ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd15g01 |
|---|---|
| Clone Library Name | barley_pub |
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor| Length = 324 Score = 58.2 bits (139), Expect(3) = 6e-18 Identities = 27/56 (48%), Positives = 37/56 (66%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQ 294 GRSRGFGF++F + + +AL M+ VEL+GRPLRL++A Q P S P S + Sbjct: 255 GRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNVAGQKAPVSSPPVVETSPE 310 Score = 37.0 bits (84), Expect = 0.056 Identities = 14/36 (38%), Positives = 27/36 (75%) Frame = -3 Query: 458 RSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLS 351 RSRGF FV+ ++++AK A++ DG ++ GR ++++ Sbjct: 153 RSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVN 188 Score = 36.6 bits (83), Expect(3) = 6e-18 Identities = 20/43 (46%), Positives = 23/43 (53%) Frame = -1 Query: 682 RTVRVNFPEVPRGGEXXXXXXXXXXXXXXXVDDGTYKVYAGNL 554 RTV+VNFPEVPRGGE V D +K+Y NL Sbjct: 183 RTVKVNFPEVPRGGEREVMSAKIRSTYQGFV-DSPHKLYVANL 224 Score = 35.4 bits (80), Expect(3) = 6e-18 Identities = 14/38 (36%), Positives = 22/38 (57%) Frame = -2 Query: 561 ATWGWGVRADALKTAFEGQPGLVGARVIFERDTGSFEG 448 A W + + L+ AF QPG + A+VI++R +G G Sbjct: 222 ANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRG 259
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 51.6 bits (122), Expect(2) = 1e-11 Identities = 21/44 (47%), Positives = 34/44 (77%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPP 330 GRSRGFGFV++ + ++ A++++DGV+L+GR +R+S A PP Sbjct: 232 GRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPP 275 Score = 46.2 bits (108), Expect = 9e-05 Identities = 25/63 (39%), Positives = 37/63 (58%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKTA 282 GRSRGFGFV+ + ++ +AA Q +G ELDGR LR++ + P S ++ + Sbjct: 125 GRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVN-SGPPPEKRENSSFRENSSFRGG 183 Query: 281 SRG 273 SRG Sbjct: 184 SRG 186 Score = 37.4 bits (85), Expect(2) = 1e-11 Identities = 16/34 (47%), Positives = 23/34 (67%) Frame = -2 Query: 549 WGVRADALKTAFEGQPGLVGARVIFERDTGSFEG 448 WGV DAL+T F Q +V A+V+++RD+G G Sbjct: 203 WGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRG 236
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 51.6 bits (122), Expect(2) = 1e-11 Identities = 21/44 (47%), Positives = 34/44 (77%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPP 330 GRSRGFGFV++ + ++ A++++DGV+L+GR +R+S A PP Sbjct: 226 GRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPP 269 Score = 47.4 bits (111), Expect = 4e-05 Identities = 25/63 (39%), Positives = 37/63 (58%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKTA 282 GRSRGFGFV+ + ++ +AA Q +G ELDGR LR++ +G P ++ + Sbjct: 125 GRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVN-------SGPPPEKRENSSFRGG 177 Query: 281 SRG 273 SRG Sbjct: 178 SRG 180 Score = 37.4 bits (85), Expect(2) = 1e-11 Identities = 16/34 (47%), Positives = 23/34 (67%) Frame = -2 Query: 549 WGVRADALKTAFEGQPGLVGARVIFERDTGSFEG 448 WGV DAL+T F Q +V A+V+++RD+G G Sbjct: 197 WGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRG 230
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 52.4 bits (124), Expect = 1e-06 Identities = 34/82 (41%), Positives = 46/82 (56%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKTA 282 GRSRGFGFV+ ++ + +AA Q +G ELDGRPLR++ A PP ++E Sbjct: 129 GRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVN-AGPPPP----------KREDGF 177 Query: 281 SRGSEAEPQVDNNTSTSGQFGG 216 SRG P+ +S SG GG Sbjct: 178 SRG----PRSSFGSSGSGYGGG 195 Score = 51.6 bits (122), Expect(2) = 2e-10 Identities = 21/44 (47%), Positives = 34/44 (77%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPP 330 GRS+GFGFV++ + Q+ + A++++DG +LDGR +R+S A PP Sbjct: 242 GRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPP 285 Score = 33.5 bits (75), Expect(2) = 2e-10 Identities = 16/34 (47%), Positives = 23/34 (67%) Frame = -2 Query: 549 WGVRADALKTAFEGQPGLVGARVIFERDTGSFEG 448 WGV AL++ F Q +V ARVI++RD+G +G Sbjct: 213 WGVDDMALESLFSEQGKVVEARVIYDRDSGRSKG 246
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein cp29) Length = 342 Score = 50.4 bits (119), Expect(2) = 5e-10 Identities = 21/46 (45%), Positives = 33/46 (71%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAG 324 GRS+GFGFV+ + Q+ + A+ +++G +LDGR +R+S A PP G Sbjct: 295 GRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARPPRG 340 Score = 48.9 bits (115), Expect = 1e-05 Identities = 31/83 (37%), Positives = 42/83 (50%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKTA 282 GRSRGFGFV+ T + +AA Q +G E +GRPLR++ A PP P +S Sbjct: 137 GRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVN--AGPPP----PKREESFSRGPR 190 Query: 281 SRGSEAEPQVDNNTSTSGQFGGE 213 S G +E + G +G E Sbjct: 191 SGGYGSERGGGYGSERGGGYGSE 213 Score = 33.1 bits (74), Expect(2) = 5e-10 Identities = 16/34 (47%), Positives = 22/34 (64%) Frame = -2 Query: 549 WGVRADALKTAFEGQPGLVGARVIFERDTGSFEG 448 WGV AL+ F Q +V ARVI++RD+G +G Sbjct: 266 WGVDDMALENLFNEQGKVVEARVIYDRDSGRSKG 299
>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)| Length = 292 Score = 49.3 bits (116), Expect(2) = 1e-09 Identities = 19/43 (44%), Positives = 33/43 (76%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNP 333 GRSRGFGFV++ + ++ A+ +++G++LDGR +R+S A + P Sbjct: 246 GRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEERP 288 Score = 47.0 bits (110), Expect = 5e-05 Identities = 32/88 (36%), Positives = 46/88 (52%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKTA 282 GRSRGFGFV+ T ++ +AA Q +G E+DGR +R++ A PA S+ + + Sbjct: 126 GRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVN--AGPAPAKRENSSFGGGRGGNS 183 Query: 281 SRGSEAEPQVDNNTSTSGQFGGEMEKSN 198 S G D N+S G GG S+ Sbjct: 184 SYGGGR----DGNSSFGGARGGRSVDSS 207 Score = 33.1 bits (74), Expect(2) = 1e-09 Identities = 15/34 (44%), Positives = 21/34 (61%) Frame = -2 Query: 549 WGVRADALKTAFEGQPGLVGARVIFERDTGSFEG 448 WGV ALK F Q +V A+V+++RD+G G Sbjct: 217 WGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRG 250
>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)| Length = 291 Score = 49.3 bits (116), Expect(2) = 1e-09 Identities = 20/43 (46%), Positives = 33/43 (76%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNP 333 GRSRGFGFV++ + ++ A+ +++GV+LDGR +R+S A + P Sbjct: 245 GRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEERP 287 Score = 47.0 bits (110), Expect = 5e-05 Identities = 32/88 (36%), Positives = 46/88 (52%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKTA 282 GRSRGFGFV+ T ++ +AA Q +G E+DGR +R++ A PA S+ + + Sbjct: 125 GRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVN--AGPAPAKRENSSFGGGRGGNS 182 Query: 281 SRGSEAEPQVDNNTSTSGQFGGEMEKSN 198 S G D N+S G GG S+ Sbjct: 183 SYGGGR----DGNSSFGGARGGRSVDSS 206 Score = 33.1 bits (74), Expect(2) = 1e-09 Identities = 15/34 (44%), Positives = 21/34 (61%) Frame = -2 Query: 549 WGVRADALKTAFEGQPGLVGARVIFERDTGSFEG 448 WGV ALK F Q +V A+V+++RD+G G Sbjct: 216 WGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRG 249
>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)| Length = 414 Score = 44.3 bits (103), Expect = 3e-04 Identities = 18/40 (45%), Positives = 27/40 (67%) Frame = -3 Query: 452 RGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNP 333 +GFG+V F ++DAK AL A+ G +D RP+RL ++ P Sbjct: 308 KGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSPRP 347 Score = 44.3 bits (103), Expect(2) = 5e-08 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 8/57 (14%) Frame = -3 Query: 458 RSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPA--------GSTPS 312 RSRG+G+V F A+ A+Q M G E+DGRP+ ++ P G TPS Sbjct: 207 RSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPS 263 Score = 32.3 bits (72), Expect(2) = 5e-08 Identities = 15/34 (44%), Positives = 20/34 (58%) Frame = -2 Query: 549 WGVRADALKTAFEGQPGLVGARVIFERDTGSFEG 448 W + + LK FE G++GARVI+ER T G Sbjct: 177 WSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRG 210
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 49.7 bits (117), Expect(2) = 9e-08 Identities = 20/44 (45%), Positives = 31/44 (70%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPP 330 GRSRGFGFV+ + + A+ A+DG L+GR +R+++A + PP Sbjct: 282 GRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERPP 325 Score = 39.3 bits (90), Expect = 0.011 Identities = 20/51 (39%), Positives = 33/51 (64%) Frame = -3 Query: 458 RSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTA 306 +SRGFGFV+ ++ +A+ A++ + +L+GR L ++ AA P GS P A Sbjct: 189 QSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAA---PRGSRPERA 236 Score = 26.2 bits (56), Expect(2) = 9e-08 Identities = 12/34 (35%), Positives = 18/34 (52%) Frame = -2 Query: 549 WGVRADALKTAFEGQPGLVGARVIFERDTGSFEG 448 W V L+ F +V ARV+++R+TG G Sbjct: 253 WDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRG 286
>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial| precursor (AtGRP2) Length = 158 Score = 47.8 bits (112), Expect(2) = 2e-07 Identities = 24/45 (53%), Positives = 31/45 (68%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPA 327 GRSRGFGFV+F+ A AA+ MDG EL+GR +R++ A P A Sbjct: 73 GRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRPSA 117 Score = 26.9 bits (58), Expect(2) = 2e-07 Identities = 13/34 (38%), Positives = 19/34 (55%) Frame = -2 Query: 549 WGVRADALKTAFEGQPGLVGARVIFERDTGSFEG 448 WG +L+ AF +V A+VI +R+TG G Sbjct: 44 WGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRG 77
>NUCL_XENLA (P20397) Nucleolin (Protein C23)| Length = 650 Score = 45.4 bits (106), Expect(2) = 4e-07 Identities = 21/39 (53%), Positives = 27/39 (69%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 345 G S+GFGFV F T +DAKAA +AM+ E+DG + L A Sbjct: 537 GASKGFGFVDFSTAEDAKAAKEAMEDGEIDGNKVTLDFA 575 Score = 44.3 bits (103), Expect = 3e-04 Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 1/56 (1%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA-AQNPPAGSTPSTAQSQ 297 GR++GF F+ F + +DAK A+ + + E++GR +RL + P G +AQS+ Sbjct: 447 GRAKGFAFIEFSSAEDAKDAMDSCNNTEIEGRSIRLEFSQGGGPQGGGRGGSAQSK 502 Score = 28.1 bits (61), Expect(2) = 4e-07 Identities = 13/29 (44%), Positives = 20/29 (68%) Frame = -2 Query: 534 DALKTAFEGQPGLVGARVIFERDTGSFEG 448 + LK AF+G V AR++ +RDTG+ +G Sbjct: 516 ETLKEAFDGS---VNARIVTDRDTGASKG 541
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 45.8 bits (107), Expect(2) = 1e-06 Identities = 20/43 (46%), Positives = 30/43 (69%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNP 333 GRSRGFGFV+ + + A+ A+DG LDGR +R+++A + P Sbjct: 187 GRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEERP 229 Score = 45.1 bits (105), Expect = 2e-04 Identities = 21/46 (45%), Positives = 34/46 (73%) Frame = -3 Query: 458 RSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGS 321 RSRGFGFV+ T+++A+ A++ ++G ++DGR L ++ AA P GS Sbjct: 94 RSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAA---PRGS 136 Score = 26.2 bits (56), Expect(2) = 1e-06 Identities = 12/34 (35%), Positives = 17/34 (50%) Frame = -2 Query: 549 WGVRADALKTAFEGQPGLVGARVIFERDTGSFEG 448 W V L+ F +V ARV+ +R+TG G Sbjct: 158 WDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRG 191
>NUCL_CHICK (P15771) Nucleolin (Protein C23)| Length = 694 Score = 43.5 bits (101), Expect = 6e-04 Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 1/60 (1%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQ-SQQEKT 285 GR +G+ FV F T +DAK AL + + E++GR +RL ++ + G+ + +QQ KT Sbjct: 495 GRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQKGNMNARGGFNQQSKT 554 Score = 43.1 bits (100), Expect(2) = 3e-06 Identities = 20/39 (51%), Positives = 27/39 (69%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 345 G S+GFGFV F + +DAKAA +AM+ E+DG + L A Sbjct: 588 GSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFA 626 Score = 35.4 bits (80), Expect = 0.16 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 1/76 (1%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKTA 282 G S+G ++ F T +A+ AL+ G E+DGR + + + +SQQE Sbjct: 405 GSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGE-----------KSQQESQK 453 Query: 281 SRGS-EAEPQVDNNTS 237 G E++ + NN S Sbjct: 454 GGGERESKTLIVNNLS 469 Score = 27.7 bits (60), Expect(2) = 3e-06 Identities = 12/29 (41%), Positives = 20/29 (68%) Frame = -2 Query: 534 DALKTAFEGQPGLVGARVIFERDTGSFEG 448 + L+ +FEG + AR++ +RDTGS +G Sbjct: 567 ETLRESFEGS---ISARIVTDRDTGSSKG 592
>NUCL_MESAU (P08199) Nucleolin (Protein C23)| Length = 713 Score = 45.1 bits (105), Expect = 2e-04 Identities = 24/59 (40%), Positives = 37/59 (62%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKT 285 G+S+G+ F+ F + +DAK AL + + +E++GR +RL L P GS A+SQ KT Sbjct: 519 GKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQG---PRGS--PNARSQPSKT 572 Score = 43.5 bits (101), Expect(2) = 3e-06 Identities = 21/46 (45%), Positives = 29/46 (63%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAG 324 G S+GFGFV F++ +DAKAA +AM+ E+DG + L A G Sbjct: 606 GSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGG 651 Score = 33.5 bits (75), Expect = 0.61 Identities = 20/77 (25%), Positives = 36/77 (46%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKTA 282 G+S+G ++ F + DA+ L+ G E+DGR + L + Q + K + Sbjct: 426 GKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK-------GQRQERTGKNS 478 Query: 281 SRGSEAEPQVDNNTSTS 231 + E++ V +N S S Sbjct: 479 TWSGESKTLVLSNLSYS 495 Score = 26.9 bits (58), Expect(2) = 3e-06 Identities = 13/29 (44%), Positives = 20/29 (68%) Frame = -2 Query: 534 DALKTAFEGQPGLVGARVIFERDTGSFEG 448 + LK +FEG V AR++ +R+TGS +G Sbjct: 585 ETLKESFEGS---VRARIVTDRETGSSKG 610
>NUCL_RAT (P13383) Nucleolin (Protein C23)| Length = 712 Score = 45.1 bits (105), Expect = 2e-04 Identities = 24/59 (40%), Positives = 37/59 (62%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKT 285 G+S+G+ F+ F + +DAK AL + + +E++GR +RL L P GS A+SQ KT Sbjct: 522 GKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQG---PRGS--PNARSQPSKT 575 Score = 43.5 bits (101), Expect(2) = 3e-06 Identities = 21/46 (45%), Positives = 29/46 (63%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAG 324 G S+GFGFV F++ +DAKAA +AM+ E+DG + L A G Sbjct: 609 GSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGG 654 Score = 34.7 bits (78), Expect = 0.28 Identities = 21/77 (27%), Positives = 36/77 (46%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKTA 282 GRS+G ++ F + DA+ L+ G E+DGR + L + Q + K + Sbjct: 429 GRSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK-------GQRQERTGKNS 481 Query: 281 SRGSEAEPQVDNNTSTS 231 + E++ V +N S S Sbjct: 482 TWSGESKTLVLSNLSYS 498 Score = 26.9 bits (58), Expect(2) = 3e-06 Identities = 13/29 (44%), Positives = 20/29 (68%) Frame = -2 Query: 534 DALKTAFEGQPGLVGARVIFERDTGSFEG 448 + LK +FEG V AR++ +R+TGS +G Sbjct: 588 ETLKESFEGS---VRARIVTDRETGSSKG 613
>NUCL_MOUSE (P09405) Nucleolin (Protein C23)| Length = 706 Score = 43.5 bits (101), Expect(2) = 3e-06 Identities = 21/46 (45%), Positives = 29/46 (63%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAG 324 G S+GFGFV F++ +DAKAA +AM+ E+DG + L A G Sbjct: 603 GSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGG 648 Score = 43.5 bits (101), Expect = 6e-04 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 9/90 (10%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPA---------GSTPST 309 G+ +G+ F+ F + +DAK AL + + +E++GR +RL L N + G + T Sbjct: 520 GKPKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGSNSRSQPSKTLFVKGLSEDT 579 Query: 308 AQSQQEKTASRGSEAEPQVDNNTSTSGQFG 219 + +++ A D T +S FG Sbjct: 580 TEETLKESFEGSVRARIVTDRETGSSKGFG 609 Score = 35.4 bits (80), Expect = 0.16 Identities = 21/77 (27%), Positives = 37/77 (48%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKTA 282 G+S+G ++ F + DA+ L+ G E+DGR + L + Q + KT+ Sbjct: 427 GKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK-------GQRQERTGKTS 479 Query: 281 SRGSEAEPQVDNNTSTS 231 + E++ V +N S S Sbjct: 480 TWSGESKTLVLSNLSYS 496 Score = 26.9 bits (58), Expect(2) = 3e-06 Identities = 13/29 (44%), Positives = 20/29 (68%) Frame = -2 Query: 534 DALKTAFEGQPGLVGARVIFERDTGSFEG 448 + LK +FEG V AR++ +R+TGS +G Sbjct: 582 ETLKESFEGS---VRARIVTDRETGSSKG 607
