ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd15g14 |
|---|---|
| Clone Library Name | barley_pub |
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor| Length = 324 Score = 95.5 bits (236), Expect = 1e-19 Identities = 42/90 (46%), Positives = 61/90 (67%) Frame = -3 Query: 578 DGTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKA 399 D +K+Y NL W + + L+ AF QPG + A+VI++R +GRSRGFGF++F + + + Sbjct: 214 DSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNS 273 Query: 398 ALQAMDGVELDGRPLRLSLAAQNPPAGSTP 309 AL M+ VEL+GRPLRL++A Q P S P Sbjct: 274 ALDTMNEVELEGRPLRLNVAGQKAPVSSPP 303 Score = 53.5 bits (127), Expect = 5e-07 Identities = 22/74 (29%), Positives = 45/74 (60%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 ++Y GNL + + + L F + ++++R T RSRGF FV+ ++++AK A++ Sbjct: 115 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRL 174 Query: 386 MDGVELDGRPLRLS 345 DG ++ GR ++++ Sbjct: 175 FDGSQVGGRTVKVN 188
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 91.3 bits (225), Expect = 2e-18 Identities = 40/85 (47%), Positives = 62/85 (72%) Frame = -3 Query: 578 DGTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKA 399 D + +VY GNL WGV AL+T F Q +V A+V+++RD+GRSRGFGFV++ + ++ Sbjct: 191 DSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNN 250 Query: 398 ALQAMDGVELDGRPLRLSLAAQNPP 324 A++++DGV+L+GR +R+S A PP Sbjct: 251 AIESLDGVDLNGRAIRVSPAEARPP 275 Score = 64.3 bits (155), Expect = 3e-10 Identities = 36/100 (36%), Positives = 56/100 (56%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 K++ GNL + + AL FE + VI+++ TGRSRGFGFV+ + ++ +AA Q Sbjct: 88 KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147 Query: 386 MDGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQEKTASRG 267 +G ELDGR LR++ + P S ++ + SRG Sbjct: 148 FNGYELDGRALRVN-SGPPPEKRENSSFRENSSFRGGSRG 186
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 91.3 bits (225), Expect = 2e-18 Identities = 40/85 (47%), Positives = 62/85 (72%) Frame = -3 Query: 578 DGTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKA 399 D + +VY GNL WGV AL+T F Q +V A+V+++RD+GRSRGFGFV++ + ++ Sbjct: 185 DSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNN 244 Query: 398 ALQAMDGVELDGRPLRLSLAAQNPP 324 A++++DGV+L+GR +R+S A PP Sbjct: 245 AIESLDGVDLNGRAIRVSPAEARPP 269 Score = 65.9 bits (159), Expect = 1e-10 Identities = 36/100 (36%), Positives = 56/100 (56%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 K++ GNL + + AL FE + VI+++ TGRSRGFGFV+ + ++ +AA Q Sbjct: 88 KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147 Query: 386 MDGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQEKTASRG 267 +G ELDGR LR++ +G P ++ + SRG Sbjct: 148 FNGYELDGRALRVN-------SGPPPEKRENSSFRGGSRG 180
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 88.6 bits (218), Expect = 1e-17 Identities = 40/81 (49%), Positives = 60/81 (74%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 +VY GNL WGV AL++ F Q +V ARVI++RD+GRS+GFGFV++ + Q+ + A+++ Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264 Query: 386 MDGVELDGRPLRLSLAAQNPP 324 +DG +LDGR +R+S A PP Sbjct: 265 LDGADLDGRQIRVSEAEARPP 285 Score = 70.9 bits (172), Expect = 3e-12 Identities = 45/119 (37%), Positives = 65/119 (54%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 K++ GNL + V + L FE + VI+++ TGRSRGFGFV+ ++ + +AA Q Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151 Query: 386 MDGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQEKTASRGSEAEPQVXNNTSTSGQFGG 210 +G ELDGRPLR++ A PP ++E SRG P+ +S SG GG Sbjct: 152 FNGYELDGRPLRVN-AGPPPP----------KREDGFSRG----PRSSFGSSGSGYGGG 195
>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)| Length = 291 Score = 88.6 bits (218), Expect = 1e-17 Identities = 39/84 (46%), Positives = 60/84 (71%) Frame = -3 Query: 578 DGTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKA 399 D + +VY GNL WGV ALK F Q +V A+V+++RD+GRSRGFGFV++ + ++ Sbjct: 204 DSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVND 263 Query: 398 ALQAMDGVELDGRPLRLSLAAQNP 327 A+ +++GV+LDGR +R+S A + P Sbjct: 264 AIDSLNGVDLDGRSIRVSAAEERP 287 Score = 63.9 bits (154), Expect = 4e-10 Identities = 43/125 (34%), Positives = 65/125 (52%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 K++ GNL + V + AL FE + VI+++ TGRSRGFGFV+ T ++ +AA Q Sbjct: 88 KLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQ 147 Query: 386 MDGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQEKTASRGSEAEPQVXNNTSTSGQFGGE 207 +G E+DGR +R++ A PA S + +S G + N+S G GG Sbjct: 148 FNGYEIDGRAIRVN--AGPAPAKRENSSFGGGRGGNSSYGGGRD----GNSSFGGARGGR 201 Query: 206 MEKSN 192 S+ Sbjct: 202 SVDSS 206
>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)| Length = 292 Score = 88.6 bits (218), Expect = 1e-17 Identities = 38/84 (45%), Positives = 60/84 (71%) Frame = -3 Query: 578 DGTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKA 399 D + +VY GNL WGV ALK F Q +V A+V+++RD+GRSRGFGFV++ + ++ Sbjct: 205 DSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVND 264 Query: 398 ALQAMDGVELDGRPLRLSLAAQNP 327 A+ +++G++LDGR +R+S A + P Sbjct: 265 AIDSLNGIDLDGRSIRVSAAEERP 288 Score = 62.0 bits (149), Expect = 1e-09 Identities = 42/125 (33%), Positives = 65/125 (52%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 K++ GNL + V + AL FE + VI+++ +GRSRGFGFV+ T ++ +AA Q Sbjct: 89 KLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQ 148 Query: 386 MDGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQEKTASRGSEAEPQVXNNTSTSGQFGGE 207 +G E+DGR +R++ A PA S + +S G + N+S G GG Sbjct: 149 FNGYEIDGRAIRVN--AGPAPAKRENSSFGGGRGGNSSYGGGRD----GNSSFGGARGGR 202 Query: 206 MEKSN 192 S+ Sbjct: 203 SVDSS 207
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein cp29) Length = 342 Score = 85.9 bits (211), Expect = 9e-17 Identities = 39/83 (46%), Positives = 58/83 (69%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 ++Y GNL WGV AL+ F Q +V ARVI++RD+GRS+GFGFV+ + Q+ + A+ + Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317 Query: 386 MDGVELDGRPLRLSLAAQNPPAG 318 ++G +LDGR +R+S A PP G Sbjct: 318 LNGADLDGRQIRVSEAEARPPRG 340 Score = 68.2 bits (165), Expect = 2e-11 Identities = 42/120 (35%), Positives = 61/120 (50%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 K++ GNL + V + L FE + VI+++ TGRSRGFGFV+ T + +AA Q Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159 Query: 386 MDGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQEKTASRGSEAEPQVXNNTSTSGQFGGE 207 +G E +GRPLR++ A PP P +S S G +E + G +G E Sbjct: 160 FNGYEFEGRPLRVN--AGPPP----PKREESFSRGPRSGGYGSERGGGYGSERGGGYGSE 213
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 79.3 bits (194), Expect = 9e-15 Identities = 35/82 (42%), Positives = 54/82 (65%) Frame = -3 Query: 569 YKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQ 390 ++VY GNL W V L+ F +V ARV+++R+TGRSRGFGFV+ + + A+ Sbjct: 244 FRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAIS 303 Query: 389 AMDGVELDGRPLRLSLAAQNPP 324 A+DG L+GR +R+++A + PP Sbjct: 304 ALDGQNLEGRAIRVNVAEERPP 325 Score = 62.4 bits (150), Expect = 1e-09 Identities = 34/89 (38%), Positives = 54/89 (60%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 K++ GNL + V + AL FE + A VI+ R+T +SRGFGFV+ ++ +A+ A++ Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210 Query: 386 MDGVELDGRPLRLSLAAQNPPAGSTPSXA 300 + +L+GR L ++ AA P GS P A Sbjct: 211 FNRYDLNGRLLTVNKAA---PRGSRPERA 236
>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)| Length = 414 Score = 75.9 bits (185), Expect = 1e-13 Identities = 38/94 (40%), Positives = 52/94 (55%), Gaps = 8/94 (8%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 ++ G L W + LK FE G++GARVI+ER T RSRG+G+V F A+ A+Q M Sbjct: 170 IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEM 229 Query: 383 DGVELDGRPLRLSLAAQNPPA--------GSTPS 306 G E+DGRP+ ++ P G TPS Sbjct: 230 QGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPS 263 Score = 54.7 bits (130), Expect = 2e-07 Identities = 26/79 (32%), Positives = 43/79 (54%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 ++ GNL + A+ F +V R+ +T + +GFG+V F ++DAK AL A+ Sbjct: 269 LFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDAL 328 Query: 383 DGVELDGRPLRLSLAAQNP 327 G +D RP+RL ++ P Sbjct: 329 QGEYIDNRPVRLDFSSPRP 347
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 75.5 bits (184), Expect = 1e-13 Identities = 33/82 (40%), Positives = 52/82 (63%) Frame = -3 Query: 572 TYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAAL 393 TY++Y GN+ W + L+ F +V ARV+F+R++GRSRGFGFV+ + + A+ Sbjct: 190 TYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAI 249 Query: 392 QAMDGVELDGRPLRLSLAAQNP 327 +DG LDGR +R++ A + P Sbjct: 250 ANLDGQTLDGRTIRVNAAEERP 271 Score = 60.1 bits (144), Expect = 5e-09 Identities = 36/90 (40%), Positives = 55/90 (61%), Gaps = 1/90 (1%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVG-ARVIFERDTGRSRGFGFVSFHTIQDAKAALQ 390 K++ GNL + + + L F+ Q G+V A VI+ R+T RSRGFGFV+ T+++A A++ Sbjct: 98 KLFVGNLPYDIDSEGLAQLFQ-QAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVE 156 Query: 389 AMDGVELDGRPLRLSLAAQNPPAGSTPSXA 300 +L+GR L ++ AA P GS P A Sbjct: 157 LYSQYDLNGRLLTVNKAA---PRGSRPERA 183
>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial| precursor (AtGRP2) Length = 158 Score = 74.3 bits (181), Expect = 3e-13 Identities = 38/82 (46%), Positives = 53/82 (64%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 K++ G L WG +L+ AF +V A+VI +R+TGRSRGFGFV+F+ A AA+ Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95 Query: 386 MDGVELDGRPLRLSLAAQNPPA 321 MDG EL+GR +R++ A P A Sbjct: 96 MDGKELNGRHIRVNPANDRPSA 117
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 74.3 bits (181), Expect = 3e-13 Identities = 35/80 (43%), Positives = 51/80 (63%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 +VY GNL W V L+ F +V ARV+ +R+TGRSRGFGFV+ + + A+ A Sbjct: 150 RVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAA 209 Query: 386 MDGVELDGRPLRLSLAAQNP 327 +DG LDGR +R+++A + P Sbjct: 210 LDGQTLDGRAVRVNVAEERP 229 Score = 63.5 bits (153), Expect = 5e-10 Identities = 33/84 (39%), Positives = 54/84 (64%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 K++ GNL + V + L F+ + A VI+ R+T RSRGFGFV+ T+++A+ A++ Sbjct: 56 KLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEL 115 Query: 386 MDGVELDGRPLRLSLAAQNPPAGS 315 ++G ++DGR L ++ AA P GS Sbjct: 116 LNGYDMDGRQLTVNKAA---PRGS 136
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 73.9 bits (180), Expect = 4e-13 Identities = 32/78 (41%), Positives = 52/78 (66%) Frame = -3 Query: 572 TYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAAL 393 +Y++Y GN+ WG+ L+ F +V ARV+++R+TGRSRGFGFV+ + + A+ Sbjct: 229 SYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAI 288 Query: 392 QAMDGVELDGRPLRLSLA 339 +DG LDGR +R+++A Sbjct: 289 ANLDGQSLDGRTIRVNVA 306 Score = 57.8 bits (138), Expect = 3e-08 Identities = 32/79 (40%), Positives = 53/79 (67%), Gaps = 1/79 (1%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVG-ARVIFERDTGRSRGFGFVSFHTIQDAKAALQ 390 K++ GNL + V + L FE Q G+V A VI+ RDT +SRGFGFV+ T+++A+ A++ Sbjct: 137 KLFVGNLPYDVDSEGLARLFE-QAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVE 195 Query: 389 AMDGVELDGRPLRLSLAAQ 333 + +++GR L ++ AA+ Sbjct: 196 MYNRYDVNGRLLTVNKAAR 214
>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein| PUB1 (ARS consensus-binding protein ACBP-60) (Poly(U)-binding protein) (Poly uridylate-binding protein) Length = 452 Score = 70.1 bits (170), Expect = 5e-12 Identities = 33/82 (40%), Positives = 53/82 (64%) Frame = -3 Query: 578 DGTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKA 399 D T+ ++ G+L V L+ AF+ P + V+++ TG SRG+GFVSF + DA+ Sbjct: 158 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQN 217 Query: 398 ALQAMDGVELDGRPLRLSLAAQ 333 A+ +M G +L+GRPLR++ AA+ Sbjct: 218 AMDSMQGQDLNGRPLRINWAAK 239
>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7| Length = 176 Score = 68.9 bits (167), Expect = 1e-11 Identities = 33/87 (37%), Positives = 52/87 (59%) Frame = -3 Query: 578 DGTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKA 399 D Y+ + G L W AL+TAF ++ +++I +R+TGRSRGFGFV+F + K Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64 Query: 398 ALQAMDGVELDGRPLRLSLAAQNPPAG 318 A++ M+G +LDGR + ++ A G Sbjct: 65 AIEGMNGQDLDGRSITVNEAQSRGSGG 91
>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A| Length = 166 Score = 68.9 bits (167), Expect = 1e-11 Identities = 33/87 (37%), Positives = 52/87 (59%) Frame = -3 Query: 578 DGTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKA 399 D Y+ + G L W AL+TAF ++ +++I +R+TGRSRGFGFV+F + K Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKD 64 Query: 398 ALQAMDGVELDGRPLRLSLAAQNPPAG 318 A++ M+G +LDGR + ++ A G Sbjct: 65 AIEGMNGQDLDGRSITVNEAQSRGSGG 91
>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A| Length = 169 Score = 68.9 bits (167), Expect = 1e-11 Identities = 33/80 (41%), Positives = 51/80 (63%) Frame = -3 Query: 578 DGTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKA 399 D Y+ + G L W +L+TAF LV +++I +R+TGRSRGFGFV+F + K Sbjct: 5 DVEYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKD 64 Query: 398 ALQAMDGVELDGRPLRLSLA 339 A++ M+G +LDGR + ++ A Sbjct: 65 AIEGMNGQDLDGRSITVNEA 84
>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2| Length = 168 Score = 66.6 bits (161), Expect = 6e-11 Identities = 33/87 (37%), Positives = 50/87 (57%) Frame = -3 Query: 578 DGTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKA 399 D Y+ + G L W L+ AF ++ ++VI +R+TGRSRGFGFV+F + Q Sbjct: 5 DVEYRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLD 64 Query: 398 ALQAMDGVELDGRPLRLSLAAQNPPAG 318 A++ M+G ELDGR + ++ A G Sbjct: 65 AIENMNGKELDGRNITVNQAQSRGGGG 91
>GAR2_SCHPO (P41891) Protein gar2| Length = 500 Score = 65.9 bits (159), Expect = 1e-10 Identities = 40/93 (43%), Positives = 52/93 (55%), Gaps = 1/93 (1%) Frame = -3 Query: 572 TYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAAL 393 T V+ G L W V L FE +VGARVI + +GRS+G+G+V F T + AKAA+ Sbjct: 262 TCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAV 321 Query: 392 QAMDGVELDGRPLRLSLAAQNP-PAGSTPSXAQ 297 A E+DGR + L L+ NP PA P Q Sbjct: 322 AANGTKEIDGRMVNLDLS--NPRPANPQPYAQQ 352 Score = 50.8 bits (120), Expect = 3e-06 Identities = 29/83 (34%), Positives = 43/83 (51%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 V+ GNL + L TAF G + R+ + +GR +GFG+V+F I AK ++ M Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVE-M 426 Query: 383 DGVELDGRPLRLSLAAQNPPAGS 315 +G + GRP RL + GS Sbjct: 427 NGHFIAGRPCRLDFSTPRTGGGS 449
>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein| Length = 157 Score = 65.5 bits (158), Expect = 1e-10 Identities = 32/87 (36%), Positives = 50/87 (57%) Frame = -3 Query: 578 DGTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKA 399 D Y+ + G L W +L+ AF ++ ++VI +R+TGRSRGFGFV+F + Sbjct: 5 DVEYRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLD 64 Query: 398 ALQAMDGVELDGRPLRLSLAAQNPPAG 318 A++ M+G ELDGR + ++ A G Sbjct: 65 AIENMNGKELDGRNITVNQAQSRGGGG 91
>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein| Length = 157 Score = 64.7 bits (156), Expect = 2e-10 Identities = 30/84 (35%), Positives = 49/84 (58%) Frame = -3 Query: 569 YKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQ 390 Y+ + G L W +L+ AF + +++I +R+TGRSRGFGFV+F + + A++ Sbjct: 6 YRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIE 65 Query: 389 AMDGVELDGRPLRLSLAAQNPPAG 318 M+G ELDGR + ++ A G Sbjct: 66 GMNGQELDGRNITVNEAQSRGSGG 89
>NUCL_XENLA (P20397) Nucleolin (Protein C23)| Length = 650 Score = 63.5 bits (153), Expect = 5e-10 Identities = 32/61 (52%), Positives = 42/61 (68%) Frame = -3 Query: 521 LKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 342 LK AF+G V AR++ +RDTG S+GFGFV F T +DAKAA +AM+ E+DG + L Sbjct: 518 LKEAFDGS---VNARIVTDRDTGASKGFGFVDFSTAEDAKAAKEAMEDGEIDGNKVTLDF 574 Query: 341 A 339 A Sbjct: 575 A 575 Score = 47.0 bits (110), Expect = 5e-05 Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 2/98 (2%) Frame = -3 Query: 578 DGTYKVYA-GNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 402 +G KV NL + +L+ FE + ++ GR++GF F+ F + +DAK Sbjct: 410 EGDSKVLVVNNLSYSATEDSLREVFEK-----ATSIRIPQNQGRAKGFAFIEFSSAEDAK 464 Query: 401 AALQAMDGVELDGRPLRLSLA-AQNPPAGSTPSXAQSQ 291 A+ + + E++GR +RL + P G AQS+ Sbjct: 465 DAMDSCNNTEIEGRSIRLEFSQGGGPQGGGRGGSAQSK 502
>RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial precursor| Length = 212 Score = 63.2 bits (152), Expect = 6e-10 Identities = 39/111 (35%), Positives = 60/111 (54%), Gaps = 4/111 (3%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 K+Y G L G +LK AF G+ ARV+ + TGRSRG+GFV+F + A +A+ A Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91 Query: 386 MDGVELDGRPLRLSLAAQNP----PAGSTPSXAQSQQEKTASRGSEAEPQV 246 M+G EL+G + +++A P + A+ ++ K SR +P V Sbjct: 92 MNGQELNGFNISVNVAKDWPSLPLSLDESIEEAEKKENKMMSRSVWKDPFV 142
>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 62.8 bits (151), Expect = 8e-10 Identities = 33/84 (39%), Positives = 50/84 (59%) Frame = -3 Query: 581 DDGTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 402 D+G K++ G L + AL+ F + V+ +R+T RSRGFGFV+F I DAK Sbjct: 4 DEG--KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61 Query: 401 AALQAMDGVELDGRPLRLSLAAQN 330 A+ AM+G +DGR +R+ A ++ Sbjct: 62 DAMMAMNGKSVDGRQIRVDQAGKS 85
>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 62.8 bits (151), Expect = 8e-10 Identities = 33/84 (39%), Positives = 50/84 (59%) Frame = -3 Query: 581 DDGTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 402 D+G K++ G L + AL+ F + V+ +R+T RSRGFGFV+F I DAK Sbjct: 4 DEG--KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61 Query: 401 AALQAMDGVELDGRPLRLSLAAQN 330 A+ AM+G +DGR +R+ A ++ Sbjct: 62 DAMMAMNGKSVDGRQIRVDQAGKS 85
>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 62.8 bits (151), Expect = 8e-10 Identities = 33/84 (39%), Positives = 50/84 (59%) Frame = -3 Query: 581 DDGTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 402 D+G K++ G L + AL+ F + V+ +R+T RSRGFGFV+F I DAK Sbjct: 4 DEG--KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61 Query: 401 AALQAMDGVELDGRPLRLSLAAQN 330 A+ AM+G +DGR +R+ A ++ Sbjct: 62 DAMMAMNGKSVDGRQIRVDQAGKS 85
>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10| Length = 169 Score = 62.4 bits (150), Expect = 1e-09 Identities = 30/84 (35%), Positives = 47/84 (55%) Frame = -3 Query: 569 YKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQ 390 Y+ + G L W L+ F ++ +++I +R+TGRSRGFGFV+F + K A+ Sbjct: 6 YRCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAID 65 Query: 389 AMDGVELDGRPLRLSLAAQNPPAG 318 M+G ELDGR + ++ A G Sbjct: 66 EMNGKELDGRTITVNEAQSRGGGG 89
>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)| Length = 386 Score = 62.0 bits (149), Expect = 1e-09 Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Frame = -3 Query: 569 YKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQ 390 + V+ G+L + +K AF + ARV+ + TG+S+G+GFVSF DA+ A+Q Sbjct: 106 FHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQ 165 Query: 389 AMDGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQ---EKTASRGSEAEPQVXNNTSTSG 222 M G L GR +R + A + PPA + + ++Q ++ S+ S V TSG Sbjct: 166 QMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSG 224 Score = 35.4 bits (80), Expect = 0.14 Identities = 30/103 (29%), Positives = 50/103 (48%) Frame = -3 Query: 581 DDGTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 402 D+ +Y GNL V + F ++I DT + + FV FH + A Sbjct: 3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIM--DTAGNDPYCFVEFHEHRHAA 60 Query: 401 AALQAMDGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQEKTAS 273 AAL AM+G ++ G+ ++++ A +TPS SQ++ T+S Sbjct: 61 AALAAMNGRKIMGKEVKVNWA-------TTPS---SQKKDTSS 93
>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)| (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15 (p15-TIA-1)] Length = 386 Score = 62.0 bits (149), Expect = 1e-09 Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Frame = -3 Query: 569 YKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQ 390 + V+ G+L + +K AF + ARV+ + TG+S+G+GFVSF DA+ A+Q Sbjct: 106 FHVFVGDLSPQITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQ 165 Query: 389 AMDGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQ---EKTASRGSEAEPQVXNNTSTSG 222 M G L GR +R + A + PPA + + ++Q ++ ++ S + V TSG Sbjct: 166 QMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSG 224 Score = 35.4 bits (80), Expect = 0.14 Identities = 30/103 (29%), Positives = 50/103 (48%) Frame = -3 Query: 581 DDGTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 402 D+ +Y GNL V + F ++I DT + + FV FH + A Sbjct: 3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIM--DTAGNDPYCFVEFHEHRHAA 60 Query: 401 AALQAMDGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQEKTAS 273 AAL AM+G ++ G+ ++++ A +TPS SQ++ T+S Sbjct: 61 AALAAMNGRKIMGKEVKVNWA-------TTPS---SQKKDTSS 93
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 61.6 bits (148), Expect = 2e-09 Identities = 29/96 (30%), Positives = 54/96 (56%) Frame = -3 Query: 575 GTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 396 G ++Y G+L + + L+ FE + +++ + +TGRS+G+GF++F + AK A Sbjct: 248 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKA 307 Query: 395 LQAMDGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQ 288 L+ ++G EL GRP+++ + A S S S + Sbjct: 308 LEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDE 343
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 61.6 bits (148), Expect = 2e-09 Identities = 29/96 (30%), Positives = 54/96 (56%) Frame = -3 Query: 575 GTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 396 G ++Y G+L + + L+ FE + +++ + +TGRS+G+GF++F + AK A Sbjct: 248 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKA 307 Query: 395 LQAMDGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQ 288 L+ ++G EL GRP+++ + A S S S + Sbjct: 308 LEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDE 343
>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) Length = 172 Score = 61.6 bits (148), Expect = 2e-09 Identities = 32/84 (38%), Positives = 50/84 (59%) Frame = -3 Query: 581 DDGTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 402 D+G K++ G L + +L+ F + V+ +R+T RSRGFGFV+F I DAK Sbjct: 4 DEG--KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61 Query: 401 AALQAMDGVELDGRPLRLSLAAQN 330 A+ AM+G +DGR +R+ A ++ Sbjct: 62 DAMMAMNGKSVDGRQIRVDQAGKS 85
