>RL27A_OSCBR (O01358) 60S ribosomal protein L27a (Ribosomal protein RPL-27)|
          Length = 145

 Score = 66.2 bits (160), Expect = 2e-11
 Identities = 26/49 (53%), Positives = 40/49 (81%)
 Frame = -2

Query: 346 VNVERLWSMVPSDKAAEAGGDKAPVVDVSQFGYFKVLGKGMLPEKPIVV 200
           VNV+RLW++VP ++  +   +KAPV+D  + GYFKVLGKG+LP++P++V
Sbjct: 73  VNVDRLWALVPEEQKTKVSAEKAPVIDCVKAGYFKVLGKGLLPKQPLIV 121

>RL27A_ARATH (Q9LR33) 60S ribosomal protein L27a-2|
          Length = 146

 Score = 63.5 bits (153), Expect = 1e-10
 Identities = 29/50 (58%), Positives = 39/50 (78%), Gaps = 1/50 (2%)
 Frame = -2

Query: 346 VNVERLWSMVPSDKAAEAGGDKAPVVDVSQFGYFKVLGKGMLPE-KPIVV 200
           VN+++LWS+VP D  A++  D  P++DV+Q G+FKVLGKG LPE KP VV
Sbjct: 73  VNLDKLWSLVPEDVKAKSSKDNVPLIDVTQHGFFKVLGKGHLPENKPFVV 122

>RL27C_ARATH (P49637) 60S ribosomal protein L27a-3|
          Length = 146

 Score = 62.8 bits (151), Expect = 2e-10
 Identities = 29/50 (58%), Positives = 39/50 (78%), Gaps = 1/50 (2%)
 Frame = -2

Query: 346 VNVERLWSMVPSDKAAEAGGDKAPVVDVSQFGYFKVLGKGMLPE-KPIVV 200
           VN+++LWS+VP D  A++  D  P++DV+Q G+FKVLGKG LPE KP VV
Sbjct: 73  VNLDKLWSLVPEDVKAKSTKDNVPLIDVTQHGFFKVLGKGHLPENKPFVV 122

>RL27A_DROME (P41092) 60S ribosomal protein L27a|
          Length = 149

 Score = 57.4 bits (137), Expect = 9e-09
 Identities = 24/52 (46%), Positives = 41/52 (78%), Gaps = 3/52 (5%)
 Frame = -2

Query: 346 VNVERLWSMVPSDKAAEAGGDK---APVVDVSQFGYFKVLGKGMLPEKPIVV 200
           +N+++LWS+V ++K AE   +K   APV+D+ +FGY+K+LG+G LP +P++V
Sbjct: 74  INLDKLWSLVGAEKFAELEKEKSTKAPVIDLVKFGYYKLLGRGHLPARPVIV 125

>R27A2_ENTHI (Q9BH80) 60S ribosomal protein L27a-2/4|
          Length = 149

 Score = 55.5 bits (132), Expect = 3e-08
 Identities = 25/53 (47%), Positives = 37/53 (69%), Gaps = 4/53 (7%)
 Frame = -2

Query: 346 VNVERLWSMVPSDKAAEAG----GDKAPVVDVSQFGYFKVLGKGMLPEKPIVV 200
           +NV+ LWS+V  D  A+      G++ PV+D  + GYFKVLGKG LP++P++V
Sbjct: 73  INVDSLWSLVGKDVQAQYKNAKVGEEVPVIDCVKHGYFKVLGKGFLPKQPVIV 125

>R27A1_ENTHI (Q9BI06) 60S ribosomal protein L27a-1|
          Length = 149

 Score = 55.1 bits (131), Expect = 4e-08
 Identities = 25/53 (47%), Positives = 37/53 (69%), Gaps = 4/53 (7%)
 Frame = -2

Query: 346 VNVERLWSMVPSDKAAEAG----GDKAPVVDVSQFGYFKVLGKGMLPEKPIVV 200
           +NV+ LWS+V  D  A+      G++ PV+D  + GYFKVLGKG LP++P++V
Sbjct: 73  INVDSLWSLVGKDIQAQYKNAKVGEEVPVIDCVKHGYFKVLGKGFLPKQPVIV 125

>RL27A_EUPCR (P48161) 60S ribosomal protein L27a (L29)|
          Length = 148

 Score = 54.7 bits (130), Expect = 6e-08
 Identities = 25/51 (49%), Positives = 38/51 (74%), Gaps = 2/51 (3%)
 Frame = -2