>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein| PUB1 (ARS consensus-binding protein ACBP-60) (Poly(U)-binding protein) (Poly uridylate-binding protein) Length = 452 Score = 50.8 bits (120), Expect = 4e-06 Identities = 31/103 (30%), Positives = 51/103 (49%) Frame = -3 Query: 518 HLKGSLAWLVPG*SSSVTPGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQ 339 +L G + W + G SRG+GFVSF + DA+ A+ +M G +L+GRPLR++ AA+ Sbjct: 187 YLSGHVMW-------DMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 239 Query: 338 NPPAGSTPSTAQSQQEKTASRGSEAEPQVDNNTSTSGQFGGEM 210 + + Q+ + Q +NN + + G M Sbjct: 240 R---DNNNNNNYQQRRNYGNNNRGGFRQYNNNNNNNMNMGMNM 279
>SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 221 Score = 50.1 bits (118), Expect = 6e-06 Identities = 27/61 (44%), Positives = 33/61 (54%) Frame = -3 Query: 455 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKTASR 276 SRGF FV FH +DA+ A+ AMDG LDGR LR+ +A P S S + S Sbjct: 54 SRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGSS 113 Query: 275 G 273 G Sbjct: 114 G 114
>NUCL_PONPY (Q5RF26) Nucleolin| Length = 711 Score = 43.5 bits (101), Expect(2) = 7e-06 Identities = 21/46 (45%), Positives = 29/46 (63%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAG 324 G S+GFGFV F++ +DAKAA +AM+ E+DG + L A G Sbjct: 608 GSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGG 653 Score = 43.5 bits (101), Expect = 6e-04 Identities = 24/59 (40%), Positives = 36/59 (61%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKT 285 G+S+G+ F+ F + +DAK AL + + E++GR +RL L P GS A+SQ KT Sbjct: 521 GKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG---PRGS--PNARSQPSKT 574 Score = 33.9 bits (76), Expect = 0.47 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 354 G+S+G ++ F T DA+ + G E+DGR + L Sbjct: 427 GKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISL 462 Score = 25.8 bits (55), Expect(2) = 7e-06 Identities = 12/29 (41%), Positives = 20/29 (68%) Frame = -2 Query: 534 DALKTAFEGQPGLVGARVIFERDTGSFEG 448 + LK +F+G V AR++ +R+TGS +G Sbjct: 587 ETLKESFDGS---VRARIVTDRETGSSKG 612
>NUCL_MACFA (Q4R4J7) Nucleolin| Length = 710 Score = 43.5 bits (101), Expect(2) = 7e-06 Identities = 21/46 (45%), Positives = 29/46 (63%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAG 324 G S+GFGFV F++ +DAKAA +AM+ E+DG + L A G Sbjct: 607 GSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGG 652 Score = 43.5 bits (101), Expect = 6e-04 Identities = 24/59 (40%), Positives = 36/59 (61%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKT 285 G+S+G+ F+ F + +DAK AL + + E++GR +RL L P GS A+SQ KT Sbjct: 520 GKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG---PRGS--PNARSQPSKT 573 Score = 33.9 bits (76), Expect = 0.47 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 354 G+S+G ++ F T DA+ + G E+DGR + L Sbjct: 426 GKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISL 461 Score = 25.8 bits (55), Expect(2) = 7e-06 Identities = 12/29 (41%), Positives = 20/29 (68%) Frame = -2 Query: 534 DALKTAFEGQPGLVGARVIFERDTGSFEG 448 + LK +F+G V AR++ +R+TGS +G Sbjct: 586 ETLKESFDGS---VRARIVTDRETGSSKG 611
>NUCL_HUMAN (P19338) Nucleolin (Protein C23)| Length = 709 Score = 43.5 bits (101), Expect(2) = 7e-06 Identities = 21/46 (45%), Positives = 29/46 (63%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAG 324 G S+GFGFV F++ +DAKAA +AM+ E+DG + L A G Sbjct: 606 GSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGG 651 Score = 43.5 bits (101), Expect = 6e-04 Identities = 24/59 (40%), Positives = 36/59 (61%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKT 285 G+S+G+ F+ F + +DAK AL + + E++GR +RL L P GS A+SQ KT Sbjct: 519 GKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG---PRGS--PNARSQPSKT 572 Score = 33.9 bits (76), Expect = 0.47 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 354 G+S+G ++ F T DA+ + G E+DGR + L Sbjct: 425 GKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISL 460 Score = 25.8 bits (55), Expect(2) = 7e-06 Identities = 12/29 (41%), Positives = 20/29 (68%) Frame = -2 Query: 534 DALKTAFEGQPGLVGARVIFERDTGSFEG 448 + LK +F+G V AR++ +R+TGS +G Sbjct: 585 ETLKESFDGS---VRARIVTDRETGSSKG 610
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 40.0 bits (92), Expect(2) = 1e-05 Identities = 18/39 (46%), Positives = 27/39 (69%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 345 GRSRGFGFV+ + + A+ +DG LDGR +R+++A Sbjct: 268 GRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVA 306 Score = 35.8 bits (81), Expect = 0.12 Identities = 15/40 (37%), Positives = 30/40 (75%) Frame = -3 Query: 458 RSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQ 339 +SRGFGFV+ T+++A+ A++ + +++GR L ++ AA+ Sbjct: 175 QSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAAR 214 Score = 28.9 bits (63), Expect(2) = 1e-05 Identities = 12/34 (35%), Positives = 19/34 (55%) Frame = -2 Query: 549 WGVRADALKTAFEGQPGLVGARVIFERDTGSFEG 448 WG+ L+ F +V ARV+++R+TG G Sbjct: 239 WGIDDARLEQLFSEHGKVVSARVVYDRETGRSRG 272
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 42.7 bits (99), Expect(2) = 1e-05 Identities = 19/43 (44%), Positives = 28/43 (65%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNP 333 GRSRGFGFV+ + + A+ +DG LDGR +R++ A + P Sbjct: 229 GRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEERP 271 Score = 41.2 bits (95), Expect = 0.003 Identities = 22/51 (43%), Positives = 32/51 (62%) Frame = -3 Query: 458 RSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTA 306 RSRGFGFV+ T+++A A++ +L+GR L ++ AA P GS P A Sbjct: 136 RSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAA---PRGSRPERA 183 Score = 26.2 bits (56), Expect(2) = 1e-05 Identities = 11/34 (32%), Positives = 18/34 (52%) Frame = -2 Query: 549 WGVRADALKTAFEGQPGLVGARVIFERDTGSFEG 448 W + L+ F +V ARV+F+R++G G Sbjct: 200 WDIDDARLEQVFSEHGKVVSARVVFDRESGRSRG 233
>SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 49.3 bits (116), Expect = 1e-05 Identities = 24/45 (53%), Positives = 29/45 (64%) Frame = -3 Query: 455 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGS 321 SRGF FV FH +DA+ A+ AMDG LDGR LR+ +A P S Sbjct: 53 SRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDS 97
>SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 49.3 bits (116), Expect = 1e-05 Identities = 24/45 (53%), Positives = 29/45 (64%) Frame = -3 Query: 455 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGS 321 SRGF FV FH +DA+ A+ AMDG LDGR LR+ +A P S Sbjct: 53 SRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDS 97
>SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) (Putative myelin regulatory factor 1) (MRF-1) Length = 220 Score = 49.3 bits (116), Expect = 1e-05 Identities = 24/45 (53%), Positives = 29/45 (64%) Frame = -3 Query: 455 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGS 321 SRGF FV FH +DA+ A+ AMDG LDGR LR+ +A P S Sbjct: 53 SRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDS 97
>SFRS2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 220 Score = 49.3 bits (116), Expect = 1e-05 Identities = 24/45 (53%), Positives = 29/45 (64%) Frame = -3 Query: 455 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGS 321 SRGF FV FH +DA+ A+ AMDG LDGR LR+ +A P S Sbjct: 53 SRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDS 97
>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 48.9 bits (115), Expect = 1e-05 Identities = 22/41 (53%), Positives = 30/41 (73%) Frame = -3 Query: 458 RSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQN 336 RSRGFGFV+F I DAK A+ AM+G +DGR +R+ A ++ Sbjct: 45 RSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKS 85
>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) Length = 172 Score = 48.9 bits (115), Expect = 1e-05 Identities = 22/41 (53%), Positives = 30/41 (73%) Frame = -3 Query: 458 RSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQN 336 RSRGFGFV+F I DAK A+ AM+G +DGR +R+ A ++ Sbjct: 45 RSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKS 85
>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 48.9 bits (115), Expect = 1e-05 Identities = 22/41 (53%), Positives = 30/41 (73%) Frame = -3 Query: 458 RSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQN 336 RSRGFGFV+F I DAK A+ AM+G +DGR +R+ A ++ Sbjct: 45 RSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKS 85
>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 48.9 bits (115), Expect = 1e-05 Identities = 22/41 (53%), Positives = 30/41 (73%) Frame = -3 Query: 458 RSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQN 336 RSRGFGFV+F I DAK A+ AM+G +DGR +R+ A ++ Sbjct: 45 RSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKS 85
>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 48.9 bits (115), Expect = 1e-05 Identities = 22/41 (53%), Positives = 30/41 (73%) Frame = -3 Query: 458 RSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQN 336 RSRGFGFV+F I DAK A+ AM+G +DGR +R+ A ++ Sbjct: 45 RSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKS 85
>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (xCIRP) Length = 163 Score = 48.5 bits (114), Expect = 2e-05 Identities = 21/41 (51%), Positives = 30/41 (73%) Frame = -3 Query: 458 RSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQN 336 RSRGFGFV+F + DAK A+ AM+G +DGR +R+ A ++ Sbjct: 44 RSRGFGFVTFENVDDAKDAMMAMNGKSVDGRQIRVDQAGKS 84
>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)| Length = 386 Score = 48.1 bits (113), Expect = 2e-05 Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 3/81 (3%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGST---PSTAQSQQE 291 G+S+G+GFVSF DA+ A+Q M G L GR +R + A + PPA + +T Q + Sbjct: 144 GKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYD 203 Query: 290 KTASRGSEAEPQVDNNTSTSG 228 + S+ S V TSG Sbjct: 204 EVVSQSSPNNCTVYCGGVTSG 224 Score = 30.0 bits (66), Expect = 6.8 Identities = 20/54 (37%), Positives = 33/54 (61%) Frame = -3 Query: 440 FVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKTAS 279 FV FH + A AAL AM+G ++ G+ ++++ A +TPS SQ++ T+S Sbjct: 50 FVEFHEHRHAAAALAAMNGRKIMGKEVKVNWA-------TTPS---SQKKDTSS 93
>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)| (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15 (p15-TIA-1)] Length = 386 Score = 48.1 bits (113), Expect = 2e-05 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 3/81 (3%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGST---PSTAQSQQE 291 G+S+G+GFVSF DA+ A+Q M G L GR +R + A + PPA + +T Q + Sbjct: 144 GKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYD 203 Query: 290 KTASRGSEAEPQVDNNTSTSG 228 + ++ S + V TSG Sbjct: 204 EVVNQSSPSNCTVYCGGVTSG 224 Score = 30.0 bits (66), Expect = 6.8 Identities = 20/54 (37%), Positives = 33/54 (61%) Frame = -3 Query: 440 FVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKTAS 279 FV FH + A AAL AM+G ++ G+ ++++ A +TPS SQ++ T+S Sbjct: 50 FVEFHEHRHAAAALAAMNGRKIMGKEVKVNWA-------TTPS---SQKKDTSS 93
>TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (RA301) Length = 288 Score = 47.8 bits (112), Expect = 3e-05 Identities = 24/61 (39%), Positives = 33/61 (54%) Frame = -3 Query: 458 RSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKTAS 279 RSRGF FV F + DAK A + +G+ELDGR +R+ + P TP + +S Sbjct: 157 RSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSS 216 Query: 278 R 276 R Sbjct: 217 R 217
>TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (Silica-induced gene 41 protein) (SIG-41) Length = 288 Score = 47.8 bits (112), Expect = 3e-05 Identities = 24/61 (39%), Positives = 33/61 (54%) Frame = -3 Query: 458 RSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKTAS 279 RSRGF FV F + DAK A + +G+ELDGR +R+ + P TP + +S Sbjct: 157 RSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSS 216 Query: 278 R 276 R Sbjct: 217 R 217
>TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) Length = 288 Score = 47.8 bits (112), Expect = 3e-05 Identities = 24/61 (39%), Positives = 33/61 (54%) Frame = -3 Query: 458 RSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKTAS 279 RSRGF FV F + DAK A + +G+ELDGR +R+ + P TP + +S Sbjct: 157 RSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSS 216 Query: 278 R 276 R Sbjct: 217 R 217
>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)| Length = 392 Score = 46.6 bits (109), Expect = 7e-05 Identities = 23/69 (33%), Positives = 40/69 (57%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKTA 282 G+S+G+GFVSF+ DA+ A+ M G L GR +R + A + PPA + ++Q + Sbjct: 152 GKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFE 211 Query: 281 SRGSEAEPQ 255 +++ P+ Sbjct: 212 DVVNQSSPK 220
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 46.6 bits (109), Expect = 7e-05 Identities = 21/56 (37%), Positives = 34/56 (60%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQ 294 GRS+G+GF++F + AK AL+ ++G EL GRP+++ + A S S S + Sbjct: 288 GRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDE 343
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 46.6 bits (109), Expect = 7e-05 Identities = 21/56 (37%), Positives = 34/56 (60%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQ 294 GRS+G+GF++F + AK AL+ ++G EL GRP+++ + A S S S + Sbjct: 288 GRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDE 343
>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)| Length = 282 Score = 46.2 bits (108), Expect = 9e-05 Identities = 22/49 (44%), Positives = 30/49 (61%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTP 315 GRSRGF FV F I D+K A++ +G+ELDGR +R+ + TP Sbjct: 157 GRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDYSITKRAHTPTP 205
>TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)| Length = 281 Score = 46.2 bits (108), Expect = 9e-05 Identities = 22/49 (44%), Positives = 30/49 (61%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTP 315 GRSRGF FV F I D+K A++ +G+ELDGR +R+ + TP Sbjct: 155 GRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDYSITKRAHTPTP 203
>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1| Length = 861 Score = 45.8 bits (107), Expect = 1e-04 Identities = 25/61 (40%), Positives = 34/61 (55%) Frame = -3 Query: 455 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKTASR 276 S GFGFV F T + A A + AMDG +DG ++L L+ + AG SQ++K A Sbjct: 685 SMGFGFVEFRTKEQATAVISAMDGTVIDGHKIQLKLSHRQGNAG-------SQEKKKAKN 737 Query: 275 G 273 G Sbjct: 738 G 738 Score = 31.2 bits (69), Expect = 3.1 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 2/85 (2%) Frame = -3 Query: 455 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKTAS- 279 +RGF FV F ++A+ A+ + GV L GR L + PA + A+ + E+ Sbjct: 777 ARGFAFVEFVLPKEAENAMDQLQGVHLLGRRLVMQ------PAEQEAANAEEELERMTKK 830 Query: 278 -RGSEAEPQVDNNTSTSGQFGGEME 207 R A ++ T +G+ +ME Sbjct: 831 VRKQAAVSEIAAMTRNAGKRKLDME 855
>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)| Length = 375 Score = 45.8 bits (107), Expect = 1e-04 Identities = 23/69 (33%), Positives = 40/69 (57%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKTA 282 G+S+G+GFVSF+ DA+ A+ M G L GR +R + A + PPA + ++Q + Sbjct: 135 GKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFE 194 Query: 281 SRGSEAEPQ 255 +++ P+ Sbjct: 195 DVVNQSSPK 203
