA ribonucleoprotein complex subunit 3 (Nucleolar| protein family A member 3) (snoRNP protein dNop10) Length = 64 Score = 68.9 bits (167), Expect = 3e-12 Identities = 33/50 (66%), Positives = 38/50 (76%) Frame = -3 Query: 322 YTTKKESPLGVPTQSAHPARFSPDDKYARQRYLLKKRFGLLPTQQPAQKY 173 YT KK + G PT SAHPARFSP+DKY+RQR +KKRFGLL TQ+P Y Sbjct: 15 YTLKKRTEDGRPTLSAHPARFSPEDKYSRQRLTIKKRFGLLLTQKPEPIY 64
>NOP10_DEBHA (Q6BQP3) H/ACA ribonucleoprotein complex subunit 3 (Nucleolar| protein family A member 3) (snoRNP protein NOP10) Length = 58 Score = 66.6 bits (161), Expect = 1e-11 Identities = 32/44 (72%), Positives = 35/44 (79%) Frame = -3 Query: 322 YTTKKESPLGVPTQSAHPARFSPDDKYARQRYLLKKRFGLLPTQ 191 YT K + G T+SAHPARFSPDDKY+RQR LKKRFGLLPTQ Sbjct: 15 YTLNKTTSDGEITKSAHPARFSPDDKYSRQRVTLKKRFGLLPTQ 58
>NOLA3_MOUSE (Q9CQS2) H/ACA ribonucleoprotein complex subunit 3 (Nucleolar| protein family A member 3) (snoRNP protein NOP10) Length = 64 Score = 66.2 bits (160), Expect = 2e-11 Identities = 31/46 (67%), Positives = 35/46 (76%) Frame = -3 Query: 322 YTTKKESPLGVPTQSAHPARFSPDDKYARQRYLLKKRFGLLPTQQP 185 YT KK P+G T SAHPARFSPDDKY+R R +KKRF +L TQQP Sbjct: 15 YTLKKFDPMGQQTCSAHPARFSPDDKYSRHRITIKKRFKVLMTQQP 60
>NOLA3_HUMAN (Q9NPE3) H/ACA ribonucleoprotein complex subunit 3 (Nucleolar| protein family A member 3) (snoRNP protein NOP10) Length = 64 Score = 66.2 bits (160), Expect = 2e-11 Identities = 31/46 (67%), Positives = 35/46 (76%) Frame = -3 Query: 322 YTTKKESPLGVPTQSAHPARFSPDDKYARQRYLLKKRFGLLPTQQP 185 YT KK P+G T SAHPARFSPDDKY+R R +KKRF +L TQQP Sbjct: 15 YTLKKFDPMGQQTCSAHPARFSPDDKYSRHRITIKKRFKVLMTQQP 60
>NOP10_YEAST (Q6Q547) H/ACA ribonucleoprotein complex subunit 3 (Nucleolar| protein family A member 3) (snoRNP protein NOP10) Length = 58 Score = 65.1 bits (157), Expect = 4e-11 Identities = 31/44 (70%), Positives = 35/44 (79%) Frame = -3 Query: 322 YTTKKESPLGVPTQSAHPARFSPDDKYARQRYLLKKRFGLLPTQ 191 YT KK + G T+SAHPARFSPDDKY+RQR LKKRFGL+P Q Sbjct: 15 YTLKKVTESGEITKSAHPARFSPDDKYSRQRVTLKKRFGLVPGQ 58
>NOP10_ASHGO (Q74Z52) H/ACA ribonucleoprotein complex subunit 3 (Nucleolar| protein family A member 3) (snoRNP protein NOP10) Length = 57 Score = 62.0 bits (149), Expect = 4e-10 Identities = 28/42 (66%), Positives = 34/42 (80%) Frame = -3 Query: 322 YTTKKESPLGVPTQSAHPARFSPDDKYARQRYLLKKRFGLLP 197 YT +K +P G T+SAHPARFSPDDKY+RQR LK+RF +LP Sbjct: 15 YTLEKVTPSGEITKSAHPARFSPDDKYSRQRVTLKRRFDMLP 56
>NOLA3_CAEEL (Q9XVR8) Putative H/ACA ribonucleoprotein complex subunit 3-like| protein Length = 64 Score = 62.0 bits (149), Expect = 4e-10 Identities = 27/45 (60%), Positives = 36/45 (80%) Frame = -3 Query: 322 YTTKKESPLGVPTQSAHPARFSPDDKYARQRYLLKKRFGLLPTQQ 188 YT K+ +P G T +AHPARFSP+DK ++ R ++KKRFGLLPTQ+ Sbjct: 15 YTLKRTAPSGEQTLTAHPARFSPEDKNSKYRIIIKKRFGLLPTQK 59
>NOP10_CANGA (Q6FNL3) H/ACA ribonucleoprotein complex subunit 3 (Nucleolar| protein family A member 3) (snoRNP protein NOP10) Length = 57 Score = 61.2 bits (147), Expect = 6e-10 Identities = 29/42 (69%), Positives = 33/42 (78%) Frame = -3 Query: 322 YTTKKESPLGVPTQSAHPARFSPDDKYARQRYLLKKRFGLLP 197 YT KK + G T+SAHPARFSPDDKY+RQR LKKR+ LLP Sbjct: 15 YTLKKMTEEGEITKSAHPARFSPDDKYSRQRVTLKKRYNLLP 56