>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 61.6 bits (148), Expect = 2e-09 Identities = 32/84 (38%), Positives = 50/84 (59%) Frame = -3 Query: 581 DDGTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 402 D+G K++ G L + +L+ F + V+ +R+T RSRGFGFV+F I DAK Sbjct: 4 DEG--KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61 Query: 401 AALQAMDGVELDGRPLRLSLAAQN 330 A+ AM+G +DGR +R+ A ++ Sbjct: 62 DAMMAMNGKSVDGRQIRVDQAGKS 85
>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (xCIRP) Length = 163 Score = 61.2 bits (147), Expect = 2e-09 Identities = 32/84 (38%), Positives = 50/84 (59%) Frame = -3 Query: 581 DDGTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 402 D+G K++ G L + L+ AF + V+ +R+T RSRGFGFV+F + DAK Sbjct: 3 DEG--KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAK 60 Query: 401 AALQAMDGVELDGRPLRLSLAAQN 330 A+ AM+G +DGR +R+ A ++ Sbjct: 61 DAMMAMNGKSVDGRQIRVDQAGKS 84
>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)| Length = 392 Score = 60.8 bits (146), Expect = 3e-09 Identities = 33/107 (30%), Positives = 59/107 (55%) Frame = -3 Query: 569 YKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQ 390 + V+ G+L + +K+AF + ARV+ + TG+S+G+GFVSF+ DA+ A+ Sbjct: 114 FHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIV 173 Query: 389 AMDGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQEKTASRGSEAEPQ 249 M G L GR +R + A + PPA + ++Q + +++ P+ Sbjct: 174 HMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPK 220 Score = 31.2 bits (69), Expect = 2.7 Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 16/119 (13%) Frame = -3 Query: 581 DDGTYK-VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGR----SRGFG------ 435 DDG + +Y GNL V + F ++I E+ R S GF Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTS 63 Query: 434 -----FVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQEKTAS 273 FV F+ +DA AAL AM+G ++ G+ ++++ A +TPS SQ++ T++ Sbjct: 64 NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA-------TTPS---SQKKDTSN 112
>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)| Length = 375 Score = 60.1 bits (144), Expect = 5e-09 Identities = 33/107 (30%), Positives = 59/107 (55%) Frame = -3 Query: 569 YKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQ 390 + V+ G+L + +K+AF + ARV+ + TG+S+G+GFVSF+ DA+ A+ Sbjct: 97 FHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIV 156 Query: 389 AMDGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQEKTASRGSEAEPQ 249 M G L GR +R + A + PPA + ++Q + +++ P+ Sbjct: 157 HMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPK 203 Score = 32.7 bits (73), Expect = 0.93 Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 1/104 (0%) Frame = -3 Query: 581 DDGTYK-VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDA 405 DDG + +Y GNL V + F ++I E + + FV F+ +DA Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRDA 61 Query: 404 KAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQEKTAS 273 AAL AM+G ++ G+ ++++ A +TPS SQ++ T++ Sbjct: 62 AAALAAMNGRKILGKEVKVNWA-------TTPS---SQKKDTSN 95
>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)| Length = 169 Score = 60.1 bits (144), Expect = 5e-09 Identities = 28/84 (33%), Positives = 48/84 (57%) Frame = -3 Query: 569 YKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQ 390 Y+ + G L W L+ F ++ +++I +R++GRSRGFGFV+F + + A++ Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65 Query: 389 AMDGVELDGRPLRLSLAAQNPPAG 318 M+G ELDGR + ++ A G Sbjct: 66 EMNGKELDGRVITVNEAQSRGSGG 89
>NUCL_CHICK (P15771) Nucleolin (Protein C23)| Length = 694 Score = 59.7 bits (143), Expect = 7e-09 Identities = 29/61 (47%), Positives = 42/61 (68%) Frame = -3 Query: 521 LKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 342 L+ +FEG + AR++ +RDTG S+GFGFV F + +DAKAA +AM+ E+DG + L Sbjct: 569 LRESFEGS---ISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDF 625 Query: 341 A 339 A Sbjct: 626 A 626 Score = 44.3 bits (103), Expect = 3e-04 Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 1/64 (1%) Frame = -3 Query: 467 ERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSXAQ-SQ 291 + + GR +G+ FV F T +DAK AL + + E++GR +RL ++ + G+ + +Q Sbjct: 491 QNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQKGNMNARGGFNQ 550 Query: 290 QEKT 279 Q KT Sbjct: 551 QSKT 554 Score = 41.2 bits (95), Expect = 0.003 Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 1/112 (0%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 ++ NL + V +K FE + R++ ++ G S+G ++ F T +A+ AL+ Sbjct: 373 LFVKNLPYRVTEDEMKNVFENA---LEVRLVLNKE-GSSKGMAYIEFKTEAEAEKALEEK 428 Query: 383 DGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQEKTASRGS-EAEPQVXNNTS 231 G E+DGR + + + +SQQE G E++ + NN S Sbjct: 429 QGTEVDGRAMVIDYTGE-----------KSQQESQKGGGERESKTLIVNNLS 469
>NUCL_MESAU (P08199) Nucleolin (Protein C23)| Length = 713 Score = 59.3 bits (142), Expect = 9e-09 Identities = 31/68 (45%), Positives = 44/68 (64%) Frame = -3 Query: 521 LKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 342 LK +FEG V AR++ +R+TG S+GFGFV F++ +DAKAA +AM+ E+DG + L Sbjct: 587 LKESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 643 Query: 341 AAQNPPAG 318 A G Sbjct: 644 AKPKGEGG 651 Score = 45.4 bits (106), Expect = 1e-04 Identities = 29/91 (31%), Positives = 47/91 (51%) Frame = -3 Query: 551 NLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVE 372 NL + L+ FE + + + G+S+G+ F+ F + +DAK AL + + +E Sbjct: 491 NLSYSATEETLQEVFEKATFIK----VPQNQQGKSKGYAFIEFASFEDAKEALNSCNKME 546 Query: 371 LDGRPLRLSLAAQNPPAGSTPSXAQSQQEKT 279 ++GR +RL L P GS A+SQ KT Sbjct: 547 IEGRTIRLELQG---PRGS--PNARSQPSKT 572 Score = 38.1 bits (87), Expect = 0.022 Identities = 27/111 (24%), Positives = 46/111 (41%) Frame = -3 Query: 557 AGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDG 378 A NL + + LK FE + G+S+G ++ F + DA+ L+ G Sbjct: 397 AKNLSFNITEDELKEVFED-----ALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQG 451 Query: 377 VELDGRPLRLSLAAQNPPAGSTPSXAQSQQEKTASRGSEAEPQVXNNTSTS 225 E+DGR + L + Q + K ++ E++ V +N S S Sbjct: 452 AEIDGRSVSLYYTGEK-------GQRQERTGKNSTWSGESKTLVLSNLSYS 495
>NUCL_RAT (P13383) Nucleolin (Protein C23)| Length = 712 Score = 59.3 bits (142), Expect = 9e-09 Identities = 31/68 (45%), Positives = 44/68 (64%) Frame = -3 Query: 521 LKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 342 LK +FEG V AR++ +R+TG S+GFGFV F++ +DAKAA +AM+ E+DG + L Sbjct: 590 LKESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 646 Query: 341 AAQNPPAG 318 A G Sbjct: 647 AKPKGEGG 654 Score = 44.7 bits (104), Expect = 2e-04 Identities = 24/59 (40%), Positives = 37/59 (62%) Frame = -3 Query: 455 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQEKT 279 G+S+G+ F+ F + +DAK AL + + +E++GR +RL L P GS A+SQ KT Sbjct: 522 GKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQG---PRGS--PNARSQPSKT 575 Score = 40.0 bits (92), Expect = 0.006 Identities = 30/111 (27%), Positives = 50/111 (45%) Frame = -3 Query: 557 AGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDG 378 A NL + + LK FE V R++ + GRS+G ++ F + DA+ L+ G Sbjct: 400 AKNLSFNITEDELKEVFEDA---VEIRLVSQ--DGRSKGIAYIEFKSEADAEKNLEEKQG 454 Query: 377 VELDGRPLRLSLAAQNPPAGSTPSXAQSQQEKTASRGSEAEPQVXNNTSTS 225 E+DGR + L + Q + K ++ E++ V +N S S Sbjct: 455 AEIDGRSVSLYYTGEK-------GQRQERTGKNSTWSGESKTLVLSNLSYS 498
>NUCL_MOUSE (P09405) Nucleolin (Protein C23)| Length = 706 Score = 59.3 bits (142), Expect = 9e-09 Identities = 31/68 (45%), Positives = 44/68 (64%) Frame = -3 Query: 521 LKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 342 LK +FEG V AR++ +R+TG S+GFGFV F++ +DAKAA +AM+ E+DG + L Sbjct: 584 LKESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 640 Query: 341 AAQNPPAG 318 A G Sbjct: 641 AKPKGEGG 648 Score = 41.2 bits (95), Expect = 0.003 Identities = 16/42 (38%), Positives = 28/42 (66%) Frame = -3 Query: 455 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQN 330 G+ +G+ F+ F + +DAK AL + + +E++GR +RL L N Sbjct: 520 GKPKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGSN 561 Score = 40.0 bits (92), Expect = 0.006 Identities = 28/111 (25%), Positives = 47/111 (42%) Frame = -3 Query: 557 AGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDG 378 A NL + + LK FE + G+S+G ++ F + DA+ L+ G Sbjct: 398 AKNLSFNITEDELKEVFED-----AMEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQG 452 Query: 377 VELDGRPLRLSLAAQNPPAGSTPSXAQSQQEKTASRGSEAEPQVXNNTSTS 225 E+DGR + L + Q + KT++ E++ V +N S S Sbjct: 453 AEIDGRSVSLYYTGEK-------GQRQERTGKTSTWSGESKTLVLSNLSYS 496
>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast| precursor (PSRP-2) Length = 260 Score = 58.5 bits (140), Expect = 2e-08 Identities = 31/80 (38%), Positives = 49/80 (61%) Frame = -3 Query: 578 DGTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKA 399 + YKVY GNL V LK F + ++GA+V T +S GFGFVSF + ++ +A Sbjct: 181 ESPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEA 240 Query: 398 ALQAMDGVELDGRPLRLSLA 339 A+QA++ L+G+ +R++ A Sbjct: 241 AIQALNNSVLEGQKIRVNKA 260 Score = 58.2 bits (139), Expect = 2e-08 Identities = 27/99 (27%), Positives = 57/99 (57%) Frame = -3 Query: 578 DGTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKA 399 +G ++Y GN+ + L+T E + A V++++ +GRSR FGFV+ T++DA A Sbjct: 81 EGARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANA 140 Query: 398 ALQAMDGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQEK 282 ++ ++ E+ GR +++++ + P G + Q++ + Sbjct: 141 VIEKLNDTEIGGRKIKVNI-TEKPLEGMDIATTQAEDSQ 178
>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein| 23) (RNA-binding region-containing protein 4) (Splicing factor SF2) Length = 439 Score = 58.2 bits (139), Expect = 2e-08 Identities = 29/97 (29%), Positives = 53/97 (54%) Frame = -3 Query: 575 GTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 396 G ++Y G+L + + L+ FE + ++ + DTGRS+G+GF++F + A+ A Sbjct: 261 GPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRA 320 Query: 395 LQAMDGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQE 285 L+ ++G EL GRP+R+ + G+ + QE Sbjct: 321 LEQLNGFELAGRPMRVGHVTERLDGGTDITFPDGDQE 357 Score = 30.4 bits (67), Expect = 4.6 Identities = 20/70 (28%), Positives = 33/70 (47%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 V+ L +R L+ F + R+I +R++ RS+G +V F IQ A+ + Sbjct: 168 VFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GL 226 Query: 383 DGVELDGRPL 354 G L G P+ Sbjct: 227 TGQRLLGVPI 236
>NUCL_PONPY (Q5RF26) Nucleolin| Length = 711 Score = 58.2 bits (139), Expect = 2e-08 Identities = 30/68 (44%), Positives = 44/68 (64%) Frame = -3 Query: 521 LKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 342 LK +F+G V AR++ +R+TG S+GFGFV F++ +DAKAA +AM+ E+DG + L Sbjct: 589 LKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 645 Query: 341 AAQNPPAG 318 A G Sbjct: 646 AKPKGEGG 653 Score = 44.3 bits (103), Expect = 3e-04 Identities = 29/91 (31%), Positives = 46/91 (50%) Frame = -3 Query: 551 NLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVE 372 NL + L+ FE + + + G+S+G+ F+ F + +DAK AL + + E Sbjct: 493 NLSYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFASFEDAKEALNSCNKRE 548 Query: 371 LDGRPLRLSLAAQNPPAGSTPSXAQSQQEKT 279 ++GR +RL L P GS A+SQ KT Sbjct: 549 IEGRAIRLELQG---PRGS--PNARSQPSKT 574 Score = 38.1 bits (87), Expect = 0.022 Identities = 22/70 (31%), Positives = 32/70 (45%) Frame = -3 Query: 557 AGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDG 378 A NL + V LK FE A + G+S+G ++ F T DA+ + G Sbjct: 398 AKNLPYKVTQDELKEVFED-----AAEIRLVSKDGKSKGIAYIEFKTEADAEKTFEEKQG 452 Query: 377 VELDGRPLRL 348 E+DGR + L Sbjct: 453 TEIDGRSISL 462
>NUCL_MACFA (Q4R4J7) Nucleolin| Length = 710 Score = 58.2 bits (139), Expect = 2e-08 Identities = 30/68 (44%), Positives = 44/68 (64%) Frame = -3 Query: 521 LKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 342 LK +F+G V AR++ +R+TG S+GFGFV F++ +DAKAA +AM+ E+DG + L Sbjct: 588 LKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 644 Query: 341 AAQNPPAG 318 A G Sbjct: 645 AKPKGEGG 652 Score = 44.3 bits (103), Expect = 3e-04 Identities = 29/91 (31%), Positives = 46/91 (50%) Frame = -3 Query: 551 NLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVE 372 NL + L+ FE + + + G+S+G+ F+ F + +DAK AL + + E Sbjct: 492 NLSYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFASFEDAKEALNSCNKRE 547 Query: 371 LDGRPLRLSLAAQNPPAGSTPSXAQSQQEKT 279 ++GR +RL L P GS A+SQ KT Sbjct: 548 IEGRAIRLELQG---PRGS--PNARSQPSKT 573 Score = 38.1 bits (87), Expect = 0.022 Identities = 22/70 (31%), Positives = 32/70 (45%) Frame = -3 Query: 557 AGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDG 378 A NL + V LK FE A + G+S+G ++ F T DA+ + G Sbjct: 397 AKNLPYKVTQDELKEVFED-----AAEIRLVSKDGKSKGIAYIEFKTEADAEKTFEEKQG 451 Query: 377 VELDGRPLRL 348 E+DGR + L Sbjct: 452 TEIDGRSISL 461
>NUCL_HUMAN (P19338) Nucleolin (Protein C23)| Length = 709 Score = 58.2 bits (139), Expect = 2e-08 Identities = 30/68 (44%), Positives = 44/68 (64%) Frame = -3 Query: 521 LKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 342 LK +F+G V AR++ +R+TG S+GFGFV F++ +DAKAA +AM+ E+DG + L Sbjct: 587 LKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 643 Query: 341 AAQNPPAG 318 A G Sbjct: 644 AKPKGEGG 651 Score = 44.3 bits (103), Expect = 3e-04 Identities = 29/91 (31%), Positives = 46/91 (50%) Frame = -3 Query: 551 NLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVE 372 NL + L+ FE + + + G+S+G+ F+ F + +DAK AL + + E Sbjct: 491 NLSYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFASFEDAKEALNSCNKRE 546 Query: 371 LDGRPLRLSLAAQNPPAGSTPSXAQSQQEKT 279 ++GR +RL L P GS A+SQ KT Sbjct: 547 IEGRAIRLELQG---PRGS--PNARSQPSKT 572 Score = 38.1 bits (87), Expect = 0.022 Identities = 22/70 (31%), Positives = 32/70 (45%) Frame = -3 Query: 557 AGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDG 378 A NL + V LK FE A + G+S+G ++ F T DA+ + G Sbjct: 396 AKNLPYKVTQDELKEVFED-----AAEIRLVSKDGKSKGIAYIEFKTEADAEKTFEEKQG 450 Query: 377 VELDGRPLRL 348 E+DGR + L Sbjct: 451 TEIDGRSISL 460
>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)| Length = 282 Score = 57.0 bits (136), Expect = 5e-08 Identities = 28/71 (39%), Positives = 41/71 (57%) Frame = -3 Query: 521 LKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 342 L+ F L G V++++ TGRSRGF FV F I D+K A++ +G+ELDGR +R+ Sbjct: 135 LREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDY 194 Query: 341 AAQNPPAGSTP 309 + TP Sbjct: 195 SITKRAHTPTP 205
>TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)| Length = 281 Score = 57.0 bits (136), Expect = 5e-08 Identities = 28/71 (39%), Positives = 41/71 (57%) Frame = -3 Query: 521 LKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 342 L+ F L G V++++ TGRSRGF FV F I D+K A++ +G+ELDGR +R+ Sbjct: 133 LREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDY 192 Query: 341 AAQNPPAGSTP 309 + TP Sbjct: 193 SITKRAHTPTP 203
>SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 221 Score = 56.2 bits (134), Expect = 8e-08 Identities = 35/104 (33%), Positives = 48/104 (46%) Frame = -3 Query: 578 DGTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKA 399 +G + NL + L+ FE + + +R T SRGF FV FH +DA+ Sbjct: 11 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAED 70 Query: 398 ALQAMDGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQEKTASRG 267 A+ AMDG LDGR LR+ +A P S S + S G Sbjct: 71 AMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGSSG 114
>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) (RNPL) Length = 157 Score = 55.5 bits (132), Expect = 1e-07 Identities = 28/79 (35%), Positives = 46/79 (58%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 K++ G L + AL+ F + V+ +R+T RSRGFGF++F + A A++A Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRA 66 Query: 386 MDGVELDGRPLRLSLAAQN 330 M+G LDGR +R+ A ++ Sbjct: 67 MNGESLDGRQIRVDHAGKS 85
>SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 55.5 bits (132), Expect = 1e-07 Identities = 32/88 (36%), Positives = 44/88 (50%) Frame = -3 Query: 578 DGTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKA 399 +G + NL + L+ FE + + +R T SRGF FV FH +DA+ Sbjct: 10 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAED 69 Query: 398 ALQAMDGVELDGRPLRLSLAAQNPPAGS 315 A+ AMDG LDGR LR+ +A P S Sbjct: 70 AMDAMDGAVLDGRELRVQMARYGRPPDS 97
>SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 55.5 bits (132), Expect = 1e-07 Identities = 32/88 (36%), Positives = 44/88 (50%) Frame = -3 Query: 578 DGTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKA 399 +G + NL + L+ FE + + +R T SRGF FV FH +DA+ Sbjct: 10 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAED 69 Query: 398 ALQAMDGVELDGRPLRLSLAAQNPPAGS 315 A+ AMDG LDGR LR+ +A P S Sbjct: 70 AMDAMDGAVLDGRELRVQMARYGRPPDS 97
>SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) (Putative myelin regulatory factor 1) (MRF-1) Length = 220 Score = 55.5 bits (132), Expect = 1e-07 Identities = 32/88 (36%), Positives = 44/88 (50%) Frame = -3 Query: 578 DGTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKA 399 +G + NL + L+ FE + + +R T SRGF FV FH +DA+ Sbjct: 10 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAED 69 Query: 398 ALQAMDGVELDGRPLRLSLAAQNPPAGS 315 A+ AMDG LDGR LR+ +A P S Sbjct: 70 AMDAMDGAVLDGRELRVQMARYGRPPDS 97
>SFRS2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 220 Score = 55.5 bits (132), Expect = 1e-07 Identities = 32/88 (36%), Positives = 44/88 (50%) Frame = -3 Query: 578 DGTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKA 399 +G + NL + L+ FE + + +R T SRGF FV FH +DA+ Sbjct: 10 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAED 69 Query: 398 ALQAMDGVELDGRPLRLSLAAQNPPAGS 315 A+ AMDG LDGR LR+ +A P S Sbjct: 70 AMDAMDGAVLDGRELRVQMARYGRPPDS 97
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) Length = 153 Score = 55.1 bits (131), Expect = 2e-07 Identities = 33/100 (33%), Positives = 55/100 (55%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 K++ G L + AL+ F + V+ +R+T RSRGFGF++F + A A++A Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66 Query: 386 MDGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQEKTASRG 267 M+G LDGR +R+ A ++ A + A + ++ SRG Sbjct: 67 MNGESLDGRQIRVDHAGKS--ARGSRGGAFGGRGRSYSRG 104
>YDB2_SCHPO (Q10355) Hypothetical RNA-binding protein C22E12.02 in chromosome I| Length = 219 Score = 54.3 bits (129), Expect = 3e-07 Identities = 30/84 (35%), Positives = 47/84 (55%) Frame = -3 Query: 581 DDGTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 402 D ++++ GNLG V +L AF P LV +V+ +R+ G++RGFGFVSF Sbjct: 26 DPNHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDRE-GKTRGFGFVSFKDSDQFL 84 Query: 401 AALQAMDGVELDGRPLRLSLAAQN 330 A + +G + RP++LS A + Sbjct: 85 KAWREKNGKYIGSRPVKLSRATSD 108
>GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)| Length = 142 Score = 53.9 bits (128), Expect = 4e-07 Identities = 25/62 (40%), Positives = 44/62 (70%) Frame = -3 Query: 524 ALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLS 345 +L +AF ++ +++I +R+T RSRGFGFV+F T + ++A++ M+G ELDGR + ++ Sbjct: 2 SLHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVN 61 Query: 344 LA 339 A Sbjct: 62 EA 63
>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA| Length = 101 Score = 53.5 bits (127), Expect = 5e-07 Identities = 27/75 (36%), Positives = 41/75 (54%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 +Y GNL + V L F + ++ +R+TGR RGFGFV + AA++A+ Sbjct: 3 IYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIEAL 62 Query: 383 DGVELDGRPLRLSLA 339 DG E GR L+++ A Sbjct: 63 DGAEWMGRDLKVNKA 77
>TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (RA301) Length = 288 Score = 53.5 bits (127), Expect = 5e-07 Identities = 26/84 (30%), Positives = 43/84 (51%) Frame = -3 Query: 521 LKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 342 L+ F + +++++ + RSRGF FV F + DAK A + +G+ELDGR +R+ Sbjct: 134 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 193 Query: 341 AAQNPPAGSTPSXAQSQQEKTASR 270 + P TP + +SR Sbjct: 194 SITKRPHTPTPGIYMGRPTYGSSR 217
>TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (Silica-induced gene 41 protein) (SIG-41) Length = 288 Score = 53.5 bits (127), Expect = 5e-07 Identities = 26/84 (30%), Positives = 43/84 (51%) Frame = -3 Query: 521 LKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 342 L+ F + +++++ + RSRGF FV F + DAK A + +G+ELDGR +R+ Sbjct: 134 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 193 Query: 341 AAQNPPAGSTPSXAQSQQEKTASR 270 + P TP + +SR Sbjct: 194 SITKRPHTPTPGIYMGRPTYGSSR 217
>TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) Length = 288 Score = 53.5 bits (127), Expect = 5e-07 Identities = 26/84 (30%), Positives = 43/84 (51%) Frame = -3 Query: 521 LKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 342 L+ F + +++++ + RSRGF FV F + DAK A + +G+ELDGR +R+ Sbjct: 134 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 193 Query: 341 AAQNPPAGSTPSXAQSQQEKTASR 270 + P TP + +SR Sbjct: 194 SITKRPHTPTPGIYMGRPTYGSSR 217
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 52.8 bits (125), Expect = 9e-07 Identities = 25/82 (30%), Positives = 45/82 (54%) Frame = -3 Query: 581 DDGTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 402 D V+ GN+ + LK F +V R++++R+TG+ +G+GF + + A Sbjct: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71 Query: 401 AALQAMDGVELDGRPLRLSLAA 336 +A++ ++G E GR LR+ AA Sbjct: 72 SAMRNLNGREFSGRALRVDNAA 93
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 52.8 bits (125), Expect = 9e-07 Identities = 25/82 (30%), Positives = 45/82 (54%) Frame = -3 Query: 581 DDGTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 402 D V+ GN+ + LK F +V R++++R+TG+ +G+GF + + A Sbjct: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71 Query: 401 AALQAMDGVELDGRPLRLSLAA 336 +A++ ++G E GR LR+ AA Sbjct: 72 SAMRNLNGREFSGRALRVDNAA 93
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 52.0 bits (123), Expect = 1e-06 Identities = 25/82 (30%), Positives = 45/82 (54%) Frame = -3 Query: 581 DDGTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 402 D V+ GN+ + LK F +V R++++R+TG+ +G+GF + + A Sbjct: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71 Query: 401 AALQAMDGVELDGRPLRLSLAA 336 +A++ ++G E GR LR+ AA Sbjct: 72 SAMRNLNGREFSGRALRVDNAA 93
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 52.0 bits (123), Expect = 1e-06 Identities = 25/82 (30%), Positives = 45/82 (54%) Frame = -3 Query: 581 DDGTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 402 D V+ GN+ + LK F +V R++++R+TG+ +G+GF + + A Sbjct: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71 Query: 401 AALQAMDGVELDGRPLRLSLAA 336 +A++ ++G E GR LR+ AA Sbjct: 72 SAMRNLNGREFSGRALRVDNAA 93