>MRD1_NEUCR (Q7SG09) Multiple RNA-binding domain-containing protein 1| Length = 827 Score = 45.1 bits (105), Expect = 2e-04 Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 2/93 (2%) Frame = -3 Query: 539 GLTHSRRHLKGSLAWLVPG*SSSVTPGR--SRGFGFVSFHTIQDAKAALQAMDGVELDGR 366 GLT + +HL G + V + PG+ S GFGFV+F T A+AAL+ MDG LD Sbjct: 614 GLTDAFKHLDGFVQAKVKTKTDPKKPGQVLSMGFGFVAFRTKDQAQAALKVMDGQVLDAH 673 Query: 365 PLRLSLAAQNPPAGSTPSTAQSQQEKTASRGSE 267 + + + + A + + +K A++G++ Sbjct: 674 KISVKASHRGLDA-AEERRREDMAKKAANQGTK 705
>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein| 23) (RNA-binding region-containing protein 4) (Splicing factor SF2) Length = 439 Score = 44.7 bits (104), Expect = 3e-04 Identities = 20/57 (35%), Positives = 34/57 (59%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQE 291 GRS+G+GF++F + A+ AL+ ++G EL GRP+R+ + G+ + QE Sbjct: 301 GRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLDGGTDITFPDGDQE 357
>RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial precursor| Length = 212 Score = 44.3 bits (103), Expect = 3e-04 Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 4/75 (5%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNP----PAGSTPSTAQSQQ 294 GRSRG+GFV+F + A +A+ AM+G EL+G + +++A P + A+ ++ Sbjct: 69 GRSRGYGFVNFISEDSANSAISAMNGQELNGFNISVNVAKDWPSLPLSLDESIEEAEKKE 128 Query: 293 EKTASRGSEAEPQVD 249 K SR +P VD Sbjct: 129 NKMMSRSVWKDPFVD 143
>YAG3_SCHPO (Q09868) Hypothetical RNA-binding protein C12G12.03 in chromosome I| Length = 576 Score = 44.3 bits (103), Expect = 3e-04 Identities = 23/60 (38%), Positives = 34/60 (56%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKTA 282 G RG F +FH+ ++AK +Q ++G E+ GR LR+ Q PPA + +QEK A Sbjct: 270 GVFRGLAFANFHSPEEAKTVVQVLNGYEITGRRLRVEWKRQLPPA-ERERVERGKQEKRA 328
>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4| (RNA-binding protein srp-2) (CeSC35) Length = 196 Score = 43.9 bits (102), Expect = 5e-04 Identities = 21/44 (47%), Positives = 31/44 (70%) Frame = -3 Query: 458 RSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPA 327 +S+GFGFV F+ +DA+ AL DG +DGR LR++LA + P+ Sbjct: 58 QSKGFGFVRFYERRDAEHALDRTDGKLVDGRELRVTLAKYDRPS 101
>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast| precursor (PSRP-2) Length = 260 Score = 43.9 bits (102), Expect = 5e-04 Identities = 19/58 (32%), Positives = 37/58 (63%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEK 288 GRSR FGFV+ T++DA A ++ ++ E+ GR +++++ + P G +T Q++ + Sbjct: 122 GRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVNI-TEKPLEGMDIATTQAEDSQ 178 Score = 40.0 bits (92), Expect = 0.007 Identities = 19/43 (44%), Positives = 32/43 (74%), Gaps = 2/43 (4%) Frame = -3 Query: 467 TPG--RSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 345 TPG +S GFGFVSF + ++ +AA+QA++ L+G+ +R++ A Sbjct: 218 TPGTSKSNGFGFVSFSSEEEVEAAIQALNNSVLEGQKIRVNKA 260
>TRA2_DROVI (O02008) Transformer-2 sex-determining protein| Length = 272 Score = 43.9 bits (102), Expect = 5e-04 Identities = 24/76 (31%), Positives = 35/76 (46%) Frame = -3 Query: 458 RSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKTAS 279 RSRGF F+ F + DA+ A A G+E+DGR +R+ + TP + + Sbjct: 144 RSRGFCFIYFENLGDARVAKDACTGMEVDGRRIRVDYSITQRAHTPTPGVYMGRPSRPLG 203 Query: 278 RGSEAEPQVDNNTSTS 231 R S +TS S Sbjct: 204 RRSRERDYSTRDTSRS 219
>YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 in chromosome I| Length = 297 Score = 43.5 bits (101), Expect = 6e-04 Identities = 21/60 (35%), Positives = 33/60 (55%) Frame = -3 Query: 455 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKTASR 276 SRGFGF+SF T+++A +A+ ++ E GR L + A ++ P TP + SR Sbjct: 141 SRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQKAKRSRPHSPTPGKYMGYDRRRNSR 200
>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1| Length = 878 Score = 43.1 bits (100), Expect = 8e-04 Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 2/61 (3%) Frame = -3 Query: 464 PGR--SRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQE 291 PG+ S GFGF F T + A A + AM+G LDG L+L L+ + G++ + A S+++ Sbjct: 691 PGKTLSMGFGFAEFKTKEQANAVISAMEGTILDGHKLQLKLSHRQ---GTSTTNASSKKK 747 Query: 290 K 288 K Sbjct: 748 K 748 Score = 33.1 bits (74), Expect = 0.80 Identities = 16/41 (39%), Positives = 24/41 (58%) Frame = -3 Query: 455 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNP 333 +RGF FV F ++A+ A+ + GV L GR L + Q+P Sbjct: 791 ARGFAFVEFLLPKEAENAMDQLQGVHLLGRRLVMEFVEQDP 831
>RAVR1_RAT (Q5XI28) Protein raver-1| Length = 748 Score = 43.1 bits (100), Expect = 8e-04 Identities = 23/69 (33%), Positives = 35/69 (50%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKTA 282 G+ +GF + + T + A+AA Q DG+ L G LR+S A PP S + + Q Sbjct: 259 GQLKGFAVLEYETAEMAEAAQQRADGLALGGSHLRVSFCAPGPPGRSMLAALIAAQATAL 318 Query: 281 SRGSEAEPQ 255 +RG P+ Sbjct: 319 NRGKGLLPE 327
>GAR2_SCHPO (P41891) Protein gar2| Length = 500 Score = 43.1 bits (100), Expect = 8e-04 Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 10/92 (10%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNP-PAGSTPSTAQ------ 303 GRS+G+G+V F T + AKAA+ A E+DGR + L L+ NP PA P Q Sbjct: 301 GRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLS--NPRPANPQPYAQQRAGNFG 358 Query: 302 ---SQQEKTASRGSEAEPQVDNNTSTSGQFGG 216 S+ T G+ + +++ ST+ FGG Sbjct: 359 DQLSEPSDTVFVGNLSFNATEDDLSTA--FGG 388 Score = 36.6 bits (83), Expect = 0.073 Identities = 19/47 (40%), Positives = 27/47 (57%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGS 321 GR +GFG+V+F I AK ++ M+G + GRP RL + GS Sbjct: 404 GRLKGFGYVTFSDIDSAKKCVE-MNGHFIAGRPCRLDFSTPRTGGGS 449
>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1| Length = 838 Score = 43.1 bits (100), Expect = 8e-04 Identities = 20/60 (33%), Positives = 35/60 (58%) Frame = -3 Query: 455 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKTASR 276 S GFGF+ F T + A A + AMDG +DG ++L ++ + S P T++ ++K + + Sbjct: 657 SMGFGFIEFRTKEQAGAVIAAMDGAVIDGHKIQLKISHKQ---SSLPKTSKGSKKKISGK 713 Score = 30.8 bits (68), Expect = 4.0 Identities = 16/39 (41%), Positives = 22/39 (56%) Frame = -3 Query: 455 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQ 339 +RGF FV F +A+ A+ + GV L GR L + A Q Sbjct: 751 ARGFAFVEFLLPSEAENAMDQLQGVHLLGRRLVMQYAEQ 789
>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) (RNPL) Length = 157 Score = 43.1 bits (100), Expect = 8e-04 Identities = 19/41 (46%), Positives = 29/41 (70%) Frame = -3 Query: 458 RSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQN 336 RSRGFGF++F + A A++AM+G LDGR +R+ A ++ Sbjct: 45 RSRGFGFITFTNPEHASVAMRAMNGESLDGRQIRVDHAGKS 85
>TRA2_DROME (P19018) Transformer-2 sex-determining protein| Length = 264 Score = 42.7 bits (99), Expect = 0.001 Identities = 20/57 (35%), Positives = 31/57 (54%) Frame = -3 Query: 458 RSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEK 288 RSRGF F+ F + DA+AA + G+E+DGR +R+ + TP +Q + Sbjct: 136 RSRGFCFIYFEKLSDARAAKDSCSGIEVDGRRIRVDFSITQRAHTPTPGVYLGRQPR 192
>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A| Length = 166 Score = 42.7 bits (99), Expect = 0.001 Identities = 20/46 (43%), Positives = 29/46 (63%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAG 324 GRSRGFGFV+F + K A++ M+G +LDGR + ++ A G Sbjct: 46 GRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQSRGSGG 91
>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1| Length = 887 Score = 42.7 bits (99), Expect = 0.001 Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 1/57 (1%) Frame = -3 Query: 455 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA-AQNPPAGSTPSTAQSQQEK 288 S GFGFV F T + A A + AMDG +DG ++L L+ Q +G+T + + + K Sbjct: 708 SMGFGFVEFRTKEQANAVIAAMDGTVIDGHKIQLKLSHRQASQSGNTKTKSNKKSGK 764 Score = 33.5 bits (75), Expect = 0.61 Identities = 24/84 (28%), Positives = 39/84 (46%) Frame = -3 Query: 455 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKTASR 276 +RGF FV F ++A+ A+ + GV L GR L + A ++ A +E+ A Sbjct: 802 ARGFAFVEFLLPKEAENAMDQLHGVHLLGRRLVMQYAEED---------AVDAEEEIARM 852 Query: 275 GSEAEPQVDNNTSTSGQFGGEMEK 204 + QV N + + GG +K Sbjct: 853 TKKVRKQVATNEMAALRNGGGRKK 876
>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein| Length = 157 Score = 42.4 bits (98), Expect = 0.001 Identities = 20/46 (43%), Positives = 29/46 (63%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAG 324 GRSRGFGFV+F + + A++ M+G ELDGR + ++ A G Sbjct: 44 GRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITVNEAQSRGSGG 89
>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2| Length = 168 Score = 42.4 bits (98), Expect = 0.001 Identities = 21/46 (45%), Positives = 29/46 (63%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAG 324 GRSRGFGFV+F + Q A++ M+G ELDGR + ++ A G Sbjct: 46 GRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQSRGGGG 91
>GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)| Length = 142 Score = 42.4 bits (98), Expect = 0.001 Identities = 19/38 (50%), Positives = 29/38 (76%) Frame = -3 Query: 458 RSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 345 RSRGFGFV+F T + ++A++ M+G ELDGR + ++ A Sbjct: 26 RSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNEA 63
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) Length = 153 Score = 42.4 bits (98), Expect = 0.001 Identities = 19/41 (46%), Positives = 29/41 (70%) Frame = -3 Query: 458 RSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQN 336 RSRGFGF++F + A A++AM+G LDGR +R+ A ++ Sbjct: 45 RSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHAGKS 85
>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10| Length = 169 Score = 42.4 bits (98), Expect = 0.001 Identities = 21/46 (45%), Positives = 28/46 (60%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAG 324 GRSRGFGFV+F + K A+ M+G ELDGR + ++ A G Sbjct: 44 GRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTITVNEAQSRGGGG 89
>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A| Length = 169 Score = 42.0 bits (97), Expect = 0.002 Identities = 19/39 (48%), Positives = 28/39 (71%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 345 GRSRGFGFV+F + K A++ M+G +LDGR + ++ A Sbjct: 46 GRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEA 84
>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7| Length = 176 Score = 42.0 bits (97), Expect = 0.002 Identities = 20/46 (43%), Positives = 29/46 (63%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAG 324 GRSRGFGFV+F + K A++ M+G +LDGR + ++ A G Sbjct: 46 GRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSRGSGG 91
>RAVR1_HUMAN (Q8IY67) Protein raver-1| Length = 606 Score = 41.6 bits (96), Expect = 0.002 Identities = 22/69 (31%), Positives = 34/69 (49%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKTA 282 G+ +GF + + T + A+ A Q DG+ L G LR+S A PP S + + Q Sbjct: 259 GQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPPGRSMLAALIAAQATAL 318 Query: 281 SRGSEAEPQ 255 +RG P+ Sbjct: 319 NRGKGLLPE 327
>MRD1_SCHPO (O13620) Multiple RNA-binding domain-containing protein 1| Length = 833 Score = 41.6 bits (96), Expect = 0.002 Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 2/78 (2%) Frame = -3 Query: 515 LKGSLAWLVPG*SSSVTPGR--SRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAA 342 L+G L+ ++ PG+ S GFGFV F A AA+ AM+G LDG L + L+ Sbjct: 642 LEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSH 701 Query: 341 QNPPAGSTPSTAQSQQEK 288 Q A + S + K Sbjct: 702 QGVDAAAEVRKQDSSKPK 719 Score = 29.6 bits (65), Expect = 8.9 Identities = 15/38 (39%), Positives = 22/38 (57%) Frame = -3 Query: 455 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAA 342 +RGF F F T ++A A++A+ L GR L L A+ Sbjct: 760 ARGFAFAEFVTAREAANAMRALKNTHLLGRHLVLQYAS 797
>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)| Length = 169 Score = 41.2 bits (95), Expect = 0.003 Identities = 20/46 (43%), Positives = 29/46 (63%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAG 324 GRSRGFGFV+F + + A++ M+G ELDGR + ++ A G Sbjct: 44 GRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQSRGSGG 89
>RSD1_SCHPO (O13845) RNA-binding protein rsd1| Length = 604 Score = 41.2 bits (95), Expect = 0.003 Identities = 25/91 (27%), Positives = 47/91 (51%) Frame = -3 Query: 458 RSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKTAS 279 RS+GFG++ + A+ AL+ M+G +L GR +R+ L + T S+ + ++T + Sbjct: 378 RSKGFGYIQYRNPISARNALEKMNGFDLAGRNMRVCL-GNDKFTTETTSSMLKRFDETLA 436 Query: 278 RGSEAEPQVDNNTSTSGQFGGEMEKSNLQAT 186 R ++P N S++ + E + L T Sbjct: 437 RQERSQPSQRNGGSSTYESQDYREAAPLSPT 467
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 40.8 bits (94), Expect = 0.004 Identities = 18/39 (46%), Positives = 28/39 (71%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 345 G+S+GFGFVSF +DA+ A+ M+G EL+G+ + + A Sbjct: 228 GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266 Score = 35.4 bits (80), Expect = 0.16 Identities = 17/39 (43%), Positives = 27/39 (69%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 345 GRS+GFGFV F + ++A A+ M+G + +PL ++LA Sbjct: 330 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368 Score = 33.1 bits (74), Expect = 0.80 Identities = 14/30 (46%), Positives = 23/30 (76%) Frame = -3 Query: 455 SRGFGFVSFHTIQDAKAALQAMDGVELDGR 366 S+G+GFV F T + A+ A++ M+G+ L+GR Sbjct: 137 SKGYGFVHFETHEAAERAIKKMNGMLLNGR 166
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 40.8 bits (94), Expect = 0.004 Identities = 18/39 (46%), Positives = 28/39 (71%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 345 G+S+GFGFVSF +DA+ A+ M+G EL+G+ + + A Sbjct: 228 GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266 Score = 35.4 bits (80), Expect = 0.16 Identities = 17/39 (43%), Positives = 27/39 (69%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 345 GRS+GFGFV F + ++A A+ M+G + +PL ++LA Sbjct: 330 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368 Score = 30.8 bits (68), Expect = 4.0 Identities = 13/30 (43%), Positives = 22/30 (73%) Frame = -3 Query: 455 SRGFGFVSFHTIQDAKAALQAMDGVELDGR 366 S+G+GFV F T + A+ A++ M+G+ L+ R Sbjct: 137 SKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 40.8 bits (94), Expect = 0.004 Identities = 18/39 (46%), Positives = 28/39 (71%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 345 G+S+GFGFVSF +DA+ A+ M+G EL+G+ + + A Sbjct: 228 GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266 Score = 35.4 bits (80), Expect = 0.16 Identities = 17/39 (43%), Positives = 27/39 (69%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 345 GRS+GFGFV F + ++A A+ M+G + +PL ++LA Sbjct: 330 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368 Score = 31.6 bits (70), Expect = 2.3 Identities = 19/65 (29%), Positives = 35/65 (53%) Frame = -3 Query: 455 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKTASR 276 S+G+GFV F T + A+ A++ M+G+ L+ R + + +SQ+E+ A Sbjct: 137 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV-------------GRFKSQKEREAEL 183 Query: 275 GSEAE 261 G+ A+ Sbjct: 184 GARAK 188
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 40.8 bits (94), Expect = 0.004 Identities = 18/39 (46%), Positives = 28/39 (71%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 345 G+S+GFGFVSF +DA+ A+ M+G EL+G+ + + A Sbjct: 228 GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266 Score = 35.4 bits (80), Expect = 0.16 Identities = 17/39 (43%), Positives = 27/39 (69%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 345 GRS+GFGFV F + ++A A+ M+G + +PL ++LA Sbjct: 330 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368 Score = 30.8 bits (68), Expect = 4.0 Identities = 13/30 (43%), Positives = 22/30 (73%) Frame = -3 Query: 455 SRGFGFVSFHTIQDAKAALQAMDGVELDGR 366 S+G+GFV F T + A+ A++ M+G+ L+ R Sbjct: 137 SKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 40.8 bits (94), Expect = 0.004 Identities = 18/39 (46%), Positives = 28/39 (71%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 345 G+S+GFGFVSF +DA+ A+ M+G EL+G+ + + A Sbjct: 228 GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266 Score = 35.4 bits (80), Expect = 0.16 Identities = 17/39 (43%), Positives = 27/39 (69%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 345 GRS+GFGFV F + ++A A+ M+G + +PL ++LA Sbjct: 330 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368 Score = 30.8 bits (68), Expect = 4.0 Identities = 13/30 (43%), Positives = 22/30 (73%) Frame = -3 Query: 455 SRGFGFVSFHTIQDAKAALQAMDGVELDGR 366 S+G+GFV F T + A+ A++ M+G+ L+ R Sbjct: 137 SKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
>NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NOP77)| Length = 685 Score = 40.8 bits (94), Expect = 0.004 Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 4/81 (4%) Frame = -3 Query: 467 TPGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQ----S 300 T RSRGFGFVSF D K AL + +G LR+ +A + + T + Sbjct: 61 TNKRSRGFGFVSFAVEDDTKEALAKARKTKFNGHILRVDIAKRRDRSKKTSEVVEKSTPE 120 Query: 299 QQEKTASRGSEAEPQVDNNTS 237 EK + +E E D S Sbjct: 121 SSEKITGQNNEDEDDADGEDS 141 Score = 29.6 bits (65), Expect = 8.9 Identities = 13/41 (31%), Positives = 23/41 (56%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQ 339 G+ GF FV+ I + + AL+ +++DGR + + A Q Sbjct: 185 GKLCGFAFVTMKKISNCRIALENTKDLKIDGRKVAVDFAVQ 225
>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1| Length = 841 Score = 40.4 bits (93), Expect = 0.005 Identities = 21/52 (40%), Positives = 28/52 (53%) Frame = -3 Query: 455 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQS 300 S GFGFV F T + A A+ +DG LDG L+L L+ + S S +S Sbjct: 662 SMGFGFVEFRTKEQANVAISTLDGHVLDGHKLQLKLSHKQGTGTSASSIKKS 713 Score = 38.9 bits (89), Expect = 0.015 Identities = 17/41 (41%), Positives = 28/41 (68%) Frame = -3 Query: 455 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNP 333 +RGF FV F+ +++A+ A+ ++GV L GR L + A Q+P Sbjct: 756 ARGFAFVEFNLMKEAETAMSQLEGVHLLGRRLVMQYAEQDP 796
>REFP2_MOUSE (Q9JJW6) RNA and export factor-binding protein 2| Length = 218 Score = 40.4 bits (93), Expect = 0.005 Identities = 24/64 (37%), Positives = 32/64 (50%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKTA 282 GRS G V F DA A++ GV LDGRP+ + L A P+ + ++ T Sbjct: 112 GRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQIDPQRRPAQSGNRGGMTR 171 Query: 281 SRGS 270 SRGS Sbjct: 172 SRGS 175
>SCE3_SCHPO (O14369) Probable RNA-binding protein sce3| Length = 388 Score = 40.4 bits (93), Expect = 0.005 Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 1/80 (1%) Frame = -3 Query: 458 RSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA-AQNPPAGSTPSTAQSQQEKTA 282 RSRGFG+V F T AAL A+ G +L GRP+R+++A + A ST + Sbjct: 131 RSRGFGYVEFETADTLSAAL-ALSGEDLMGRPVRITVAEPRRSFAREERSTGDWVRRGPL 189 Query: 281 SRGSEAEPQVDNNTSTSGQF 222 AE + SG+F Sbjct: 190 PPAEPAESPFGKRRTNSGRF 209
>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein| Length = 157 Score = 40.4 bits (93), Expect = 0.005 Identities = 20/46 (43%), Positives = 28/46 (60%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAG 324 GRSRGFGFV+F + A++ M+G ELDGR + ++ A G Sbjct: 46 GRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVNQAQSRGGGG 91
>MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing protein 1| Length = 858 Score = 40.0 bits (92), Expect = 0.007 Identities = 20/46 (43%), Positives = 28/46 (60%) Frame = -3 Query: 455 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGST 318 S G+GFV F +I A+ A +AMDG LD L ++ A +N A +T Sbjct: 666 SMGYGFVGFKSIDAARTAQKAMDGKVLDAHTLVVTFARRNAEASTT 711 Score = 37.4 bits (85), Expect = 0.043 Identities = 21/57 (36%), Positives = 33/57 (57%) Frame = -3 Query: 455 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKT 285 +RGFGFV + T+++A++A++A+ L GR L L + A ST Q+ KT Sbjct: 758 TRGFGFVEYSTVREAQSAMEALKHTHLLGRHLVLQWSHL---ASSTQQQVDMQRSKT 811 Score = 32.3 bits (72), Expect = 1.4 Identities = 22/59 (37%), Positives = 30/59 (50%) Frame = -3 Query: 455 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKTAS 279 S+G FVSF A AA +A DG GR L L PA + + A++ +KTA+ Sbjct: 354 SKGLAFVSFSDPAHALAAYRAKDGSTFQGRLLHLL------PAVNKDALAETGSKKTAT 406
>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein| 1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B) (PABP 1-B) (xPABP1-B) Length = 633 Score = 40.0 bits (92), Expect = 0.007 Identities = 17/34 (50%), Positives = 26/34 (76%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPL 360 G+SRGFGFVSF +DA+ A+ M+G +L+G+ + Sbjct: 228 GKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAI 261 Score = 35.4 bits (80), Expect = 0.16 Identities = 17/39 (43%), Positives = 27/39 (69%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 345 GRS+GFGFV F + ++A A+ M+G + +PL ++LA Sbjct: 330 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368 Score = 30.0 bits (66), Expect = 6.8 Identities = 13/30 (43%), Positives = 21/30 (70%) Frame = -3 Query: 455 SRGFGFVSFHTIQDAKAALQAMDGVELDGR 366 S+G+GFV F T + A+ A+ M+G+ L+ R Sbjct: 137 SKGYGFVHFETQEAAERAIDKMNGMLLNDR 166
>THOC4_HUMAN (Q86V81) THO complex subunit 4 (Tho4) (Ally of AML-1 and LEF-1)| (Transcriptional coactivator Aly/REF) (bZIP-enhancing factor BEF) Length = 256 Score = 40.0 bits (92), Expect = 0.007 Identities = 22/64 (34%), Positives = 33/64 (51%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKTA 282 GRS G V F DA A++ +GV LDGRP+ + L A P+ + ++ T Sbjct: 142 GRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIDAQRRPAQSVNRGGMTR 201 Query: 281 SRGS 270 +RG+ Sbjct: 202 NRGA 205
>PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 39.7 bits (91), Expect = 0.009 Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 8/97 (8%) Frame = -3 Query: 458 RSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA-------AQNPPAGSTPSTAQS 300 + RGF FV F +DA AA+ M+ EL GR +R++LA + P S + Sbjct: 45 KHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKK 104 Query: 299 QQEKTASRGSEAE-PQVDNNTSTSGQFGGEMEKSNLQ 192 KT E E P+ + G+ + +SN Q Sbjct: 105 FSGKTLEENKEEEGPEPPKAEAQEGEPTAKKARSNPQ 141
>MRD1_CRYNE (Q5KJL5) Multiple RNA-binding domain-containing protein 1| Length = 769 Score = 39.7 bits (91), Expect = 0.009 Identities = 20/65 (30%), Positives = 35/65 (53%) Frame = -3 Query: 455 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKTASR 276 S G+GFV F T + A AL+A++G E+DG+ L + A + ++ ++ + Sbjct: 580 SMGYGFVGFKTKEAATKALKALEGFEIDGKSLEVKFAQRG-----------AEDDRETKK 628 Query: 275 GSEAE 261 G +AE Sbjct: 629 GGDAE 633 Score = 33.1 bits (74), Expect = 0.80 Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 5/80 (6%) Frame = -3 Query: 473 SVTPGRSRGFGFVSFHTIQDAKAALQAMDGVELDGR-----PLRLSLAAQNPPAGSTPST 309 S T G G F+ FH +DA AA +A+D GR P R + AGS Sbjct: 255 SQTTGEPLGTAFLQFHNAEDALAAYKALDKTIFQGRLLHVLPGRAKPGQEGAAAGSGVVD 314 Query: 308 AQSQQEKTASRGSEAEPQVD 249 + ++ RG E + +VD Sbjct: 315 GKVLGKRDEGRG-EVKSKVD 333
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 634 Score = 39.3 bits (90), Expect = 0.011 Identities = 18/40 (45%), Positives = 32/40 (80%), Gaps = 1/40 (2%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVEL-DGRPLRLSLA 345 G+S+GFGFV+F T + A+AA+QA++G ++ +G+ L ++ A Sbjct: 220 GKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARA 259 Score = 36.6 bits (83), Expect = 0.073 Identities = 16/39 (41%), Positives = 26/39 (66%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 345 GRS+GFGFV F+ +A A+ ++G + +PL ++LA Sbjct: 324 GRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALA 362 Score = 31.2 bits (69), Expect = 3.1 Identities = 12/32 (37%), Positives = 22/32 (68%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGR 366 G S+G+GFV F T + A ++ ++G+ L+G+ Sbjct: 127 GNSKGYGFVHFETEEAANTSIDKVNGMLLNGK 158
>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)| (CeSF2/ASF) Length = 258 Score = 39.3 bits (90), Expect = 0.011 Identities = 19/49 (38%), Positives = 26/49 (53%) Frame = -3 Query: 470 VTPGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAG 324 + GR F FV F +DA+ A++A DG E DGR +R+ P G Sbjct: 40 IKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFTRGVGPRG 88
>THOC4_MOUSE (O08583) THO complex subunit 4 (Tho4) (RNA and export| factor-binding protein 1) (REF1-I) (Ally of AML-1 and LEF-1) (Aly/REF) Length = 254 Score = 39.3 bits (90), Expect = 0.011 Identities = 22/64 (34%), Positives = 32/64 (50%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKTA 282 GRS G V F DA A++ +GV LDGRP+ + L P+ + ++ T Sbjct: 141 GRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIDTQRRPAQSINRGGMTR 200 Query: 281 SRGS 270 +RGS Sbjct: 201 NRGS 204
>SAP49_SCHPO (O14102) Spliceosome-associated protein 49| Length = 335 Score = 39.3 bits (90), Expect = 0.011 Identities = 18/46 (39%), Positives = 30/46 (65%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAG 324 GRS+G+GFVS+ + + A AA++AM+ L +P+ +S A + G Sbjct: 137 GRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKREGKG 182 Score = 34.7 bits (78), Expect = 0.28 Identities = 16/38 (42%), Positives = 26/38 (68%) Frame = -3 Query: 449 GFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQN 336 GFGF F QD + A Q ++ V+L G+P+R++ A+Q+ Sbjct: 53 GFGFCEFLHEQDVEYACQILNQVKLFGKPIRVNRASQD 90
>CSX1_SCHPO (O13759) RNA-binding post-transcriptional regulator csx1| Length = 632 Score = 38.9 bits (89), Expect = 0.015 Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 7/97 (7%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKTA 282 G SR +GFV F + ++ + AL M G GRPLR+S+A+ P A S Sbjct: 221 GLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVAS---PKSRASIAADSALGIVP 277 Query: 281 SRGSEAEPQVD-------NNTSTSGQFGGEMEKSNLQ 192 + S +P D N T G + + +LQ Sbjct: 278 TSTSNRQPNQDLCSMDPLNTTVFVGGLASNLSEKDLQ 314
>NGR1_YEAST (P32831) Negative growth regulatory protein NGR1 (RNA-binding| protein RBP1) Length = 672 Score = 38.9 bits (89), Expect = 0.015 Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 3/83 (3%) Frame = -3 Query: 443 GFVSFHTIQDAKAALQAMDGVELDGRPLRLSL---AAQNPPAGSTPSTAQSQQEKTASRG 273 GFV F DA+A++Q + G + G P+RLS ++ N ST A R Sbjct: 398 GFVKFEKRIDAEASIQGLQGFIVGGSPIRLSWGRPSSSNAKTNSTIMGASQYMSSNGLRA 457 Query: 272 SEAEPQVDNNTSTSGQFGGEMEK 204 A VDN+ Q+ + + Sbjct: 458 PSAASSVDNSKQILEQYAEDKRR 480
>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA| Length = 101 Score = 38.9 bits (89), Expect = 0.015 Identities = 18/39 (46%), Positives = 25/39 (64%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 345 GR RGFGFV + AA++A+DG E GR L+++ A Sbjct: 39 GRMRGFGFVELEADAEETAAIEALDGAEWMGRDLKVNKA 77
>MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing protein 1| Length = 825 Score = 38.5 bits (88), Expect = 0.019 Identities = 21/37 (56%), Positives = 24/37 (64%), Gaps = 2/37 (5%) Frame = -3 Query: 464 PGR--SRGFGFVSFHTIQDAKAALQAMDGVELDGRPL 360 PG+ S GFGFV F T A+AAL AMDG +LD L Sbjct: 637 PGKTLSMGFGFVDFRTKAQAQAALAAMDGYKLDQHEL 673 Score = 30.8 bits (68), Expect = 4.0 Identities = 15/37 (40%), Positives = 22/37 (59%) Frame = -3 Query: 455 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 345 +RGFGF F + ++A+ A+ A+ L GR L L A Sbjct: 741 ARGFGFADFVSAREAENAMDALKNTHLLGRRLVLEFA 777
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein| 1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A) (PABP 1-A) (xPABP1-A) Length = 633 Score = 38.5 bits (88), Expect = 0.019 Identities = 15/34 (44%), Positives = 26/34 (76%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPL 360 G+S+GFGFVSF +DA+ A+ M+G +++G+ + Sbjct: 228 GKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSM 261 Score = 35.4 bits (80), Expect = 0.16 Identities = 17/39 (43%), Positives = 27/39 (69%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 345 GRS+GFGFV F + ++A A+ M+G + +PL ++LA Sbjct: 330 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368 Score = 30.0 bits (66), Expect = 6.8 Identities = 13/30 (43%), Positives = 21/30 (70%) Frame = -3 Query: 455 SRGFGFVSFHTIQDAKAALQAMDGVELDGR 366 S+G+GFV F T + A+ A+ M+G+ L+ R Sbjct: 137 SKGYGFVHFETQEAAERAIDKMNGMLLNDR 166
>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)| binding protein) (ePABP) Length = 629 Score = 38.5 bits (88), Expect = 0.019 Identities = 17/39 (43%), Positives = 28/39 (71%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 345 GRSRGFGFV++ ++A+ A+ M+G E++GR + + A Sbjct: 228 GRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRA 266 Score = 34.3 bits (77), Expect = 0.36 Identities = 16/39 (41%), Positives = 26/39 (66%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 345 G S+GFGFV F + ++A A+ M+G + +PL ++LA Sbjct: 330 GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368 Score = 33.1 bits (74), Expect = 0.80 Identities = 15/30 (50%), Positives = 21/30 (70%) Frame = -3 Query: 455 SRGFGFVSFHTIQDAKAALQAMDGVELDGR 366 SRG+GFV F T + A A+Q M+G+ L+ R Sbjct: 137 SRGYGFVHFETQEAANRAIQTMNGMLLNDR 166
>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic| poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A) Length = 629 Score = 38.5 bits (88), Expect = 0.019 Identities = 17/39 (43%), Positives = 28/39 (71%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 345 GRSRGFGFV++ ++A+ A+ M+G E++GR + + A Sbjct: 228 GRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRA 266 Score = 34.3 bits (77), Expect = 0.36 Identities = 16/39 (41%), Positives = 26/39 (66%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 345 G S+GFGFV F + ++A A+ M+G + +PL ++LA Sbjct: 330 GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368 Score = 33.1 bits (74), Expect = 0.80 Identities = 15/30 (50%), Positives = 21/30 (70%) Frame = -3 Query: 455 SRGFGFVSFHTIQDAKAALQAMDGVELDGR 366 SRG+GFV F T + A A+Q M+G+ L+ R Sbjct: 137 SRGYGFVHFETHEAANRAIQTMNGMLLNDR 166
>RAVR1_MOUSE (Q9CW46) Protein raver-1| Length = 748 Score = 38.1 bits (87), Expect = 0.025 Identities = 21/69 (30%), Positives = 33/69 (47%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKTA 282 G+ +GF + + T + A+AA + DG L LR+S A PP S + + Q Sbjct: 259 GQLKGFAVLEYETAEMAEAAQERADGQALGDSHLRVSFCAPGPPGRSMLAALIAAQATAL 318 Query: 281 SRGSEAEPQ 255 +RG P+ Sbjct: 319 NRGKGLLPE 327
>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 758 Score = 38.1 bits (87), Expect = 0.025 Identities = 20/59 (33%), Positives = 31/59 (52%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKT 285 G+ RGFGFV F + +A AL+ M+ E+ GR + + A T S + +EK+ Sbjct: 150 GKMRGFGFVQFKNLLEAGKALKGMNMKEIKGRTVAVDWAVAKDKYKDTQSVSAIGEEKS 208
>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) (Glycoprotein p43) Length = 391 Score = 38.1 bits (87), Expect = 0.025 Identities = 17/40 (42%), Positives = 27/40 (67%) Frame = -3 Query: 458 RSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQ 339 +SRGF FV+F + DAK A + M+G LDG+ +++ A + Sbjct: 47 KSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATK 86
>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1| Length = 828 Score = 38.1 bits (87), Expect = 0.025 Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 2/66 (3%) Frame = -3 Query: 536 LTHSRRHLKGSLAWLVPG*SSSVTPGR--SRGFGFVSFHTIQDAKAALQAMDGVELDGRP 363 LT + + L G L V S G+ S GFGFV F + + A+ A +AMDG LDG Sbjct: 621 LTDAFKALDGFLVAQVKMKPDSKNKGKFLSMGFGFVEFSSKEAAEIAQKAMDGHVLDGHK 680 Query: 362 LRLSLA 345 L+L ++ Sbjct: 681 LQLKIS 686 Score = 32.3 bits (72), Expect = 1.4 Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 1/85 (1%) Frame = -3 Query: 455 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA-AQNPPAGSTPSTAQSQQEKTAS 279 SRGF F + + ++A+ A+ A+ G L GR L L A A A Q+ K A+ Sbjct: 742 SRGFAFAEYVSAKEAEHAMSALQGTHLLGRRLVLQYAQADASNAEEEIERMQATVSKQAA 801 Query: 278 RGSEAEPQVDNNTSTSGQFGGEMEK 204 + S A+ ++ GE E+ Sbjct: 802 QRSFADMKLAGEGKRRVDLEGEDEE 826
