ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd15g15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NOLA3_ARATH (Q93XX8) H/ACA ribonucleoprotein complex subunit 3-l... 85 4e-17
2NOP10_SCHPO (Q9P7M5) H/ACA ribonucleoprotein complex subunit 3 (... 72 3e-13
3NOLA3_BRARE (Q6DRH5) H/ACA ribonucleoprotein complex subunit 3 (... 72 5e-13
4NOLA3_DROME (Q9V5P6) H/ACA ribonucleoprotein complex subunit 3 (... 69 3e-12
5NOP10_DEBHA (Q6BQP3) H/ACA ribonucleoprotein complex subunit 3 (... 67 1e-11
6NOLA3_MOUSE (Q9CQS2) H/ACA ribonucleoprotein complex subunit 3 (... 66 2e-11
7NOLA3_HUMAN (Q9NPE3) H/ACA ribonucleoprotein complex subunit 3 (... 66 2e-11
8NOP10_YEAST (Q6Q547) H/ACA ribonucleoprotein complex subunit 3 (... 65 4e-11
9NOP10_ASHGO (Q74Z52) H/ACA ribonucleoprotein complex subunit 3 (... 62 4e-10
10NOLA3_CAEEL (Q9XVR8) Putative H/ACA ribonucleoprotein complex su... 62 4e-10
11NOP10_CANGA (Q6FNL3) H/ACA ribonucleoprotein complex subunit 3 (... 61 6e-10
12NOLA3_TRYCR (Q6JZK2) H/ACA ribonucleoprotein complex subunit 3-l... 60 2e-09
13NOP10_KLULA (Q6CSZ0) H/ACA ribonucleoprotein complex subunit 3 (... 59 4e-09
14NOP10_SULTO (Q973G1) Ribosome biogenesis protein Nop10 39 0.002
15NOP10_PYRAE (Q8ZTY6) Ribosome biogenesis protein Nop10 37 0.016
16NOP10_PYRAB (Q9V0E3) Ribosome biogenesis protein Nop10 37 0.016
17NOP10_PYRKO (Q5JE48) Ribosome biogenesis protein Nop10 36 0.021
18NOP10_SULSO (Q97Z78) Ribosome biogenesis protein Nop10 35 0.062
19NOP10_PYRFU (Q8U1R4) Ribosome biogenesis protein Nop10 34 0.10
20NOP10_METAC (Q8TT00) Ribosome biogenesis protein Nop10 34 0.10
21NOP10_METKA (Q8TY85) Ribosome biogenesis protein Nop10 32 0.52
22PROA_PHOPR (Q6LTX2) Gamma-glutamyl phosphate reductase (GPR) (EC... 30 1.2
23NOP10_METTH (O27362) Ribosome biogenesis protein Nop10 30 1.5
24NOP10_ARCFU (O29724) Ribosome biogenesis protein Nop10 30 2.0
25RNF26_HUMAN (Q9BY78) RING finger protein 26 30 2.0
26NOP10_HALMA (Q5UX23) Ribosome biogenesis protein Nop10 28 5.8
27NOP10_METMP (Q6LWK3) Ribosome biogenesis protein Nop10 28 7.5
28T2R34_MOUSE (Q7TQB0) Putative taste receptor type 2 member 34 (T... 28 7.5

>NOLA3_ARATH (Q93XX8) H/ACA ribonucleoprotein complex subunit 3-like protein|
          Length = 64

 Score = 85.1 bits (209), Expect = 4e-17
 Identities = 39/50 (78%), Positives = 44/50 (88%)
 Frame = -3

Query: 322 YTTKKESPLGVPTQSAHPARFSPDDKYARQRYLLKKRFGLLPTQQPAQKY 173
           YTTKKESPLG+ T+SAHPARFSPDDKY++QR LLKKRFGLLPTQ    +Y
Sbjct: 15  YTTKKESPLGLATESAHPARFSPDDKYSKQRVLLKKRFGLLPTQNAPLQY 64