Query: 346 VNVERLWSMVPSDKAAEAGGDKAPVV--DVSQFGYFKVLGKGMLPEKPIVV 200
           +N+ +LWS+V  ++  +A  DK+ V+  DV + GY+KVLGKG+LPE P+VV
Sbjct: 73  INLSKLWSLVTEEERQKAQTDKSKVILIDVVKHGYYKVLGKGLLPEVPLVV 123

>RL28A_SCHPO (P36585) 60S ribosomal protein L28-A (L27A) (L29)|
          Length = 148

 Score = 54.3 bits (129), Expect = 7e-08
 Identities = 26/52 (50%), Positives = 37/52 (71%), Gaps = 3/52 (5%)
 Frame = -2

Query: 346 VNVERLWSMVPS---DKAAEAGGDKAPVVDVSQFGYFKVLGKGMLPEKPIVV 200
           VN++RLW+++P+   DK      + APV++V Q GY KVLGKG LPE P++V
Sbjct: 73  VNLDRLWTLLPNEARDKYLGKNTEVAPVINVLQSGYGKVLGKGRLPETPVIV 124

>RL27A_TETTH (Q00454) 60S ribosomal protein L27a (L29)|
          Length = 149

 Score = 54.3 bits (129), Expect = 7e-08
 Identities = 25/51 (49%), Positives = 36/51 (70%), Gaps = 2/51 (3%)
 Frame = -2

Query: 346 VNVERLWSMVPSDKAAEAGGDK--APVVDVSQFGYFKVLGKGMLPEKPIVV 200
           VN+++LWS+V      +   DK   PV+DV++ G+FKVLGKG LP +P+VV
Sbjct: 75  VNIDKLWSLVSDATRQKYAEDKKKVPVIDVTKAGFFKVLGKGRLPNQPVVV 125

>R27A3_ENTHI (Q9BI14) 60S ribosomal protein L27a-3|
          Length = 149

 Score = 53.9 bits (128), Expect = 1e-07
 Identities = 24/53 (45%), Positives = 36/53 (67%), Gaps = 4/53 (7%)
 Frame = -2

Query: 346 VNVERLWSMVPSDKAAE----AGGDKAPVVDVSQFGYFKVLGKGMLPEKPIVV 200
           +NV+ LWS+V  D   +      G++ PV+D  + GYFKVLGKG LP++P++V
Sbjct: 73  INVDSLWSLVGKDVQEQYKNAKTGEEVPVIDCVKHGYFKVLGKGFLPKQPVIV 125

>RL27A_DICDI (P48160) 60S ribosomal protein L27a|
          Length = 148

 Score = 53.5 bits (127), Expect = 1e-07
 Identities = 27/52 (51%), Positives = 39/52 (75%), Gaps = 3/52 (5%)
 Frame = -2

Query: 346 VNVERLWSMVPSD--KAAEAGGD-KAPVVDVSQFGYFKVLGKGMLPEKPIVV 200
           V++E++W++VP    K+  A  D  APVVDV+Q G+FKVLG G+LP +PI+V
Sbjct: 73  VSLEKIWTLVPESVRKSLAAKNDGTAPVVDVTQKGFFKVLGHGILPTQPIIV 124

>RL27A_RAT (P18445) 60S ribosomal protein L27a|
          Length = 147

 Score = 53.5 bits (127), Expect = 1e-07
 Identities = 23/52 (44%), Positives = 37/52 (71%), Gaps = 3/52 (5%)
 Frame = -2

Query: 346 VNVERLWSMVPSDKAAEAGGDK---APVVDVSQFGYFKVLGKGMLPEKPIVV 200
           VN+++LW++V       A  +K   AP++DV + GY+KVLGKG LP++P++V
Sbjct: 72  VNLDKLWTLVSEQTRVNAAKNKNGVAPIIDVVRSGYYKVLGKGKLPKQPVIV 123

>RL27A_PONPY (Q5REY2) 60S ribosomal protein L27a|
          Length = 147

 Score = 53.5 bits (127), Expect = 1e-07
 Identities = 23/52 (44%), Positives = 37/52 (71%), Gaps = 3/52 (5%)
 Frame = -2

Query: 346 VNVERLWSMVPSDKAAEAGGDK---APVVDVSQFGYFKVLGKGMLPEKPIVV 200
           VN+++LW++V       A  +K   AP++DV + GY+KVLGKG LP++P++V
Sbjct: 72  VNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPVIV 123