>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein| 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 38.1 bits (87), Expect = 0.025 Identities = 15/32 (46%), Positives = 24/32 (75%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGR 366 G+S+GFGFVS+ +DA A++ M+G E+ G+ Sbjct: 228 GKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 259 Score = 36.6 bits (83), Expect = 0.073 Identities = 17/39 (43%), Positives = 27/39 (69%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 345 GRS+GFGFV F + ++A A+ M+G + +PL ++LA Sbjct: 330 GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
>PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 37.7 bits (86), Expect = 0.033 Identities = 18/38 (47%), Positives = 25/38 (65%) Frame = -3 Query: 458 RSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 345 + RGF FV F +DA AA+ M+ EL GR +R++LA Sbjct: 45 KHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 82
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 37.7 bits (86), Expect = 0.033 Identities = 16/42 (38%), Positives = 29/42 (69%) Frame = -3 Query: 458 RSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNP 333 RS G+G+V+F QDA A+Q ++ + L G+P+R+ + ++P Sbjct: 75 RSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDP 116 Score = 34.7 bits (78), Expect = 0.28 Identities = 13/32 (40%), Positives = 23/32 (71%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGR 366 G+S+GFGFV+F DA A+++++G + D + Sbjct: 252 GKSKGFGFVNFENADDAARAVESLNGHKFDDK 283 Score = 33.9 bits (76), Expect = 0.47 Identities = 14/39 (35%), Positives = 26/39 (66%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 345 G S+G GFV+F T ++A A+ + G ++ +PL +++A Sbjct: 355 GTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIA 393
>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic| poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B) Length = 629 Score = 37.7 bits (86), Expect = 0.033 Identities = 16/32 (50%), Positives = 25/32 (78%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGR 366 GRSRGFGFV++ ++A+ A+ M+G E++GR Sbjct: 228 GRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGR 259 Score = 34.3 bits (77), Expect = 0.36 Identities = 16/39 (41%), Positives = 26/39 (66%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 345 G S+GFGFV F + ++A A+ M+G + +PL ++LA Sbjct: 330 GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368 Score = 33.1 bits (74), Expect = 0.80 Identities = 15/30 (50%), Positives = 21/30 (70%) Frame = -3 Query: 455 SRGFGFVSFHTIQDAKAALQAMDGVELDGR 366 SRG+GFV F T + A A+Q M+G+ L+ R Sbjct: 137 SRGYGFVHFETQEAANRAIQTMNGMLLNDR 166
>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5| Length = 388 Score = 37.7 bits (86), Expect = 0.033 Identities = 21/62 (33%), Positives = 32/62 (51%) Frame = -3 Query: 491 VPG*SSSVTPGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPS 312 VP V G S+GF F++F + + + AL+AM+G L R + +S A + G Sbjct: 129 VPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSKGERHG 188 Query: 311 TA 306 TA Sbjct: 189 TA 190 Score = 32.3 bits (72), Expect = 1.4 Identities = 13/37 (35%), Positives = 27/37 (72%) Frame = -3 Query: 452 RGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAA 342 +GFGFV F +DA A++ ++ ++L G+P++++ A+ Sbjct: 54 QGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKAS 90
>PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 300 Score = 37.4 bits (85), Expect = 0.043 Identities = 17/38 (44%), Positives = 25/38 (65%) Frame = -3 Query: 458 RSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 345 R RGF F+ + +DA AA+ M+ EL GR +R++LA Sbjct: 45 RHRGFAFIEYEQSEDAAAAIDNMNDSELCGRTIRVNLA 82
>EWS_MOUSE (Q61545) RNA-binding protein EWS| Length = 655 Score = 37.0 bits (84), Expect = 0.056 Identities = 18/47 (38%), Positives = 27/47 (57%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGS 321 G+ +G VS+ AKAA++ DG + G L++SLA + PP S Sbjct: 406 GKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPPMNS 452
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 37.0 bits (84), Expect = 0.056 Identities = 17/52 (32%), Positives = 30/52 (57%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTA 306 G S+G+ F++F + + AA++AM+G L RP+ +S A + G +A Sbjct: 139 GNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSA 190 Score = 36.6 bits (83), Expect = 0.073 Identities = 15/40 (37%), Positives = 30/40 (75%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAA 342 G+ +G+GFV F + +DA A++ M+ ++L G+P+R++ A+ Sbjct: 51 GQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKAS 90
>EWS_HUMAN (Q01844) RNA-binding protein EWS (EWS oncogene) (Ewing sarcoma| breakpoint region 1 protein) Length = 656 Score = 37.0 bits (84), Expect = 0.056 Identities = 18/47 (38%), Positives = 27/47 (57%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGS 321 G+ +G VS+ AKAA++ DG + G L++SLA + PP S Sbjct: 407 GKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPPMNS 453
>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) Length = 660 Score = 36.6 bits (83), Expect = 0.073 Identities = 17/39 (43%), Positives = 26/39 (66%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 345 G SRGFGFV++ ++A AL M+G + +PL ++LA Sbjct: 369 GMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALA 407 Score = 33.1 bits (74), Expect = 0.80 Identities = 19/81 (23%), Positives = 37/81 (45%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKTA 282 GRS+G+GFV F + A+AA+ ++G+ ++ + + + + +T + Sbjct: 173 GRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVY 232 Query: 281 SRGSEAEPQVDNNTSTSGQFG 219 + E D T G+FG Sbjct: 233 VKNLPKEIGEDELRKTFGKFG 253 Score = 30.8 bits (68), Expect = 4.0 Identities = 13/29 (44%), Positives = 20/29 (68%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVEL 375 G SR FGFV+F + A +A++ M+G+ L Sbjct: 266 GNSRCFGFVNFECTEAAASAVEKMNGISL 294
>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member| A1 (RNA-binding motif protein 1) Length = 496 Score = 36.6 bits (83), Expect = 0.073 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 10/72 (13%) Frame = -3 Query: 458 RSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA---------AQNPPAGS-TPST 309 +SRGF F++F DAK A + M+G L G+ +++ A + PPA S S Sbjct: 46 KSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSP 105 Query: 308 AQSQQEKTASRG 273 + S + SRG Sbjct: 106 SGSLRSARGSRG 117
>NAM8_YEAST (Q00539) Protein NAM8| Length = 523 Score = 36.6 bits (83), Expect = 0.073 Identities = 22/79 (27%), Positives = 33/79 (41%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKTA 282 G S+G+GFV F + + AL M GV L+GR +++ P + Sbjct: 202 GMSKGYGFVKFTNSDEQQLALSEMQGVFLNGRAIKVG------PTSGQQQHVSGNNDYNR 255 Query: 281 SRGSEAEPQVDNNTSTSGQ 225 S S VD+ + GQ Sbjct: 256 SSSSLNNENVDSRFLSKGQ 274
>MYEF2_MOUSE (Q8C854) Myelin expression factor 2 (MyEF-2) (MEF-2)| Length = 591 Score = 36.6 bits (83), Expect = 0.073 Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 10/102 (9%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKTA 282 G+SRG G V F + K AL+ M+ +L GRPL + + P G A Q+ T+ Sbjct: 129 GKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNI----KEDPDGENARRA-LQRTGTS 183 Query: 281 SRGSEAE----------PQVDNNTSTSGQFGGEMEKSNLQAT 186 +GS A P + NN + + ++ L +T Sbjct: 184 FQGSHASDVGSGLVNLPPSILNNPNIPPEVISNLQAGRLGST 225 Score = 32.3 bits (72), Expect = 1.4 Identities = 13/38 (34%), Positives = 25/38 (65%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 348 G+S+G G V F + + A+ A + M+G+++ GR + + L Sbjct: 550 GKSKGCGTVRFESAESAEKACRIMNGIKISGREIDVRL 587
>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 36.6 bits (83), Expect = 0.073 Identities = 16/40 (40%), Positives = 26/40 (65%) Frame = -3 Query: 458 RSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQ 339 +SRGF FV+F + DAK + M+G LDG+ +++ A + Sbjct: 47 KSRGFAFVTFESPADAKDVARDMNGKSLDGKAIKVEQATK 86
>YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c in chromosome| II Length = 473 Score = 36.2 bits (82), Expect = 0.095 Identities = 19/43 (44%), Positives = 23/43 (53%) Frame = -3 Query: 455 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPA 327 SRG+GFV F D K+AL M G RP+R+ LA A Sbjct: 227 SRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPKSKA 269 Score = 32.7 bits (73), Expect = 1.0 Identities = 20/62 (32%), Positives = 28/62 (45%) Frame = -3 Query: 470 VTPGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQE 291 + PG+ G GFV F Q A+ A+ + G L +RLS P + QSQ Sbjct: 334 IPPGK--GCGFVQFVNRQSAEIAINQLQGYPLGNSRIRLSWGRNQNPIAAPALNYQSQVS 391 Query: 290 KT 285 +T Sbjct: 392 QT 393
>PPIE_SCHMA (Q26548) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) Length = 273 Score = 36.2 bits (82), Expect = 0.095 Identities = 15/38 (39%), Positives = 26/38 (68%) Frame = -3 Query: 458 RSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 345 + RGF FV F ++DA +A+ M+ E+ GR +R+++A Sbjct: 9 KHRGFAFVEFEEVEDAMSAIDNMNESEIFGRTIRVNVA 46
>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660| (Poly(A)-binding protein At2g36660) (PABP) Length = 609 Score = 36.2 bits (82), Expect = 0.095 Identities = 16/39 (41%), Positives = 26/39 (66%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 345 G+S+GFGFV F T ++A A++ G G+PL +++A Sbjct: 341 GKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIA 379 Score = 30.0 bits (66), Expect = 6.8 Identities = 14/45 (31%), Positives = 27/45 (60%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPA 327 GRS +G+ +F + QDA A++ + L+G+ +R+ + + P A Sbjct: 62 GRSLCYGYANFLSRQDANLAIEKKNNSLLNGKMIRVMWSVRAPDA 106
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 36.2 bits (82), Expect = 0.095 Identities = 17/39 (43%), Positives = 27/39 (69%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 345 G+S+GFGFV + T ++A A+ M+ L G+PL ++LA Sbjct: 401 GKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALA 439 Score = 36.2 bits (82), Expect = 0.095 Identities = 14/42 (33%), Positives = 27/42 (64%) Frame = -3 Query: 458 RSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNP 333 RS G+ +V+FH ++D + AL ++ + GRP R+ + ++P Sbjct: 119 RSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQRDP 160
>TCG1_SCHPO (Q9HEQ9) Single-stranded TG1-3 DNA-binding protein| Length = 348 Score = 35.8 bits (81), Expect = 0.12 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 13/89 (14%) Frame = -3 Query: 458 RSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAA-------------QNPPAGST 318 R RGFGFVSF +D A++ M+G ++ L + A +N P ++ Sbjct: 256 RGRGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSAVFREDKQNDENEKNENEPIEAS 315 Query: 317 PSTAQSQQEKTASRGSEAEPQVDNNTSTS 231 S + + T + SE + + + + S Sbjct: 316 ESAPTNVSDSTEPKASEVDSEEKSGVTAS 344 Score = 35.0 bits (79), Expect = 0.21 Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 12/94 (12%) Frame = -3 Query: 449 GFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA--AQNPPA----------GSTPSTA 306 G FV+F+ +D A++ ++G LD R + + A Q P G P T+ Sbjct: 90 GIAFVTFNNQEDVDKAIETLNGKTLDDREIVVQKARPVQEQPIKDRKKSKNKNGEEPETS 149 Query: 305 QSQQEKTASRGSEAEPQVDNNTSTSGQFGGEMEK 204 S + +++GS E + + T+ S ++K Sbjct: 150 TSVENAESAKGSSDENEANTATAPSSNEANGVDK 183
>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 35.8 bits (81), Expect = 0.12 Identities = 16/40 (40%), Positives = 26/40 (65%) Frame = -3 Query: 458 RSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQ 339 +SRGF FV+ + DAK A + M+G LDG+ +++ A + Sbjct: 47 KSRGFAFVTLESPADAKDAARDMNGKSLDGKAIKVEQATK 86
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 668 Score = 35.4 bits (80), Expect = 0.16 Identities = 16/39 (41%), Positives = 27/39 (69%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 345 G SRGFGFV++ ++A A++ M+G + +PL ++LA Sbjct: 365 GLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALA 403 Score = 33.5 bits (75), Expect = 0.61 Identities = 13/42 (30%), Positives = 28/42 (66%) Frame = -3 Query: 458 RSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNP 333 RS G+ +V+F +DA A+++++ + RP+R+ L+ ++P Sbjct: 83 RSLGYAYVNFANPEDASRAMESLNYAPIRDRPIRIMLSNRDP 124 Score = 33.1 bits (74), Expect = 0.80 Identities = 20/81 (24%), Positives = 37/81 (45%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKTA 282 GRS+G+GFV F + A+AA+ ++G+ L+ + + + + + S A Sbjct: 169 GRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVY 228 Query: 281 SRGSEAEPQVDNNTSTSGQFG 219 + E D T G++G Sbjct: 229 VKNLPKEITDDELKKTFGKYG 249 Score = 30.4 bits (67), Expect = 5.2 Identities = 13/29 (44%), Positives = 20/29 (68%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVEL 375 G SR FGFV+F + + A A++ M+G+ L Sbjct: 262 GNSRSFGFVNFVSPEAAAVAVEKMNGISL 290
>ACF_MOUSE (Q5YD48) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 595 Score = 35.4 bits (80), Expect = 0.16 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 6/50 (12%) Frame = -3 Query: 476 SSVTPG------RSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 345 +S+ PG + R + FV F +DA A++A++G LDG P+ ++LA Sbjct: 252 NSIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 301
>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 960 Score = 35.4 bits (80), Expect = 0.16 Identities = 27/66 (40%), Positives = 32/66 (48%), Gaps = 1/66 (1%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAM-DGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKT 285 G RGFGFV F T QDAK A A+ L GR L L A + T Q+ + KT Sbjct: 871 GTHRGFGFVDFLTKQDAKRAFNALCHSTHLYGRRLVLEWA-------DSEVTLQALRRKT 923 Query: 284 ASRGSE 267 A+ E Sbjct: 924 AAHFHE 929 Score = 32.7 bits (73), Expect = 1.0 Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Frame = -3 Query: 455 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQ-NPPAGSTPSTAQSQQEKTAS 279 S GFGFV + + A+ AL+ + G +DG L + ++ + PA + Q +++T S Sbjct: 773 SMGFGFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISERATKPAVTLARKKQVPRKQTTS 832 Query: 278 R 276 + Sbjct: 833 K 833
>ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visual protein)| Length = 519 Score = 35.4 bits (80), Expect = 0.16 Identities = 15/45 (33%), Positives = 29/45 (64%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPA 327 G+S G+GFV++ QDA+ A+ ++G+ L + +++S A + A Sbjct: 236 GQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDA 280 Score = 30.8 bits (68), Expect = 4.0 Identities = 13/39 (33%), Positives = 24/39 (61%) Frame = -3 Query: 467 TPGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLS 351 T + +G+GFVS +A A++A++G + R L++S Sbjct: 474 TTNQCKGYGFVSMTNYDEAAMAIRALNGYTMGNRVLQVS 512
>ACF_RAT (Q923K9) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 594 Score = 35.4 bits (80), Expect = 0.16 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 6/50 (12%) Frame = -3 Query: 476 SSVTPG------RSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 345 +S+ PG + R + FV F +DA A++A++G LDG P+ ++LA Sbjct: 252 NSIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 301
>ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visual protein)| Length = 483 Score = 35.4 bits (80), Expect = 0.16 Identities = 15/45 (33%), Positives = 29/45 (64%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPA 327 G+S G+GFV++ QDA+ A+ ++G+ L + +++S A + A Sbjct: 200 GQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDA 244 Score = 30.8 bits (68), Expect = 4.0 Identities = 13/39 (33%), Positives = 24/39 (61%) Frame = -3 Query: 467 TPGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLS 351 T + +G+GFVS +A A++A++G + R L++S Sbjct: 438 TTNQCKGYGFVSMTNYDEAAMAIRALNGYTMGNRVLQVS 476