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 52.0 bits (123), Expect = 1e-06 Identities = 25/82 (30%), Positives = 45/82 (54%) Frame = -3 Query: 581 DDGTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 402 D V+ GN+ + LK F +V R++++R+TG+ +G+GF + + A Sbjct: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71 Query: 401 AALQAMDGVELDGRPLRLSLAA 336 +A++ ++G E GR LR+ AA Sbjct: 72 SAMRNLNGREFSGRALRVDNAA 93
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 52.0 bits (123), Expect = 1e-06 Identities = 25/82 (30%), Positives = 45/82 (54%) Frame = -3 Query: 581 DDGTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 402 D V+ GN+ + LK F +V R++++R+TG+ +G+GF + + A Sbjct: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71 Query: 401 AALQAMDGVELDGRPLRLSLAA 336 +A++ ++G E GR LR+ AA Sbjct: 72 SAMRNLNGREFSGRALRVDNAA 93
>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1| Length = 861 Score = 52.0 bits (123), Expect = 1e-06 Identities = 36/110 (32%), Positives = 53/110 (48%), Gaps = 5/110 (4%) Frame = -3 Query: 581 DDGTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGR-----SRGFGFVSFHT 417 D T ++ NL + + L F+ G V A+V + D + S GFGFV F T Sbjct: 636 DGPTVSIFIKNLNFKTTSQQLTDRFKVFSGFVVAQVKTKPDPKQKNKVLSMGFGFVEFRT 695 Query: 416 IQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQEKTASRG 267 + A A + AMDG +DG ++L L+ + AG SQ++K A G Sbjct: 696 KEQATAVISAMDGTVIDGHKIQLKLSHRQGNAG-------SQEKKKAKNG 738 Score = 31.6 bits (70), Expect = 2.1 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 2/85 (2%) Frame = -3 Query: 449 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQEKTAS- 273 +RGF FV F ++A+ A+ + GV L GR L + PA + A+ + E+ Sbjct: 777 ARGFAFVEFVLPKEAENAMDQLQGVHLLGRRLVMQ------PAEQEAANAEEELERMTKK 830 Query: 272 -RGSEAEPQVXNNTSTSGQFGGEME 201 R A ++ T +G+ +ME Sbjct: 831 VRKQAAVSEIAAMTRNAGKRKLDME 855
>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1| Length = 841 Score = 51.6 bits (122), Expect = 2e-06 Identities = 35/98 (35%), Positives = 48/98 (48%), Gaps = 5/98 (5%) Frame = -3 Query: 572 TYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERD---TGR--SRGFGFVSFHTIQD 408 T V+ NL + AL F+ PG V A V + D +G+ S GFGFV F T + Sbjct: 616 TVAVFVKNLNFATTVQALSDLFKPLPGFVVATVKTKPDPKNSGKTLSMGFGFVEFRTKEQ 675 Query: 407 AKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSXAQS 294 A A+ +DG LDG L+L L+ + S S +S Sbjct: 676 ANVAISTLDGHVLDGHKLQLKLSHKQGTGTSASSIKKS 713 Score = 38.9 bits (89), Expect = 0.013 Identities = 17/41 (41%), Positives = 28/41 (68%) Frame = -3 Query: 449 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNP 327 +RGF FV F+ +++A+ A+ ++GV L GR L + A Q+P Sbjct: 756 ARGFAFVEFNLMKEAETAMSQLEGVHLLGRRLVMQYAEQDP 796 Score = 33.5 bits (75), Expect = 0.55 Identities = 18/75 (24%), Positives = 35/75 (46%) Frame = -3 Query: 572 TYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAAL 393 T +++ N+ + ++ F L + + TG+S+GF +V F +DA A Sbjct: 309 TGRLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKEDATRAY 368 Query: 392 QAMDGVELDGRPLRL 348 +++D GR L + Sbjct: 369 RSLDKQIFQGRLLHI 383
>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) (Glycoprotein p43) Length = 391 Score = 50.8 bits (120), Expect = 3e-06 Identities = 26/78 (33%), Positives = 44/78 (56%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 K++ G L AL+ F +V ++ +R+T +SRGF FV+F + DAK A + Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68 Query: 386 MDGVELDGRPLRLSLAAQ 333 M+G LDG+ +++ A + Sbjct: 69 MNGKSLDGKAIKVEQATK 86
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 50.4 bits (119), Expect = 4e-06 Identities = 28/83 (33%), Positives = 46/83 (55%) Frame = -3 Query: 575 GTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 396 G +Y G+L + V L AF +V RV + T RS G+G+V+F QDA A Sbjct: 34 GNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARA 93 Query: 395 LQAMDGVELDGRPLRLSLAAQNP 327 +Q ++ + L G+P+R+ + ++P Sbjct: 94 IQELNYIPLYGKPIRVMYSHRDP 116 Score = 46.6 bits (109), Expect = 6e-05 Identities = 24/68 (35%), Positives = 39/68 (57%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 VY NL LK AF G+ G + + V+ + G+S+GFGFV+F DA A++++ Sbjct: 217 VYVKNLAESTTDDDLKNAF-GEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESL 275 Query: 383 DGVELDGR 360 +G + D + Sbjct: 276 NGHKFDDK 283 Score = 37.7 bits (86), Expect = 0.029 Identities = 22/75 (29%), Positives = 38/75 (50%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 +Y NL + LK F G V + + G S+G GFV+F T ++A A+ + Sbjct: 320 LYVKNLDPSISDEKLKEIFSPF-GTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQL 378 Query: 383 DGVELDGRPLRLSLA 339 G ++ +PL +++A Sbjct: 379 SGKMIESKPLYVAIA 393 Score = 35.4 bits (80), Expect = 0.14 Identities = 18/72 (25%), Positives = 38/72 (52%) Frame = -3 Query: 575 GTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 396 G ++ NL + AL F +V +V + +G+S+G+GFV + + A+ A Sbjct: 122 GAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQKA 180 Query: 395 LQAMDGVELDGR 360 ++ ++G+ L+ + Sbjct: 181 IEKLNGMLLNDK 192
>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 48.9 bits (115), Expect = 1e-05 Identities = 25/78 (32%), Positives = 43/78 (55%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 K++ G L AL+ F +V ++ +R+T +SRGF FV+F + DAK + Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARD 68 Query: 386 MDGVELDGRPLRLSLAAQ 333 M+G LDG+ +++ A + Sbjct: 69 MNGKSLDGKAIKVEQATK 86
>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1| Length = 838 Score = 48.9 bits (115), Expect = 1e-05 Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 5/109 (4%) Frame = -3 Query: 581 DDGTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRS-----RGFGFVSFHT 417 D T ++ NL + + L F+ G V A+V + D S GFGF+ F T Sbjct: 608 DGPTVSIFVKNLNFSTTSAQLAEKFKPFSGFVVAQVKTKPDPKNSDKKLSMGFGFIEFRT 667 Query: 416 IQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQEKTASR 270 + A A + AMDG +DG ++L ++ + S P ++ ++K + + Sbjct: 668 KEQAGAVIAAMDGAVIDGHKIQLKISHKQ---SSLPKTSKGSKKKISGK 713 Score = 30.8 bits (68), Expect = 3.5 Identities = 16/39 (41%), Positives = 22/39 (56%) Frame = -3 Query: 449 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQ 333 +RGF FV F +A+ A+ + GV L GR L + A Q Sbjct: 751 ARGFAFVEFLLPSEAENAMDQLQGVHLLGRRLVMQYAEQ 789
>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4| (RNA-binding protein srp-2) (CeSC35) Length = 196 Score = 48.1 bits (113), Expect = 2e-05 Identities = 27/86 (31%), Positives = 46/86 (53%) Frame = -3 Query: 578 DGTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKA 399 +G + NL + L+ FE + + ++ + +S+GFGFV F+ +DA+ Sbjct: 16 NGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEH 75 Query: 398 ALQAMDGVELDGRPLRLSLAAQNPPA 321 AL DG +DGR LR++LA + P+ Sbjct: 76 ALDRTDGKLVDGRELRVTLAKYDRPS 101
>REFP2_MOUSE (Q9JJW6) RNA and export factor-binding protein 2| Length = 218 Score = 48.1 bits (113), Expect = 2e-05 Identities = 34/101 (33%), Positives = 49/101 (48%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 K+ NL +GV ++ F L A V ++R +GRS G V F DA A++ Sbjct: 76 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQ 134 Query: 386 MDGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQEKTASRGS 264 GV LDGRP+ + L A P+ + ++ T SRGS Sbjct: 135 YKGVPLDGRPMDIQLVASQIDPQRRPAQSGNRGGMTRSRGS 175
>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)| binding protein) (ePABP) Length = 629 Score = 47.8 bits (112), Expect = 3e-05 Identities = 26/75 (34%), Positives = 43/75 (57%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 VY N G + L+ F + +V+ + DTGRSRGFGFV++ ++A+ A+ M Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKAVSEM 251 Query: 383 DGVELDGRPLRLSLA 339 +G E++GR + + A Sbjct: 252 NGKEVNGRMIYVGRA 266 Score = 41.2 bits (95), Expect = 0.003 Identities = 25/75 (33%), Positives = 41/75 (54%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 +Y NL G+ L+ F + A+V+ E G S+GFGFV F + ++A A+ M Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEM 353 Query: 383 DGVELDGRPLRLSLA 339 +G + +PL ++LA Sbjct: 354 NGRIVSTKPLYVALA 368 Score = 38.9 bits (89), Expect = 0.013 Identities = 24/72 (33%), Positives = 36/72 (50%) Frame = -3 Query: 575 GTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 396 G V+ NL + AL F ++ +V+ D SRG+GFV F T + A A Sbjct: 97 GVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVC--DEHGSRGYGFVHFETQEAANRA 154 Query: 395 LQAMDGVELDGR 360 +Q M+G+ L+ R Sbjct: 155 IQTMNGMLLNDR 166
>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1| Length = 878 Score = 47.8 bits (112), Expect = 3e-05 Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 5/102 (4%) Frame = -3 Query: 572 TYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGR-----SRGFGFVSFHTIQD 408 T ++ NL + + L F+ G V A+V + D + S GFGF F T + Sbjct: 650 TVSIFIKNLNFSTTSQQLTEKFKPFNGFVVAQVKTKPDPKQPGKTLSMGFGFAEFKTKEQ 709 Query: 407 AKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQEK 282 A A + AM+G LDG L+L L+ + G++ + A S+++K Sbjct: 710 ANAVISAMEGTILDGHKLQLKLSHRQ---GTSTTNASSKKKK 748 Score = 33.1 bits (74), Expect = 0.71 Identities = 16/41 (39%), Positives = 24/41 (58%) Frame = -3 Query: 449 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNP 327 +RGF FV F ++A+ A+ + GV L GR L + Q+P Sbjct: 791 ARGFAFVEFLLPKEAENAMDQLQGVHLLGRRLVMEFVEQDP 831
>THOC4_HUMAN (Q86V81) THO complex subunit 4 (Tho4) (Ally of AML-1 and LEF-1)| (Transcriptional coactivator Aly/REF) (bZIP-enhancing factor BEF) Length = 256 Score = 47.8 bits (112), Expect = 3e-05 Identities = 32/101 (31%), Positives = 50/101 (49%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 K+ NL +GV ++ F L A V ++R +GRS G V F DA A++ Sbjct: 106 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQ 164 Query: 386 MDGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQEKTASRGS 264 +GV LDGRP+ + L A P+ + ++ T +RG+ Sbjct: 165 YNGVPLDGRPMNIQLVTSQIDAQRRPAQSVNRGGMTRNRGA 205
>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1| Length = 887 Score = 47.8 bits (112), Expect = 3e-05 Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 6/106 (5%) Frame = -3 Query: 581 DDGTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGR-----SRGFGFVSFHT 417 D T ++ NL + L F+ G V A+V + D S GFGFV F T Sbjct: 659 DGPTVSIFIKNLNFSTTNQNLTDRFKVFTGFVVAQVKTKPDPKHQGKTLSMGFGFVEFRT 718 Query: 416 IQDAKAALQAMDGVELDGRPLRLSLA-AQNPPAGSTPSXAQSQQEK 282 + A A + AMDG +DG ++L L+ Q +G+T + + + K Sbjct: 719 KEQANAVIAAMDGTVIDGHKIQLKLSHRQASQSGNTKTKSNKKSGK 764 Score = 34.3 bits (77), Expect = 0.32 Identities = 24/84 (28%), Positives = 39/84 (46%) Frame = -3 Query: 449 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQEKTASR 270 +RGF FV F ++A+ A+ + GV L GR L + A ++ A +E+ A Sbjct: 802 ARGFAFVEFLLPKEAENAMDQLHGVHLLGRRLVMQYAEED---------AVDAEEEIARM 852 Query: 269 GSEAEPQVXNNTSTSGQFGGEMEK 198 + QV N + + GG +K Sbjct: 853 TKKVRKQVATNEMAALRNGGGRKK 876 Score = 30.4 bits (67), Expect = 4.6 Identities = 22/103 (21%), Positives = 46/103 (44%) Frame = -3 Query: 497 PGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAG 318 P L+ I G SR FGF+ + +DA A++ +G ++ + +S+ A++ Sbjct: 40 PDLITDVKILRDRNGESRRFGFIGYRNEEDAFDAVEYFNGSFINTSKIEVSM-AKSFADP 98 Query: 317 STPSXAQSQQEKTASRGSEAEPQVXNNTSTSGQFGGEMEKSNL 189 P + ++ + R E E ++ + + E + SN+ Sbjct: 99 RVPQPMKEKRREALKRFREKEEKLLQEENRKKKKVDENKHSNI 141
>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 47.8 bits (112), Expect = 3e-05 Identities = 25/78 (32%), Positives = 43/78 (55%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 K++ G L AL+ F +V ++ +R+T +SRGF FV+ + DAK A + Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAKDAARD 68 Query: 386 MDGVELDGRPLRLSLAAQ 333 M+G LDG+ +++ A + Sbjct: 69 MNGKSLDGKAIKVEQATK 86
>MRD1_NEUCR (Q7SG09) Multiple RNA-binding domain-containing protein 1| Length = 827 Score = 47.4 bits (111), Expect = 4e-05 Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 5/109 (4%) Frame = -3 Query: 572 TYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGR-----SRGFGFVSFHTIQD 408 T ++ NL + + L AF+ G V A+V + D + S GFGFV+F T Sbjct: 598 TSSLFVRNLNFSTTSQGLTDAFKHLDGFVQAKVKTKTDPKKPGQVLSMGFGFVAFRTKDQ 657 Query: 407 AKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQEKTASRGSE 261 A+AAL+ MDG LD + + + + A + + +K A++G++ Sbjct: 658 AQAALKVMDGQVLDAHKISVKASHRGLDA-AEERRREDMAKKAANQGTK 705 Score = 32.7 bits (73), Expect = 0.93 Identities = 22/76 (28%), Positives = 35/76 (46%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 K+ NL + V ++T F LV R+ ++ SRGF F F T ++A A + Sbjct: 705 KLVVKNLPFEVTKKEVRTLFSAYGKLVALRIP-KKFNQSSRGFAFAEFSTAKEALNAFNS 763 Query: 386 MDGVELDGRPLRLSLA 339 + + GR L + A Sbjct: 764 LKDTHILGRRLVIDFA 779
>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein| 1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B) (PABP 1-B) (xPABP1-B) Length = 633 Score = 47.4 bits (111), Expect = 4e-05 Identities = 28/70 (40%), Positives = 40/70 (57%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 VY N G + LK F GQ G + + D G+SRGFGFVSF +DA+ A+ M Sbjct: 193 VYIKNFGEDMDDERLKEWF-GQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDM 251 Query: 383 DGVELDGRPL 354 +G +L+G+ + Sbjct: 252 NGKDLNGKAI 261 Score = 42.7 bits (99), Expect = 0.001 Identities = 26/75 (34%), Positives = 42/75 (56%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 +Y NL G+ L+ F + A+V+ E GRS+GFGFV F + ++A A+ M Sbjct: 296 LYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 353 Query: 383 DGVELDGRPLRLSLA 339 +G + +PL ++LA Sbjct: 354 NGRIVATKPLYVALA 368 Score = 36.2 bits (82), Expect = 0.084 Identities = 21/72 (29%), Positives = 36/72 (50%) Frame = -3 Query: 575 GTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 396 G ++ NL + AL F ++ +V+ D S+G+GFV F T + A+ A Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYGFVHFETQEAAERA 154 Query: 395 LQAMDGVELDGR 360 + M+G+ L+ R Sbjct: 155 IDKMNGMLLNDR 166
>SCE3_SCHPO (O14369) Probable RNA-binding protein sce3| Length = 388 Score = 47.4 bits (111), Expect = 4e-05 Identities = 28/77 (36%), Positives = 43/77 (55%) Frame = -3 Query: 569 YKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQ 390 + + GNL + + L F G+ R++ + T RSRGFG+V F T AAL Sbjct: 94 FTAHVGNLSFDLTENDLGDFFG--EGVTSIRLVIDPLTERSRGFGYVEFETADTLSAAL- 150 Query: 389 AMDGVELDGRPLRLSLA 339 A+ G +L GRP+R+++A Sbjct: 151 ALSGEDLMGRPVRITVA 167
>THOC4_MOUSE (O08583) THO complex subunit 4 (Tho4) (RNA and export| factor-binding protein 1) (REF1-I) (Ally of AML-1 and LEF-1) (Aly/REF) Length = 254 Score = 47.0 bits (110), Expect = 5e-05 Identities = 32/101 (31%), Positives = 49/101 (48%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 K+ NL +GV ++ F L A V ++R +GRS G V F DA A++ Sbjct: 105 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQ 163 Query: 386 MDGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQEKTASRGS 264 +GV LDGRP+ + L P+ + ++ T +RGS Sbjct: 164 YNGVPLDGRPMNIQLVTSQIDTQRRPAQSINRGGMTRNRGS 204
>TRA2_DROVI (O02008) Transformer-2 sex-determining protein| Length = 272 Score = 47.0 bits (110), Expect = 5e-05 Identities = 25/85 (29%), Positives = 40/85 (47%) Frame = -3 Query: 479 RVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSXA 300 +++ + T RSRGF F+ F + DA+ A A G+E+DGR +R+ + TP Sbjct: 135 QMVIDAHTHRSRGFCFIYFENLGDARVAKDACTGMEVDGRRIRVDYSITQRAHTPTPGVY 194 Query: 299 QSQQEKTASRGSEAEPQVXNNTSTS 225 + + R S +TS S Sbjct: 195 MGRPSRPLGRRSRERDYSTRDTSRS 219
>PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 47.0 bits (110), Expect = 5e-05 Identities = 37/134 (27%), Positives = 57/134 (42%), Gaps = 8/134 (5%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 +Y G L V L AF + ++ + +T + RGF FV F +DA AA+ M Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67 Query: 383 DGVELDGRPLRLSLA-------AQNPPAGSTPSXAQSQQEKTASRGSEAE-PQVXNNTST 228 + EL GR +R++LA + P S + KT E E P+ + Sbjct: 68 NESELFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTLEENKEEEGPEPPKAEAQ 127 Query: 227 SGQFGGEMEKSNLQ 186 G+ + +SN Q Sbjct: 128 EGEPTAKKARSNPQ 141
>SAP49_SCHPO (O14102) Spliceosome-associated protein 49| Length = 335 Score = 46.6 bits (109), Expect = 6e-05 Identities = 27/82 (32%), Positives = 43/82 (52%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 ++ GNL V L F LV A + + GRS+G+GFVS+ + + A AA++AM Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAM 160 Query: 383 DGVELDGRPLRLSLAAQNPPAG 318 + L +P+ +S A + G Sbjct: 161 NNQFLMNKPITVSYAFKREGKG 182 Score = 37.7 bits (86), Expect = 0.029 Identities = 24/78 (30%), Positives = 38/78 (48%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 +Y GNL V L +V + +R GFGF F QD + A Q + Sbjct: 13 IYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQIL 72 Query: 383 DGVELDGRPLRLSLAAQN 330 + V+L G+P+R++ A+Q+ Sbjct: 73 NQVKLFGKPIRVNRASQD 90
>YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 in chromosome I| Length = 297 Score = 46.6 bits (109), Expect = 6e-05 Identities = 24/70 (34%), Positives = 38/70 (54%) Frame = -3 Query: 479 RVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSXA 300 R++ E T SRGFGF+SF T+++A +A+ ++ E GR L + A ++ P TP Sbjct: 131 RIMREPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQKAKRSRPHSPTPGKY 190 Query: 299 QSQQEKTASR 270 + SR Sbjct: 191 MGYDRRRNSR 200
>MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing protein 1| Length = 858 Score = 46.2 bits (108), Expect = 8e-05 Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 5/89 (5%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGR-----SRGFGFVSFHTIQDAKA 399 +Y NL + L F G AR+ + D R S G+GFV F +I A+ Sbjct: 623 LYVKNLSFSTTDERLTAFFHGLSDFAFARIQTKPDPRRPGARLSMGYGFVGFKSIDAART 682 Query: 398 ALQAMDGVELDGRPLRLSLAAQNPPAGST 312 A +AMDG LD L ++ A +N A +T Sbjct: 683 AQKAMDGKVLDAHTLVVTFARRNAEASTT 711 Score = 42.4 bits (98), Expect = 0.001 Identities = 30/99 (30%), Positives = 49/99 (49%) Frame = -3 Query: 575 GTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 396 G+ K+ NL + ++ F Q L R+ + D +RGFGFV + T+++A++A Sbjct: 717 GSTKILIKNLPFEATKRDIRDLFSSQGQLKSVRLPKKFDN-TTRGFGFVEYSTVREAQSA 775 Query: 395 LQAMDGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQEKT 279 ++A+ L GR L L + A ST Q+ KT Sbjct: 776 MEALKHTHLLGRHLVLQWSHL---ASSTQQQVDMQRSKT 811 Score = 37.7 bits (86), Expect = 0.029 Identities = 27/98 (27%), Positives = 44/98 (44%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 +++ NL + + FE + + ++ T S+G FVSF A AA +A Sbjct: 315 RLFIRNLPFAASGDEILAFFESFGTVKQVHIPLDKQTKASKGLAFVSFSDPAHALAAYRA 374 Query: 386 MDGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQEKTAS 273 DG GR L L PA + + A++ +KTA+ Sbjct: 375 KDGSTFQGRLLHLL------PAVNKDALAETGSKKTAT 406
>PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 46.2 bits (108), Expect = 8e-05 Identities = 35/150 (23%), Positives = 60/150 (40%), Gaps = 29/150 (19%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 +Y G L V L AF + ++ + +T + RGF FV F +DA AA+ M Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67 Query: 383 DGVELDGRPLRLSLA-----------------------------AQNPPAGSTPSXAQSQ 291 + EL GR +R++LA GS P A++Q Sbjct: 68 NESELFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTLEENKEEEGSEPPKAETQ 127 Query: 290 QEKTASRGSEAEPQVXNNTSTSGQFGGEME 201 + + ++ + + PQV + + G ++ Sbjct: 128 EGEPIAKKARSNPQVYMDIKIGNKPAGRIQ 157
>YAG3_SCHPO (Q09868) Hypothetical RNA-binding protein C12G12.03 in chromosome I| Length = 576 Score = 46.2 bits (108), Expect = 8e-05 Identities = 24/62 (38%), Positives = 35/62 (56%) Frame = -3 Query: 461 DTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQEK 282 D G RG F +FH+ ++AK +Q ++G E+ GR LR+ Q PPA + +QEK Sbjct: 268 DNGVFRGLAFANFHSPEEAKTVVQVLNGYEITGRRLRVEWKRQLPPA-ERERVERGKQEK 326 Query: 281 TA 276 A Sbjct: 327 RA 328
>MRD1_SCHPO (O13620) Multiple RNA-binding domain-containing protein 1| Length = 833 Score = 46.2 bits (108), Expect = 8e-05 Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 5/102 (4%) Frame = -3 Query: 572 TYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGR-----SRGFGFVSFHTIQD 408 T +Y NL + + + F+ G + A + + D R S GFGFV F Sbjct: 618 TATIYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKAS 677 Query: 407 AKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQEK 282 A AA+ AM+G LDG L + L+ Q A + S + K Sbjct: 678 AVAAMHAMNGFVLDGHKLEIKLSHQGVDAAAEVRKQDSSKPK 719 Score = 33.9 bits (76), Expect = 0.42 Identities = 19/75 (25%), Positives = 32/75 (42%) Frame = -3 Query: 572 TYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAAL 393 T +++ NL + LK+ F L + ++ T +GF ++ FH DA A Sbjct: 322 TKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAY 381 Query: 392 QAMDGVELDGRPLRL 348 +D GR L + Sbjct: 382 LELDAKPFQGRLLHV 396 Score = 29.6 bits (65), Expect = 7.9 Identities = 15/38 (39%), Positives = 22/38 (57%) Frame = -3 Query: 449 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAA 336 +RGF F F T ++A A++A+ L GR L L A+ Sbjct: 760 ARGFAFAEFVTAREAANAMRALKNTHLLGRHLVLQYAS 797
>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic| poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A) Length = 629 Score = 46.2 bits (108), Expect = 8e-05 Identities = 25/75 (33%), Positives = 43/75 (57%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 VY N G + L+ F + +V+ + D+GRSRGFGFV++ ++A+ A+ M Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVSEM 251 Query: 383 DGVELDGRPLRLSLA 339 +G E++GR + + A Sbjct: 252 NGKEVNGRMIYVGRA 266 Score = 40.0 bits (92), Expect = 0.006 Identities = 25/75 (33%), Positives = 41/75 (54%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 +Y NL G+ L+ F + A+V+ E G S+GFGFV F + ++A A+ M Sbjct: 296 LYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEM 353 Query: 383 DGVELDGRPLRLSLA 339 +G + +PL ++LA Sbjct: 354 NGRIVSTKPLYVALA 368 Score = 38.9 bits (89), Expect = 0.013 Identities = 24/72 (33%), Positives = 36/72 (50%) Frame = -3 Query: 575 GTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 396 G V+ NL + AL F ++ +V+ D SRG+GFV F T + A A Sbjct: 97 GVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVC--DEHGSRGYGFVHFETHEAANRA 154 Query: 395 LQAMDGVELDGR 360 +Q M+G+ L+ R Sbjct: 155 IQTMNGMLLNDR 166