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>NOP10_SCHPO (Q9P7M5) H/ACA ribonucleoprotein complex subunit 3 (Nucleolar|
           protein family A member 3) (snoRNP protein nop10)
          Length = 64

 Score = 72.4 bits (176), Expect = 3e-13
 Identities = 35/50 (70%), Positives = 40/50 (80%)
 Frame = -3

Query: 322 YTTKKESPLGVPTQSAHPARFSPDDKYARQRYLLKKRFGLLPTQQPAQKY 173
           YT KK SP G  T+S+HPARFSPDDKY+RQRY LKKRF +L TQ PA+ Y
Sbjct: 15  YTLKKVSPDGRVTKSSHPARFSPDDKYSRQRYTLKKRFHVLLTQLPAKPY 64



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>NOLA3_BRARE (Q6DRH5) H/ACA ribonucleoprotein complex subunit 3 (Nucleolar|
           protein family A member 3)
          Length = 64

 Score = 71.6 bits (174), Expect = 5e-13
 Identities = 33/46 (71%), Positives = 36/46 (78%)
 Frame = -3

Query: 322 YTTKKESPLGVPTQSAHPARFSPDDKYARQRYLLKKRFGLLPTQQP 185
           YT KK  P G PT SAHPARFSPDDK++R R  +KKRFGLL TQQP
Sbjct: 15  YTLKKVDPSGQPTSSAHPARFSPDDKFSRHRVTIKKRFGLLLTQQP 60



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>NOLA3_DROME (Q9V5P6) H/ACA ribonucleoprotein complex subunit 3 (Nucleolar|
           protein family A member 3) (snoRNP protein dNop10)
          Length = 64

 Score = 68.9 bits (167), Expect = 3e-12
 Identities = 33/50 (66%), Positives = 38/50 (76%)
 Frame = -3

Query: 322 YTTKKESPLGVPTQSAHPARFSPDDKYARQRYLLKKRFGLLPTQQPAQKY 173
           YT KK +  G PT SAHPARFSP+DKY+RQR  +KKRFGLL TQ+P   Y
Sbjct: 15  YTLKKRTEDGRPTLSAHPARFSPEDKYSRQRLTIKKRFGLLLTQKPEPIY 64



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>NOP10_DEBHA (Q6BQP3) H/ACA ribonucleoprotein complex subunit 3 (Nucleolar|
           protein family A member 3) (snoRNP protein NOP10)
          Length = 58

 Score = 66.6 bits (161), Expect = 1e-11
 Identities = 32/44 (72%), Positives = 35/44 (79%)
 Frame = -3

Query: 322 YTTKKESPLGVPTQSAHPARFSPDDKYARQRYLLKKRFGLLPTQ 191
           YT  K +  G  T+SAHPARFSPDDKY+RQR  LKKRFGLLPTQ
Sbjct: 15  YTLNKTTSDGEITKSAHPARFSPDDKYSRQRVTLKKRFGLLPTQ 58



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>NOLA3_MOUSE (Q9CQS2) H/ACA ribonucleoprotein complex subunit 3 (Nucleolar|
           protein family A member 3) (snoRNP protein NOP10)
          Length = 64

 Score = 66.2 bits (160), Expect = 2e-11
 Identities = 31/46 (67%), Positives = 35/46 (76%)
 Frame = -3

Query: 322 YTTKKESPLGVPTQSAHPARFSPDDKYARQRYLLKKRFGLLPTQQP 185
           YT KK  P+G  T SAHPARFSPDDKY+R R  +KKRF +L TQQP
Sbjct: 15  YTLKKFDPMGQQTCSAHPARFSPDDKYSRHRITIKKRFKVLMTQQP 60



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>NOLA3_HUMAN (Q9NPE3) H/ACA ribonucleoprotein complex subunit 3 (Nucleolar|
           protein family A member 3) (snoRNP protein NOP10)
          Length = 64

 Score = 66.2 bits (160), Expect = 2e-11
 Identities = 31/46 (67%), Positives = 35/46 (76%)
 Frame = -3