>SFRS4_MOUSE (Q8VE97) Splicing factor, arginine/serine-rich 4| Length = 489 Score = 35.4 bits (80), Expect = 0.16 Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 11/96 (11%) Frame = -3 Query: 443 GFVSFHTIQDAKAALQAMDGVELDGRPLRL-----------SLAAQNPPAGSTPSTAQSQ 297 G + F + D K AL+ +DG E++GR +RL S + + S + S+ Sbjct: 143 GVIEFVSYSDMKRALEKLDGTEVNGRKIRLVEDKPGSRRRRSYSRSRSHSRSRSRSRHSR 202 Query: 296 QEKTASRGSEAEPQVDNNTSTSGQFGGEMEKSNLQA 189 + ++ S S++ + S SG +S Q+ Sbjct: 203 KSRSRSGSSKSSHSKSRSRSRSGSHSRSKSRSRSQS 238
>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 952 Score = 35.4 bits (80), Expect = 0.16 Identities = 27/66 (40%), Positives = 31/66 (46%), Gaps = 1/66 (1%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAM-DGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKT 285 G RGFGFV F T QDAK A A+ L GR L L A + T Q+ + KT Sbjct: 863 GAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWA-------DSEVTVQTLRRKT 915 Query: 284 ASRGSE 267 A E Sbjct: 916 ARHFQE 921 Score = 33.1 bits (74), Expect = 0.80 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%) Frame = -3 Query: 455 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPL--RLSLAAQNPPAGSTPSTAQSQQEKTA 282 S GFGFV + + A+ AL+ + G +DG L R+S A P ST +++ T+ Sbjct: 765 SMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERATKPALTSTRKKQVPKKQTTS 824
>RBM7_BOVIN (Q3MHY8) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 262 Score = 35.0 bits (79), Expect = 0.21 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 2/79 (2%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKTA 282 G+ + F FV+F A+ ++G++L GRP+++ A + A S + Q Sbjct: 47 GKPKQFAFVNFKHEVSVPYAMNLLNGIKLFGRPIKIQFRAGSSHASQEVSLSYPQHHVGN 106 Query: 281 SRGSEAEPQ--VDNNTSTS 231 S + P VDN T ++ Sbjct: 107 SSPTSTSPSRTVDNMTPSA 125
>YG5B_YEAST (P53316) Hypothetical 89.5 kDa protein in MGA1-GCN4 intergenic| region Length = 781 Score = 35.0 bits (79), Expect = 0.21 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELD-GRPLRLSLAAQNPPAGSTPSTAQSQQEKT 285 G SRG+GFVSF + DA A+ DG ++ + L +S A + S+ QSQ + + Sbjct: 597 GSSRGYGFVSFESPLDAAKAILNTDGYQVSKDQVLSVSFAQKRGNLSSSDDDDQSQTDNS 656 Query: 284 A 282 + Sbjct: 657 S 657
>SFRS4_HUMAN (Q08170) Splicing factor, arginine/serine-rich 4 (Pre-mRNA-splicing| factor SRP75) (SRP001LB) Length = 494 Score = 34.7 bits (78), Expect = 0.28 Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 11/96 (11%) Frame = -3 Query: 443 GFVSFHTIQDAKAALQAMDGVELDGRPLRL-----------SLAAQNPPAGSTPSTAQSQ 297 G + F + D K AL+ +DG E++GR +RL S + + S + S+ Sbjct: 143 GVIEFVSYSDMKRALEKLDGTEVNGRKIRLVEDKPGSRRRRSYSRSRSHSRSRSRSRHSR 202 Query: 296 QEKTASRGSEAEPQVDNNTSTSGQFGGEMEKSNLQA 189 + ++ S S++ + S SG +S Q+ Sbjct: 203 KSRSRSGSSKSSHSKSRSRSRSGSRSRSKSRSRSQS 238
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 34.7 bits (78), Expect = 0.28 Identities = 23/80 (28%), Positives = 41/80 (51%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKTA 282 G+S+GFGFV F AK A+ A++G+ L+G+ + ++ + SQ E+T Sbjct: 162 GKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVA-------PHLSRKERDSQLEETK 214 Query: 281 SRGSEAEPQVDNNTSTSGQF 222 + + + N+ +T QF Sbjct: 215 AHYTNLYVKNINSETTDEQF 234 Score = 34.3 bits (77), Expect = 0.36 Identities = 21/66 (31%), Positives = 35/66 (53%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKTA 282 G+S+GFGFV F T ++A A+ + + G+PL +++A + S AQ Q + Sbjct: 358 GKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRS--QLAQQIQARNQ 415 Query: 281 SRGSEA 264 R +A Sbjct: 416 MRYQQA 421 Score = 33.9 bits (76), Expect = 0.47 Identities = 15/39 (38%), Positives = 26/39 (66%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 345 G+ +GFGFV++ +DA A++A++ EL+G L + A Sbjct: 255 GKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRA 293
>ARP2_PLAFA (P13824) Clustered-asparagine-rich protein (CARP)| Length = 443 Score = 34.3 bits (77), Expect = 0.36 Identities = 15/38 (39%), Positives = 26/38 (68%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 348 GR+ GFGFVS+ + A+ A+Q M+G ++ + L++ L Sbjct: 395 GRNSGFGFVSYDNVISAQHAIQFMNGYFVNNKYLKVQL 432
>ACF_PONPY (Q5R9H4) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 587 Score = 34.3 bits (77), Expect = 0.36 Identities = 15/36 (41%), Positives = 24/36 (66%) Frame = -3 Query: 452 RGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 345 R + FV F +DA A++A++G LDG P+ ++LA Sbjct: 266 RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 301
>RNPS1_XENLA (Q5XG24) RNA-binding protein with serine-rich domain 1| Length = 283 Score = 34.3 bits (77), Expect = 0.36 Identities = 14/38 (36%), Positives = 25/38 (65%) Frame = -3 Query: 464 PGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLS 351 P S+G+ +V F ++A+ AL+ MDG ++DG+ + S Sbjct: 176 PHLSKGYAYVEFEAPEEAEKALKHMDGGQIDGQEITAS 213
>MYEF2_HUMAN (Q9P2K5) Myelin expression factor 2 (MyEF-2) (MST156)| Length = 600 Score = 34.3 bits (77), Expect = 0.36 Identities = 16/36 (44%), Positives = 22/36 (61%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 354 G+SRG G V F + K AL+ M+ +L GRPL + Sbjct: 138 GKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNI 173 Score = 31.2 bits (69), Expect = 3.1 Identities = 13/38 (34%), Positives = 25/38 (65%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 348 G+S+G G V F + + A+ A + M+G+++ GR + + L Sbjct: 559 GKSKGCGTVRFDSPESAEKACRIMNGIKISGREIDVRL 596
>ACF_HUMAN (Q9NQ94) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 594 Score = 34.3 bits (77), Expect = 0.36 Identities = 15/36 (41%), Positives = 24/36 (66%) Frame = -3 Query: 452 RGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 345 R + FV F +DA A++A++G LDG P+ ++LA Sbjct: 266 RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 301
>RBM7_HUMAN (Q9Y580) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 266 Score = 34.3 bits (77), Expect = 0.36 Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 5/82 (6%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQ----- 297 G+ + F FV+F A+ ++G++L GRP+++ + + A S + Q Sbjct: 47 GKPKQFAFVNFKHEVSVPYAMNLLNGIKLYGRPIKIQFRSGSSHAPQDVSLSYPQHHVGN 106 Query: 296 QEKTASRGSEAEPQVDNNTSTS 231 T++ S E +DN TS++ Sbjct: 107 SSPTSTSPSRYERTMDNMTSSA 128
>SFRS7_MOUSE (Q8BL97) Splicing factor, arginine/serine-rich 7| Length = 267 Score = 30.4 bits (67), Expect(2) = 0.45 Identities = 14/39 (35%), Positives = 23/39 (58%) Frame = -3 Query: 449 GFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNP 333 GF FV F +DA+ A++ +DG + G +R+ L+ P Sbjct: 77 GFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 115 Score = 22.3 bits (46), Expect(2) = 0.45 Identities = 9/14 (64%), Positives = 9/14 (64%) Frame = -1 Query: 586 DGTYKVYAGNLGLG 545 D KVY GNLG G Sbjct: 37 DSETKVYVGNLGTG 50
>SFRS7_HUMAN (Q16629) Splicing factor, arginine/serine-rich 7 (Splicing factor| 9G8) Length = 238 Score = 30.4 bits (67), Expect(2) = 0.45 Identities = 14/39 (35%), Positives = 23/39 (58%) Frame = -3 Query: 449 GFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNP 333 GF FV F +DA+ A++ +DG + G +R+ L+ P Sbjct: 48 GFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 86 Score = 22.3 bits (46), Expect(2) = 0.45 Identities = 9/13 (69%), Positives = 9/13 (69%) Frame = -1 Query: 583 GTYKVYAGNLGLG 545 G KVY GNLG G Sbjct: 9 GETKVYVGNLGTG 21
>FOX1_CAEEL (Q10572) Sex determination protein fox-1 (Feminizing locus on X| protein 1) Length = 415 Score = 33.9 bits (76), Expect = 0.47 Identities = 15/37 (40%), Positives = 24/37 (64%) Frame = -3 Query: 455 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 345 S+GFGFV+ QDA+ A Q + G ++GR + ++ A Sbjct: 191 SKGFGFVTMERPQDAERARQELHGSMIEGRKIEVNCA 227
>RSP5_CAEEL (Q10021) Probable splicing factor, arginine/serine-rich 5| (RNA-binding protein srp-3) (CeSC35-2) Length = 208 Score = 33.9 bits (76), Expect = 0.47 Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 3/68 (4%) Frame = -3 Query: 449 GFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL-AAQNPPAGSTPSTAQSQQEKTAS-- 279 GF FV F +DA+ A +DG ++G +RL + A+ P G+ ++S + ++ S Sbjct: 36 GFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVEMARGKPRGNDRHGSRSPRRRSRSPR 95 Query: 278 RGSEAEPQ 255 R S P+ Sbjct: 96 RRSRTPPR 103
>IF34_MOUSE (Q9Z1D1) Eukaryotic translation initiation factor 3 subunit 4| (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (Eif3p42) (eIF3g) Length = 320 Score = 33.9 bits (76), Expect = 0.47 Identities = 14/32 (43%), Positives = 20/32 (62%) Frame = -3 Query: 467 TPGRSRGFGFVSFHTIQDAKAALQAMDGVELD 372 T G+S+GF F+SFH +DA A+ + G D Sbjct: 275 TTGQSKGFAFISFHRREDAARAIAGVSGFGYD 306
>IF34_HUMAN (O75821) Eukaryotic translation initiation factor 3 subunit 4| (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (eIF3g) Length = 320 Score = 33.9 bits (76), Expect = 0.47 Identities = 14/32 (43%), Positives = 20/32 (62%) Frame = -3 Query: 467 TPGRSRGFGFVSFHTIQDAKAALQAMDGVELD 372 T G+S+GF F+SFH +DA A+ + G D Sbjct: 275 TTGQSKGFAFISFHRREDAARAIAGVSGFGYD 306
>FUS_MOUSE (P56959) RNA-binding protein FUS (Pigpen protein)| Length = 518 Score = 33.5 bits (75), Expect = 0.61 Identities = 16/41 (39%), Positives = 23/41 (56%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQ 339 G+ +G VSF AKAA+ DG E G P+++S A + Sbjct: 324 GKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATR 364
>FUS_HUMAN (P35637) RNA-binding protein FUS (Oncogene FUS) (Oncogene TLS)| (Translocated in liposarcoma protein) (POMp75) (75 kDa DNA-pairing protein) Length = 526 Score = 33.5 bits (75), Expect = 0.61 Identities = 16/41 (39%), Positives = 23/41 (56%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQ 339 G+ +G VSF AKAA+ DG E G P+++S A + Sbjct: 331 GKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATR 371
>YDB2_SCHPO (Q10355) Hypothetical RNA-binding protein C22E12.02 in chromosome I| Length = 219 Score = 33.5 bits (75), Expect = 0.61 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 6/78 (7%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQN-PPAGSTPSTAQSQ---- 297 G++RGFGFVSF A + +G + RP++LS A + P T S+ Sbjct: 67 GKTRGFGFVSFKDSDQFLKAWREKNGKYIGSRPVKLSRATSDVKPNEVNEKTIDSKIRNS 126 Query: 296 -QEKTASRGSEAEPQVDN 246 +T G+ + ++ N Sbjct: 127 LYSRTIHHGNRVQKKIKN 144
>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 33.5 bits (75), Expect = 0.61 Identities = 15/39 (38%), Positives = 25/39 (64%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 345 G+S+GFGFV + T + A+ A+ + G +DG+ L + A Sbjct: 236 GKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRA 274 Score = 31.6 bits (70), Expect = 2.3 Identities = 13/38 (34%), Positives = 24/38 (63%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 348 G+ +GFG V F + ++A A+ M+G + +PL ++L Sbjct: 338 GQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTL 375
>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 33.5 bits (75), Expect = 0.61 Identities = 15/39 (38%), Positives = 25/39 (64%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 345 G+S+GFGFV + T + A+ A+ + G +DG+ L + A Sbjct: 236 GKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRA 274 Score = 31.6 bits (70), Expect = 2.3 Identities = 13/38 (34%), Positives = 24/38 (63%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 348 G+ +GFG V F + ++A A+ M+G + +PL ++L Sbjct: 338 GQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTL 375
>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 33.5 bits (75), Expect = 0.61 Identities = 15/39 (38%), Positives = 25/39 (64%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 345 G+S+GFGFV + T + A+ A+ + G +DG+ L + A Sbjct: 236 GKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRA 274 Score = 32.0 bits (71), Expect = 1.8 Identities = 13/38 (34%), Positives = 24/38 (63%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 348 G+ +GFG V F + ++A A+ M+G + +PL ++L Sbjct: 338 GQGKGFGVVCFSSFEEATKAVDEMNGRVVGSKPLHVTL 375
>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 33.5 bits (75), Expect = 0.61 Identities = 15/39 (38%), Positives = 25/39 (64%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 345 G+S+GFGFV + T + A+ A+ + G +DG+ L + A Sbjct: 236 GKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRA 274 Score = 31.6 bits (70), Expect = 2.3 Identities = 13/38 (34%), Positives = 24/38 (63%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 348 G+ +GFG V F + ++A A+ M+G + +PL ++L Sbjct: 338 GQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTL 375
>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 33.5 bits (75), Expect = 0.61 Identities = 15/39 (38%), Positives = 25/39 (64%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 345 G+S+GFGFV + T + A+ A+ + G +DG+ L + A Sbjct: 236 GKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRA 274 Score = 31.6 bits (70), Expect = 2.3 Identities = 13/38 (34%), Positives = 24/38 (63%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 348 G+ +GFG V F + ++A A+ M+G + +PL ++L Sbjct: 338 GQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTL 375
>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 33.5 bits (75), Expect = 0.61 Identities = 15/39 (38%), Positives = 25/39 (64%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 345 G+S+GFGFV + T + A+ A+ + G +DG+ L + A Sbjct: 236 GKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRA 274 Score = 31.6 bits (70), Expect = 2.3 Identities = 13/38 (34%), Positives = 24/38 (63%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 348 G+ +GFG V F + ++A A+ M+G + +PL ++L Sbjct: 338 GQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTL 375
>FUS_BOVIN (Q28009) RNA-binding protein FUS (Pigpen protein)| Length = 512 Score = 33.5 bits (75), Expect = 0.61 Identities = 16/41 (39%), Positives = 23/41 (56%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQ 339 G+ +G VSF AKAA+ DG E G P+++S A + Sbjct: 317 GKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATR 357
>GRPE_PROMM (Q7V9C9) Protein grpE (HSP-70 cofactor)| Length = 237 Score = 33.1 bits (74), Expect = 0.80 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 4/47 (8%) Frame = -3 Query: 386 GVELDGRPLRLSLA----AQNPPAGSTPSTAQSQQEKTASRGSEAEP 258 G L+GR LR +L P +G++PS+AQ + TA+ EA+P Sbjct: 186 GYHLNGRVLRHALVKVSMGPGPQSGASPSSAQPNDDSTATFQGEADP 232
>Y2082_MYCTU (Q10690) Hypothetical protein Rv2082| Length = 721 Score = 33.1 bits (74), Expect = 0.80 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 6/55 (10%) Frame = +2 Query: 470 RSKITLAPTKPGCPSNAVLSASARTPQPQVAGVNLVCPIVN------NTQASPCN 616 R +T P P P+ + S +A TP AG +L+ P+VN TQA P N Sbjct: 432 RPPVTTPPATPPTPTGPI-SGAAVTPSSPAAGGSLMSPVVNKSTAPATTQAQPSN 485
>RNPS1_RAT (Q6AYK1) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 32.7 bits (73), Expect = 1.0 Identities = 13/35 (37%), Positives = 23/35 (65%) Frame = -3 Query: 464 PGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPL 360 P S+G+ +V F +A+ AL+ MDG ++DG+ + Sbjct: 199 PHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEI 233
>RNPS1_PONPY (Q5NVM8) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 32.7 bits (73), Expect = 1.0 Identities = 13/35 (37%), Positives = 23/35 (65%) Frame = -3 Query: 464 PGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPL 360 P S+G+ +V F +A+ AL+ MDG ++DG+ + Sbjct: 199 PHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEI 233
>RNPS1_MOUSE (Q99M28) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 32.7 bits (73), Expect = 1.0 Identities = 13/35 (37%), Positives = 23/35 (65%) Frame = -3 Query: 464 PGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPL 360 P S+G+ +V F +A+ AL+ MDG ++DG+ + Sbjct: 199 PHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEI 233
>RNPS1_MACFA (Q4R5N1) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 32.7 bits (73), Expect = 1.0 Identities = 13/35 (37%), Positives = 23/35 (65%) Frame = -3 Query: 464 PGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPL 360 P S+G+ +V F +A+ AL+ MDG ++DG+ + Sbjct: 199 PHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEI 233