>RL27A_PANTR (Q5R1X0) 60S ribosomal protein L27a|
          Length = 147

 Score = 53.5 bits (127), Expect = 1e-07
 Identities = 23/52 (44%), Positives = 37/52 (71%), Gaps = 3/52 (5%)
 Frame = -2

Query: 346 VNVERLWSMVPSDKAAEAGGDK---APVVDVSQFGYFKVLGKGMLPEKPIVV 200
           VN+++LW++V       A  +K   AP++DV + GY+KVLGKG LP++P++V
Sbjct: 72  VNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPVIV 123

>RL27A_HUMAN (P46776) 60S ribosomal protein L27a|
          Length = 147

 Score = 53.5 bits (127), Expect = 1e-07
 Identities = 23/52 (44%), Positives = 37/52 (71%), Gaps = 3/52 (5%)
 Frame = -2

Query: 346 VNVERLWSMVPSDKAAEAGGDK---APVVDVSQFGYFKVLGKGMLPEKPIVV 200
           VN+++LW++V       A  +K   AP++DV + GY+KVLGKG LP++P++V
Sbjct: 72  VNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPVIV 123

>RL28B_SCHPO (P57728) 60S ribosomal protein L28-B|
          Length = 148

 Score = 52.8 bits (125), Expect = 2e-07
 Identities = 24/52 (46%), Positives = 38/52 (73%), Gaps = 3/52 (5%)
 Frame = -2

Query: 346 VNVERLWSMVPSDKAAEAGG---DKAPVVDVSQFGYFKVLGKGMLPEKPIVV 200
           VN++RLW++VP++   +  G   + APV++V Q GY KVLGKG LP+ P+++
Sbjct: 73  VNLDRLWTLVPNETREKYLGKNTEVAPVINVLQSGYGKVLGKGRLPDTPVII 124

>RL28_NEUCR (P08978) 60S ribosomal protein L28 (L27A) (L29) (CRP1)|
          Length = 149

 Score = 52.4 bits (124), Expect = 3e-07
 Identities = 24/53 (45%), Positives = 37/53 (69%), Gaps = 4/53 (7%)
 Frame = -2

Query: 346 VNVERLWSMVPSDKAAE----AGGDKAPVVDVSQFGYFKVLGKGMLPEKPIVV 200
           +N+E+LW++VP++   +    A  + APV+D+   GY K+LGKG LP+ PIVV
Sbjct: 73  LNIEKLWTLVPAEAREKYVSGAATETAPVIDLLSHGYAKLLGKGRLPQVPIVV 125

>RL27A_ERYGR (P78987) 60S ribosomal protein L27a (L29)|
          Length = 149

 Score = 52.0 bits (123), Expect = 4e-07
 Identities = 23/53 (43%), Positives = 36/53 (67%), Gaps = 4/53 (7%)
 Frame = -2

Query: 346 VNVERLWSMVPSDKA----AEAGGDKAPVVDVSQFGYFKVLGKGMLPEKPIVV 200
           +N+E+LWS++P++K     +    D  PV+D+   GY KVLGKG +P+ P+VV
Sbjct: 73  LNLEKLWSLIPAEKREAYLSSTNPDVIPVIDLLPLGYSKVLGKGRIPKVPLVV 125

>RL27A_MOUSE (P14115) 60S ribosomal protein L27a (L29)|
          Length = 147

 Score = 50.8 bits (120), Expect = 8e-07
 Identities = 22/52 (42%), Positives = 36/52 (69%), Gaps = 3/52 (5%)
 Frame = -2

Query: 346 VNVERLWSMVPSDKAAEAGGDK---APVVDVSQFGYFKVLGKGMLPEKPIVV 200
           VN+++ W++V       A  +K   AP++DV + GY+KVLGKG LP++P++V
Sbjct: 72  VNLDKPWTLVSEQTRVNAAKNKTGVAPIIDVVRSGYYKVLGKGKLPKQPVIV 123

>RL28_YEAST (P02406) 60S ribosomal protein L28 (L27A) (L29) (YL24) (RP62)|
          Length = 148

 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 21/53 (39%), Positives = 35/53 (66%), Gaps = 4/53 (7%)
 Frame = -2

Query: 346 VNVERLWSMVPSDKAAE----AGGDKAPVVDVSQFGYFKVLGKGMLPEKPIVV 200
           +N+++LW+++P DK  +    A  + APV+D    GY K+LGKG +P  P++V
Sbjct: 72  LNLDKLWTLIPEDKRDQYLKSASKETAPVIDTLAAGYGKILGKGRIPNVPVIV 124