>MYEF2_MOUSE (Q8C854) Myelin expression factor 2 (MyEF-2) (MEF-2)| Length = 591 Score = 46.2 bits (108), Expect = 8e-05 Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 10/139 (7%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 +V+ N+ + ++ A+K + G V +F+ G+SRG G V F + K AL+ Sbjct: 92 RVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALET 151 Query: 386 MDGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQEKTASRGSEAE----------PQVXNN 237 M+ +L GRPL + + P G A Q+ T+ +GS A P + NN Sbjct: 152 MNKYDLSGRPLNI----KEDPDGENARRA-LQRTGTSFQGSHASDVGSGLVNLPPSILNN 206 Query: 236 TSTSGQFGGEMEKSNLQAT 180 + + ++ L +T Sbjct: 207 PNIPPEVISNLQAGRLGST 225 Score = 35.0 bits (79), Expect = 0.19 Identities = 20/75 (26%), Positives = 40/75 (53%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 +++ NL + + LK F ++ A + E G+S+G G V F + + A+ A + Sbjct: 515 QIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMEN--GKSKGCGTVRFESAESAEKACRI 572 Query: 386 MDGVELDGRPLRLSL 342 M+G+++ GR + + L Sbjct: 573 MNGIKISGREIDVRL 587 Score = 33.9 bits (76), Expect = 0.42 Identities = 24/80 (30%), Positives = 37/80 (46%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 ++ NL + V LK F G V I E G+SRG G V+F +A A+ Sbjct: 226 IFVANLDFKVGWKKLKEVFS-IAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMF 284 Query: 383 DGVELDGRPLRLSLAAQNPP 324 +G L RP+ + + ++ P Sbjct: 285 NGQFLFDRPMHVKMDDKSVP 304
>MRD1_CRYNE (Q5KJL5) Multiple RNA-binding domain-containing protein 1| Length = 769 Score = 45.8 bits (107), Expect = 1e-04 Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 5/114 (4%) Frame = -3 Query: 581 DDGTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGR-----SRGFGFVSFHT 417 D+ ++ L + L+T PG ARV + D R S G+GFV F T Sbjct: 531 DEAGSTLFLKGLNFTTTTPHLQTVLSHIPGFSFARVQMKPDPKRPGEKLSMGYGFVGFKT 590 Query: 416 IQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQEKTASRGSEAE 255 + A AL+A++G E+DG+ L + A + ++ ++ +G +AE Sbjct: 591 KEAATKALKALEGFEIDGKSLEVKFAQRG-----------AEDDRETKKGGDAE 633 Score = 35.4 bits (80), Expect = 0.14 Identities = 20/75 (26%), Positives = 35/75 (46%) Frame = -3 Query: 572 TYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAAL 393 T +++ NL + + +L + F + + + TG G F+ FH +DA AA Sbjct: 220 TSRLFVRNLAFITTSESLSSHFSTYGRIDECHLPVSQTTGEPLGTAFLQFHNAEDALAAY 279 Query: 392 QAMDGVELDGRPLRL 348 +A+D GR L + Sbjct: 280 KALDKTIFQGRLLHV 294
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 45.8 bits (107), Expect = 1e-04 Identities = 27/75 (36%), Positives = 43/75 (57%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 VY N G + LK F G+ G + + ++G+S+GFGFVSF +DA+ A+ M Sbjct: 193 VYIKNFGEDMDDERLKDLF-GKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251 Query: 383 DGVELDGRPLRLSLA 339 +G EL+G+ + + A Sbjct: 252 NGKELNGKQIYVGRA 266 Score = 44.3 bits (103), Expect = 3e-04 Identities = 27/75 (36%), Positives = 43/75 (57%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 +Y NL G+ L+ AF + A+V+ E GRS+GFGFV F + ++A A+ M Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 353 Query: 383 DGVELDGRPLRLSLA 339 +G + +PL ++LA Sbjct: 354 NGRIVATKPLYVALA 368 Score = 37.0 bits (84), Expect = 0.049 Identities = 21/72 (29%), Positives = 36/72 (50%) Frame = -3 Query: 575 GTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 396 G ++ NL + AL ++ V+ D S+G+GFV F T + A+ A Sbjct: 97 GVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVC--DENGSKGYGFVHFETHEAAERA 154 Query: 395 LQAMDGVELDGR 360 ++ M+G+ L+GR Sbjct: 155 IKKMNGMLLNGR 166
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 45.8 bits (107), Expect = 1e-04 Identities = 27/75 (36%), Positives = 43/75 (57%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 VY N G + LK F G+ G + + ++G+S+GFGFVSF +DA+ A+ M Sbjct: 193 VYIKNFGEDMDDERLKELF-GKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251 Query: 383 DGVELDGRPLRLSLA 339 +G EL+G+ + + A Sbjct: 252 NGKELNGKQIYVGRA 266 Score = 42.4 bits (98), Expect = 0.001 Identities = 26/75 (34%), Positives = 42/75 (56%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 +Y NL G+ L+ F + A+V+ E GRS+GFGFV F + ++A A+ M Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 353 Query: 383 DGVELDGRPLRLSLA 339 +G + +PL ++LA Sbjct: 354 NGRIVATKPLYVALA 368 Score = 37.0 bits (84), Expect = 0.049 Identities = 21/72 (29%), Positives = 37/72 (51%) Frame = -3 Query: 575 GTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 396 G ++ NL + AL F ++ +V+ D S+G+GFV F T + A+ A Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYGFVHFETQEAAERA 154 Query: 395 LQAMDGVELDGR 360 ++ M+G+ L+ R Sbjct: 155 IEKMNGMLLNDR 166
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 45.8 bits (107), Expect = 1e-04 Identities = 27/75 (36%), Positives = 43/75 (57%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 VY N G + LK F G+ G + + ++G+S+GFGFVSF +DA+ A+ M Sbjct: 193 VYIKNFGEDMDDERLKELF-GKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251 Query: 383 DGVELDGRPLRLSLA 339 +G EL+G+ + + A Sbjct: 252 NGKELNGKQIYVGRA 266 Score = 42.4 bits (98), Expect = 0.001 Identities = 26/75 (34%), Positives = 42/75 (56%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 +Y NL G+ L+ F + A+V+ E GRS+GFGFV F + ++A A+ M Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 353 Query: 383 DGVELDGRPLRLSLA 339 +G + +PL ++LA Sbjct: 354 NGRIVATKPLYVALA 368 Score = 37.7 bits (86), Expect = 0.029 Identities = 27/107 (25%), Positives = 50/107 (46%) Frame = -3 Query: 575 GTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 396 G ++ NL + AL F ++ +V+ D S+G+GFV F T + A+ A Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYGFVHFETQEAAERA 154 Query: 395 LQAMDGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQEKTASRGSEAE 255 ++ M+G+ L+ R + + +SQ+E+ A G+ A+ Sbjct: 155 IEKMNGMLLNDRKVFV-------------GRFKSQKEREAELGARAK 188
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 45.8 bits (107), Expect = 1e-04 Identities = 27/75 (36%), Positives = 43/75 (57%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 VY N G + LK F G+ G + + ++G+S+GFGFVSF +DA+ A+ M Sbjct: 193 VYIKNFGEDMDDERLKDLF-GKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251 Query: 383 DGVELDGRPLRLSLA 339 +G EL+G+ + + A Sbjct: 252 NGKELNGKQIYVGRA 266 Score = 42.4 bits (98), Expect = 0.001 Identities = 26/75 (34%), Positives = 42/75 (56%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 +Y NL G+ L+ F + A+V+ E GRS+GFGFV F + ++A A+ M Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 353 Query: 383 DGVELDGRPLRLSLA 339 +G + +PL ++LA Sbjct: 354 NGRIVATKPLYVALA 368 Score = 37.0 bits (84), Expect = 0.049 Identities = 21/72 (29%), Positives = 37/72 (51%) Frame = -3 Query: 575 GTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 396 G ++ NL + AL F ++ +V+ D S+G+GFV F T + A+ A Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYGFVHFETQEAAERA 154 Query: 395 LQAMDGVELDGR 360 ++ M+G+ L+ R Sbjct: 155 IEKMNGMLLNDR 166
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 45.8 bits (107), Expect = 1e-04 Identities = 27/75 (36%), Positives = 43/75 (57%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 VY N G + LK F G+ G + + ++G+S+GFGFVSF +DA+ A+ M Sbjct: 193 VYIKNFGEDMDDERLKDLF-GKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251 Query: 383 DGVELDGRPLRLSLA 339 +G EL+G+ + + A Sbjct: 252 NGKELNGKQIYVGRA 266 Score = 42.4 bits (98), Expect = 0.001 Identities = 26/75 (34%), Positives = 42/75 (56%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 +Y NL G+ L+ F + A+V+ E GRS+GFGFV F + ++A A+ M Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 353 Query: 383 DGVELDGRPLRLSLA 339 +G + +PL ++LA Sbjct: 354 NGRIVATKPLYVALA 368 Score = 37.0 bits (84), Expect = 0.049 Identities = 21/72 (29%), Positives = 37/72 (51%) Frame = -3 Query: 575 GTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 396 G ++ NL + AL F ++ +V+ D S+G+GFV F T + A+ A Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYGFVHFETQEAAERA 154 Query: 395 LQAMDGVELDGR 360 ++ M+G+ L+ R Sbjct: 155 IEKMNGMLLNDR 166
>TRA2_DROME (P19018) Transformer-2 sex-determining protein| Length = 264 Score = 45.8 bits (107), Expect = 1e-04 Identities = 21/66 (31%), Positives = 36/66 (54%) Frame = -3 Query: 479 RVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSXA 300 +++ + T RSRGF F+ F + DA+AA + G+E+DGR +R+ + TP Sbjct: 127 QMVIDAQTQRSRGFCFIYFEKLSDARAAKDSCSGIEVDGRRIRVDFSITQRAHTPTPGVY 186 Query: 299 QSQQEK 282 +Q + Sbjct: 187 LGRQPR 192
>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)| (CeSF2/ASF) Length = 258 Score = 45.8 bits (107), Expect = 1e-04 Identities = 29/83 (34%), Positives = 39/83 (46%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 KVY GNL VR ++ F G + +GR F FV F +DA+ A++A Sbjct: 10 KVYVGNLPGDVREKEVEDIFHKY----GRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRA 65 Query: 386 MDGVELDGRPLRLSLAAQNPPAG 318 DG E DGR +R+ P G Sbjct: 66 RDGYEFDGRRIRVEFTRGVGPRG 88
>CSX1_SCHPO (O13759) RNA-binding post-transcriptional regulator csx1| Length = 632 Score = 45.8 bits (107), Expect = 1e-04 Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 1/94 (1%) Frame = -3 Query: 578 DGTYKVYAGNLGWGVRAXALKTAFEG-QPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 402 D + ++ G+L L F P A++I + TG SR +GFV F + ++ + Sbjct: 179 DPEFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQ 238 Query: 401 AALQAMDGVELDGRPLRLSLAAQNPPAGSTPSXA 300 AL M G GRPLR+S+A+ A A Sbjct: 239 HALMHMQGYLCQGRPLRISVASPKSRASIAADSA 272
>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member| A1 (RNA-binding motif protein 1) Length = 496 Score = 45.8 bits (107), Expect = 1e-04 Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 10/110 (9%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 K++ G L LK F G+ G + ++ + T +SRGF F++F DAK A + Sbjct: 9 KLFIGGLNRETNEKMLKAVF-GKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKD 67 Query: 386 MDGVELDGRPLRLSLA---------AQNPPAGS-TPSXAQSQQEKTASRG 267 M+G L G+ +++ A + PPA S S + S + SRG Sbjct: 68 MNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRG 117
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein| 1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A) (PABP 1-A) (xPABP1-A) Length = 633 Score = 45.4 bits (106), Expect = 1e-04 Identities = 25/70 (35%), Positives = 40/70 (57%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 VY N G + LK F G+ G + + D G+S+GFGFVSF +DA+ A+ M Sbjct: 193 VYIKNFGDDMNDERLKEMF-GKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEM 251 Query: 383 DGVELDGRPL 354 +G +++G+ + Sbjct: 252 NGKDMNGKSM 261 Score = 41.2 bits (95), Expect = 0.003 Identities = 26/75 (34%), Positives = 42/75 (56%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 +Y NL G+ L+ F + A+V+ E GRS+GFGFV F + ++A A+ M Sbjct: 296 LYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 353 Query: 383 DGVELDGRPLRLSLA 339 +G + +PL ++LA Sbjct: 354 NGRIVATKPLYVALA 368 Score = 36.2 bits (82), Expect = 0.084 Identities = 21/72 (29%), Positives = 36/72 (50%) Frame = -3 Query: 575 GTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 396 G ++ NL + AL F ++ +V+ D S+G+GFV F T + A+ A Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYGFVHFETQEAAERA 154 Query: 395 LQAMDGVELDGR 360 + M+G+ L+ R Sbjct: 155 IDKMNGMLLNDR 166
>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) (Proline-rich Vg1 mRNA-binding protein) Length = 360 Score = 45.1 bits (105), Expect = 2e-04 Identities = 31/119 (26%), Positives = 50/119 (42%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 K++ G L W L++ F +V ++ ++ T +SRGFGFV F + + A Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD-PNCVGTVLA 69 Query: 386 MDGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQEKTASRGSEAEPQVXNNTSTSGQFGG 210 LDGR + P TP Q ++ + + EP+ N+ S GG Sbjct: 70 SRPHTLDGRNI--------DPKPCTPRGMQPERSRPREGWQQKEPRTENSRSNKIFVGG 120 Score = 34.7 bits (78), Expect = 0.25 Identities = 28/123 (22%), Positives = 48/123 (39%), Gaps = 6/123 (4%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 K++ G + LK F + +I++ + R RGFGF++F Q A+ Sbjct: 115 KIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN- 173 Query: 386 MDGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQ------EKTASRGSEAEPQVXNNTSTS 225 M ++ G+ + + A TP S Q + TA+ + PQ S Sbjct: 174 MHFHDIMGKKVEVKRAEPRDSKSQTPGPPGSNQWGSRAMQSTANGWTGQPPQTWQGYSPQ 233 Query: 224 GQF 216 G + Sbjct: 234 GMW 236
>RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15| Length = 296 Score = 45.1 bits (105), Expect = 2e-04 Identities = 25/116 (21%), Positives = 55/116 (47%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 VY G++ + + ++ +++F+ TGRS+G+ F+ F ++ + +A++ + Sbjct: 20 VYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNL 79 Query: 383 DGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQEKTASRGSEAEPQVXNNTSTSGQF 216 +G +L R L+ ++ + +G + Q QQ+ G+ NN S F Sbjct: 80 NGYQLGSRFLKCGYSSNSDISGVS---QQQQQQYNNINGNNNNNGNNNNNSNGPDF 132
>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1| Length = 828 Score = 45.1 bits (105), Expect = 2e-04 Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 5/80 (6%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGR-----SRGFGFVSFHTIQDAKA 399 V+ NL + + L AF+ G + A+V + D+ S GFGFV F + + A+ Sbjct: 607 VFVKNLNFKTTSRVLTDAFKALDGFLVAQVKMKPDSKNKGKFLSMGFGFVEFSSKEAAEI 666 Query: 398 ALQAMDGVELDGRPLRLSLA 339 A +AMDG LDG L+L ++ Sbjct: 667 AQKAMDGHVLDGHKLQLKIS 686 Score = 33.1 bits (74), Expect = 0.71 Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 1/85 (1%) Frame = -3 Query: 449 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA-AQNPPAGSTPSXAQSQQEKTAS 273 SRGF F + + ++A+ A+ A+ G L GR L L A A A Q+ K A+ Sbjct: 742 SRGFAFAEYVSAKEAEHAMSALQGTHLLGRRLVLQYAQADASNAEEEIERMQATVSKQAA 801 Query: 272 RGSEAEPQVXNNTSTSGQFGGEMEK 198 + S A+ ++ GE E+ Sbjct: 802 QRSFADMKLAGEGKRRVDLEGEDEE 826 Score = 32.3 bits (72), Expect = 1.2 Identities = 20/75 (26%), Positives = 33/75 (44%) Frame = -3 Query: 572 TYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAAL 393 T +++ NL + + + F L + TG+ +GF V F ++A AA Sbjct: 300 TGRLFLRNLLYTAKEEDFRQLFSQYGELEEVHLPINTKTGQCKGFAHVQFEDPENAIAAY 359 Query: 392 QAMDGVELDGRPLRL 348 +A DG GR L + Sbjct: 360 EAQDGKIFQGRLLHI 374
>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage| factor IB) (CFIB) Length = 534 Score = 44.7 bits (104), Expect = 2e-04 Identities = 31/124 (25%), Positives = 55/124 (44%) Frame = -3 Query: 578 DGTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKA 399 D T K++ G +G VR + F ++ A+++ ++DTG+SRGFGFV T A A Sbjct: 240 DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFV---TYDSADA 296 Query: 398 ALQAMDGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQEKTASRGSEAEPQVXNNTSTSGQ 219 + +D + ++ + P + Q+K+++ G N G Sbjct: 297 VDRVCQNKFIDFKDRKIEIKRAEP---------RHMQQKSSNNGGNNGGN--NMNRRGGN 345 Query: 218 FGGE 207 FG + Sbjct: 346 FGNQ 349 Score = 38.1 bits (87), Expect = 0.022 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 3/70 (4%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFH---TIQDAKAA 396 K++ G L W L+ F + +++ + TGRSRGFGF+SF ++ + Sbjct: 160 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT 219 Query: 395 LQAMDGVELD 366 +DG +D Sbjct: 220 QHILDGKVID 229
>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic| poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B) Length = 629 Score = 44.7 bits (104), Expect = 2e-04 Identities = 24/68 (35%), Positives = 40/68 (58%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 VY N G + LK F + +V+ + ++GRSRGFGFV++ ++A+ A+ M Sbjct: 193 VYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMD-NSGRSRGFGFVNYGNHEEAQKAVTEM 251 Query: 383 DGVELDGR 360 +G E++GR Sbjct: 252 NGKEVNGR 259 Score = 39.7 bits (91), Expect = 0.008 Identities = 24/75 (32%), Positives = 40/75 (53%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 +Y NL G+ L+ F + +V+ E G S+GFGFV F + ++A A+ M Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEG--GHSKGFGFVCFSSPEEATKAVTEM 353 Query: 383 DGVELDGRPLRLSLA 339 +G + +PL ++LA Sbjct: 354 NGRIVSTKPLYVALA 368 Score = 37.7 bits (86), Expect = 0.029 Identities = 24/72 (33%), Positives = 36/72 (50%) Frame = -3 Query: 575 GTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 396 G V+ NL + AL F ++ +V+ D SRG+GFV F T + A A Sbjct: 97 GVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVC--DEYGSRGYGFVHFETQEAANRA 154 Query: 395 LQAMDGVELDGR 360 +Q M+G+ L+ R Sbjct: 155 IQTMNGMLLNDR 166
>MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing protein 1| Length = 825 Score = 44.7 bits (104), Expect = 2e-04 Identities = 29/78 (37%), Positives = 37/78 (47%), Gaps = 5/78 (6%) Frame = -3 Query: 572 TYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGR-----SRGFGFVSFHTIQD 408 T ++ NL + F+ G V AR+ + D R S GFGFV F T Sbjct: 596 TSTLFVKNLNFSTTNERFTEVFKPLDGFVSARIKTKPDPKRPGKTLSMGFGFVDFRTKAQ 655 Query: 407 AKAALQAMDGVELDGRPL 354 A+AAL AMDG +LD L Sbjct: 656 AQAALAAMDGYKLDQHEL 673 Score = 32.0 bits (71), Expect = 1.6 Identities = 23/76 (30%), Positives = 36/76 (47%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 K+ NL + +++ F L RV + D +RGFGF F + ++A+ A+ A Sbjct: 703 KIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRS-ARGFGFADFVSAREAENAMDA 761 Query: 386 MDGVELDGRPLRLSLA 339 + L GR L L A Sbjct: 762 LKNTHLLGRRLVLEFA 777
>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA| binding protein SEB4) (CLL-associated antigen KW-5) Length = 216 Score = 44.7 bits (104), Expect = 2e-04 Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 2/78 (2%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 K++ G L + +L+ FEG + A VI +R TG+SRG+GFV T+ D AA +A Sbjct: 12 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFV---TMADRAAAERA 68 Query: 386 MDGVE--LDGRPLRLSLA 339 +DGR ++LA Sbjct: 69 CKDPNPIIDGRKANVNLA 86
>RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ssDNA binding| protein SEB4) Length = 237 Score = 44.3 bits (103), Expect = 3e-04 Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 2/78 (2%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 K++ G L + +L+ FEG + A VI +R TG+SRG+GFV T+ D AA +A Sbjct: 33 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFV---TMADRAAADRA 89 Query: 386 MDGVE--LDGRPLRLSLA 339 +DGR ++LA Sbjct: 90 CKDPNPIIDGRKANVNLA 107
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 634 Score = 43.9 bits (102), Expect = 4e-04 Identities = 24/75 (32%), Positives = 42/75 (56%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 +Y NL + L+ AF + A+V+ + + GRS+GFGFV F+ +A A+ + Sbjct: 289 LYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEE-GRSKGFGFVCFNAASEATCAVTEL 347 Query: 383 DGVELDGRPLRLSLA 339 +G + +PL ++LA Sbjct: 348 NGRVVGSKPLYVALA 362 Score = 43.9 bits (102), Expect = 4e-04 Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 1/76 (1%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 VY N LK FE + +V+ + D G+S+GFGFV+F T + A+AA+QA+ Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKED-GKSKGFGFVAFETTEAAEAAVQAL 243 Query: 383 DGVEL-DGRPLRLSLA 339 +G ++ +G+ L ++ A Sbjct: 244 NGKDMGEGKSLYVARA 259 Score = 35.8 bits (81), Expect = 0.11 Identities = 19/72 (26%), Positives = 37/72 (51%) Frame = -3 Query: 575 GTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 396 G V+ NL + A+ F ++ +V + + G S+G+GFV F T + A + Sbjct: 88 GVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATD-EKGNSKGYGFVHFETEEAANTS 146 Query: 395 LQAMDGVELDGR 360 + ++G+ L+G+ Sbjct: 147 IDKVNGMLLNGK 158
>FOX1_CAEEL (Q10572) Sex determination protein fox-1 (Feminizing locus on X| protein 1) Length = 415 Score = 43.9 bits (102), Expect = 4e-04 Identities = 28/80 (35%), Positives = 45/80 (56%) Frame = -3 Query: 578 DGTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKA 399 DG +++ N+ + R LKT FE + G+V I + G S+GFGFV+ QDA+ Sbjct: 150 DGPKRLHVSNIPFRFRDPDLKTMFE-KFGVVSDVEIIFNERG-SKGFGFVTMERPQDAER 207 Query: 398 ALQAMDGVELDGRPLRLSLA 339 A Q + G ++GR + ++ A Sbjct: 208 ARQELHGSMIEGRKIEVNCA 227
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 43.5 bits (101), Expect = 5e-04 Identities = 25/76 (32%), Positives = 43/76 (56%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 VY G L V L F +V + +R TG+ +G+GFV F + +DA A++ M Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74 Query: 383 DGVELDGRPLRLSLAA 336 + ++L G+P+R++ A+ Sbjct: 75 NMIKLYGKPIRVNKAS 90 Score = 42.0 bits (97), Expect = 0.002 Identities = 19/60 (31%), Positives = 35/60 (58%) Frame = -3 Query: 479 RVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSXA 300 +++ + DTG S+G+ F++F + + AA++AM+G L RP+ +S A + G A Sbjct: 131 KIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSA 190
>RAVR1_RAT (Q5XI28) Protein raver-1| Length = 748 Score = 43.5 bits (101), Expect = 5e-04 Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 5/82 (6%) Frame = -3 Query: 455 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQEKTA 276 G+ +GF + + T + A+AA Q DG+ L G LR+S A PP S + + Q Sbjct: 259 GQLKGFAVLEYETAEMAEAAQQRADGLALGGSHLRVSFCAPGPPGRSMLAALIAAQATAL 318 Query: 275 SRGSEAEP-----QVXNNTSTS 225 +RG P Q+ NN S Sbjct: 319 NRGKGLLPEPNILQLLNNLGPS 340
>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) Length = 371 Score = 43.1 bits (100), Expect = 7e-04 Identities = 24/69 (34%), Positives = 41/69 (59%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 K++ G L + +L++ FE L V+ + +T RSRGFGFV++ T+++ AA+ A Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 73 Query: 386 MDGVELDGR 360 ++DGR Sbjct: 74 RPH-KVDGR 81
>EWS_MOUSE (Q61545) RNA-binding protein EWS| Length = 655 Score = 43.1 bits (100), Expect = 7e-04 Identities = 22/63 (34%), Positives = 36/63 (57%) Frame = -3 Query: 503 GQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPP 324 GQP + + +++TG+ +G VS+ AKAA++ DG + G L++SLA + PP Sbjct: 393 GQPMI---HIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPP 449 Query: 323 AGS 315 S Sbjct: 450 MNS 452
>EWS_HUMAN (Q01844) RNA-binding protein EWS (EWS oncogene) (Ewing sarcoma| breakpoint region 1 protein) Length = 656 Score = 43.1 bits (100), Expect = 7e-04 Identities = 22/63 (34%), Positives = 36/63 (57%) Frame = -3 Query: 503 GQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPP 324 GQP + + +++TG+ +G VS+ AKAA++ DG + G L++SLA + PP Sbjct: 394 GQPMI---HIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPP 450 Query: 323 AGS 315 S Sbjct: 451 MNS 453
>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein| 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 43.1 bits (100), Expect = 7e-04 Identities = 25/68 (36%), Positives = 37/68 (54%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 VY N G V +LK F Q G + + G+S+GFGFVS+ +DA A++ M Sbjct: 193 VYIKNFGEEVDDESLKELFS-QFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEM 251 Query: 383 DGVELDGR 360 +G E+ G+ Sbjct: 252 NGKEISGK 259 Score = 41.2 bits (95), Expect = 0.003 Identities = 25/75 (33%), Positives = 41/75 (54%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 +Y NL + L+ F + A+V+ E GRS+GFGFV F + ++A A+ M Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353 Query: 383 DGVELDGRPLRLSLA 339 +G + +PL ++LA Sbjct: 354 NGRIVGSKPLYVALA 368 Score = 34.3 bits (77), Expect = 0.32 Identities = 21/72 (29%), Positives = 35/72 (48%) Frame = -3 Query: 575 GTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 396 G V+ NL + AL F ++ +V+ D S+G+ FV F T + A A Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYAFVHFETQEAADKA 154 Query: 395 LQAMDGVELDGR 360 ++ M+G+ L+ R Sbjct: 155 IEKMNGMLLNDR 166