Query: 322 YTTKKESPLGVPTQSAHPARFSPDDKYARQRYLLKKRFGLLPTQQP 185
           YT KK  P+G  T SAHPARFSPDDKY+R R  +KKRF +L TQQP
Sbjct: 15  YTLKKFDPMGQQTCSAHPARFSPDDKYSRHRITIKKRFKVLMTQQP 60



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>NOP10_YEAST (Q6Q547) H/ACA ribonucleoprotein complex subunit 3 (Nucleolar|
           protein family A member 3) (snoRNP protein NOP10)
          Length = 58

 Score = 65.1 bits (157), Expect = 4e-11
 Identities = 31/44 (70%), Positives = 35/44 (79%)
 Frame = -3

Query: 322 YTTKKESPLGVPTQSAHPARFSPDDKYARQRYLLKKRFGLLPTQ 191
           YT KK +  G  T+SAHPARFSPDDKY+RQR  LKKRFGL+P Q
Sbjct: 15  YTLKKVTESGEITKSAHPARFSPDDKYSRQRVTLKKRFGLVPGQ 58



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>NOP10_ASHGO (Q74Z52) H/ACA ribonucleoprotein complex subunit 3 (Nucleolar|
           protein family A member 3) (snoRNP protein NOP10)
          Length = 57

 Score = 62.0 bits (149), Expect = 4e-10
 Identities = 28/42 (66%), Positives = 34/42 (80%)
 Frame = -3

Query: 322 YTTKKESPLGVPTQSAHPARFSPDDKYARQRYLLKKRFGLLP 197
           YT +K +P G  T+SAHPARFSPDDKY+RQR  LK+RF +LP
Sbjct: 15  YTLEKVTPSGEITKSAHPARFSPDDKYSRQRVTLKRRFDMLP 56



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>NOLA3_CAEEL (Q9XVR8) Putative H/ACA ribonucleoprotein complex subunit 3-like|
           protein
          Length = 64

 Score = 62.0 bits (149), Expect = 4e-10
 Identities = 27/45 (60%), Positives = 36/45 (80%)
 Frame = -3

Query: 322 YTTKKESPLGVPTQSAHPARFSPDDKYARQRYLLKKRFGLLPTQQ 188
           YT K+ +P G  T +AHPARFSP+DK ++ R ++KKRFGLLPTQ+
Sbjct: 15  YTLKRTAPSGEQTLTAHPARFSPEDKNSKYRIIIKKRFGLLPTQK 59



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>NOP10_CANGA (Q6FNL3) H/ACA ribonucleoprotein complex subunit 3 (Nucleolar|
           protein family A member 3) (snoRNP protein NOP10)
          Length = 57

 Score = 61.2 bits (147), Expect = 6e-10
 Identities = 29/42 (69%), Positives = 33/42 (78%)
 Frame = -3

Query: 322 YTTKKESPLGVPTQSAHPARFSPDDKYARQRYLLKKRFGLLP 197
           YT KK +  G  T+SAHPARFSPDDKY+RQR  LKKR+ LLP
Sbjct: 15  YTLKKMTEEGEITKSAHPARFSPDDKYSRQRVTLKKRYNLLP 56



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>NOLA3_TRYCR (Q6JZK2) H/ACA ribonucleoprotein complex subunit 3-like protein|
           (Ribosome biogenesis protein Nop10)
          Length = 63

 Score = 59.7 bits (143), Expect = 2e-09
 Identities = 27/45 (60%), Positives = 33/45 (73%)
 Frame = -3

Query: 322 YTTKKESPLGVPTQSAHPARFSPDDKYARQRYLLKKRFGLLPTQQ 188
           YT KK  P G PT SAHPARFSPDDKY+R R  +K+RF  L +++
Sbjct: 14  YTLKKMDPEGKPTLSAHPARFSPDDKYSRHRITIKRRFKALKSEK 58