>RL27A_XENLA (P47830) 60S ribosomal protein L27a (L22)|
          Length = 147

 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
 Frame = -2

Query: 346 VNVERLWSMVPSDKAAEAGGD---KAPVVDVSQFGYFKVLGKGMLPEKPIVV 200
           +N+++LW++V          +    AP++D    GY+KVLGKG LP++P++V
Sbjct: 72  INLDKLWTLVSEQTRLNHAKNLEGPAPIIDAVHAGYYKVLGKGKLPKQPVIV 123

>RL27A_ENCCU (O62581) 60S ribosomal protein L27a|
          Length = 147

 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
 Frame = -2

Query: 346 VNVERLWSMVPSDKAAEA--GGDKAPVVDVSQFGYFKVLGKGMLPEKPIVV 200
           ++  RLW M+P ++  +     +K PV+DV +FGY  V+G  +  E+PIVV
Sbjct: 73  ISSARLWGMIPKEQRYDFLDNPEKVPVIDVREFGYHVVVGGKLSLERPIVV 123

>RL28_CANAL (P47831) 60S ribosomal protein L28 (L27A) (L29) (Fragment)|
          Length = 62

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 17/34 (50%), Positives = 23/34 (67%)
 Frame = -2

Query: 301 AEAGGDKAPVVDVSQFGYFKVLGKGMLPEKPIVV 200
           +++    APV+D    GY KVLGKG LPE P++V
Sbjct: 8   SKSSASAAPVIDTLAHGYGKVLGKGRLPEVPVIV 41

>RL27A_TENMO (Q27021) 60S ribosomal protein L27a|
          Length = 148

 Score = 38.5 bits (88), Expect = 0.004
 Identities = 16/43 (37%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
 Frame = -2

Query: 346 VNVERLWSMVPSDKAAEAGGD---KAPVVDVSQFGYFKVLGKG 227
           +N+++LW++V     ++       KAPV+D+ + GY+K+LGKG
Sbjct: 73  INLDKLWTLVSEQTRSKYQNHPEGKAPVIDIVKAGYYKLLGKG 115

>RL27A_TRYBB (O15883) 60S ribosomal protein L27a (L29)|
          Length = 145

 Score = 33.1 bits (74), Expect = 0.17
 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = -2

Query: 346 VNVERLWSMVPSDKAAEAG-GDKAPVVDVSQFGYFKVLGKGMLPEKPIV 203
           +N++ L  ++  D+A +A  G+  PV+D+   GY K+LG G L    IV
Sbjct: 73  INLDNLTKLMAKDEAMKAKKGEVLPVIDLLANGYSKLLGNGHLQAPCIV 121

>RL15_METJA (P54047) 50S ribosomal protein L15P|
          Length = 143

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 19/48 (39%), Positives = 24/48 (50%)
 Frame = -2

Query: 346 VNVERLWSMVPSDKAAEAGGDKAPVVDVSQFGYFKVLGKGMLPEKPIV 203
           +NV  L  +V  +       D   VVDV + GY KVLGKG +    IV
Sbjct: 73  INVGELEEIVLKNPDKFEKEDDKFVVDVIELGYEKVLGKGKVTIPMIV 120

>RL15_SULAC (O05643) 50S ribosomal protein L15P|
          Length = 144

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 15/49 (30%), Positives = 28/49 (57%)
 Frame = -2

Query: 346 VNVERLWSMVPSDKAAEAGGDKAPVVDVSQFGYFKVLGKGMLPEKPIVV 200
           + + +L   + +DK      +   VVD++++GY K+LG G L   P+V+
Sbjct: 71  IGLRKLQEYIDNDKIKIEEENGKKVVDLAKYGYDKLLGGGNL-RLPLVI 118

>NAL14_HUMAN (Q86W24) NACHT-, LRR- and PYD-containing protein 14|
            (Nucleotide-binding oligomerization domain protein 5)
          Length = 1093

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 159  LIFFSAILEMSLALTTMGFSGSIPLPSTLK*PNCE 263
            LI    +++M+L   T+G+ G + L   LK P C+
Sbjct: 1010 LICNKRLIKMNLTQNTLGYEGIVKLYKVLKSPKCK 1044


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,640,183
Number of Sequences: 219361
Number of extensions: 347245
Number of successful extensions: 673
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 80,573,946
effective HSP length: 91
effective length of database: 60,612,095
effective search space used: 1454690280
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)