>NOLA3_TRYCR (Q6JZK2) H/ACA ribonucleoprotein complex subunit 3-like protein| (Ribosome biogenesis protein Nop10) Length = 63 Score = 59.7 bits (143), Expect = 2e-09 Identities = 27/45 (60%), Positives = 33/45 (73%) Frame = -3 Query: 322 YTTKKESPLGVPTQSAHPARFSPDDKYARQRYLLKKRFGLLPTQQ 188 YT KK P G PT SAHPARFSPDDKY+R R +K+RF L +++ Sbjct: 14 YTLKKMDPEGKPTLSAHPARFSPDDKYSRHRITIKRRFKALKSEK 58
>NOP10_KLULA (Q6CSZ0) H/ACA ribonucleoprotein complex subunit 3 (Nucleolar| protein family A member 3) (snoRNP protein NOP10) Length = 57 Score = 58.5 bits (140), Expect = 4e-09 Identities = 28/42 (66%), Positives = 32/42 (76%) Frame = -3 Query: 322 YTTKKESPLGVPTQSAHPARFSPDDKYARQRYLLKKRFGLLP 197 YT KK + T+SAHPARFSPDDKY+RQR LKKR+ LLP Sbjct: 15 YTLKKMTEDNEITKSAHPARFSPDDKYSRQRVTLKKRYNLLP 56
>NOP10_SULTO (Q973G1) Ribosome biogenesis protein Nop10| Length = 56 Score = 39.3 bits (90), Expect = 0.002 Identities = 20/37 (54%), Positives = 23/37 (62%), Gaps = 1/37 (2%) Frame = -3 Query: 322 YTTKKESPL-GVPTQSAHPARFSPDDKYARQRYLLKK 215 YT K P+ G PT HPARFSP DKY + R +KK Sbjct: 14 YTLKDICPICGTPTIIPHPARFSPVDKYVKYRIEIKK 50
>NOP10_PYRAE (Q8ZTY6) Ribosome biogenesis protein Nop10| Length = 72 Score = 36.6 bits (83), Expect = 0.016 Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 2/63 (3%) Frame = -3 Query: 322 YTTKKES--PLGVPTQSAHPARFSPDDKYARQRYLLKKRFGLLPTQQPAQKY*STEWVLL 149 YT K+ G + HP +FSP+DKY + R L K G LP + T+ LL Sbjct: 14 YTLSKDKCPRCGGAVRVPHPPKFSPEDKYQKYRILQKLLMGKLPIRD------ETKERLL 67 Query: 148 RDL 140 RDL Sbjct: 68 RDL 70
>NOP10_PYRAB (Q9V0E3) Ribosome biogenesis protein Nop10| Length = 60 Score = 36.6 bits (83), Expect = 0.016 Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 1/37 (2%) Frame = -3 Query: 322 YTTKKESPL-GVPTQSAHPARFSPDDKYARQRYLLKK 215 YT K+ P+ G T+ AHP RFSP+D Y R LK+ Sbjct: 14 YTLKETCPVCGEKTKVAHPPRFSPEDPYGEYRRRLKR 50
>NOP10_PYRKO (Q5JE48) Ribosome biogenesis protein Nop10| Length = 59 Score = 36.2 bits (82), Expect = 0.021 Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 1/37 (2%) Frame = -3 Query: 322 YTTKKESPL-GVPTQSAHPARFSPDDKYARQRYLLKK 215 YT K+ P+ G T+ AHP RFSP+D Y R LK+ Sbjct: 14 YTLKEVCPVCGSETKVAHPPRFSPEDPYGEYRRRLKR 50
>NOP10_SULSO (Q97Z78) Ribosome biogenesis protein Nop10| Length = 56 Score = 34.7 bits (78), Expect = 0.062 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%) Frame = -3 Query: 322 YTTKKESPL-GVPTQSAHPARFSPDDKYARQRYLLKK 215 YT K + G T HP+RFSP+DKY + R LKK Sbjct: 14 YTFKDTCQICGSKTVIPHPSRFSPEDKYVKYRIELKK 50
>NOP10_PYRFU (Q8U1R4) Ribosome biogenesis protein Nop10| Length = 60 Score = 33.9 bits (76), Expect = 0.10 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%) Frame = -3 Query: 322 YTTKKESPL-GVPTQSAHPARFSPDDKYARQRYLLKK 215 YT K+ P+ G T+ AHP RFSP+D Y R K+ Sbjct: 14 YTLKEVCPVCGEKTKVAHPPRFSPEDPYGEYRRRWKR 50
>NOP10_METAC (Q8TT00) Ribosome biogenesis protein Nop10| Length = 51 Score = 33.9 bits (76), Expect = 0.10 Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 1/37 (2%) Frame = -3 Query: 322 YTTKKESPL-GVPTQSAHPARFSPDDKYARQRYLLKK 215 YT +++ P+ G T A PARFSP D Y + R L KK Sbjct: 14 YTLREKCPVCGGVTLPAIPARFSPQDPYGKYRRLAKK 50