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>NOP10_KLULA (Q6CSZ0) H/ACA ribonucleoprotein complex subunit 3 (Nucleolar|
           protein family A member 3) (snoRNP protein NOP10)
          Length = 57

 Score = 58.5 bits (140), Expect = 4e-09
 Identities = 28/42 (66%), Positives = 32/42 (76%)
 Frame = -3

Query: 322 YTTKKESPLGVPTQSAHPARFSPDDKYARQRYLLKKRFGLLP 197
           YT KK +     T+SAHPARFSPDDKY+RQR  LKKR+ LLP
Sbjct: 15  YTLKKMTEDNEITKSAHPARFSPDDKYSRQRVTLKKRYNLLP 56



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>NOP10_SULTO (Q973G1) Ribosome biogenesis protein Nop10|
          Length = 56

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 20/37 (54%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -3

Query: 322 YTTKKESPL-GVPTQSAHPARFSPDDKYARQRYLLKK 215
           YT K   P+ G PT   HPARFSP DKY + R  +KK
Sbjct: 14  YTLKDICPICGTPTIIPHPARFSPVDKYVKYRIEIKK 50



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>NOP10_PYRAE (Q8ZTY6) Ribosome biogenesis protein Nop10|
          Length = 72

 Score = 36.6 bits (83), Expect = 0.016
 Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = -3

Query: 322 YTTKKES--PLGVPTQSAHPARFSPDDKYARQRYLLKKRFGLLPTQQPAQKY*STEWVLL 149
           YT  K+     G   +  HP +FSP+DKY + R L K   G LP +        T+  LL
Sbjct: 14  YTLSKDKCPRCGGAVRVPHPPKFSPEDKYQKYRILQKLLMGKLPIRD------ETKERLL 67

Query: 148 RDL 140
           RDL
Sbjct: 68  RDL 70



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>NOP10_PYRAB (Q9V0E3) Ribosome biogenesis protein Nop10|
          Length = 60

 Score = 36.6 bits (83), Expect = 0.016
 Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -3

Query: 322 YTTKKESPL-GVPTQSAHPARFSPDDKYARQRYLLKK 215
           YT K+  P+ G  T+ AHP RFSP+D Y   R  LK+
Sbjct: 14  YTLKETCPVCGEKTKVAHPPRFSPEDPYGEYRRRLKR 50



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>NOP10_PYRKO (Q5JE48) Ribosome biogenesis protein Nop10|
          Length = 59

 Score = 36.2 bits (82), Expect = 0.021
 Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -3

Query: 322 YTTKKESPL-GVPTQSAHPARFSPDDKYARQRYLLKK 215
           YT K+  P+ G  T+ AHP RFSP+D Y   R  LK+
Sbjct: 14  YTLKEVCPVCGSETKVAHPPRFSPEDPYGEYRRRLKR 50



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>NOP10_SULSO (Q97Z78) Ribosome biogenesis protein Nop10|
          Length = 56

 Score = 34.7 bits (78), Expect = 0.062
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -3

Query: 322 YTTKKESPL-GVPTQSAHPARFSPDDKYARQRYLLKK 215
           YT K    + G  T   HP+RFSP+DKY + R  LKK
Sbjct: 14  YTFKDTCQICGSKTVIPHPSRFSPEDKYVKYRIELKK 50



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>NOP10_PYRFU (Q8U1R4) Ribosome biogenesis protein Nop10|
          Length = 60

 Score = 33.9 bits (76), Expect = 0.10
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -3

Query: 322 YTTKKESPL-GVPTQSAHPARFSPDDKYARQRYLLKK 215
           YT K+  P+ G  T+ AHP RFSP+D Y   R   K+
Sbjct: 14  YTLKEVCPVCGEKTKVAHPPRFSPEDPYGEYRRRWKR 50



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>NOP10_METAC (Q8TT00) Ribosome biogenesis protein Nop10|
          Length = 51

 Score = 33.9 bits (76), Expect = 0.10
 Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -3