>RNPS1_HUMAN (Q15287) RNA-binding protein with serine-rich domain 1 (SR-related| protein LDC2) Length = 305 Score = 32.7 bits (73), Expect = 1.0 Identities = 13/35 (37%), Positives = 23/35 (65%) Frame = -3 Query: 464 PGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPL 360 P S+G+ +V F +A+ AL+ MDG ++DG+ + Sbjct: 199 PHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEI 233
>RBP1_DROME (Q02427) RNA-binding protein 1| Length = 144 Score = 32.7 bits (73), Expect = 1.0 Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 1/71 (1%) Frame = -3 Query: 551 VGVCGLTHSRRHLKGSLAWLVPG*SSSVTPGRSR-GFGFVSFHTIQDAKAALQAMDGVEL 375 VG G + S+ ++G+ A P +V R+ GF FV F +DA+ A +A+DG Sbjct: 15 VGNLGSSASKHEIEGAFAKYGP--LRNVWVARNPPGFAFVEFEDRRDAEDATRALDGTRC 72 Query: 374 DGRPLRLSLAA 342 G +R+ +++ Sbjct: 73 CGTRIRVEMSS 83
>RAVR2_HUMAN (Q9HCJ3) Protein raver-2| Length = 691 Score = 32.7 bits (73), Expect = 1.0 Identities = 15/44 (34%), Positives = 23/44 (52%) Frame = -3 Query: 449 GFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGST 318 GF V + T + A+ QA DG+ + G +++S A P ST Sbjct: 273 GFAVVEYSTAEQAEEVQQAADGMTIKGSKVQVSFCAPGAPGRST 316
>SFRS6_HUMAN (Q13247) Splicing factor, arginine/serine-rich 6 (Pre-mRNA-splicing| factor SRP55) Length = 344 Score = 32.7 bits (73), Expect = 1.0 Identities = 17/56 (30%), Positives = 29/56 (51%) Frame = -3 Query: 443 GFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKTASR 276 G + F + D K AL +DG E++GR +RL ++ P S + + ++ SR Sbjct: 149 GVIEFRSYSDMKRALDKLDGTEINGRNIRL---IEDKPRTSHRRSYSGSRSRSRSR 201
>RAVR2_MOUSE (Q7TPD6) Protein raver-2| Length = 673 Score = 32.7 bits (73), Expect = 1.0 Identities = 15/44 (34%), Positives = 22/44 (50%) Frame = -3 Query: 449 GFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGST 318 GF V + T + A+ Q DG+ + G ++LS A P ST Sbjct: 262 GFAVVEYSTAEHAEEVQQVADGITIKGSQVQLSFCAPGAPGRST 305
>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (Unwinding protein 1) (UP1) (Fragment) Length = 195 Score = 32.3 bits (72), Expect = 1.4 Identities = 15/31 (48%), Positives = 23/31 (74%) Frame = -3 Query: 458 RSRGFGFVSFHTIQDAKAALQAMDGVELDGR 366 RSRGFGFV++ T+++ AA+ A ++DGR Sbjct: 52 RSRGFGFVTYATVEEVDAAMNARPH-KVDGR 81
>RBM9_HUMAN (O43251) RNA-binding protein 9 (RNA-binding motif protein 9)| (Hexaribonucleotide-binding protein 2) (Repressor of tamoxifen transcriptional activity) Length = 390 Score = 32.3 bits (72), Expect = 1.4 Identities = 14/37 (37%), Positives = 23/37 (62%) Frame = -3 Query: 455 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 345 S+GFGFV+F DA A + + G ++GR + ++ A Sbjct: 159 SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 195
>A2BP1_HUMAN (Q9NWB1) Ataxin-2-binding protein 1| Length = 397 Score = 32.3 bits (72), Expect = 1.4 Identities = 14/37 (37%), Positives = 23/37 (62%) Frame = -3 Query: 455 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 345 S+GFGFV+F DA A + + G ++GR + ++ A Sbjct: 155 SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 191
>RBP56_HUMAN (Q92804) TATA-binding protein-associated factor 2N (RNA-binding| protein 56) (TAFII68) (TAF(II)68) Length = 592 Score = 32.3 bits (72), Expect = 1.4 Identities = 16/43 (37%), Positives = 23/43 (53%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNP 333 G+ +G VSF AKAA+ DG E G +++S A + P Sbjct: 280 GKPKGEATVSFDDPPSAKAAIDWFDGKEFHGNIIKVSFATRRP 322
>RU17_ARATH (Q42404) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 427 Score = 32.3 bits (72), Expect = 1.4 Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 34/100 (34%) Frame = -3 Query: 458 RSRGFGFVSFHTIQDAKAALQAMDGVELDG----------------RPLRL--------- 354 + +G+ F+ + +D KAA + DG ++DG RP RL Sbjct: 177 KPKGYAFIEYMHTRDMKAAYKQADGQKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTSRV 236 Query: 353 ----SLAAQNPPAGST-----PSTAQSQQEKTASRGSEAE 261 + + P G T PS + ++EK+ +G E E Sbjct: 237 GGGEEIVGEQQPQGRTSQSEEPSRPREEREKSREKGKERE 276
>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) Length = 371 Score = 32.3 bits (72), Expect = 1.4 Identities = 15/31 (48%), Positives = 23/31 (74%) Frame = -3 Query: 458 RSRGFGFVSFHTIQDAKAALQAMDGVELDGR 366 RSRGFGFV++ T+++ AA+ A ++DGR Sbjct: 52 RSRGFGFVTYATVEEVDAAMNARPH-KVDGR 81
>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (HDP) Length = 319 Score = 32.3 bits (72), Expect = 1.4 Identities = 15/31 (48%), Positives = 23/31 (74%) Frame = -3 Query: 458 RSRGFGFVSFHTIQDAKAALQAMDGVELDGR 366 RSRGFGFV++ T+++ AA+ A ++DGR Sbjct: 52 RSRGFGFVTYATVEEVDAAMNARPH-KVDGR 81
>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed) Length = 319 Score = 32.3 bits (72), Expect = 1.4 Identities = 15/31 (48%), Positives = 23/31 (74%) Frame = -3 Query: 458 RSRGFGFVSFHTIQDAKAALQAMDGVELDGR 366 RSRGFGFV++ T+++ AA+ A ++DGR Sbjct: 52 RSRGFGFVTYATVEEVDAAMNARPH-KVDGR 81
>A2BP1_MOUSE (Q9JJ43) Ataxin-2-binding protein 1| Length = 396 Score = 32.3 bits (72), Expect = 1.4 Identities = 14/37 (37%), Positives = 23/37 (62%) Frame = -3 Query: 455 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 345 S+GFGFV+F DA A + + G ++GR + ++ A Sbjct: 154 SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 190
>MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing protein 1| Length = 819 Score = 32.0 bits (71), Expect = 1.8 Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 2/37 (5%) Frame = -3 Query: 464 PGR--SRGFGFVSFHTIQDAKAALQAMDGVELDGRPL 360 PG+ S GFGF F T A+AAL M+G LD L Sbjct: 632 PGQTLSMGFGFADFKTKAQAQAALAVMNGYTLDRHTL 668 Score = 30.8 bits (68), Expect = 4.0 Identities = 15/37 (40%), Positives = 22/37 (59%) Frame = -3 Query: 455 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 345 +RGFGF F + ++A+ A+ A+ L GR L L A Sbjct: 736 ARGFGFADFVSAREAENAMDALKNTHLLGRRLVLEFA 772
>BOLL_MACFA (Q8WP23) Protein boule-like| Length = 283 Score = 32.0 bits (71), Expect = 1.8 Identities = 15/46 (32%), Positives = 25/46 (54%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAG 324 G S+G+GFV+F T +DA+ LQ + + + L + A + G Sbjct: 70 GVSKGYGFVTFETQEDAQKILQEAEKLNYKDKKLNIGPAIRKQQVG 115
>BOLL_HUMAN (Q8N9W6) Protein boule-like| Length = 283 Score = 32.0 bits (71), Expect = 1.8 Identities = 15/46 (32%), Positives = 25/46 (54%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAG 324 G S+G+GFV+F T +DA+ LQ + + + L + A + G Sbjct: 70 GVSKGYGFVTFETQEDAQKILQEAEKLNYKDKKLNIGPAIRKQQVG 115
>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) (Proline-rich Vg1 mRNA-binding protein) Length = 360 Score = 32.0 bits (71), Expect = 1.8 Identities = 24/84 (28%), Positives = 35/84 (41%) Frame = -3 Query: 467 TPGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEK 288 T +SRGFGFV F + + A LDGR + P TP Q ++ + Sbjct: 46 TTNQSRGFGFVKFKD-PNCVGTVLASRPHTLDGRNI--------DPKPCTPRGMQPERSR 96 Query: 287 TASRGSEAEPQVDNNTSTSGQFGG 216 + EP+ +N+ S GG Sbjct: 97 PREGWQQKEPRTENSRSNKIFVGG 120
>MLO3_SCHPO (Q09330) Protein mlo3| Length = 199 Score = 31.6 bits (70), Expect = 2.3 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 12/91 (13%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDG-RPLRL-----------SLAAQNPPAGST 318 GRS+G + F DA A + +G +DG R +++ SLAA+ PA + Sbjct: 93 GRSKGIATIIFSRPGDATRAYEQYEGRLVDGTRKMKVEIILDPSRQLNSLAARVSPASNA 152 Query: 317 PSTAQSQQEKTASRGSEAEPQVDNNTSTSGQ 225 +TA K++ R + + N S + Sbjct: 153 SATASKNGAKSSKRKTTRRRRTPNRPKKSAE 183
>CPO_DROME (Q01617) Protein couch potato| Length = 738 Score = 31.6 bits (70), Expect = 2.3 Identities = 21/71 (29%), Positives = 33/71 (46%) Frame = -3 Query: 443 GFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKTASRGSEA 264 GFV+FHT A+AA Q + GV D P T + + K+ ++ S+ Sbjct: 496 GFVTFHTRAGAEAAKQDLQGVRFD---------------PDMPQTIRLEFAKSNTKVSKP 540 Query: 263 EPQVDNNTSTS 231 +PQ + T+ S Sbjct: 541 KPQPNTATTAS 551
>CC020_HUMAN (Q8ND61) Protein C3orf20| Length = 904 Score = 31.6 bits (70), Expect = 2.3 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%) Frame = +2 Query: 368 SHPVPLRPWPARQPLHLVWCGRRQSQTPS-NDPVSRSKITLAPTKPGCPSN 517 S+P+ LR + A+ P HL+ + SQTP + P + TL+PT +N Sbjct: 306 SYPMILRNYKAKMPSHLMLARKGDSQTPGLHYPPTAGAQTLSPTSHPSSAN 356
>RSP6_CAEEL (Q18409) Probable splicing factor, arginine/serine-rich 6| (RNA-binding protein srp-1) (CeSRp20) Length = 179 Score = 31.6 bits (70), Expect = 2.3 Identities = 14/38 (36%), Positives = 24/38 (63%) Frame = -3 Query: 458 RSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 345 R GF FV + ++DA+ A++A+DG + G R+ L+ Sbjct: 37 RPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVELS 74
>BOLL_MOUSE (Q924M5) Protein boule-like| Length = 281 Score = 31.6 bits (70), Expect = 2.3 Identities = 14/46 (30%), Positives = 25/46 (54%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAG 324 G S+G+GF++F T +DA+ LQ + + + L + A + G Sbjct: 70 GVSKGYGFITFETQEDAQKILQEAEKLNYKDKKLNIGPAIRKQQVG 115
>PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (68 kDa poly| U-binding splicing factor) (Protein half pint) (PUF60 homolog) Length = 637 Score = 31.2 bits (69), Expect = 3.1 Identities = 14/54 (25%), Positives = 27/54 (50%) Frame = -3 Query: 458 RSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQ 297 + +GF FV + + A+ AL+ M+G + GR +++ + P A Q + Sbjct: 169 KHKGFAFVEYEIPEGAQLALEQMNGALMGGRNIKVGRPSNMPQAQQVIDEVQEE 222
>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein F41) Length = 486 Score = 31.2 bits (69), Expect = 3.1 Identities = 14/36 (38%), Positives = 25/36 (69%) Frame = -3 Query: 455 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 348 S+ FGFVS+ A+AA+Q+M+G ++ + L++ L Sbjct: 441 SKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 476
>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding protein) (EDEN-BP) Length = 486 Score = 31.2 bits (69), Expect = 3.1 Identities = 14/36 (38%), Positives = 25/36 (69%) Frame = -3 Query: 455 SRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 348 S+ FGFVS+ A+AA+Q+M+G ++ + L++ L Sbjct: 441 SKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 476
>ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 319 Score = 31.2 bits (69), Expect = 3.1 Identities = 15/31 (48%), Positives = 22/31 (70%) Frame = -3 Query: 458 RSRGFGFVSFHTIQDAKAALQAMDGVELDGR 366 RSRGFGFV++ T++ AA+ A ++DGR Sbjct: 52 RSRGFGFVTYATVEKVDAAMNARPH-KVDGR 81
>U2AF2_SCHPO (P36629) Splicing factor U2AF 59 kDa subunit (U2 auxiliary factor| 59 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF59) Length = 517 Score = 31.2 bits (69), Expect = 3.1 Identities = 14/43 (32%), Positives = 21/43 (48%) Frame = -3 Query: 473 SVTPGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 345 ++ G S+GF F F DA+ A+ +DG + G L A Sbjct: 344 NIADGSSKGFCFCEFKNPSDAEVAISGLDGKDTYGNKLHAQFA 386
>PGMP_SOLTU (Q9M4G5) Phosphoglucomutase, chloroplast precursor (EC 5.4.2.2)| (Glucose phosphomutase) (PGM) Length = 632 Score = 25.4 bits (54), Expect(2) = 3.1 Identities = 18/75 (24%), Positives = 34/75 (45%) Frame = -3 Query: 452 RGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKTASRG 273 R F++F + K + + + V P +S ++ +P S+PST+ +Q + + Sbjct: 29 RSLSFLNFPKLSSFKYSFRTISPV-----PFVVSASSVSP---SSPSTSVAQSQDLKIKS 80 Query: 272 SEAEPQVDNNTSTSG 228 +P T TSG Sbjct: 81 VPTKPIEGQKTGTSG 95 Score = 24.3 bits (51), Expect(2) = 3.1 Identities = 9/25 (36%), Positives = 14/25 (56%) Frame = -1 Query: 256 RSTITLVLQDNLEARWKRATYRQLP 182 R + + +QDN A W +A + LP Sbjct: 97 RKKVKVFMQDNYLANWIQALFNSLP 121
>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 341 Score = 30.8 bits (68), Expect = 4.0 Identities = 17/45 (37%), Positives = 25/45 (55%) Frame = -3 Query: 458 RSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAG 324 RSRGFGFV+F ++ + AA+ A +DGR + A +G Sbjct: 48 RSRGFGFVTFSSMAEVDAAMAARPH-SIDGRVVEPKRAVAREESG 91
>T55BA_BRARE (Q32PR0) Transmembrane protein 55B-A (EC 3.1.3.-) (Type I| phosphatidylinositol 4,5-bisphosphate 4-phosphatase-A) (PtdIns-4,5-P2 4-Ptase I-A) Length = 270 Score = 30.8 bits (68), Expect = 4.0 Identities = 30/105 (28%), Positives = 42/105 (40%), Gaps = 8/105 (7%) Frame = +2 Query: 308 LC*ELIQLEGSVLPD*V--GVASHPVPLRPWPA-----RQPLH-LVWCGRRQSQTPSNDP 463 +C LI +EG + V GV + P++ PA R P + L+ C + P Sbjct: 79 VCQSLISVEGKIHQHVVKCGVCNEATPIKNAPAGKKYVRCPCNCLLICKVTSQRIACPRP 138 Query: 464 VSRSKITLAPTKPGCPSNAVLSASARTPQPQVAGVNLVCPIVNNT 598 + I L P PG S P PQ AG + C +NT Sbjct: 139 YCKRIINLGPVHPGPAS----------PDPQPAGARVSCGHCSNT 173
>RBM11_HUMAN (P57052) Putative RNA-binding protein 11 (RNA-binding motif protein| 11) Length = 281 Score = 30.8 bits (68), Expect = 4.0 Identities = 12/36 (33%), Positives = 21/36 (58%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 354 G+ + FGFV F + A+ ++G+ L GRP+ + Sbjct: 47 GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINV 82
>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 353 Score = 30.8 bits (68), Expect = 4.0 Identities = 17/45 (37%), Positives = 25/45 (55%) Frame = -3 Query: 458 RSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAG 324 RSRGFGFV+F ++ + AA+ A +DGR + A +G Sbjct: 60 RSRGFGFVTFSSMAEVDAAMAARPH-SIDGRVVEPKRAVAREESG 103
>SFRS5_RAT (Q09167) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Insulin-induced growth response protein CL-4) (Delayed-early protein HRS) Length = 269 Score = 30.4 bits (67), Expect = 5.2 Identities = 14/26 (53%), Positives = 17/26 (65%) Frame = -3 Query: 452 RGFGFVSFHTIQDAKAALQAMDGVEL 375 RGFGFV F +DA A+ +DG EL Sbjct: 37 RGFGFVEFEDPRDADDAVYELDGKEL 62
>HNRPM_HUMAN (P52272) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 729 Score = 30.4 bits (67), Expect = 5.2 Identities = 13/34 (38%), Positives = 23/34 (67%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPL 360 G+S+G G V F + + A+ A + M+G++L GR + Sbjct: 688 GKSKGCGVVKFESPEVAERACRMMNGMKLSGREI 721 Score = 29.6 bits (65), Expect = 8.9 Identities = 17/56 (30%), Positives = 27/56 (48%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQ 294 G+SRG G V+F +A A+ +G L RP+ + + + P G + QQ Sbjct: 240 GKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERALPKGDFFPPERPQQ 295
>HNRPM_MOUSE (Q9D0E1) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 728 Score = 30.4 bits (67), Expect = 5.2 Identities = 13/34 (38%), Positives = 23/34 (67%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPL 360 G+S+G G V F + + A+ A + M+G++L GR + Sbjct: 687 GKSKGCGVVKFESPEVAERACRMMNGMKLSGREI 720 Score = 30.4 bits (67), Expect = 5.2 Identities = 17/56 (30%), Positives = 27/56 (48%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQ 294 G+SRG G V+F +A A+ +G L RP+ + + + P G + QQ Sbjct: 239 GKSRGIGIVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERALPKGDFFPPERPQQ 294
>HNRPM_RAT (Q62826) Heterogeneous nuclear ribonucleoprotein M (hnRNP M) (M4| protein) Length = 689 Score = 30.4 bits (67), Expect = 5.2 Identities = 13/34 (38%), Positives = 23/34 (67%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPL 360 G+S+G G V F + + A+ A + M+G++L GR + Sbjct: 648 GKSKGCGVVKFESPEVAERACRMMNGMKLSGREI 681 Score = 29.6 bits (65), Expect = 8.9 Identities = 17/56 (30%), Positives = 27/56 (48%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQ 294 G+SRG G V+F +A A+ +G L RP+ + + + P G + QQ Sbjct: 200 GKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERALPKGDFFPPERPQQ 255
>SFRS5_HUMAN (Q13243) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Delayed-early protein HRS) Length = 272 Score = 30.4 bits (67), Expect = 5.2 Identities = 14/26 (53%), Positives = 17/26 (65%) Frame = -3 Query: 452 RGFGFVSFHTIQDAKAALQAMDGVEL 375 RGFGFV F +DA A+ +DG EL Sbjct: 37 RGFGFVEFEDPRDADDAVYELDGKEL 62