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 43.1 bits (100), Expect = 7e-04 Identities = 23/79 (29%), Positives = 39/79 (49%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 +Y G L V L F + RV + T RS G+ +V+FH ++D + AL + Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141 Query: 383 DGVELDGRPLRLSLAAQNP 327 + + GRP R+ + ++P Sbjct: 142 NYTLIKGRPCRIMWSQRDP 160 Score = 39.7 bits (91), Expect = 0.008 Identities = 24/75 (32%), Positives = 42/75 (56%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 ++ NL V LK F + A+++ + + G+S+GFGFV + T ++A A+ M Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAVTEM 424 Query: 383 DGVELDGRPLRLSLA 339 + L G+PL ++LA Sbjct: 425 NQRMLAGKPLYVALA 439 Score = 30.0 bits (66), Expect = 6.0 Identities = 20/75 (26%), Positives = 35/75 (46%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 VY NL + F GQ G + + + + + RGFGFV++ + A+ A+ + Sbjct: 263 VYIKNLDTEITEQEFSDLF-GQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDEL 321 Query: 383 DGVELDGRPLRLSLA 339 + E G+ L + A Sbjct: 322 NDKEYKGKKLYVGRA 336
>YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c in chromosome| II Length = 473 Score = 43.1 bits (100), Expect = 7e-04 Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 1/84 (1%) Frame = -3 Query: 569 YKVYAGNLGWGVRAXALKTAFEGQ-PGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAAL 393 Y ++ G+L V + + F + A+++ + T SRG+GFV F D K+AL Sbjct: 186 YSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSAL 245 Query: 392 QAMDGVELDGRPLRLSLAAQNPPA 321 M G RP+R+ LA A Sbjct: 246 AEMQGQICGDRPIRVGLATPKSKA 269 Score = 34.3 bits (77), Expect = 0.32 Identities = 27/101 (26%), Positives = 39/101 (38%) Frame = -3 Query: 581 DDGTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 402 D V+ G L V LK F+ +V ++ +G GFV F Q A+ Sbjct: 299 DTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKI------PPGKGCGFVQFVNRQSAE 352 Query: 401 AALQAMDGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQEKT 279 A+ + G L +RLS P + QSQ +T Sbjct: 353 IAINQLQGYPLGNSRIRLSWGRNQNPIAAPALNYQSQVSQT 393
>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (HDP) Length = 319 Score = 43.1 bits (100), Expect = 7e-04 Identities = 24/69 (34%), Positives = 41/69 (59%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 K++ G L + +L++ FE L V+ + +T RSRGFGFV++ T+++ AA+ A Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 73 Query: 386 MDGVELDGR 360 ++DGR Sbjct: 74 RPH-KVDGR 81
>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed) Length = 319 Score = 43.1 bits (100), Expect = 7e-04 Identities = 24/69 (34%), Positives = 41/69 (59%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 K++ G L + +L++ FE L V+ + +T RSRGFGFV++ T+++ AA+ A Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 73 Query: 386 MDGVELDGR 360 ++DGR Sbjct: 74 RPH-KVDGR 81
>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (Unwinding protein 1) (UP1) (Fragment) Length = 195 Score = 43.1 bits (100), Expect = 7e-04 Identities = 24/69 (34%), Positives = 41/69 (59%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 K++ G L + +L++ FE L V+ + +T RSRGFGFV++ T+++ AA+ A Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 73 Query: 386 MDGVELDGR 360 ++DGR Sbjct: 74 RPH-KVDGR 81
>PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 300 Score = 43.1 bits (100), Expect = 7e-04 Identities = 24/75 (32%), Positives = 39/75 (52%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 +Y G L V L AF + ++ + ++ R RGF F+ + +DA AA+ M Sbjct: 8 IYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAAAAIDNM 67 Query: 383 DGVELDGRPLRLSLA 339 + EL GR +R++LA Sbjct: 68 NDSELCGRTIRVNLA 82
>RSD1_SCHPO (O13845) RNA-binding protein rsd1| Length = 604 Score = 43.1 bits (100), Expect = 7e-04 Identities = 26/94 (27%), Positives = 47/94 (50%) Frame = -3 Query: 461 DTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQEK 282 D RS+GFG++ + A+ AL+ M+G +L GR +R+ L + T S + ++ Sbjct: 375 DQNRSKGFGYIQYRNPISARNALEKMNGFDLAGRNMRVCL-GNDKFTTETTSSMLKRFDE 433 Query: 281 TASRGSEAEPQVXNNTSTSGQFGGEMEKSNLQAT 180 T +R ++P N S++ + E + L T Sbjct: 434 TLARQERSQPSQRNGGSSTYESQDYREAAPLSPT 467 Score = 29.6 bits (65), Expect = 7.9 Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 2/92 (2%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 V+ L + + L FE + A+++ ++ +GRS+G +V F +AA+ A+ Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAI-AL 300 Query: 383 DGVELDGRP--LRLSLAAQNPPAGSTPSXAQS 294 G L G P ++L+ A +N A A++ Sbjct: 301 SGKRLLGLPVIVQLTEAEKNRKAREAAELARA 332
>SAFB1_RAT (O88453) Scaffold attachment factor B (Scaffold attachment factor| B1) (SAF-B) Length = 931 Score = 42.7 bits (99), Expect = 0.001 Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 2/103 (1%) Frame = -3 Query: 560 YAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMD 381 + L RA LK F +VGA+V+ + +R +GFV+ T ++A + + Sbjct: 431 WVSGLSSTTRATDLKNLFSRYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLH 490 Query: 380 GVELDGRPLRLSLAAQNPPAGSTPS--XAQSQQEKTASRGSEA 258 EL G+ + + A P P S++EKT++ A Sbjct: 491 KTELHGKMISVEKAKSEPAGKRVPDRRDGDSKKEKTSTSDRSA 533
>SAFB1_HUMAN (Q15424) Scaffold attachment factor B (Scaffold attachment factor| B1) (SAF-B) (HSP27 estrogen response element-TATA box-binding protein) (HSP27 ERE-TATA-binding protein) Length = 915 Score = 42.7 bits (99), Expect = 0.001 Identities = 26/100 (26%), Positives = 43/100 (43%) Frame = -3 Query: 560 YAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMD 381 + L RA LK F +VGA+V+ + +R +GFV+ T ++A + + Sbjct: 409 WVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLH 468 Query: 380 GVELDGRPLRLSLAAQNPPAGSTPSXAQSQQEKTASRGSE 261 EL G+ + + A P T S +K S S+ Sbjct: 469 KTELHGKMISVEKAKNEPVGKKTSDKRDSDGKKEKSSNSD 508
>MYEF2_HUMAN (Q9P2K5) Myelin expression factor 2 (MyEF-2) (MST156)| Length = 600 Score = 42.7 bits (99), Expect = 0.001 Identities = 23/73 (31%), Positives = 39/73 (53%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 +V+ N+ + ++ A+K + G V +F+ G+SRG G V F + K AL+ Sbjct: 101 RVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALET 160 Query: 386 MDGVELDGRPLRL 348 M+ +L GRPL + Sbjct: 161 MNKYDLSGRPLNI 173 Score = 33.9 bits (76), Expect = 0.42 Identities = 20/75 (26%), Positives = 40/75 (53%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 +++ NL + + LK F ++ A + E G+S+G G V F + + A+ A + Sbjct: 524 QIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMEN--GKSKGCGTVRFDSPESAEKACRI 581 Query: 386 MDGVELDGRPLRLSL 342 M+G+++ GR + + L Sbjct: 582 MNGIKISGREIDVRL 596 Score = 33.9 bits (76), Expect = 0.42 Identities = 24/80 (30%), Positives = 37/80 (46%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 ++ NL + V LK F G V I E G+SRG G V+F +A A+ Sbjct: 235 IFVANLDFKVGWKKLKEVFS-IAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMF 293 Query: 383 DGVELDGRPLRLSLAAQNPP 324 +G L RP+ + + ++ P Sbjct: 294 NGQFLFDRPMHVKMDDKSVP 313
>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (APOBEC-1-binding protein 1) (ABBP-1) Length = 331 Score = 42.4 bits (98), Expect = 0.001 Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 2/71 (2%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 K++ G L W LK F +V + + +TGRSRGFGF+ F +DA + + Sbjct: 69 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILF---KDAASVEKV 125 Query: 386 MDGVE--LDGR 360 +D E LDGR Sbjct: 126 LDQKEHRLDGR 136
>ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 319 Score = 42.0 bits (97), Expect = 0.002 Identities = 24/69 (34%), Positives = 40/69 (57%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 K++ G L + +L++ FE L V+ + +T RSRGFGFV++ T++ AA+ A Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMNA 73 Query: 386 MDGVELDGR 360 ++DGR Sbjct: 74 RPH-KVDGR 81
>RAVR1_HUMAN (Q8IY67) Protein raver-1| Length = 606 Score = 42.0 bits (97), Expect = 0.002 Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 5/82 (6%) Frame = -3 Query: 455 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQEKTA 276 G+ +GF + + T + A+ A Q DG+ L G LR+S A PP S + + Q Sbjct: 259 GQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPPGRSMLAALIAAQATAL 318 Query: 275 SRGSEAEP-----QVXNNTSTS 225 +RG P Q+ NN S Sbjct: 319 NRGKGLLPEPNILQLLNNLGPS 340
>RBM14_MOUSE (Q8C2Q3) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 42.0 bits (97), Expect = 0.002 Identities = 25/115 (21%), Positives = 51/115 (44%) Frame = -3 Query: 572 TYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAAL 393 T+K++ GN+ + L++ FE + ++ V+ + + FV DAKAA+ Sbjct: 78 TWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEADAKAAI 129 Query: 392 QAMDGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQEKTASRGSEAEPQVXNNTST 228 ++G E+ G+ + + L+ + G + + K G A P ++T Sbjct: 130 AQLNGKEVKGKRINVELSTKGQKKGPALAIQSGDKTKKPGAGDTAFPGTGGFSAT 184
>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 430 Score = 42.0 bits (97), Expect = 0.002 Identities = 23/72 (31%), Positives = 39/72 (54%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 V+ GNL + V A++ F ++ R++ ++ TG +GFG+V F AL+ + Sbjct: 289 VFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALK-L 347 Query: 383 DGVELDGRPLRL 348 + EL GR LR+ Sbjct: 348 NNSELMGRKLRV 359
>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) Length = 660 Score = 41.6 bits (96), Expect = 0.002 Identities = 22/65 (33%), Positives = 37/65 (56%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 VY NL + L+ F G+ G++ + V+ +G SR FGFV+F + A +A++ M Sbjct: 231 VYVKNLPKEIGEDELRKTF-GKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKM 289 Query: 383 DGVEL 369 +G+ L Sbjct: 290 NGISL 294 Score = 40.8 bits (94), Expect = 0.003 Identities = 25/75 (33%), Positives = 39/75 (52%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 +Y NL V LK F + ++V+ G SRGFGFV++ ++A AL M Sbjct: 334 LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRALSEM 392 Query: 383 DGVELDGRPLRLSLA 339 +G + +PL ++LA Sbjct: 393 NGKMIGRKPLYIALA 407 Score = 36.6 bits (83), Expect = 0.065 Identities = 20/72 (27%), Positives = 38/72 (52%) Frame = -3 Query: 575 GTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 396 G ++ NL + AL F ++ +V + TGRS+G+GFV F + A+AA Sbjct: 134 GKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAA 192 Query: 395 LQAMDGVELDGR 360 + ++G+ ++ + Sbjct: 193 IDKLNGMLMNDK 204
>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (CArG-binding factor-A) (CBF-A) Length = 285 Score = 41.6 bits (96), Expect = 0.002 Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 2/71 (2%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 K++ G L W LK F +V + + +TGRSRGFGF+ F +D+ + + Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILF---KDSSSVEKV 132 Query: 386 MDGVE--LDGR 360 +D E LDGR Sbjct: 133 LDQKEHRLDGR 143
>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 758 Score = 41.6 bits (96), Expect = 0.002 Identities = 30/91 (32%), Positives = 43/91 (47%) Frame = -3 Query: 551 NLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVE 372 NL + LKT F Q G V I + G+ RGFGFV F + +A AL+ M+ E Sbjct: 119 NLSFKCSEDDLKTVF-AQFGAVLEVNIPRKPDGKMRGFGFVQFKNLLEAGKALKGMNMKE 177 Query: 371 LDGRPLRLSLAAQNPPAGSTPSXAQSQQEKT 279 + GR + + A T S + +EK+ Sbjct: 178 IKGRTVAVDWAVAKDKYKDTQSVSAIGEEKS 208 Score = 33.1 bits (74), Expect = 0.71 Identities = 22/106 (20%), Positives = 47/106 (44%), Gaps = 3/106 (2%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQ-- 390 ++ G L R+ L+ F + V+ E+ + RGFG+V+F ++D + AL+ Sbjct: 5 LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 64 Query: 389 -AMDGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQEKTASRGSEAE 255 +G +++ + L + G + ++E A + A+ Sbjct: 65 TTFEGCKINVTVAKKKLRNKTKEKGKNENSECPKKEPKAKKAKVAD 110
>RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 428 Score = 41.2 bits (95), Expect = 0.003 Identities = 32/115 (27%), Positives = 48/115 (41%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 V+ GNL + V AL+ F +V R++ TG RGFG+V F AL+ + Sbjct: 287 VFVGNLPYRVDESALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALK-L 345 Query: 383 DGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQEKTASRGSEAEPQVXNNTSTSGQ 219 + EL GR LR+ + + Q + + Q N TS G+ Sbjct: 346 NNSELMGRKLRVMRSV------NKEKLKQQNSNPSVKKDGSKSKQRLNFTSKEGK 394
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 668 Score = 41.2 bits (95), Expect = 0.003 Identities = 23/65 (35%), Positives = 37/65 (56%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 VY NL + LK F G+ G + + V+ + +G SR FGFV+F + + A A++ M Sbjct: 227 VYVKNLPKEITDDELKKTF-GKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKM 285 Query: 383 DGVEL 369 +G+ L Sbjct: 286 NGISL 290 Score = 40.4 bits (93), Expect = 0.004 Identities = 24/75 (32%), Positives = 39/75 (52%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 +Y NL V LK F + +V+ G SRGFGFV++ ++A A++ M Sbjct: 330 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAMKEM 388 Query: 383 DGVELDGRPLRLSLA 339 +G + +PL ++LA Sbjct: 389 NGKMIGRKPLYVALA 403 Score = 36.6 bits (83), Expect = 0.065 Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 1/80 (1%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERD-TGRSRGFGFVSFHTIQDAKAALQA 387 +Y G+L V L F + RV RD T RS G+ +V+F +DA A+++ Sbjct: 47 LYVGDLDPSVNESHLLDLFNQVAPVHNLRVC--RDLTHRSLGYAYVNFANPEDASRAMES 104 Query: 386 MDGVELDGRPLRLSLAAQNP 327 ++ + RP+R+ L+ ++P Sbjct: 105 LNYAPIRDRPIRIMLSNRDP 124 Score = 35.8 bits (81), Expect = 0.11 Identities = 21/72 (29%), Positives = 37/72 (51%) Frame = -3 Query: 575 GTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 396 G V+ NL + AL F ++ +V + GRS+G+GFV F + A+AA Sbjct: 130 GKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAA 188 Query: 395 LQAMDGVELDGR 360 + ++G+ L+ + Sbjct: 189 IDKLNGMLLNDK 200
>SAFB2_HUMAN (Q14151) Scaffold attachment factor B2| Length = 953 Score = 41.2 bits (95), Expect = 0.003 Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 3/100 (3%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 ++ L RA LK F +VGA+V+ + +R +GFV+ T +A + + Sbjct: 409 LWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSDEATKCISHL 468 Query: 383 DGVELDGRPLRLSLAAQNPPAG---STPSXAQSQQEKTAS 273 EL GR + + A+N PAG S + ++EK +S Sbjct: 469 HRTELHGRMISVE-KAKNEPAGKKLSDRKECEVKKEKLSS 507
>RBM14_PONPY (Q5RC41) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 41.2 bits (95), Expect = 0.003 Identities = 25/103 (24%), Positives = 49/103 (47%) Frame = -3 Query: 572 TYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAAL 393 T+K++ GN+ + L++ FE + ++ V+ + + FV DAKAA+ Sbjct: 78 TWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEADAKAAI 129 Query: 392 QAMDGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQEKTASRGS 264 ++G E+ G+ + + L+ + G P A +KT G+ Sbjct: 130 AQLNGKEVKGKRINVELSTKGQKKG--PGLAVQSGDKTKKPGA 170
>RBM14_HUMAN (Q96PK6) RNA-binding protein 14 (RNA-binding motif protein 14)| (RRM-containing coactivator activator/modulator) (Synaptotagmin-interacting protein) (SYT-interacting protein) Length = 669 Score = 41.2 bits (95), Expect = 0.003 Identities = 25/103 (24%), Positives = 49/103 (47%) Frame = -3 Query: 572 TYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAAL 393 T+K++ GN+ + L++ FE + ++ V+ + + FV DAKAA+ Sbjct: 78 TWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEADAKAAI 129 Query: 392 QAMDGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQEKTASRGS 264 ++G E+ G+ + + L+ + G P A +KT G+ Sbjct: 130 AQLNGKEVKGKRINVELSTKGQKKG--PGLAVQSGDKTKKPGA 170
>RBM14_BOVIN (Q5EA36) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 41.2 bits (95), Expect = 0.003 Identities = 25/115 (21%), Positives = 51/115 (44%) Frame = -3 Query: 572 TYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAAL 393 T+K++ GN+ + L++ FE + ++ V+ + + FV DAKAA+ Sbjct: 78 TWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEADAKAAI 129 Query: 392 QAMDGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQEKTASRGSEAEPQVXNNTST 228 ++G E+ G+ + + L+ + G + + K G A P ++T Sbjct: 130 AQLNGKEVKGKRINVELSTKGQKKGPGLAIQSGDKTKKPGAGDTAFPGTGGFSAT 184
>YNR5_YEAST (P53883) Hypothetical 45.7 kDa protein in RPS3-PSD1 intergenic| region Length = 403 Score = 40.8 bits (94), Expect = 0.003 Identities = 33/130 (25%), Positives = 60/130 (46%), Gaps = 6/130 (4%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 ++ GNL + V L+ F+ +V R+ D+G+ +GF F+ F + + L+ Sbjct: 241 LFVGNLSFDVTDDLLRKHFQHCGDIVKIRMATFEDSGKCKGFAFIDFKNEEGSTNELKDK 300 Query: 383 DGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQE-KTASRGSEAEPQVXNNT--STSGQFG 213 ++ GRPLR+ G S Q +++ + SR + + + NN +GQ Sbjct: 301 SCRKIAGRPLRMEY-------GEDRSKRQVRKKVENVSRNNSSSFDISNNKGYDRAGQDN 353 Query: 212 G---EMEKSN 192 G E ++SN Sbjct: 354 GSKPEYKRSN 363
>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription| termination factor ctf1) Length = 363 Score = 40.8 bits (94), Expect = 0.003 Identities = 28/127 (22%), Positives = 55/127 (43%), Gaps = 9/127 (7%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 V+ GN+ + V + F + +++ + +TG +G+GF F + A++ + Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68 Query: 383 DGVELDGRPLRLSLAAQNPPAGS-------TPSXAQSQQEKTASRGSEAEPQVXNNTST- 228 + EL R +R+ + +P T + Q +S S P V ++TS+ Sbjct: 69 NNSELGPRKIRVEFPSNDPRRNQSYEYTERTDRYMEQQNAHESSYNSRFIPPVLHSTSSL 128 Query: 227 -SGQFGG 210 + Q GG Sbjct: 129 PASQGGG 135
>NAM8_YEAST (Q00539) Protein NAM8| Length = 523 Score = 40.8 bits (94), Expect = 0.003 Identities = 17/45 (37%), Positives = 30/45 (66%) Frame = -3 Query: 482 ARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 348 A+++ ++ TG S+G+GFV F + + AL M GV L+GR +++ Sbjct: 193 AKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQGVFLNGRAIKV 237
>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660| (Poly(A)-binding protein At2g36660) (PABP) Length = 609 Score = 40.8 bits (94), Expect = 0.003 Identities = 23/75 (30%), Positives = 40/75 (53%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 +Y N+ V L+ F Q G + + + + G+S+GFGFV F T ++A A++ Sbjct: 306 IYVKNVNVAVTEEELRKHFS-QCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTF 364 Query: 383 DGVELDGRPLRLSLA 339 G G+PL +++A Sbjct: 365 HGQMFHGKPLYVAIA 379 Score = 40.8 bits (94), Expect = 0.003 Identities = 24/84 (28%), Positives = 42/84 (50%) Frame = -3 Query: 572 TYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAAL 393 T +Y G+L V L AF L R+ + +GRS +G+ +F + QDA A+ Sbjct: 23 TASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAI 82 Query: 392 QAMDGVELDGRPLRLSLAAQNPPA 321 + + L+G+ +R+ + + P A Sbjct: 83 EKKNNSLLNGKMIRVMWSVRAPDA 106 Score = 35.8 bits (81), Expect = 0.11 Identities = 22/66 (33%), Positives = 33/66 (50%) Frame = -3 Query: 578 DGTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKA 399 +G V+ NL V L+ F+ +V +V D G+SRG+GFV F A A Sbjct: 109 NGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLED-GKSRGYGFVQFEQEDAAHA 167 Query: 398 ALQAMD 381 A+Q ++ Sbjct: 168 AIQTLN 173
>RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 375 Score = 40.8 bits (94), Expect = 0.003 Identities = 25/72 (34%), Positives = 37/72 (51%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 V+ GNL + + AL+ F +V R++ TG RGFG+V F AL+ + Sbjct: 293 VFVGNLPYKIEDSALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALK-L 351 Query: 383 DGVELDGRPLRL 348 + EL GR LR+ Sbjct: 352 NNSELMGRKLRV 363
>PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (68 kDa poly| U-binding splicing factor) (Protein half pint) (PUF60 homolog) Length = 637 Score = 40.8 bits (94), Expect = 0.003 Identities = 20/92 (21%), Positives = 45/92 (48%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 +VY G++ + ++ ++ AF + + ++ T + +GF FV + + A+ AL+ Sbjct: 131 RVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQ 190 Query: 386 MDGVELDGRPLRLSLAAQNPPAGSTPSXAQSQ 291 M+G + GR +++ + P A Q + Sbjct: 191 MNGALMGGRNIKVGRPSNMPQAQQVIDEVQEE 222
>SAFB2_MOUSE (Q80YR5) Scaffold attachment factor B2| Length = 991 Score = 40.4 bits (93), Expect = 0.004 Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 1/95 (1%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 ++ L RA LK+ F ++GA+V+ + +R +GFV+ T +A + + Sbjct: 453 LWVSGLSSSTRAADLKSLFSKHGKVIGAKVVTNARSPGARCYGFVTMSTSDEATKCISHL 512 Query: 383 DGVELDGRPLRLSLAAQNP-PAGSTPSXAQSQQEK 282 EL GR + + A P S+ A Q+EK Sbjct: 513 HRTELHGRMISVEKAKNEPSEKKSSDRRACDQKEK 547
>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)| (hnRNP 48) (HRP48.1) Length = 421 Score = 40.0 bits (92), Expect = 0.006 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 4/79 (5%) Frame = -3 Query: 581 DDGTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 402 +D K++ G L W L F ++ V+ ++GRSRGFGFV+F + Sbjct: 3 EDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVN 62 Query: 401 AALQ----AMDGVELDGRP 357 LQ +DG +D +P Sbjct: 63 HVLQNGPHTLDGRTIDPKP 81 Score = 39.3 bits (90), Expect = 0.010 Identities = 30/128 (23%), Positives = 51/128 (39%), Gaps = 6/128 (4%) Frame = -3 Query: 575 GTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 396 G YKV+ G L V L+T F + ++++++ +SRGFGF+SF + Sbjct: 94 GGYKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHV 153 Query: 395 LQAMDGVELDGRPLRLSLAAQNPPAG------STPSXAQSQQEKTASRGSEAEPQVXNNT 234 + L+G+ + + A +G ST A + S + Sbjct: 154 TNER-YINLNGKQVEIKKAEPRDGSGGQNSNNSTVGGAYGKLGNECSHWGPHHAPINMMQ 212 Query: 233 STSGQFGG 210 +GQ GG Sbjct: 213 GQNGQMGG 220
>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein F41) Length = 486 Score = 39.7 bits (91), Expect = 0.008 Identities = 18/50 (36%), Positives = 33/50 (66%) Frame = -3 Query: 491 LVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 342 +V A+V ++ T S+ FGFVS+ A+AA+Q+M+G ++ + L++ L Sbjct: 427 VVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 476
>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding protein) (EDEN-BP) Length = 486 Score = 39.7 bits (91), Expect = 0.008 Identities = 18/50 (36%), Positives = 33/50 (66%) Frame = -3 Query: 491 LVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 342 +V A+V ++ T S+ FGFVS+ A+AA+Q+M+G ++ + L++ L Sbjct: 427 VVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 476