>NOP10_METKA (Q8TY85) Ribosome biogenesis protein Nop10| Length = 66 Score = 31.6 bits (70), Expect = 0.52 Identities = 13/21 (61%), Positives = 15/21 (71%) Frame = -3 Query: 274 HPARFSPDDKYARQRYLLKKR 212 HP RFSP+D Y + R LKKR Sbjct: 32 HPHRFSPEDPYGKYRRKLKKR 52
>PROA_PHOPR (Q6LTX2) Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41)| (Glutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase) (GSA dehydrogenase) Length = 418 Score = 30.4 bits (67), Expect = 1.2 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 1/65 (1%) Frame = +1 Query: 112 HSKQHSPK*TD-LLGGPIQCFSTFVLAAGLAAIQTSSSTGNADGRTCHPGRNELGGQTAS 288 H ++H+ +D +L IQ FV AAG AA+ ++ST DG G E+ T Sbjct: 333 HMRKHNASHSDAILTNDIQSAERFVNAAGSAAVYVNASTRFTDGAQFGLGA-EVAVSTQK 391 Query: 289 AHREG 303 H G Sbjct: 392 LHARG 396
>NOP10_METTH (O27362) Ribosome biogenesis protein Nop10| Length = 59 Score = 30.0 bits (66), Expect = 1.5 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%) Frame = -3 Query: 322 YTTKKESP-LGVPTQSAHPARFSPDDKYARQRYLLKK 215 YT K+ P G T +P +FSP+DKY R LK+ Sbjct: 12 YTLKEVCPHCGGRTGVIYPPKFSPEDKYGAYRRKLKR 48
>NOP10_ARCFU (O29724) Ribosome biogenesis protein Nop10| Length = 59 Score = 29.6 bits (65), Expect = 2.0 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%) Frame = -3 Query: 322 YTTKKESPL-GVPTQSAHPARFSPDDKYARQRYLLKKRFG 206 YT K+ P+ G T P RFS +D Y + R L+K G Sbjct: 14 YTLKERCPVCGERTHMPIPPRFSIEDPYGKYRRKLRKEIG 53
>RNF26_HUMAN (Q9BY78) RING finger protein 26| Length = 433 Score = 29.6 bits (65), Expect = 2.0 Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 2/44 (4%) Frame = -3 Query: 148 RDLFTLVNAVW-SVD*PCEERT-ITATYLAHYCSTSECNAMILW 23 ++LF+LV A+W +V P T + A +LAH S++ A++LW Sbjct: 160 QNLFSLVLALWDAVTGPLWRMTDVVAAFLAHISSSAVAMAILLW 203
>NOP10_HALMA (Q5UX23) Ribosome biogenesis protein Nop10| Length = 60 Score = 28.1 bits (61), Expect = 5.8 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%) Frame = -3 Query: 322 YTTKKESP-LGVPTQSAHPARFSPDDKYARQRYLLKKR 212 YT P G ++ PA FSP+D Y R LK+R Sbjct: 20 YTLDDTCPECGAEAVNSAPAPFSPEDSYGEYRRSLKRR 57
>NOP10_METMP (Q6LWK3) Ribosome biogenesis protein Nop10| Length = 51 Score = 27.7 bits (60), Expect = 7.5 Identities = 12/19 (63%), Positives = 13/19 (68%) Frame = -3 Query: 271 PARFSPDDKYARQRYLLKK 215 P RFSP DKY + R LKK Sbjct: 30 PPRFSPVDKYGKYRRALKK 48
>T2R34_MOUSE (Q7TQB0) Putative taste receptor type 2 member 34 (T2R34)| Length = 298 Score = 27.7 bits (60), Expect = 7.5 Identities = 10/28 (35%), Positives = 16/28 (57%) Frame = -3 Query: 100 CEERTITATYLAHYCSTSECNAMILWIV 17 CE TI +A Y C+AM++W++ Sbjct: 156 CENYTIYYKMMAFYLYYFRCHAMLMWVI 183 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,813,872 Number of Sequences: 219361 Number of extensions: 932515 Number of successful extensions: 2313 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 2280 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2312 length of database: 80,573,946 effective HSP length: 83 effective length of database: 62,366,983 effective search space used: 1496807592 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)