Query: 322 YTTKKESPL-GVPTQSAHPARFSPDDKYARQRYLLKK 215
           YT +++ P+ G  T  A PARFSP D Y + R L KK
Sbjct: 14  YTLREKCPVCGGVTLPAIPARFSPQDPYGKYRRLAKK 50



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>NOP10_METKA (Q8TY85) Ribosome biogenesis protein Nop10|
          Length = 66

 Score = 31.6 bits (70), Expect = 0.52
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = -3

Query: 274 HPARFSPDDKYARQRYLLKKR 212
           HP RFSP+D Y + R  LKKR
Sbjct: 32  HPHRFSPEDPYGKYRRKLKKR 52



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>PROA_PHOPR (Q6LTX2) Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41)|
           (Glutamate-5-semialdehyde dehydrogenase)
           (Glutamyl-gamma-semialdehyde dehydrogenase) (GSA
           dehydrogenase)
          Length = 418

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +1

Query: 112 HSKQHSPK*TD-LLGGPIQCFSTFVLAAGLAAIQTSSSTGNADGRTCHPGRNELGGQTAS 288
           H ++H+   +D +L   IQ    FV AAG AA+  ++ST   DG     G  E+   T  
Sbjct: 333 HMRKHNASHSDAILTNDIQSAERFVNAAGSAAVYVNASTRFTDGAQFGLGA-EVAVSTQK 391

Query: 289 AHREG 303
            H  G
Sbjct: 392 LHARG 396



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>NOP10_METTH (O27362) Ribosome biogenesis protein Nop10|
          Length = 59

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -3

Query: 322 YTTKKESP-LGVPTQSAHPARFSPDDKYARQRYLLKK 215
           YT K+  P  G  T   +P +FSP+DKY   R  LK+
Sbjct: 12  YTLKEVCPHCGGRTGVIYPPKFSPEDKYGAYRRKLKR 48



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>NOP10_ARCFU (O29724) Ribosome biogenesis protein Nop10|
          Length = 59

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -3

Query: 322 YTTKKESPL-GVPTQSAHPARFSPDDKYARQRYLLKKRFG 206
           YT K+  P+ G  T    P RFS +D Y + R  L+K  G
Sbjct: 14  YTLKERCPVCGERTHMPIPPRFSIEDPYGKYRRKLRKEIG 53



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>RNF26_HUMAN (Q9BY78) RING finger protein 26|
          Length = 433

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
 Frame = -3

Query: 148 RDLFTLVNAVW-SVD*PCEERT-ITATYLAHYCSTSECNAMILW 23
           ++LF+LV A+W +V  P    T + A +LAH  S++   A++LW
Sbjct: 160 QNLFSLVLALWDAVTGPLWRMTDVVAAFLAHISSSAVAMAILLW 203



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>NOP10_HALMA (Q5UX23) Ribosome biogenesis protein Nop10|
          Length = 60

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -3

Query: 322 YTTKKESP-LGVPTQSAHPARFSPDDKYARQRYLLKKR 212
           YT     P  G    ++ PA FSP+D Y   R  LK+R
Sbjct: 20  YTLDDTCPECGAEAVNSAPAPFSPEDSYGEYRRSLKRR 57



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>NOP10_METMP (Q6LWK3) Ribosome biogenesis protein Nop10|
          Length = 51

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -3

Query: 271 PARFSPDDKYARQRYLLKK 215
           P RFSP DKY + R  LKK
Sbjct: 30  PPRFSPVDKYGKYRRALKK 48



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>T2R34_MOUSE (Q7TQB0) Putative taste receptor type 2 member 34 (T2R34)|
          Length = 298

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 100 CEERTITATYLAHYCSTSECNAMILWIV 17
           CE  TI    +A Y     C+AM++W++
Sbjct: 156 CENYTIYYKMMAFYLYYFRCHAMLMWVI 183


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,813,872
Number of Sequences: 219361
Number of extensions: 932515
Number of successful extensions: 2313
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 2280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2312
length of database: 80,573,946
effective HSP length: 83
effective length of database: 62,366,983
effective search space used: 1496807592
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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