>SFRS7_HUMAN (Q16629) Splicing factor, arginine/serine-rich 7 (Splicing factor| 9G8) Length = 238 Score = 39.7 bits (91), Expect = 0.008 Identities = 27/83 (32%), Positives = 38/83 (45%) Frame = -3 Query: 575 GTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 396 G KVY GNLG G L+ AF L + GF FV F +DA+ A Sbjct: 9 GETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDA 63 Query: 395 LQAMDGVELDGRPLRLSLAAQNP 327 ++ +DG + G +R+ L+ P Sbjct: 64 VRGLDGKVICGSRVRVELSTGMP 86
>LARK_DROME (Q94901) RNA-binding protein lark| Length = 352 Score = 39.7 bits (91), Expect = 0.008 Identities = 26/90 (28%), Positives = 47/90 (52%) Frame = -3 Query: 575 GTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 396 GT+K++ GNL +A L+ FE +V V+ + +GFV T Q + A Sbjct: 5 GTFKLFIGNLDEKTQATELRALFEKYGTVVECDVV--------KNYGFVHMETEQQGRDA 56 Query: 395 LQAMDGVELDGRPLRLSLAAQNPPAGSTPS 306 +Q ++G L+ +++ AA++ A +TP+ Sbjct: 57 IQNLNGYTLNEFAIKVE-AAKSRRAPNTPT 85 Score = 37.4 bits (85), Expect = 0.038 Identities = 20/78 (25%), Positives = 41/78 (52%) Frame = -3 Query: 572 TYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAAL 393 T K++ GNL RA ++ F+ +V ++ R +GFV + D + A+ Sbjct: 85 TTKIFVGNLTDKTRAPEVRELFQKYGTVVECDIV--------RNYGFVHLDCVGDVQDAI 136 Query: 392 QAMDGVELDGRPLRLSLA 339 + ++G +DG+PL++ ++ Sbjct: 137 KELNGRVVDGQPLKVQVS 154
>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 407 Score = 39.7 bits (91), Expect = 0.008 Identities = 31/119 (26%), Positives = 50/119 (42%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 K++ G L W L++ F +V ++ ++ T +SRGFGFV F + + A Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD-PNCVGTVLA 69 Query: 386 MDGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQEKTASRGSEAEPQVXNNTSTSGQFGG 210 LDGR + P TP Q ++ + G + P+ N+ S GG Sbjct: 70 SRPHTLDGRNI--------DPKPCTPRGMQPERTR-PKEGWQKGPRSDNSKSNKIFVGG 119 Score = 30.0 bits (66), Expect = 6.0 Identities = 23/109 (21%), Positives = 42/109 (38%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 K++ G + L+ F+ + +I++ + R RGFGF++F Q A+ Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN- 172 Query: 386 MDGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQEKTASRGSEAEPQVXN 240 M ++ G+ + + A P Q + GS P N Sbjct: 173 MHFHDIMGKKVEVKRAEPRDSKSQAPG-----QPGASQWGSRVVPNAAN 216
>SFRS7_MOUSE (Q8BL97) Splicing factor, arginine/serine-rich 7| Length = 267 Score = 39.7 bits (91), Expect = 0.008 Identities = 27/84 (32%), Positives = 38/84 (45%) Frame = -3 Query: 578 DGTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKA 399 D KVY GNLG G L+ AF L + GF FV F +DA+ Sbjct: 37 DSETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAED 91 Query: 398 ALQAMDGVELDGRPLRLSLAAQNP 327 A++ +DG + G +R+ L+ P Sbjct: 92 AVRGLDGKVICGSRVRVELSTGMP 115
>FUS_MOUSE (P56959) RNA-binding protein FUS (Pigpen protein)| Length = 518 Score = 39.3 bits (90), Expect = 0.010 Identities = 21/57 (36%), Positives = 32/57 (56%) Frame = -3 Query: 503 GQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQ 333 GQP + + +R+TG+ +G VSF AKAA+ DG E G P+++S A + Sbjct: 311 GQPMI---NLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATR 364
>PABP2_HUMAN (Q86U42) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 39.3 bits (90), Expect = 0.010 Identities = 21/84 (25%), Positives = 41/84 (48%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 +Y GN+ +G A L+ F G + ++ ++ +G +GF ++ F + + +L A+ Sbjct: 173 IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-AL 231 Query: 383 DGVELDGRPLRLSLAAQNPPAGST 312 D GR +++ N P ST Sbjct: 232 DESLFRGRQIKVIPKRTNRPGIST 255
>PABP2_BOVIN (Q28165) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA-binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 39.3 bits (90), Expect = 0.010 Identities = 21/84 (25%), Positives = 41/84 (48%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 +Y GN+ +G A L+ F G + ++ ++ +G +GF ++ F + + +L A+ Sbjct: 173 IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-AL 231 Query: 383 DGVELDGRPLRLSLAAQNPPAGST 312 D GR +++ N P ST Sbjct: 232 DESLFRGRQIKVIPKRTNRPGIST 255
>SGN1_YEAST (P40561) RNA-binding protein SGN1| Length = 250 Score = 39.3 bits (90), Expect = 0.010 Identities = 22/91 (24%), Positives = 48/91 (52%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 ++ GN+ V ++ F+ + ++++R+TG +G+G++ F + + ALQ + Sbjct: 66 IFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEFESPAYREKALQ-L 124 Query: 383 DGVELDGRPLRLSLAAQNPPAGSTPSXAQSQ 291 +G EL G+ + +S N P + +Q+Q Sbjct: 125 NGGELKGKKIAVSRKRTNIPGFNRHYNSQNQ 155
>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 39.3 bits (90), Expect = 0.010 Identities = 22/74 (29%), Positives = 38/74 (51%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 +Y NL + LK F + A+V+ E G+ +GFG V F + ++A A+ M Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEM 361 Query: 383 DGVELDGRPLRLSL 342 +G + +PL ++L Sbjct: 362 NGRVVGSKPLHVTL 375 Score = 36.2 bits (82), Expect = 0.084 Identities = 23/75 (30%), Positives = 39/75 (52%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 V+ N+G + LK F +VI + +G+S+GFGFV + T + A+ A+ + Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259 Query: 383 DGVELDGRPLRLSLA 339 G +DG+ L + A Sbjct: 260 HGKSIDGKVLYVGRA 274 Score = 32.7 bits (73), Expect = 0.93 Identities = 22/72 (30%), Positives = 34/72 (47%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 +Y G+L V L F L R+ + T G+G+V+F DA+ AL M Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 383 DGVELDGRPLRL 348 + ++G+P RL Sbjct: 80 NFDLINGKPFRL 91 Score = 31.6 bits (70), Expect = 2.1 Identities = 20/72 (27%), Positives = 36/72 (50%) Frame = -3 Query: 575 GTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 396 G ++ NL + AL F ++ +V+ + D G S+G+ +V F ++ A A Sbjct: 104 GVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD-DNG-SKGYAYVHFDSLAAANRA 161 Query: 395 LQAMDGVELDGR 360 + M+GV L+ R Sbjct: 162 IWHMNGVRLNNR 173
>FUS_HUMAN (P35637) RNA-binding protein FUS (Oncogene FUS) (Oncogene TLS)| (Translocated in liposarcoma protein) (POMp75) (75 kDa DNA-pairing protein) Length = 526 Score = 39.3 bits (90), Expect = 0.010 Identities = 21/57 (36%), Positives = 32/57 (56%) Frame = -3 Query: 503 GQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQ 333 GQP + + +R+TG+ +G VSF AKAA+ DG E G P+++S A + Sbjct: 318 GQPMI---NLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATR 371
>PABP2_MOUSE (Q8CCS6) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 301 Score = 39.3 bits (90), Expect = 0.010 Identities = 21/84 (25%), Positives = 41/84 (48%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 +Y GN+ +G A L+ F G + ++ ++ +G +GF ++ F + + +L A+ Sbjct: 169 IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-AL 227 Query: 383 DGVELDGRPLRLSLAAQNPPAGST 312 D GR +++ N P ST Sbjct: 228 DESLFRGRQIKVIPKRTNRPGIST 251
>RU17_ARATH (Q42404) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 427 Score = 39.3 bits (90), Expect = 0.010 Identities = 29/137 (21%), Positives = 54/137 (39%), Gaps = 34/137 (24%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 ++ L + +K FE + ++ ++ T + +G+ F+ + +D KAA + Sbjct: 140 LFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQA 199 Query: 383 DGVELDG----------------RPLRL-------------SLAAQNPPAGST-----PS 306 DG ++DG RP RL + + P G T PS Sbjct: 200 DGQKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTSRVGGGEEIVGEQQPQGRTSQSEEPS 259 Query: 305 XAQSQQEKTASRGSEAE 255 + ++EK+ +G E E Sbjct: 260 RPREEREKSREKGKERE 276
>FUS_BOVIN (Q28009) RNA-binding protein FUS (Pigpen protein)| Length = 512 Score = 39.3 bits (90), Expect = 0.010 Identities = 21/57 (36%), Positives = 32/57 (56%) Frame = -3 Query: 503 GQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQ 333 GQP + + +R+TG+ +G VSF AKAA+ DG E G P+++S A + Sbjct: 304 GQPMI---NLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATR 357
>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)| Length = 367 Score = 38.9 bits (89), Expect = 0.013 Identities = 19/81 (23%), Positives = 41/81 (50%) Frame = -3 Query: 581 DDGTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 402 DD + L + K+ F + +++ ++ TG+S G+GFV++ DA Sbjct: 35 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 94 Query: 401 AALQAMDGVELDGRPLRLSLA 339 A+ ++G++L + +++S A Sbjct: 95 KAINTLNGLKLQTKTIKVSYA 115 Score = 35.4 bits (80), Expect = 0.14 Identities = 20/98 (20%), Positives = 48/98 (48%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 +Y L + ++ F ++ +R++ ++ TG SRG GF+ F +A+ A++ + Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGL 186 Query: 383 DGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQEKTASR 270 +G + G +++ N P+ T + ++++R Sbjct: 187 NGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSAR 224 Score = 32.3 bits (72), Expect = 1.2 Identities = 15/49 (30%), Positives = 28/49 (57%) Frame = -3 Query: 491 LVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLS 345 + +VI + T + +GFGFV+ +A A+ +++G L R L++S Sbjct: 310 VTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVS 358
>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic| cerebellar degeneration-associated antigen) (Paraneoplastic limbic encephalitis antigen 21) Length = 367 Score = 38.9 bits (89), Expect = 0.013 Identities = 19/81 (23%), Positives = 41/81 (50%) Frame = -3 Query: 581 DDGTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 402 DD + L + K+ F + +++ ++ TG+S G+GFV++ DA Sbjct: 35 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 94 Query: 401 AALQAMDGVELDGRPLRLSLA 339 A+ ++G++L + +++S A Sbjct: 95 KAINTLNGLKLQTKTIKVSYA 115 Score = 34.7 bits (78), Expect = 0.25 Identities = 20/98 (20%), Positives = 48/98 (48%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 +Y L + ++ F ++ +R++ ++ TG SRG GF+ F +A+ A++ + Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186 Query: 383 DGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQEKTASR 270 +G + G +++ N P+ T + ++++R Sbjct: 187 NGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSAR 224 Score = 32.3 bits (72), Expect = 1.2 Identities = 15/49 (30%), Positives = 28/49 (57%) Frame = -3 Query: 491 LVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLS 345 + +VI + T + +GFGFV+ +A A+ +++G L R L++S Sbjct: 310 VTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVS 358
>HNRPM_MOUSE (Q9D0E1) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 728 Score = 38.9 bits (89), Expect = 0.013 Identities = 25/82 (30%), Positives = 41/82 (50%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 V+ NL + V LK F +V A ++ ++D G+SRG G V+F +A A+ Sbjct: 204 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-GKSRGIGIVTFEQSIEAVQAISMF 262 Query: 383 DGVELDGRPLRLSLAAQNPPAG 318 +G L RP+ + + + P G Sbjct: 263 NGQLLFDRPMHVKMDERALPKG 284 Score = 35.0 bits (79), Expect = 0.19 Identities = 29/138 (21%), Positives = 53/138 (38%), Gaps = 8/138 (5%) Frame = -3 Query: 569 YKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQ 390 Y+ + N+ + V+ +LK + + G V + G+SRG V F + K A + Sbjct: 69 YRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAE 128 Query: 389 AMDGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQEKTASRGS--------EAEPQVXNNT 234 ++ L GRPL++ ++P Q T G P + NN Sbjct: 129 VLNKHSLSGRPLKVK---EDPDGEHARRAMQKVMATTGGMGMGPGGPGMINIPPSILNNP 185 Query: 233 STSGQFGGEMEKSNLQAT 180 + + ++ L +T Sbjct: 186 NIPNEIIHALQAGRLGST 203 Score = 31.6 bits (70), Expect = 2.1 Identities = 20/71 (28%), Positives = 37/71 (52%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 +++ NL + LK F ++ A + E G+S+G G V F + + A+ A + Sbjct: 652 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMEN--GKSKGCGVVKFESPEVAERACRM 709 Query: 386 MDGVELDGRPL 354 M+G++L GR + Sbjct: 710 MNGMKLSGREI 720
>ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visual protein)| Length = 519 Score = 38.9 bits (89), Expect = 0.013 Identities = 20/77 (25%), Positives = 38/77 (49%) Frame = -3 Query: 575 GTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 396 G Y ++ NL AL F + +++ + T + +G+GFVS +A A Sbjct: 436 GAYPIFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMA 495 Query: 395 LQAMDGVELDGRPLRLS 345 ++A++G + R L++S Sbjct: 496 IRALNGYTMGNRVLQVS 512 Score = 35.4 bits (80), Expect = 0.14 Identities = 15/45 (33%), Positives = 29/45 (64%) Frame = -3 Query: 455 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPA 321 G+S G+GFV++ QDA+ A+ ++G+ L + +++S A + A Sbjct: 236 GQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDA 280
>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2| (hnRNP A3(B)) Length = 385 Score = 38.9 bits (89), Expect = 0.013 Identities = 22/69 (31%), Positives = 38/69 (55%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 K++ G L + +L+ FE L V+ + T RSRGFGFV++ +++ A++ A Sbjct: 28 KLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSA 87 Query: 386 MDGVELDGR 360 ++DGR Sbjct: 88 RPH-KVDGR 95 Score = 34.3 bits (77), Expect = 0.32 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 2/86 (2%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSF--HTIQDAKAAL 393 K++ G + L+ FEG + V+ +R +G+ RGF FV+F H D K + Sbjct: 119 KIFVGGIKEDTEEYHLRDYFEGYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVD-KIVV 177 Query: 392 QAMDGVELDGRPLRLSLAAQNPPAGS 315 Q + L ++ +L+ Q S Sbjct: 178 QKYHTINLHNCEVKKALSKQEMQTAS 203
>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Mel-N1) Length = 360 Score = 38.9 bits (89), Expect = 0.013 Identities = 23/98 (23%), Positives = 48/98 (48%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 +Y L + L+ F ++ +R++ ++ TG SRG GF+ F +A+ A++ + Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186 Query: 383 DGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQEKTASR 270 +G + G +++ N P+ T SQ ++ +R Sbjct: 187 NGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNR 224 Score = 38.5 bits (88), Expect = 0.017 Identities = 17/61 (27%), Positives = 38/61 (62%) Frame = -3 Query: 521 LKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 342 LK+ F + +++ ++ TG+S G+GFV++ +DA+ A+ ++G+ L + +++S Sbjct: 55 LKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY 114 Query: 341 A 339 A Sbjct: 115 A 115 Score = 33.5 bits (75), Expect = 0.55 Identities = 15/49 (30%), Positives = 29/49 (59%) Frame = -3 Query: 491 LVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLS 345 + +VI + +T + +GFGFV+ +A A+ +++G L R L++S Sbjct: 303 VTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS 351
>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 406 Score = 38.9 bits (89), Expect = 0.013 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 4/74 (5%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAAL-- 393 K++ G L W L++ F +V ++ ++ T +SRGFGFV F L Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70 Query: 392 --QAMDGVELDGRP 357 +DG +D +P Sbjct: 71 RPHTLDGRNIDPKP 84 Score = 30.4 bits (67), Expect = 4.6 Identities = 23/109 (21%), Positives = 42/109 (38%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 K++ G + L+ F+ + +I++ + R RGFGF++F Q A+ Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN- 172 Query: 386 MDGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQEKTASRGSEAEPQVXN 240 M ++ G+ + + A P Q + GS P N Sbjct: 173 MHFHDIMGKKVEVKRAEPRDSKNQAPG-----QPGASQWGSRVAPSAAN 216
>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 378 Score = 38.9 bits (89), Expect = 0.013 Identities = 23/69 (33%), Positives = 38/69 (55%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 K++ G L + +L+ FE L V+ + T RSRGFGFV++ +++ AA+ A Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95 Query: 386 MDGVELDGR 360 ++DGR Sbjct: 96 RPH-KVDGR 103
>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 38.9 bits (89), Expect = 0.013 Identities = 22/74 (29%), Positives = 38/74 (51%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 +Y NL + LK F + A+V+ E G+ +GFG V F + ++A A+ M Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEM 361 Query: 383 DGVELDGRPLRLSL 342 +G + +PL ++L Sbjct: 362 NGRIVGSKPLHVTL 375 Score = 36.2 bits (82), Expect = 0.084 Identities = 23/75 (30%), Positives = 39/75 (52%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 V+ N+G + LK F +VI + +G+S+GFGFV + T + A+ A+ + Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259 Query: 383 DGVELDGRPLRLSLA 339 G +DG+ L + A Sbjct: 260 HGKSIDGKVLYVGRA 274 Score = 32.7 bits (73), Expect = 0.93 Identities = 22/72 (30%), Positives = 34/72 (47%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 +Y G+L V L F L R+ + T G+G+V+F DA+ AL M Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 383 DGVELDGRPLRL 348 + ++G+P RL Sbjct: 80 NFDLINGKPFRL 91 Score = 31.6 bits (70), Expect = 2.1 Identities = 20/72 (27%), Positives = 36/72 (50%) Frame = -3 Query: 575 GTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 396 G ++ NL + AL F ++ +V+ + D G S+G+ +V F ++ A A Sbjct: 104 GVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD-DNG-SKGYAYVHFDSLAAANRA 161 Query: 395 LQAMDGVELDGR 360 + M+GV L+ R Sbjct: 162 IWHMNGVRLNNR 173
>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 38.9 bits (89), Expect = 0.013 Identities = 22/74 (29%), Positives = 38/74 (51%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 +Y NL + LK F + A+V+ E G+ +GFG V F + ++A A+ M Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEM 361 Query: 383 DGVELDGRPLRLSL 342 +G + +PL ++L Sbjct: 362 NGRIVGSKPLHVTL 375 Score = 36.2 bits (82), Expect = 0.084 Identities = 23/75 (30%), Positives = 39/75 (52%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 V+ N+G + LK F +VI + +G+S+GFGFV + T + A+ A+ + Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259 Query: 383 DGVELDGRPLRLSLA 339 G +DG+ L + A Sbjct: 260 HGKSIDGKVLYVGRA 274 Score = 32.7 bits (73), Expect = 0.93 Identities = 22/72 (30%), Positives = 34/72 (47%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 +Y G+L V L F L R+ + T G+G+V+F DA+ AL M Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 383 DGVELDGRPLRL 348 + ++G+P RL Sbjct: 80 NFDLINGKPFRL 91 Score = 31.6 bits (70), Expect = 2.1 Identities = 20/72 (27%), Positives = 36/72 (50%) Frame = -3 Query: 575 GTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 396 G ++ NL + AL F ++ +V+ + D G S+G+ +V F ++ A A Sbjct: 104 GVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD-DNG-SKGYAYVHFDSLAAANRA 161 Query: 395 LQAMDGVELDGR 360 + M+GV L+ R Sbjct: 162 IWHMNGVRLNNR 173
>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 38.9 bits (89), Expect = 0.013 Identities = 22/74 (29%), Positives = 38/74 (51%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 +Y NL + LK F + A+V+ E G+ +GFG V F + ++A A+ M Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEM 361 Query: 383 DGVELDGRPLRLSL 342 +G + +PL ++L Sbjct: 362 NGRIVGSKPLHVTL 375 Score = 36.2 bits (82), Expect = 0.084 Identities = 23/75 (30%), Positives = 39/75 (52%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 V+ N+G + LK F +VI + +G+S+GFGFV + T + A+ A+ + Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259 Query: 383 DGVELDGRPLRLSLA 339 G +DG+ L + A Sbjct: 260 HGKSIDGKVLYVGRA 274 Score = 32.7 bits (73), Expect = 0.93 Identities = 22/72 (30%), Positives = 34/72 (47%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 +Y G+L V L F L R+ + T G+G+V+F DA+ AL M Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 383 DGVELDGRPLRL 348 + ++G+P RL Sbjct: 80 NFDLINGKPFRL 91 Score = 31.6 bits (70), Expect = 2.1 Identities = 20/72 (27%), Positives = 36/72 (50%) Frame = -3 Query: 575 GTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 396 G ++ NL + AL F ++ +V+ + D G S+G+ +V F ++ A A Sbjct: 104 GVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD-DNG-SKGYAYVHFDSLAAANRA 161 Query: 395 LQAMDGVELDGR 360 + M+GV L+ R Sbjct: 162 IWHMNGVRLNNR 173
>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 38.9 bits (89), Expect = 0.013 Identities = 22/74 (29%), Positives = 38/74 (51%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 +Y NL + LK F + A+V+ E G+ +GFG V F + ++A A+ M Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEM 361 Query: 383 DGVELDGRPLRLSL 342 +G + +PL ++L Sbjct: 362 NGRIVGSKPLHVTL 375 Score = 36.2 bits (82), Expect = 0.084 Identities = 23/75 (30%), Positives = 39/75 (52%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 V+ N+G + LK F +VI + +G+S+GFGFV + T + A+ A+ + Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259 Query: 383 DGVELDGRPLRLSLA 339 G +DG+ L + A Sbjct: 260 HGKSIDGKVLYVGRA 274 Score = 32.7 bits (73), Expect = 0.93 Identities = 22/72 (30%), Positives = 34/72 (47%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 +Y G+L V L F L R+ + T G+G+V+F DA+ AL M Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 383 DGVELDGRPLRL 348 + ++G+P RL Sbjct: 80 NFDLINGKPFRL 91 Score = 31.6 bits (70), Expect = 2.1 Identities = 20/72 (27%), Positives = 36/72 (50%) Frame = -3 Query: 575 GTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 396 G ++ NL + AL F ++ +V+ + D G S+G+ +V F ++ A A Sbjct: 104 GVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD-DNG-SKGYAYVHFDSLAAANRA 161 Query: 395 LQAMDGVELDGR 360 + M+GV L+ R Sbjct: 162 IWHMNGVRLNNR 173
>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 38.9 bits (89), Expect = 0.013 Identities = 22/74 (29%), Positives = 38/74 (51%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 +Y NL + LK F + A+V+ E G+ +GFG V F + ++A A+ M Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEM 361 Query: 383 DGVELDGRPLRLSL 342 +G + +PL ++L Sbjct: 362 NGRIVGSKPLHVTL 375 Score = 36.2 bits (82), Expect = 0.084 Identities = 23/75 (30%), Positives = 39/75 (52%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 V+ N+G + LK F +VI + +G+S+GFGFV + T + A+ A+ + Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259 Query: 383 DGVELDGRPLRLSLA 339 G +DG+ L + A Sbjct: 260 HGKSIDGKVLYVGRA 274 Score = 32.7 bits (73), Expect = 0.93 Identities = 22/72 (30%), Positives = 34/72 (47%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 +Y G+L V L F L R+ + T G+G+V+F DA+ AL M Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 383 DGVELDGRPLRL 348 + ++G+P RL Sbjct: 80 NFDLINGKPFRL 91 Score = 31.6 bits (70), Expect = 2.1 Identities = 20/72 (27%), Positives = 36/72 (50%) Frame = -3 Query: 575 GTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 396 G ++ NL + AL F ++ +V+ + D G S+G+ +V F ++ A A Sbjct: 104 GVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD-DNG-SKGYAYVHFDSLAAANRA 161 Query: 395 LQAMDGVELDGR 360 + M+GV L+ R Sbjct: 162 IWHMNGVRLNNR 173