>LARK_DROME (Q94901) RNA-binding protein lark| Length = 352 Score = 30.4 bits (67), Expect = 5.2 Identities = 11/36 (30%), Positives = 24/36 (66%) Frame = -3 Query: 452 RGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 345 R +GFV + D + A++ ++G +DG+PL++ ++ Sbjct: 119 RNYGFVHLDCVGDVQDAIKELNGRVVDGQPLKVQVS 154
>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Mel-N1) Length = 360 Score = 30.4 bits (67), Expect = 5.2 Identities = 17/62 (27%), Positives = 32/62 (51%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKTA 282 G SRG GF+ F +A+ A++ ++G + G +++ N P+ T SQ ++ Sbjct: 163 GISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSP 222 Query: 281 SR 276 +R Sbjct: 223 NR 224 Score = 30.0 bits (66), Expect = 6.8 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 10/79 (12%) Frame = -3 Query: 557 PGVGVCGLTHSRR-HLKGSLAWLVPG*SSSVT---------PGRSRGFGFVSFHTIQDAK 408 PG G C ++ S+ W + G +VT + +GFGFV+ +A Sbjct: 273 PGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAA 332 Query: 407 AALQAMDGVELDGRPLRLS 351 A+ +++G L R L++S Sbjct: 333 MAIASLNGYRLGDRVLQVS 351
>SFRS5_MOUSE (O35326) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Delayed-early protein HRS) Length = 270 Score = 30.4 bits (67), Expect = 5.2 Identities = 14/26 (53%), Positives = 17/26 (65%) Frame = -3 Query: 452 RGFGFVSFHTIQDAKAALQAMDGVEL 375 RGFGFV F +DA A+ +DG EL Sbjct: 37 RGFGFVEFEDPRDADDAVYELDGKEL 62
>RBM7_MOUSE (Q9CQT2) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 265 Score = 30.4 bits (67), Expect = 5.2 Identities = 14/55 (25%), Positives = 28/55 (50%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQ 297 G+ + F FV+F A+ ++G++L GRP+++ + + A S + Q Sbjct: 47 GKLKQFAFVNFKHEVSVPYAMNLLNGIKLFGRPIKIQFRSGSSHASQDASVSYPQ 101
>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)| Length = 359 Score = 30.4 bits (67), Expect = 5.2 Identities = 17/62 (27%), Positives = 32/62 (51%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKTA 282 G SRG GF+ F +A+ A++ ++G + G +++ N P+ T SQ ++ Sbjct: 163 GISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSP 222 Query: 281 SR 276 +R Sbjct: 223 NR 224 Score = 30.0 bits (66), Expect = 6.8 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 10/79 (12%) Frame = -3 Query: 557 PGVGVCGLTHSRR-HLKGSLAWLVPG*SSSVT---------PGRSRGFGFVSFHTIQDAK 408 PG G C ++ S+ W + G +VT + +GFGFV+ +A Sbjct: 272 PGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAA 331 Query: 407 AALQAMDGVELDGRPLRLS 351 A+ +++G L R L++S Sbjct: 332 MAIASLNGYRLGDRVLQVS 350
>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2| Length = 359 Score = 30.4 bits (67), Expect = 5.2 Identities = 17/62 (27%), Positives = 32/62 (51%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKTA 282 G SRG GF+ F +A+ A++ ++G + G +++ N P+ T SQ ++ Sbjct: 163 GISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSP 222 Query: 281 SR 276 +R Sbjct: 223 NR 224 Score = 30.0 bits (66), Expect = 6.8 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 10/79 (12%) Frame = -3 Query: 557 PGVGVCGLTHSRR-HLKGSLAWLVPG*SSSVT---------PGRSRGFGFVSFHTIQDAK 408 PG G C ++ S+ W + G +VT + +GFGFV+ +A Sbjct: 272 PGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAA 331 Query: 407 AALQAMDGVELDGRPLRLS 351 A+ +++G L R L++S Sbjct: 332 MAIASLNGYRLGDRVLQVS 350
>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Hel-N1) Length = 359 Score = 30.4 bits (67), Expect = 5.2 Identities = 17/62 (27%), Positives = 32/62 (51%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKTA 282 G SRG GF+ F +A+ A++ ++G + G +++ N P+ T SQ ++ Sbjct: 163 GISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSP 222 Query: 281 SR 276 +R Sbjct: 223 NR 224 Score = 30.0 bits (66), Expect = 6.8 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 10/79 (12%) Frame = -3 Query: 557 PGVGVCGLTHSRR-HLKGSLAWLVPG*SSSVT---------PGRSRGFGFVSFHTIQDAK 408 PG G C ++ S+ W + G +VT + +GFGFV+ +A Sbjct: 272 PGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAA 331 Query: 407 AALQAMDGVELDGRPLRLS 351 A+ +++G L R L++S Sbjct: 332 MAIASLNGYRLGDRVLQVS 350
>TTKB_DROME (P17789) Protein tramtrack, beta isoform (Tramtrack p69) (Repressor| protein fushi tarazu) Length = 643 Score = 30.0 bits (66), Expect = 6.8 Identities = 20/70 (28%), Positives = 32/70 (45%) Frame = -3 Query: 428 HTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKTASRGSEAEPQVD 249 H I++ AL + L G+PL +S A+ PP S S Q A+ + + Sbjct: 561 HKIENPSTALATVAAANLAGQPLGVSGASTPPPPDL--SGQNSNQSLPATSNALSTSSSS 618 Query: 248 NNTSTSGQFG 219 + +S+SG G Sbjct: 619 STSSSSGSLG 628
>MDC1_PIG (Q767L8) Mediator of DNA damage checkpoint protein 1| Length = 2042 Score = 30.0 bits (66), Expect = 6.8 Identities = 32/117 (27%), Positives = 42/117 (35%), Gaps = 20/117 (17%) Frame = -3 Query: 479 SSSVTPGRSRGFGFVSFHTIQDAKA----------------ALQAMDGVELDGRPLRLSL 348 S V PGRS+ V T + KA A VE +G P +L + Sbjct: 494 SPGVHPGRSQASATVDAITQVEEKAPPRPAVTLSEQHQVPVAWTPQTDVEAEGDPAKLPV 553 Query: 347 A----AQNPPAGSTPSTAQSQQEKTASRGSEAEPQVDNNTSTSGQFGGEMEKSNLQA 189 A+ PPAG EP V+ NTS + G ++ KS L A Sbjct: 554 VHPAEARPPPAGGH------------------EPDVEKNTSLAASAGADVRKSQLLA 592
>HNRPC_MOUSE (Q9Z204) Heterogeneous nuclear ribonucleoproteins C1/C2 (hnRNP C1 /| hnRNP C2) Length = 313 Score = 30.0 bits (66), Expect = 6.8 Identities = 14/38 (36%), Positives = 25/38 (65%) Frame = -3 Query: 452 RGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQ 339 +GF FV + ++A+AA+ DG + G+ L ++LAA+ Sbjct: 50 KGFAFVQYVNERNARAAVAGEDGRMIAGQVLDINLAAE 87
>BHLH2_MOUSE (O35185) Class B basic helix-loop-helix protein 2 (bHLHB2)| (Stimulated with retinoic acid 13) (E47 interaction protein 1) (eipl) Length = 411 Score = 30.0 bits (66), Expect = 6.8 Identities = 21/73 (28%), Positives = 33/73 (45%) Frame = -3 Query: 395 AMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKTASRGSEAEPQVDNNTSTSGQFGG 216 A V+L +P L+ ++ P P Q A G E Q ++T T +GG Sbjct: 195 APKAVDLKEKPSFLAKGSEGPGKNCVPVI----QRTFAPSGGE---QSGSDTDTDSGYGG 247 Query: 215 EMEKSNLQATASY 177 E+EK +L++ Y Sbjct: 248 ELEKGDLRSEQPY 260
>Y1711_VIBCH (Q9KRD1) UPF0313 protein VC1711| Length = 789 Score = 30.0 bits (66), Expect = 6.8 Identities = 35/112 (31%), Positives = 48/112 (42%), Gaps = 10/112 (8%) Frame = -3 Query: 524 RRHLKGSLA-WLVPG*SSS-VTPGRSRGFG------FVSFHTIQDAKAALQAMDGVEL-- 375 +RHL G L+P S VTP +SR G F + HT ++ A+ G + Sbjct: 656 KRHLIGDRPECLIPEKDSDLVTPAQSRKSGRHGANRFATKHT--HSQPGFDALRGNKSGG 713 Query: 374 DGRPLRLSLAAQNPPAGSTPSTAQSQQEKTASRGSEAEPQVDNNTSTSGQFG 219 GRP + + Q PAGS P+ ++ K A S Q N GQ G Sbjct: 714 QGRPNSGNKSNQGKPAGSKPTGSKPTANKPAGNQSARSEQ---NRGQQGQRG 762
>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)| (hnRNP 48) (HRP48.1) Length = 421 Score = 30.0 bits (66), Expect = 6.8 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 4/37 (10%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQ----AMDGVELDGRP 363 GRSRGFGFV+F + LQ +DG +D +P Sbjct: 45 GRSRGFGFVTFADPTNVNHVLQNGPHTLDGRTIDPKP 81
>GBP2_YEAST (P25555) Single-strand telomeric DNA-binding protein GBP2| (G-strand-binding protein 2) (RAP1 localization factor 6) Length = 427 Score = 30.0 bits (66), Expect = 6.8 Identities = 14/36 (38%), Positives = 22/36 (61%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 354 G SRGFG V + T + A+ +G+E++GR L + Sbjct: 256 GFSRGFGSVIYPTEDEMIRAIDTFNGMEVEGRVLEV 291
>CIPA_CLOTM (Q06851) Cellulosomal scaffolding protein A precursor (Cellulosomal| glycoprotein S1/SL) (Cellulose-integrating protein A) (Cohesin) Length = 1853 Score = 30.0 bits (66), Expect = 6.8 Identities = 18/57 (31%), Positives = 25/57 (43%) Frame = +2 Query: 446 TPSNDPVSRSKITLAPTKPGCPSNAVLSASARTPQPQVAGVNLVCPIVNNTQASPCN 616 TP+N T PT+P P+N + A TP V+G NL N+ + N Sbjct: 331 TPTNTATPTKSATATPTRPSVPTNTPTNTPANTP---VSG-NLKVEFYNSNPSDTTN 383
>HNRPC_HUMAN (P07910) Heterogeneous nuclear ribonucleoproteins C1/C2 (hnRNP C1 /| hnRNP C2) Length = 306 Score = 30.0 bits (66), Expect = 6.8 Identities = 14/38 (36%), Positives = 25/38 (65%) Frame = -3 Query: 452 RGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQ 339 +GF FV + ++A+AA+ DG + G+ L ++LAA+ Sbjct: 50 KGFAFVQYVNERNARAAVAGEDGRMIAGQVLDINLAAE 87
>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 homolog 2| (hnRNP A2(B)) Length = 358 Score = 30.0 bits (66), Expect = 6.8 Identities = 15/31 (48%), Positives = 20/31 (64%) Frame = -3 Query: 458 RSRGFGFVSFHTIQDAKAALQAMDGVELDGR 366 RSRGFGFV+F + + AA+ A +DGR Sbjct: 48 RSRGFGFVTFSCMNEVDAAMSARPHT-IDGR 77
>CAC1A_RABIT (P27884) Voltage-dependent P/Q-type calcium channel alpha-1A subunit| (Voltage-gated calcium channel alpha subunit Cav2.1) (Calcium channel, L type, alpha-1 polypeptide isoform 4) (Brain calcium channel I) (BI) Length = 2424 Score = 30.0 bits (66), Expect = 6.8 Identities = 14/36 (38%), Positives = 20/36 (55%) Frame = -3 Query: 350 LAAQNPPAGSTPSTAQSQQEKTASRGSEAEPQVDNN 243 + + PAG TP+TA + Q TASR + P +N Sbjct: 1108 MGSSTDPAGPTPATAANPQNSTASRRTPNNPGNPSN 1143
>RU17_XENTR (Q66II8) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 471 Score = 29.6 bits (65), Expect = 8.9 Identities = 11/32 (34%), Positives = 20/32 (62%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGR 366 G+ RG+ F+ + +D +A + DG ++DGR Sbjct: 141 GKPRGYAFIEYEHERDMHSAYKHADGKKIDGR 172
>RU17_XENLA (P09406) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 471 Score = 29.6 bits (65), Expect = 8.9 Identities = 11/32 (34%), Positives = 20/32 (62%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGR 366 G+ RG+ F+ + +D +A + DG ++DGR Sbjct: 144 GKPRGYAFIEYEHERDMHSAYKHADGKKIDGR 175
>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 373 Score = 29.6 bits (65), Expect = 8.9 Identities = 16/62 (25%), Positives = 32/62 (51%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKTA 282 G SRG GF+ F +A+ A++ ++G + G +++ N P+ + SQ ++ Sbjct: 163 GVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSP 222 Query: 281 SR 276 +R Sbjct: 223 NR 224
>HNRPC_XENLA (P19600) Heterogeneous nuclear ribonucleoprotein C (hnRNP core| protein C) Length = 282 Score = 29.6 bits (65), Expect = 8.9 Identities = 14/38 (36%), Positives = 23/38 (60%) Frame = -3 Query: 452 RGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQ 339 +GF FV F + A+ A+ DG + G+ L ++LAA+ Sbjct: 51 KGFAFVQFSNERTARTAVAGEDGRMIAGQVLDINLAAE 88
>RU17_MOUSE (Q62376) U1 small nuclear ribonucleoprotein 70 kDa (U1 SNRNP 70| kDa) (snRNP70) Length = 448 Score = 29.6 bits (65), Expect = 8.9 Identities = 11/32 (34%), Positives = 20/32 (62%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGR 366 G+ RG+ F+ + +D +A + DG ++DGR Sbjct: 141 GKPRGYAFIEYEHERDMHSAYKHADGKKIDGR 172
>NU214_HUMAN (P35658) Nuclear pore complex protein Nup214 (Nucleoporin Nup214)| (214 kDa nucleoporin) (CAN protein) Length = 2090 Score = 29.6 bits (65), Expect = 8.9 Identities = 22/69 (31%), Positives = 29/69 (42%) Frame = -3 Query: 428 HTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKTASRGSEAEPQVD 249 H + AA QA G SL P+G TP++ Q AS ++ E V Sbjct: 1152 HPVLTPVAANQAKQG----------SLINSLKPSGPTPASGQLSSGDKASGTAKIETAVT 1201 Query: 248 NNTSTSGQF 222 + S SGQF Sbjct: 1202 STPSASGQF 1210
>TM55B_MACFA (Q4R6W2) Transmembrane protein 55B (EC 3.1.3.-) (Type I| phosphatidylinositol 4,5-bisphosphate 4-phosphatase) (PtdIns-4,5-P2 4-Ptase I) Length = 284 Score = 29.6 bits (65), Expect = 8.9 Identities = 29/105 (27%), Positives = 42/105 (40%), Gaps = 8/105 (7%) Frame = +2 Query: 308 LC*ELIQLEGSVLPD*V--GVASHPVPLRPWP-----ARQPLH-LVWCGRRQSQTPSNDP 463 +C LI +EG + V GV + P++ P R P + L+ C + P Sbjct: 93 VCQSLINVEGKMHQHVVKCGVCNEATPIKNAPPGKKYVRCPCNCLLICKVTSQRIACPRP 152 Query: 464 VSRSKITLAPTKPGCPSNAVLSASARTPQPQVAGVNLVCPIVNNT 598 + I L P PG S P+PQ GV ++C NT Sbjct: 153 YCKRIINLGPVHPGPLS----------PEPQPMGVRVICGHCKNT 187
>RSP1_CAEEL (Q23121) Probable splicing factor, arginine/serine-rich 1| (RNA-binding protein srp-5) (CeSRp75) Length = 312 Score = 29.6 bits (65), Expect = 8.9 Identities = 17/42 (40%), Positives = 23/42 (54%) Frame = -3 Query: 449 GFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAG 324 GFGFV F +DA+ A+ ++G EL G R+ L P G Sbjct: 37 GFGFVEFDDKRDAEDAVHDLNGKELGGE--RVILDYSKPRGG 76
>RU17_HUMAN (P08621) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 437 Score = 29.6 bits (65), Expect = 8.9 Identities = 11/32 (34%), Positives = 20/32 (62%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGR 366 G+ RG+ F+ + +D +A + DG ++DGR Sbjct: 141 GKPRGYAFIEYEHERDMHSAYKHADGKKIDGR 172
>BOULE_DROME (Q24207) Protein boule| Length = 228 Score = 29.6 bits (65), Expect = 8.9 Identities = 16/44 (36%), Positives = 25/44 (56%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPP 330 G S+G+GFV+F T Q+A+ + V L R L ++ A + P Sbjct: 70 GVSKGYGFVTFETEQEAQRLQADGECVVLRDRKLNIAPAIKKQP 113
>TM55B_HUMAN (Q86T03) Transmembrane protein 55B (EC 3.1.3.-) (Type I| phosphatidylinositol 4,5-bisphosphate 4-phosphatase) (PtdIns-4,5-P2 4-Ptase I) Length = 277 Score = 29.6 bits (65), Expect = 8.9 Identities = 29/105 (27%), Positives = 42/105 (40%), Gaps = 8/105 (7%) Frame = +2 Query: 308 LC*ELIQLEGSVLPD*V--GVASHPVPLRPWP-----ARQPLH-LVWCGRRQSQTPSNDP 463 +C LI +EG + V GV + P++ P R P + L+ C + P Sbjct: 86 VCQSLINVEGKMHQHVVKCGVCNEATPIKNAPPGKKYVRCPCNCLLICKVTSQRIACPRP 145 Query: 464 VSRSKITLAPTKPGCPSNAVLSASARTPQPQVAGVNLVCPIVNNT 598 + I L P PG S P+PQ GV ++C NT Sbjct: 146 YCKRIINLGPVHPGPLS----------PEPQPMGVRVICGHCKNT 180
>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 385 Score = 29.6 bits (65), Expect = 8.9 Identities = 16/62 (25%), Positives = 32/62 (51%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKTA 282 G SRG GF+ F +A+ A++ ++G + G +++ N P+ + SQ ++ Sbjct: 175 GVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSP 234 Query: 281 SR 276 +R Sbjct: 235 NR 236
>PAK6_HUMAN (Q9NQU5) Serine/threonine-protein kinase PAK 6 (EC 2.7.11.1)| (p21-activated kinase 6) (PAK-6) (PAK-5) Length = 681 Score = 29.6 bits (65), Expect = 8.9 Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 5/70 (7%) Frame = -3 Query: 407 AALQAMDGVELDG---RPLRLSLAAQN-PPAGSTPSTAQSQQEKTASRGS-EAEPQVDNN 243 A Q++ E G R L+L Q+ PP S P+ K A GS EA PQ Sbjct: 175 AKAQSLGPAEFQGASQRCLQLGACLQSSPPGASPPTGTNRHGMKAAKHGSEEARPQSCLV 234 Query: 242 TSTSGQFGGE 213 S +G+ GGE Sbjct: 235 GSATGRPGGE 244
>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 380 Score = 29.6 bits (65), Expect = 8.9 Identities = 16/62 (25%), Positives = 32/62 (51%) Frame = -3 Query: 461 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKTA 282 G SRG GF+ F +A+ A++ ++G + G +++ N P+ + SQ ++ Sbjct: 170 GVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSP 229 Query: 281 SR 276 +R Sbjct: 230 NR 231
>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)| Length = 367 Score = 29.6 bits (65), Expect = 8.9 Identities = 13/39 (33%), Positives = 23/39 (58%) Frame = -3 Query: 467 TPGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLS 351 T + +GFGFV+ +A A+ +++G L R L++S Sbjct: 320 TTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVS 358
>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic| cerebellar degeneration-associated antigen) (Paraneoplastic limbic encephalitis antigen 21) Length = 367 Score = 29.6 bits (65), Expect = 8.9 Identities = 13/39 (33%), Positives = 23/39 (58%) Frame = -3 Query: 467 TPGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLS 351 T + +GFGFV+ +A A+ +++G L R L++S Sbjct: 320 TTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVS 358 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 107,590,378 Number of Sequences: 219361 Number of extensions: 2484620 Number of successful extensions: 8755 Number of sequences better than 10.0: 234 Number of HSP's better than 10.0 without gapping: 7786 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 8732 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6712189044 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
