ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd15f13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SCFD2_HUMAN (Q8WU76) Sec1 family domain-containing protein 2 (Sy... 29 3.1
2SCFD2_MOUSE (Q8BTY8) Sec1 family domain-containing protein 2 (Sy... 28 5.3

>SCFD2_HUMAN (Q8WU76) Sec1 family domain-containing protein 2 (Syntaxin-binding|
           protein 1-like 1)
          Length = 684

 Score = 29.3 bits (64), Expect = 3.1
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 152 SKPNFGDQSFLIVFVVGGINTLEVREVMKAIS 57
           S+P+  D   LI+FVVGG+   EV+ V   ++
Sbjct: 616 SRPHPSDYPLLILFVVGGVTVSEVKMVKDLVA 647



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>SCFD2_MOUSE (Q8BTY8) Sec1 family domain-containing protein 2 (Syntaxin-binding|
           protein 1-like 1) (Neuronal Sec1)
          Length = 684

 Score = 28.5 bits (62), Expect = 5.3
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 152 SKPNFGDQSFLIVFVVGGINTLEVREVMKAIS 57
           S+P+  D   LI+FVVGG+   E + V   ++
Sbjct: 616 SRPHPSDHPLLILFVVGGVTVAEAKMVKDLVA 647


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,144,883
Number of Sequences: 219361
Number of extensions: 309006
Number of successful extensions: 755
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 80,573,946
effective HSP length: 28
effective length of database: 74,431,838
effective search space used: 1786364112
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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