>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)| Length = 359 Score = 38.9 bits (89), Expect = 0.013 Identities = 23/98 (23%), Positives = 48/98 (48%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 +Y L + L+ F ++ +R++ ++ TG SRG GF+ F +A+ A++ + Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186 Query: 383 DGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQEKTASR 270 +G + G +++ N P+ T SQ ++ +R Sbjct: 187 NGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNR 224 Score = 38.5 bits (88), Expect = 0.017 Identities = 17/61 (27%), Positives = 38/61 (62%) Frame = -3 Query: 521 LKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 342 LK+ F + +++ ++ TG+S G+GFV++ +DA+ A+ ++G+ L + +++S Sbjct: 55 LKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY 114 Query: 341 A 339 A Sbjct: 115 A 115 Score = 33.5 bits (75), Expect = 0.55 Identities = 15/49 (30%), Positives = 29/49 (59%) Frame = -3 Query: 491 LVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLS 345 + +VI + +T + +GFGFV+ +A A+ +++G L R L++S Sbjct: 302 VTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS 350
>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2| Length = 359 Score = 38.9 bits (89), Expect = 0.013 Identities = 23/98 (23%), Positives = 48/98 (48%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 +Y L + L+ F ++ +R++ ++ TG SRG GF+ F +A+ A++ + Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186 Query: 383 DGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQEKTASR 270 +G + G +++ N P+ T SQ ++ +R Sbjct: 187 NGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNR 224 Score = 38.5 bits (88), Expect = 0.017 Identities = 17/61 (27%), Positives = 38/61 (62%) Frame = -3 Query: 521 LKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 342 LK+ F + +++ ++ TG+S G+GFV++ +DA+ A+ ++G+ L + +++S Sbjct: 55 LKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY 114 Query: 341 A 339 A Sbjct: 115 A 115 Score = 33.5 bits (75), Expect = 0.55 Identities = 15/49 (30%), Positives = 29/49 (59%) Frame = -3 Query: 491 LVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLS 345 + +VI + +T + +GFGFV+ +A A+ +++G L R L++S Sbjct: 302 VTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS 350
>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Hel-N1) Length = 359 Score = 38.9 bits (89), Expect = 0.013 Identities = 23/98 (23%), Positives = 48/98 (48%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 +Y L + L+ F ++ +R++ ++ TG SRG GF+ F +A+ A++ + Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186 Query: 383 DGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQEKTASR 270 +G + G +++ N P+ T SQ ++ +R Sbjct: 187 NGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNR 224 Score = 38.5 bits (88), Expect = 0.017 Identities = 17/61 (27%), Positives = 38/61 (62%) Frame = -3 Query: 521 LKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 342 LK+ F + +++ ++ TG+S G+GFV++ +DA+ A+ ++G+ L + +++S Sbjct: 55 LKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY 114 Query: 341 A 339 A Sbjct: 115 A 115 Score = 33.5 bits (75), Expect = 0.55 Identities = 15/49 (30%), Positives = 29/49 (59%) Frame = -3 Query: 491 LVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLS 345 + +VI + +T + +GFGFV+ +A A+ +++G L R L++S Sbjct: 302 VTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS 350
>MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing protein 1| Length = 819 Score = 38.9 bits (89), Expect = 0.013 Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 5/78 (6%) Frame = -3 Query: 572 TYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGR-----SRGFGFVSFHTIQD 408 T ++ NL + +L AF G V AR+ + D S GFGF F T Sbjct: 591 TATLFIKNLNFSTTNQSLIEAFRPLDGFVSARIKTKPDPKNPGQTLSMGFGFADFKTKAQ 650 Query: 407 AKAALQAMDGVELDGRPL 354 A+AAL M+G LD L Sbjct: 651 AQAALAVMNGYTLDRHTL 668 Score = 32.0 bits (71), Expect = 1.6 Identities = 23/76 (30%), Positives = 36/76 (47%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 K+ NL + +++ F L RV + D +RGFGF F + ++A+ A+ A Sbjct: 698 KIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRS-ARGFGFADFVSAREAENAMDA 756 Query: 386 MDGVELDGRPLRLSLA 339 + L GR L L A Sbjct: 757 LKNTHLLGRRLVLEFA 772 Score = 30.0 bits (66), Expect = 6.0 Identities = 19/78 (24%), Positives = 34/78 (43%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 +++ NL + + L+ F + V F+ S+GF +V + A A + Sbjct: 296 RLFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYADPDAAVEAYRN 355 Query: 386 MDGVELDGRPLRLSLAAQ 333 +DG GR L + A+Q Sbjct: 356 LDGKIFQGRLLHILPASQ 373
>RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 homolog 1| (hnRNP A3(A)) Length = 373 Score = 38.9 bits (89), Expect = 0.013 Identities = 22/69 (31%), Positives = 38/69 (55%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 K++ G L + +L+ FE L V+ + T RSRGFGFV++ +++ A++ A Sbjct: 28 KLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSA 87 Query: 386 MDGVELDGR 360 ++DGR Sbjct: 88 RPH-KVDGR 95
>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 38.9 bits (89), Expect = 0.013 Identities = 23/69 (33%), Positives = 38/69 (55%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 K++ G L + +L+ FE L V+ + T RSRGFGFV++ +++ AA+ A Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95 Query: 386 MDGVELDGR 360 ++DGR Sbjct: 96 RPH-KVDGR 103
>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 38.9 bits (89), Expect = 0.013 Identities = 23/69 (33%), Positives = 38/69 (55%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 K++ G L + +L+ FE L V+ + T RSRGFGFV++ +++ AA+ A Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95 Query: 386 MDGVELDGR 360 ++DGR Sbjct: 96 RPH-KVDGR 103
>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)| Length = 305 Score = 38.9 bits (89), Expect = 0.013 Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 1/129 (0%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 K++ G L L+ FE L V+ T RSR FGFV++ +++A AA+ A Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67 Query: 386 MDGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQEKTAS-RGSEAEPQVXNNTSTSGQFGG 210 +DG + L A + + A+ ++ +G AE + + S QF G Sbjct: 68 SPHA-VDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFS---QF-G 122 Query: 209 EMEKSNLQA 183 +EK+ + A Sbjct: 123 TVEKAEIIA 131 Score = 30.0 bits (66), Expect = 6.0 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSF--HTIQDAKAAL 393 K++ G L V L F + A +I ++ +G+ RGFGFV F H D A + Sbjct: 99 KLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVV 158 Query: 392 Q 390 + Sbjct: 159 K 159
>ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visual protein)| Length = 483 Score = 38.9 bits (89), Expect = 0.013 Identities = 20/77 (25%), Positives = 38/77 (49%) Frame = -3 Query: 575 GTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 396 G Y ++ NL AL F + +++ + T + +G+GFVS +A A Sbjct: 400 GAYPIFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMA 459 Query: 395 LQAMDGVELDGRPLRLS 345 ++A++G + R L++S Sbjct: 460 IRALNGYTMGNRVLQVS 476 Score = 35.4 bits (80), Expect = 0.14 Identities = 15/45 (33%), Positives = 29/45 (64%) Frame = -3 Query: 455 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPA 321 G+S G+GFV++ QDA+ A+ ++G+ L + +++S A + A Sbjct: 200 GQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDA 244
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 38.5 bits (88), Expect = 0.017 Identities = 29/120 (24%), Positives = 58/120 (48%) Frame = -3 Query: 575 GTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 396 G+ ++ NL + AL F ++ +++ + + G+S+GFGFV F AK A Sbjct: 123 GSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEA 181 Query: 395 LQAMDGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQEKTASRGSEAEPQVXNNTSTSGQF 216 + A++G+ L+G+ + ++ + SQ E+T + + + N+ +T QF Sbjct: 182 IDALNGMLLNGQEIYVA-------PHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQF 234 Score = 37.4 bits (85), Expect = 0.038 Identities = 22/79 (27%), Positives = 40/79 (50%) Frame = -3 Query: 494 GLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGS 315 G + + + + G+S+GFGFV F T ++A A+ + + G+PL +++A + S Sbjct: 345 GTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRS 404 Query: 314 TPSXAQSQQEKTASRGSEA 258 AQ Q + R +A Sbjct: 405 --QLAQQIQARNQMRYQQA 421 Score = 34.3 bits (77), Expect = 0.32 Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 1/44 (2%) Frame = -3 Query: 467 ERDT-GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 339 E+D G+ +GFGFV++ +DA A++A++ EL+G L + A Sbjct: 250 EKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRA 293
>RAVR1_MOUSE (Q9CW46) Protein raver-1| Length = 748 Score = 38.5 bits (88), Expect = 0.017 Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 5/82 (6%) Frame = -3 Query: 455 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQEKTA 276 G+ +GF + + T + A+AA + DG L LR+S A PP S + + Q Sbjct: 259 GQLKGFAVLEYETAEMAEAAQERADGQALGDSHLRVSFCAPGPPGRSMLAALIAAQATAL 318 Query: 275 SRGSEAEP-----QVXNNTSTS 225 +RG P Q+ NN S Sbjct: 319 NRGKGLLPEPNLLQLLNNLGPS 340
>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 380 Score = 38.1 bits (87), Expect = 0.022 Identities = 22/98 (22%), Positives = 48/98 (48%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 +Y L + L+ F ++ +R++ ++ TG SRG GF+ F +A+ A++ + Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193 Query: 383 DGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQEKTASR 270 +G + G +++ N P+ + SQ ++ +R Sbjct: 194 NGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNR 231 Score = 37.4 bits (85), Expect = 0.038 Identities = 18/81 (22%), Positives = 42/81 (51%) Frame = -3 Query: 581 DDGTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 402 DD + L + ++ F + +++ ++ TG+S G+GFV++ +DA+ Sbjct: 42 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 101 Query: 401 AALQAMDGVELDGRPLRLSLA 339 A+ ++G+ L + +++S A Sbjct: 102 KAINTLNGLRLQTKTIKVSYA 122 Score = 33.1 bits (74), Expect = 0.71 Identities = 15/45 (33%), Positives = 28/45 (62%) Frame = -3 Query: 479 RVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLS 345 +VI + +T + +GFGFV+ +A A+ +++G L R L++S Sbjct: 327 KVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS 371
>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5| Length = 388 Score = 38.1 bits (87), Expect = 0.022 Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 1/89 (1%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGA-RVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 ++ GNL V L F ++ +++ + D+G S+GF F++F + + + AL+A Sbjct: 102 IFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEA 161 Query: 386 MDGVELDGRPLRLSLAAQNPPAGSTPSXA 300 M+G L R + +S A + G A Sbjct: 162 MNGQFLCNRAITVSYAFKRDSKGERHGTA 190 Score = 37.4 bits (85), Expect = 0.038 Identities = 21/76 (27%), Positives = 39/76 (51%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 +Y G L V L +V + +R T +GFGFV F +DA A++ + Sbjct: 15 IYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKIL 74 Query: 383 DGVELDGRPLRLSLAA 336 + ++L G+P++++ A+ Sbjct: 75 NMIKLYGKPIKVNKAS 90
>RBP56_HUMAN (Q92804) TATA-binding protein-associated factor 2N (RNA-binding| protein 56) (TAFII68) (TAF(II)68) Length = 592 Score = 38.1 bits (87), Expect = 0.022 Identities = 18/47 (38%), Positives = 27/47 (57%) Frame = -3 Query: 467 ERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNP 327 ++DTG+ +G VSF AKAA+ DG E G +++S A + P Sbjct: 276 DKDTGKPKGEATVSFDDPPSAKAAIDWFDGKEFHGNIIKVSFATRRP 322
>HNRPM_RAT (Q62826) Heterogeneous nuclear ribonucleoprotein M (hnRNP M) (M4| protein) Length = 689 Score = 38.1 bits (87), Expect = 0.022 Identities = 25/82 (30%), Positives = 41/82 (50%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 V+ NL + V LK F +V A ++ ++D G+SRG G V+F +A A+ Sbjct: 165 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-GKSRGIGTVTFEQSIEAVQAISMF 223 Query: 383 DGVELDGRPLRLSLAAQNPPAG 318 +G L RP+ + + + P G Sbjct: 224 NGQLLFDRPMHVKMDERALPKG 245 Score = 34.3 bits (77), Expect = 0.32 Identities = 20/74 (27%), Positives = 36/74 (48%) Frame = -3 Query: 569 YKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQ 390 Y+ + N+ + V+ +LK + + G V + G+SRG V F + K A + Sbjct: 69 YRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAE 128 Query: 389 AMDGVELDGRPLRL 348 ++ L GRPL++ Sbjct: 129 VLNKHSLSGRPLKV 142 Score = 31.6 bits (70), Expect = 2.1 Identities = 20/71 (28%), Positives = 37/71 (52%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 +++ NL + LK F ++ A + E G+S+G G V F + + A+ A + Sbjct: 613 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMEN--GKSKGCGVVKFESPEVAERACRM 670 Query: 386 MDGVELDGRPL 354 M+G++L GR + Sbjct: 671 MNGMKLSGREI 681
>TCG1_SCHPO (Q9HEQ9) Single-stranded TG1-3 DNA-binding protein| Length = 348 Score = 38.1 bits (87), Expect = 0.022 Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 13/111 (11%) Frame = -3 Query: 518 KTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 339 + A P + R+ + R RGFGFVSF +D A++ M+G ++ L + A Sbjct: 234 RIAVRSLPPYIIRRIKLRGEQRRGRGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSA 293 Query: 338 A-------------QNPPAGSTPSXAQSQQEKTASRGSEAEPQVXNNTSTS 225 +N P ++ S + + T + SE + + + + S Sbjct: 294 VFREDKQNDENEKNENEPIEASESAPTNVSDSTEPKASEVDSEEKSGVTAS 344
>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 385 Score = 38.1 bits (87), Expect = 0.022 Identities = 22/98 (22%), Positives = 48/98 (48%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 +Y L + L+ F ++ +R++ ++ TG SRG GF+ F +A+ A++ + Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 198 Query: 383 DGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQEKTASR 270 +G + G +++ N P+ + SQ ++ +R Sbjct: 199 NGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNR 236 Score = 37.4 bits (85), Expect = 0.038 Identities = 18/81 (22%), Positives = 42/81 (51%) Frame = -3 Query: 581 DDGTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 402 DD + L + ++ F + +++ ++ TG+S G+GFV++ +DA+ Sbjct: 47 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 106 Query: 401 AALQAMDGVELDGRPLRLSLA 339 A+ ++G+ L + +++S A Sbjct: 107 KAINTLNGLRLQTKTIKVSYA 127 Score = 33.1 bits (74), Expect = 0.71 Identities = 15/45 (33%), Positives = 28/45 (62%) Frame = -3 Query: 479 RVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLS 345 +VI + +T + +GFGFV+ +A A+ +++G L R L++S Sbjct: 332 KVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS 376
>NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NOP77)| Length = 685 Score = 38.1 bits (87), Expect = 0.022 Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 4/86 (4%) Frame = -3 Query: 476 VIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSXAQ 297 V+ + RSRGFGFVSF D K AL + +G LR+ +A + + T + Sbjct: 56 VVVKDTNKRSRGFGFVSFAVEDDTKEALAKARKTKFNGHILRVDIAKRRDRSKKTSEVVE 115 Query: 296 ----SQQEKTASRGSEAEPQVXNNTS 231 EK + +E E S Sbjct: 116 KSTPESSEKITGQNNEDEDDADGEDS 141 Score = 37.0 bits (84), Expect = 0.049 Identities = 22/81 (27%), Positives = 36/81 (44%) Frame = -3 Query: 575 GTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 396 G K+ N+ W R G+ G V I + G+ GF FV+ I + + A Sbjct: 145 GKPKLIIRNMPWSCRDPVKLKKIFGRYGTVVEATIPRKRDGKLCGFAFVTMKKISNCRIA 204 Query: 395 LQAMDGVELDGRPLRLSLAAQ 333 L+ +++DGR + + A Q Sbjct: 205 LENTKDLKIDGRKVAVDFAVQ 225
>HNRPM_HUMAN (P52272) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 729 Score = 38.1 bits (87), Expect = 0.022 Identities = 25/82 (30%), Positives = 41/82 (50%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 V+ NL + V LK F +V A ++ ++D G+SRG G V+F +A A+ Sbjct: 205 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-GKSRGIGTVTFEQSIEAVQAISMF 263 Query: 383 DGVELDGRPLRLSLAAQNPPAG 318 +G L RP+ + + + P G Sbjct: 264 NGQLLFDRPMHVKMDERALPKG 285 Score = 34.7 bits (78), Expect = 0.25 Identities = 29/138 (21%), Positives = 53/138 (38%), Gaps = 8/138 (5%) Frame = -3 Query: 569 YKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQ 390 Y+ + N+ + V+ +LK + + G V + G+SRG V F + K A + Sbjct: 70 YRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAE 129 Query: 389 AMDGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQEKTASRGS--------EAEPQVXNNT 234 ++ L GRPL++ ++P Q T G P + NN Sbjct: 130 VLNKHSLSGRPLKVK---EDPDGEHARRAMQKVMATTGGMGMGPGGPGMITIPPSILNNP 186 Query: 233 STSGQFGGEMEKSNLQAT 180 + + ++ L +T Sbjct: 187 NIPNEIIHALQAGRLGST 204 Score = 31.6 bits (70), Expect = 2.1 Identities = 20/71 (28%), Positives = 37/71 (52%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 +++ NL + LK F ++ A + E G+S+G G V F + + A+ A + Sbjct: 653 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMEN--GKSKGCGVVKFESPEVAERACRM 710 Query: 386 MDGVELDGRPL 354 M+G++L GR + Sbjct: 711 MNGMKLSGREI 721
>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 373 Score = 38.1 bits (87), Expect = 0.022 Identities = 22/98 (22%), Positives = 48/98 (48%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 +Y L + L+ F ++ +R++ ++ TG SRG GF+ F +A+ A++ + Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186 Query: 383 DGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQEKTASR 270 +G + G +++ N P+ + SQ ++ +R Sbjct: 187 NGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNR 224 Score = 37.4 bits (85), Expect = 0.038 Identities = 18/81 (22%), Positives = 42/81 (51%) Frame = -3 Query: 581 DDGTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 402 DD + L + ++ F + +++ ++ TG+S G+GFV++ +DA+ Sbjct: 35 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94 Query: 401 AALQAMDGVELDGRPLRLSLA 339 A+ ++G+ L + +++S A Sbjct: 95 KAINTLNGLRLQTKTIKVSYA 115 Score = 33.1 bits (74), Expect = 0.71 Identities = 15/45 (33%), Positives = 28/45 (62%) Frame = -3 Query: 479 RVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLS 345 +VI + +T + +GFGFV+ +A A+ +++G L R L++S Sbjct: 320 KVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS 364
>SRR55_DROME (P26686) Serine-arginine protein 55 (SRP55) (Protein enhancer of| deformed) (52-kDa bracketing protein) (B52 protein) Length = 375 Score = 38.1 bits (87), Expect = 0.022 Identities = 31/118 (26%), Positives = 49/118 (41%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 +VY G L +GVR L+ F+G RD G+GFV F +DA A+ Sbjct: 4 RVYVGGLPYGVRERDLERFFKGYGR--------TRDILIKNGYGFVEFEDYRDADDAVYE 55 Query: 386 MDGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQEKTASRGSEAEPQVXNNTSTSGQFG 213 ++G EL G + + A+ GS + G + N+ +S ++G Sbjct: 56 LNGKELLGERVVVE-PARGTARGSNRDRYDDRYGGRRGGGGGRYNEKNKNSRSSSRYG 112
>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog| Length = 342 Score = 37.7 bits (86), Expect = 0.029 Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 4/89 (4%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSF---HTIQDAK-A 399 K++ G L + +LK FE +V V+ + T RSRGFGF+++ H + DA+ A Sbjct: 18 KLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDDAQNA 77 Query: 398 ALQAMDGVELDGRPLRLSLAAQNPPAGST 312 +DG ++ + P AG+T Sbjct: 78 RPHKVDGRVVEPKRAVPRTEIGRPEAGAT 106
>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 341 Score = 37.7 bits (86), Expect = 0.029 Identities = 24/83 (28%), Positives = 41/83 (49%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 K++ G L + +L+ +E L V+ + + RSRGFGFV+F ++ + AA+ A Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69 Query: 386 MDGVELDGRPLRLSLAAQNPPAG 318 +DGR + A +G Sbjct: 70 RPH-SIDGRVVEPKRAVAREESG 91 Score = 32.3 bits (72), Expect = 1.2 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 2/80 (2%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSF--HTIQDAKAAL 393 K++ G + L+ FE + +I +R +G+ RGFGFV+F H D K L Sbjct: 101 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVD-KIVL 159 Query: 392 QAMDGVELDGRPLRLSLAAQ 333 Q + +R +L+ Q Sbjct: 160 QKYHTINGHNAEVRKALSRQ 179
>RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 749 Score = 37.7 bits (86), Expect = 0.029 Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 6/87 (6%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 V+ NL + AL + L RV+ DT S+G F F T + A+ L A Sbjct: 326 VFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAA 385 Query: 383 D------GVELDGRPLRLSLAAQNPPA 321 G++LDGR L++ LA A Sbjct: 386 SPEAEGGGLKLDGRQLKVDLAVTRDEA 412 Score = 32.0 bits (71), Expect = 1.6 Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 3/69 (4%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQ-- 390 ++ G L R+ L+ F + V+ E+ + RGFG+V+F ++D + AL+ Sbjct: 5 LFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 64 Query: 389 -AMDGVELD 366 +G ++D Sbjct: 65 TTFEGCKID 73
>IF4H_MOUSE (Q9WUK2) Eukaryotic translation initiation factor 4H (eIF-4H)| (Williams-Beuren syndrome chromosome region 1 protein homolog) Length = 247 Score = 37.7 bits (86), Expect = 0.029 Identities = 23/77 (29%), Positives = 37/77 (48%) Frame = -3 Query: 569 YKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQ 390 Y Y GNL + + F+ + R++ ++DT + +GF +V F + K AL Sbjct: 41 YTAYVGNLPFNTVQGDIDAIFKDL-SIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL- 98 Query: 389 AMDGVELDGRPLRLSLA 339 DG L R LR+ +A Sbjct: 99 TYDGALLGDRSLRVDIA 115
>IF4H_HUMAN (Q15056) Eukaryotic translation initiation factor 4H (eIF-4H)| (Williams-Beuren syndrome chromosome region 1 protein) Length = 247 Score = 37.7 bits (86), Expect = 0.029 Identities = 23/77 (29%), Positives = 37/77 (48%) Frame = -3 Query: 569 YKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQ 390 Y Y GNL + + F+ + R++ ++DT + +GF +V F + K AL Sbjct: 41 YTAYVGNLPFNTVQGDIDAIFKDL-SIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL- 98 Query: 389 AMDGVELDGRPLRLSLA 339 DG L R LR+ +A Sbjct: 99 TYDGALLGDRSLRVDIA 115
>RBM7_BOVIN (Q3MHY8) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 262 Score = 37.7 bits (86), Expect = 0.029 Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 1/116 (0%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 ++ GNL V L F ++ ++ ++D G+ + F FV+F A+ + Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKD-GKPKQFAFVNFKHEVSVPYAMNLL 70 Query: 383 DGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQEKTASRGSEAEP-QVXNNTSTSGQ 219 +G++L GRP+++ A + A S + Q S + P + +N + S Q Sbjct: 71 NGIKLFGRPIKIQFRAGSSHASQEVSLSYPQHHVGNSSPTSTSPSRTVDNMTPSAQ 126
>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 353 Score = 37.7 bits (86), Expect = 0.029 Identities = 24/83 (28%), Positives = 41/83 (49%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 K++ G L + +L+ +E L V+ + + RSRGFGFV+F ++ + AA+ A Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81 Query: 386 MDGVELDGRPLRLSLAAQNPPAG 318 +DGR + A +G Sbjct: 82 RPH-SIDGRVVEPKRAVAREESG 103 Score = 32.3 bits (72), Expect = 1.2 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 2/80 (2%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSF--HTIQDAKAAL 393 K++ G + L+ FE + +I +R +G+ RGFGFV+F H D K L Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVD-KIVL 171 Query: 392 QAMDGVELDGRPLRLSLAAQ 333 Q + +R +L+ Q Sbjct: 172 QKYHTINGHNAEVRKALSRQ 191
>HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 353 Score = 37.4 bits (85), Expect = 0.038 Identities = 22/66 (33%), Positives = 34/66 (51%) Frame = -3 Query: 569 YKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQ 390 +K++ G L W LK F +V + + TGRSRGFGFV F +++++ + Sbjct: 95 WKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLF---KESESVDK 151 Query: 389 AMDGVE 372 MD E Sbjct: 152 VMDQKE 157
>MK67I_BRARE (Q8JIY8) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| (Nucleolar phosphoprotein NOPP34-like protein) Length = 269 Score = 37.4 bits (85), Expect = 0.038 Identities = 22/71 (30%), Positives = 37/71 (52%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 +Y G+L G+ LK+ FE ++ RV + TG S+G+GFV F + AK + M Sbjct: 47 LYVGHLPRGLFEPQLKSYFEQFGKVLRLRVSRSKKTGGSKGYGFVEFECDEVAKIVAETM 106 Query: 383 DGVELDGRPLR 351 + + R ++ Sbjct: 107 NNYLMGERIIK 117
>PPIE_SCHMA (Q26548) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) Length = 273 Score = 37.4 bits (85), Expect = 0.038 Identities = 16/40 (40%), Positives = 27/40 (67%) Frame = -3 Query: 458 TGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 339 T + RGF FV F ++DA +A+ M+ E+ GR +R+++A Sbjct: 7 TEKHRGFAFVEFEEVEDAMSAIDNMNESEIFGRTIRVNVA 46
>IF34_MOUSE (Q9Z1D1) Eukaryotic translation initiation factor 3 subunit 4| (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (Eif3p42) (eIF3g) Length = 320 Score = 37.0 bits (84), Expect = 0.049 Identities = 22/72 (30%), Positives = 35/72 (48%) Frame = -3 Query: 581 DDGTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 402 D+ T +V NL R L+ F + + ++ TG+S+GF F+SFH +DA Sbjct: 237 DNATIRVT--NLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAA 294 Query: 401 AALQAMDGVELD 366 A+ + G D Sbjct: 295 RAIAGVSGFGYD 306
>IF34_HUMAN (O75821) Eukaryotic translation initiation factor 3 subunit 4| (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (eIF3g) Length = 320 Score = 37.0 bits (84), Expect = 0.049 Identities = 22/72 (30%), Positives = 35/72 (48%) Frame = -3 Query: 581 DDGTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 402 D+ T +V NL R L+ F + + ++ TG+S+GF F+SFH +DA Sbjct: 237 DNATIRVT--NLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAA 294 Query: 401 AALQAMDGVELD 366 A+ + G D Sbjct: 295 RAIAGVSGFGYD 306
>HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 37.0 bits (84), Expect = 0.049 Identities = 22/66 (33%), Positives = 34/66 (51%) Frame = -3 Query: 569 YKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQ 390 +K++ G L W LK F +V + + TGRSRGFGFV F +++++ + Sbjct: 97 WKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF---KESESVDK 153 Query: 389 AMDGVE 372 MD E Sbjct: 154 VMDQKE 159
>HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 37.0 bits (84), Expect = 0.049 Identities = 22/66 (33%), Positives = 34/66 (51%) Frame = -3 Query: 569 YKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQ 390 +K++ G L W LK F +V + + TGRSRGFGFV F +++++ + Sbjct: 97 WKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF---KESESVDK 153 Query: 389 AMDGVE 372 MD E Sbjct: 154 VMDQKE 159
>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 homolog 2| (hnRNP A2(B)) Length = 358 Score = 37.0 bits (84), Expect = 0.049 Identities = 22/69 (31%), Positives = 36/69 (52%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 K++ G L + +L+ +E L V+ + + RSRGFGFV+F + + AA+ A Sbjct: 10 KLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMSA 69 Query: 386 MDGVELDGR 360 +DGR Sbjct: 70 RPHT-IDGR 77 Score = 33.1 bits (74), Expect = 0.71 Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 1/79 (1%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDA-KAALQ 390 K++ G + L+ FE + +I ++ +G+ RGFGFV+F+ K LQ Sbjct: 101 KLFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTFNDHDPVDKIVLQ 160 Query: 389 AMDGVELDGRPLRLSLAAQ 333 + +R +L+ Q Sbjct: 161 KYHTINGHNAEVRKALSKQ 179
>NGR1_YEAST (P32831) Negative growth regulatory protein NGR1 (RNA-binding| protein RBP1) Length = 672 Score = 36.6 bits (83), Expect = 0.065 Identities = 22/73 (30%), Positives = 33/73 (45%) Frame = -3 Query: 437 GFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQEKTASRGSEA 258 GFV F DA+A++Q + G + G P+RLS + T S + +S G A Sbjct: 398 GFVKFEKRIDAEASIQGLQGFIVGGSPIRLSWGRPSSSNAKTNSTIMGASQYMSSNGLRA 457 Query: 257 EPQVXNNTSTSGQ 219 P ++ S Q Sbjct: 458 -PSAASSVDNSKQ 469
>BOLL_MACFA (Q8WP23) Protein boule-like| Length = 283 Score = 36.6 bits (83), Expect = 0.065 Identities = 19/83 (22%), Positives = 40/83 (48%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 +++ G + + L+ F + +++ +R G S+G+GFV+F T +DA+ LQ Sbjct: 34 RIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVTFETQEDAQKILQE 92 Query: 386 MDGVELDGRPLRLSLAAQNPPAG 318 + + + L + A + G Sbjct: 93 AEKLNYKDKKLNIGPAIRKQQVG 115
>BOLL_HUMAN (Q8N9W6) Protein boule-like| Length = 283 Score = 36.6 bits (83), Expect = 0.065 Identities = 19/83 (22%), Positives = 40/83 (48%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 +++ G + + L+ F + +++ +R G S+G+GFV+F T +DA+ LQ Sbjct: 34 RIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVTFETQEDAQKILQE 92 Query: 386 MDGVELDGRPLRLSLAAQNPPAG 318 + + + L + A + G Sbjct: 93 AEKLNYKDKKLNIGPAIRKQQVG 115
>RBM11_HUMAN (P57052) Putative RNA-binding protein 11 (RNA-binding motif protein| 11) Length = 281 Score = 36.6 bits (83), Expect = 0.065 Identities = 22/72 (30%), Positives = 35/72 (48%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 V+ GNL VR L F L + +R+ G+ + FGFV F + A+ + Sbjct: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALL 70 Query: 383 DGVELDGRPLRL 348 +G+ L GRP+ + Sbjct: 71 NGIRLYGRPINV 82
>MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 36.6 bits (83), Expect = 0.065 Identities = 18/52 (34%), Positives = 28/52 (53%) Frame = -3 Query: 572 TYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHT 417 T K++ G L +K FE + A ++F++ T R RGFGFV+F + Sbjct: 108 TKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFES 159 Score = 32.0 bits (71), Expect = 1.6 Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 2/50 (4%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERD--TGRSRGFGFVSF 423 K++ G L W L+ F GQ G V ++ RD T RSRGFGFV+F Sbjct: 21 KMFIGGLSWQTTQEGLREYF-GQFGEVKECLVM-RDPLTKRSRGFGFVTF 68
>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP| A1) (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 365 Score = 36.2 bits (82), Expect = 0.084 Identities = 22/69 (31%), Positives = 38/69 (55%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 K++ G L + +L+ FE L V+ + ++ RSRGFGFV++ + + AA+ A Sbjct: 15 KLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVDAAMTA 74 Query: 386 MDGVELDGR 360 ++DGR Sbjct: 75 RPH-KVDGR 82 Score = 34.3 bits (77), Expect = 0.32 Identities = 28/121 (23%), Positives = 47/121 (38%), Gaps = 1/121 (0%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDA-KAALQ 390 K++ G + L+ FE + ++ +R +G+ RGF FV+F K +Q Sbjct: 106 KIFVGGIKEDTEEDHLREYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKIVIQ 165 Query: 389 AMDGVELDGRPLRLSLAAQNPPAGSTPSXAQSQQEKTASRGSEAEPQVXNNTSTSGQFGG 210 V +R +L S+QE + GS+ E N + G FG Sbjct: 166 KYHTVNNHNSQVRKAL---------------SKQEMASVSGSQRERGGSGNYGSRGGFGN 210 Query: 209 E 207 + Sbjct: 211 D 211
>MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 36.2 bits (82), Expect = 0.084 Identities = 18/52 (34%), Positives = 28/52 (53%) Frame = -3 Query: 572 TYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHT 417 T K++ G L +K FE + A ++F++ T R RGFGFV+F + Sbjct: 108 TKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFES 159 Score = 32.0 bits (71), Expect = 1.6 Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 2/50 (4%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERD--TGRSRGFGFVSF 423 K++ G L W L+ F GQ G V ++ RD T RSRGFGFV+F Sbjct: 21 KMFIGGLSWQTTQEGLREYF-GQFGEVKECLVM-RDPLTKRSRGFGFVTF 68
>MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 36.2 bits (82), Expect = 0.084 Identities = 18/52 (34%), Positives = 28/52 (53%) Frame = -3 Query: 572 TYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHT 417 T K++ G L +K FE + A ++F++ T R RGFGFV+F + Sbjct: 108 TKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFES 159 Score = 32.0 bits (71), Expect = 1.6 Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 2/50 (4%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERD--TGRSRGFGFVSF 423 K++ G L W L+ F GQ G V ++ RD T RSRGFGFV+F Sbjct: 21 KMFIGGLSWQTTQEGLREYF-GQFGEVKECLVM-RDPLTKRSRGFGFVTF 68
>RBP1_DROME (Q02427) RNA-binding protein 1| Length = 144 Score = 36.2 bits (82), Expect = 0.084 Identities = 24/77 (31%), Positives = 35/77 (45%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 KVY GNLG ++ AF L V GF FV F +DA+ A +A Sbjct: 12 KVYVGNLGSSASKHEIEGAFAKYGPLRNVWV-----ARNPPGFAFVEFEDRRDAEDATRA 66 Query: 386 MDGVELDGRPLRLSLAA 336 +DG G +R+ +++ Sbjct: 67 LDGTRCCGTRIRVEMSS 83
>RU17_MOUSE (Q62376) U1 small nuclear ribonucleoprotein 70 kDa (U1 SNRNP 70| kDa) (snRNP70) Length = 448 Score = 35.8 bits (81), Expect = 0.11 Identities = 15/73 (20%), Positives = 35/73 (47%) Frame = -3 Query: 578 DGTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKA 399 D ++ + + L+ FE + +++ + +G+ RG+ F+ + +D + Sbjct: 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHS 159 Query: 398 ALQAMDGVELDGR 360 A + DG ++DGR Sbjct: 160 AYKHADGKKIDGR 172
>RBM7_HUMAN (Q9Y580) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 266 Score = 35.8 bits (81), Expect = 0.11 Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 5/118 (4%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 ++ GNL V L F ++ ++ ++D G+ + F FV+F A+ + Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKD-GKPKQFAFVNFKHEVSVPYAMNLL 70 Query: 383 DGVELDGRPLRLSLAAQNPPAG-----STPSXAQSQQEKTASRGSEAEPQVXNNTSTS 225 +G++L GRP+++ + + A S P T++ S E + N TS++ Sbjct: 71 NGIKLYGRPIKIQFRSGSSHAPQDVSLSYPQHHVGNSSPTSTSPSRYERTMDNMTSSA 128
>RU17_HUMAN (P08621) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 437 Score = 35.8 bits (81), Expect = 0.11 Identities = 15/73 (20%), Positives = 35/73 (47%) Frame = -3 Query: 578 DGTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKA 399 D ++ + + L+ FE + +++ + +G+ RG+ F+ + +D + Sbjct: 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHS 159 Query: 398 ALQAMDGVELDGR 360 A + DG ++DGR Sbjct: 160 AYKHADGKKIDGR 172
>MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 346 Score = 35.8 bits (81), Expect = 0.11 Identities = 18/50 (36%), Positives = 27/50 (54%) Frame = -3 Query: 572 TYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSF 423 T K++ G L +K FE + A ++F++ T R RGFGFV+F Sbjct: 109 TKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTF 158 Score = 33.1 bits (74), Expect = 0.71 Identities = 17/48 (35%), Positives = 25/48 (52%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSF 423 K++ G L W +L+ F + V+ + T RSRGFGFV+F Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTF 69
>MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 328 Score = 35.8 bits (81), Expect = 0.11 Identities = 18/50 (36%), Positives = 27/50 (54%) Frame = -3 Query: 572 TYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSF 423 T K++ G L +K FE + A ++F++ T R RGFGFV+F Sbjct: 109 TKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTF 158 Score = 33.1 bits (74), Expect = 0.71 Identities = 17/48 (35%), Positives = 25/48 (52%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSF 423 K++ G L W +L+ F + V+ + T RSRGFGFV+F Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTF 69
>BOLL_MOUSE (Q924M5) Protein boule-like| Length = 281 Score = 35.8 bits (81), Expect = 0.11 Identities = 18/83 (21%), Positives = 40/83 (48%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 +++ G + + L+ F + +++ +R G S+G+GF++F T +DA+ LQ Sbjct: 34 RIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFITFETQEDAQKILQE 92 Query: 386 MDGVELDGRPLRLSLAAQNPPAG 318 + + + L + A + G Sbjct: 93 AEKLNYKDKKLNIGPAIRKQQVG 115
>RU17_XENTR (Q66II8) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 471 Score = 35.8 bits (81), Expect = 0.11 Identities = 15/73 (20%), Positives = 35/73 (47%) Frame = -3 Query: 578 DGTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKA 399 D ++ + + L+ FE + +++ + +G+ RG+ F+ + +D + Sbjct: 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYNKRSGKPRGYAFIEYEHERDMHS 159 Query: 398 ALQAMDGVELDGR 360 A + DG ++DGR Sbjct: 160 AYKHADGKKIDGR 172
>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 960 Score = 35.4 bits (80), Expect = 0.14 Identities = 22/41 (53%), Positives = 23/41 (56%), Gaps = 1/41 (2%) Frame = -3 Query: 458 TGRSRGFGFVSFHTIQDAKAALQAM-DGVELDGRPLRLSLA 339 TG RGFGFV F T QDAK A A+ L GR L L A Sbjct: 870 TGTHRGFGFVDFLTKQDAKRAFNALCHSTHLYGRRLVLEWA 910 Score = 32.7 bits (73), Expect = 0.93 Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Frame = -3 Query: 449 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQ-NPPAGSTPSXAQSQQEKTAS 273 S GFGFV + + A+ AL+ + G +DG L + ++ + PA + Q +++T S Sbjct: 773 SMGFGFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISERATKPAVTLARKKQVPRKQTTS 832 Query: 272 R 270 + Sbjct: 833 K 833
>GBP2_YEAST (P25555) Single-strand telomeric DNA-binding protein GBP2| (G-strand-binding protein 2) (RAP1 localization factor 6) Length = 427 Score = 35.4 bits (80), Expect = 0.14 Identities = 23/77 (29%), Positives = 42/77 (54%) Frame = -3 Query: 578 DGTYKVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKA 399 D ++V+ NL + + +LK F+ ++ A V + + G SRGFG V + T + Sbjct: 216 DNGFEVFIINLPYSMNWQSLKDMFKECGHVLRADVELDFN-GFSRGFGSVIYPTEDEMIR 274 Query: 398 ALQAMDGVELDGRPLRL 348 A+ +G+E++GR L + Sbjct: 275 AIDTFNGMEVEGRVLEV 291
>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1| protein) (Protein P11) Length = 385 Score = 35.4 bits (80), Expect = 0.14 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 4/89 (4%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSF---HTIQDAK-A 399 K++ G L + LK FE +V V+ + T RSRGFGF+++ + I +A+ A Sbjct: 25 KLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQNA 84 Query: 398 ALQAMDGVELDGRPLRLSLAAQNPPAGST 312 +DG ++ + +P AG+T Sbjct: 85 RPHKIDGRTVEPKRAVPRQEIDSPNAGAT 113 Score = 32.7 bits (73), Expect = 0.93 Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 1/80 (1%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDA-KAALQ 390 K++ G L L+ F+ +V ++ ++DTG+ RGF F+ F K LQ Sbjct: 116 KLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQ 175 Query: 389 AMDGVELDGRPLRLSLAAQN 330 ++ ++ ++A Q+ Sbjct: 176 KTHSIKNKTLDVKKAIAKQD 195
>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 952 Score = 35.4 bits (80), Expect = 0.14 Identities = 22/41 (53%), Positives = 23/41 (56%), Gaps = 1/41 (2%) Frame = -3 Query: 458 TGRSRGFGFVSFHTIQDAKAALQAM-DGVELDGRPLRLSLA 339 TG RGFGFV F T QDAK A A+ L GR L L A Sbjct: 862 TGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWA 902 Score = 33.1 bits (74), Expect = 0.71 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%) Frame = -3 Query: 449 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPL--RLSLAAQNPPAGSTPSXAQSQQEKTA 276 S GFGFV + + A+ AL+ + G +DG L R+S A P ST +++ T+ Sbjct: 765 SMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERATKPALTSTRKKQVPKKQTTS 824 Score = 29.6 bits (65), Expect = 7.9 Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 4/100 (4%) Frame = -3 Query: 551 NLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVE 372 NL G++ + F L + F +D G+ R FGF+ F + ++A+AAL Sbjct: 8 NLPNGMKEERFRQLFAAFGTLTDCSLKFTKD-GKFRKFGFIGFKSEEEAQAALNHFHRSF 66 Query: 371 LDGRPLRL----SLAAQNPPAGSTPSXAQSQQEKTASRGS 264 +D + + S + P + +S Q K S+ S Sbjct: 67 IDTTRITVEFCKSFGDPSKPRAWSKHAQKSSQPKQPSQDS 106
>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2| Length = 326 Score = 35.4 bits (80), Expect = 0.14 Identities = 15/72 (20%), Positives = 37/72 (51%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 ++ G L + + + F +V ++ ++ TG+S+GF F+ + + A+ Sbjct: 38 IFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97 Query: 383 DGVELDGRPLRL 348 +G+++ GR +R+ Sbjct: 98 NGIKIKGRTIRV 109
>U2AF2_DROME (Q24562) Splicing factor U2AF 50 kDa subunit (U2 auxiliary factor| 50 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 416 Score = 35.0 bits (79), Expect = 0.19 Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 5/78 (6%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVG-----ARVIFERDTGRSRGFGFVSFHTIQDAK 402 ++Y GN+ +GV + F Q LVG + + F F+ F +I + Sbjct: 94 RLYVGNIPFGVTEEEMMEFFNQQMHLVGLAQAAGSPVLACQINLDKNFAFLEFRSIDETT 153 Query: 401 AALQAMDGVELDGRPLRL 348 A+ A DG+ L G+ L++ Sbjct: 154 QAM-AFDGINLKGQSLKI 170
>PAB2_SCHPO (O14327) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (Poly(A)-binding protein II) (PABII) Length = 166 Score = 35.0 bits (79), Expect = 0.19 Identities = 22/83 (26%), Positives = 39/83 (46%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 VY GN+ + V L++ F + ++ ++ TG +GF ++ F AL + Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNAL-LL 115 Query: 383 DGVELDGRPLRLSLAAQNPPAGS 315 +G L RPL+++ N P S Sbjct: 116 NGSMLHERPLKVTPKRTNVPGMS 138
>BOULE_DROME (Q24207) Protein boule| Length = 228 Score = 35.0 bits (79), Expect = 0.19 Identities = 21/81 (25%), Positives = 38/81 (46%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 +++ G + L F + ++I +R G S+G+GFV+F T Q+A+ Sbjct: 34 RIFVGGISGDTTEADLTRVFSAYGTVKSTKIIVDR-AGVSKGYGFVTFETEQEAQRLQAD 92 Query: 386 MDGVELDGRPLRLSLAAQNPP 324 + V L R L ++ A + P Sbjct: 93 GECVVLRDRKLNIAPAIKKQP 113
>YG5B_YEAST (P53316) Hypothetical 89.5 kDa protein in MGA1-GCN4 intergenic| region Length = 781 Score = 35.0 bits (79), Expect = 0.19 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Frame = -3 Query: 455 GRSRGFGFVSFHTIQDAKAALQAMDGVELD-GRPLRLSLAAQNPPAGSTPSXAQSQQEKT 279 G SRG+GFVSF + DA A+ DG ++ + L +S A + S+ QSQ + + Sbjct: 597 GSSRGYGFVSFESPLDAAKAILNTDGYQVSKDQVLSVSFAQKRGNLSSSDDDDQSQTDNS 656 Query: 278 A 276 + Sbjct: 657 S 657 Score = 32.0 bits (71), Expect = 1.6 Identities = 13/70 (18%), Positives = 33/70 (47%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 ++ G + + L F ++ ++I+++ G G+GF+S+ A ++ + Sbjct: 197 IFVGGIAKSLSIGELSFLFSKYGPILSMKLIYDKTKGEPNGYGFISYPLGSQASLCIKEL 256 Query: 383 DGVELDGRPL 354 +G ++G L Sbjct: 257 NGRTVNGSTL 266
>SFRS5_HUMAN (Q13243) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Delayed-early protein HRS) Length = 272 Score = 35.0 bits (79), Expect = 0.19 Identities = 22/66 (33%), Positives = 31/66 (46%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 +V+ G L R ++ F+G + RD RGFGFV F +DA A+ Sbjct: 5 RVFIGRLNPAAREKDVERFFKGYGRI--------RDIDLKRGFGFVEFEDPRDADDAVYE 56 Query: 386 MDGVEL 369 +DG EL Sbjct: 57 LDGKEL 62
>SFRS5_MOUSE (O35326) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Delayed-early protein HRS) Length = 270 Score = 35.0 bits (79), Expect = 0.19 Identities = 22/66 (33%), Positives = 31/66 (46%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 +V+ G L R ++ F+G + RD RGFGFV F +DA A+ Sbjct: 5 RVFIGRLNPAAREKDVERFFKGYGRI--------RDIDLKRGFGFVEFEDPRDADDAVYE 56 Query: 386 MDGVEL 369 +DG EL Sbjct: 57 LDGKEL 62
>SFRS4_MOUSE (Q8VE97) Splicing factor, arginine/serine-rich 4| Length = 489 Score = 35.0 bits (79), Expect = 0.19 Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 11/96 (11%) Frame = -3 Query: 437 GFVSFHTIQDAKAALQAMDGVELDGRPLRL-----------SLAAQNPPAGSTPSXAQSQ 291 G + F + D K AL+ +DG E++GR +RL S + + S S+ Sbjct: 143 GVIEFVSYSDMKRALEKLDGTEVNGRKIRLVEDKPGSRRRRSYSRSRSHSRSRSRSRHSR 202 Query: 290 QEKTASRGSEAEPQVXNNTSTSGQFGGEMEKSNLQA 183 + ++ S S++ + S SG +S Q+ Sbjct: 203 KSRSRSGSSKSSHSKSRSRSRSGSHSRSKSRSRSQS 238
>RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 homolog 1| (hnRNP A2(A)) Length = 346 Score = 35.0 bits (79), Expect = 0.19 Identities = 22/69 (31%), Positives = 36/69 (52%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 K++ G L + +L+ +E L V+ + + RSRGFGFV+F + + AA+ A Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAM-A 68 Query: 386 MDGVELDGR 360 +DGR Sbjct: 69 TRPHTIDGR 77
>SFRS6_HUMAN (Q13247) Splicing factor, arginine/serine-rich 6 (Pre-mRNA-splicing| factor SRP55) Length = 344 Score = 35.0 bits (79), Expect = 0.19 Identities = 21/68 (30%), Positives = 32/68 (47%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 +VY G L + VR ++ F G L+ + G+GFV F +DA A+ Sbjct: 3 RVYIGRLSYNVREKDIQRFFSGYGRLL--------EVDLKNGYGFVEFEDSRDADDAVYE 54 Query: 386 MDGVELDG 363 ++G EL G Sbjct: 55 LNGKELCG 62 Score = 32.3 bits (72), Expect = 1.2 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = -3 Query: 437 GFVSFHTIQDAKAALQAMDGVELDGRPLRL 348 G + F + D K AL +DG E++GR +RL Sbjct: 149 GVIEFRSYSDMKRALDKLDGTEINGRNIRL 178
>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)| Length = 326 Score = 35.0 bits (79), Expect = 0.19 Identities = 19/73 (26%), Positives = 37/73 (50%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 ++ NLG L F + +VI + +T + +GFGFV+ ++A A+ ++ Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305 Query: 383 DGVELDGRPLRLS 345 +G L + L++S Sbjct: 306 NGYRLGDKILQVS 318
>SFRS5_RAT (Q09167) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Insulin-induced growth response protein CL-4) (Delayed-early protein HRS) Length = 269 Score = 35.0 bits (79), Expect = 0.19 Identities = 22/66 (33%), Positives = 31/66 (46%) Frame = -3 Query: 566 KVYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 387 +V+ G L R ++ F+G + RD RGFGFV F +DA A+ Sbjct: 5 RVFIGRLNPAAREKDVERFFKGYGRI--------RDIDLKRGFGFVEFEDPRDADDAVYE 56 Query: 386 MDGVEL 369 +DG EL Sbjct: 57 LDGKEL 62
>RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2| Length = 322 Score = 34.7 bits (78), Expect = 0.25 Identities = 15/72 (20%), Positives = 37/72 (51%) Frame = -3 Query: 563 VYAGNLGWGVRAXALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 384 ++ G L + + + F +V ++ ++ TG+S+GF F+ + + A+ Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 97 Query: 383 DGVELDGRPLRL 348 +G+++ GR +R+ Sbjct: 98 NGIKIKGRTIRV 109 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 97,658,511 Number of Sequences: 219361 Number of extensions: 2118158 Number of successful extensions: 6890 Number of sequences better than 10.0: 320 Number of HSP's better than 10.0 without gapping: 6336 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6878 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 5972710590 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
