ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd15f05 |
|---|---|
| Clone Library Name | barley_pub |
>IF41_WHEAT (Q03387) Eukaryotic initiation factor iso-4F subunit p82-34| (eIF-(iso)4F p82-34) Length = 788 Score = 43.5 bits (101), Expect = 6e-04 Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 3/96 (3%) Frame = -2 Query: 664 KITKLLEEYESGGDVGEACKCIREMGMPFFNHEVVKKALVMAMEKKK---EGTLALLHEC 494 K LLEEY + EA +CI E+ P ++ E+VK+A+ +A++K + + LL Sbjct: 626 KTASLLEEYFGIRILDEAQQCIEELQSPDYHPEIVKEAINLALDKGASFVDPLVKLLEHL 685 Query: 493 FGEGIITINQMTKGFSRVRDGLDDLALDIPDARDKF 386 + + + G L+D+ +D+P A +F Sbjct: 686 YTKKTFKTEDLENGCLLYGSLLEDIGIDLPKAPTQF 721
>IF4G2_BOVIN (Q95L46) Eukaryotic translation initiation factor 4 gamma 2| (eIF-4-gamma 2) (eIF-4G 2) (eIF4G 2) (p97) (Fragment) Length = 136 Score = 43.1 bits (100), Expect = 8e-04 Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 8/97 (8%) Frame = -2 Query: 670 KDKITKLLE----EYESGGDVGEACKCIREMGMP-FFNHEVVKKALVMAMEKK---KEGT 515 K+++ KL E EY + G+ EA +REM P F E++ K +++++++ KE Sbjct: 28 KEELLKLTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKA 87 Query: 514 LALLHECFGEGIITINQMTKGFSRVRDGLDDLALDIP 404 +L+ EGI T + + F V D L +DIP Sbjct: 88 SSLISLLKQEGIATSDNFMQAFLNVLDQCPKLEVDIP 124
>IF4G2_HUMAN (P78344) Eukaryotic translation initiation factor 4 gamma 2| (eIF-4-gamma 2) (eIF-4G 2) (eIF4G 2) (p97) (Death-associated protein 5) (DAP-5) Length = 907 Score = 43.1 bits (100), Expect = 8e-04 Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 8/97 (8%) Frame = -2 Query: 670 KDKITKLLE----EYESGGDVGEACKCIREMGMP-FFNHEVVKKALVMAMEKK---KEGT 515 K+++ KL E EY + G+ EA +REM P F E++ K +++++++ KE Sbjct: 541 KEELLKLTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKA 600 Query: 514 LALLHECFGEGIITINQMTKGFSRVRDGLDDLALDIP 404 +L+ EGI T + + F V D L +DIP Sbjct: 601 SSLISLLKQEGIATSDNFMQAFLNVLDQCPKLEVDIP 637
>IF4G2_RABIT (P79398) Eukaryotic translation initiation factor 4 gamma 2| (eIF-4-gamma 2) (eIF-4G 2) (eIF4G 2) (p97) (Novel APOBEC-1 target 1) (Translation repressor NAT1) Length = 907 Score = 40.8 bits (94), Expect = 0.004 Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 8/97 (8%) Frame = -2 Query: 670 KDKITKLLE----EYESGGDVGEACKCIREMGMP-FFNHEVVKKALVMAMEKK---KEGT 515 K+++ KL E EY + G+ EA ++EM P F E++ K +++++++ KE Sbjct: 541 KEELLKLTETVVTEYLNSGNANEAVNGVKEMRAPKHFLPEMLSKVIILSLDRSDEDKEKA 600 Query: 514 LALLHECFGEGIITINQMTKGFSRVRDGLDDLALDIP 404 +L+ EGI T + + F V D L +DIP Sbjct: 601 SSLISLLKQEGIGTSDNFMQAFLNVLDQCPKLEVDIP 637
>IF4G1_RABIT (P41110) Eukaryotic translation initiation factor 4 gamma 1| (eIF-4-gamma 1) (eIF-4G1) (eIF-4G 1) (p220) Length = 1402 Score = 39.7 bits (91), Expect = 0.008 Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 3/90 (3%) Frame = -2 Query: 664 KITKLLEEYESGGDVGEACKCIREMGMPFFNHEVVKKALVMAMEKK---KEGTLALLHEC 494 K ++EEY D+ EA +C++E+ P V+ + +E+ +E LLH+ Sbjct: 1048 KSKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGIESTLERSAIARERMGQLLHQL 1107 Query: 493 FGEGIITINQMTKGFSRVRDGLDDLALDIP 404 G ++ Q +G + + +D+ +DIP Sbjct: 1108 LCAGHLSTAQYYQGLYEILELAEDMEIDIP 1137
>IF4G2_MOUSE (Q62448) Eukaryotic translation initiation factor 4 gamma 2| (eIF-4-gamma 2) (eIF-4G 2) (eIF4G 2) (p97) (Novel APOBEC-1 target 1) (Translation repressor NAT1) Length = 906 Score = 39.3 bits (90), Expect = 0.011 Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 8/97 (8%) Frame = -2 Query: 670 KDKITKLLE----EYESGGDVGEACKCIREMGMP-FFNHEVVKKALVMAMEKK---KEGT 515 K+++ KL E +Y + G+ +A +REM P F E++ K +++++++ KE Sbjct: 540 KEELLKLTEAVVTDYLNSGNANDAVSGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKA 599 Query: 514 LALLHECFGEGIITINQMTKGFSRVRDGLDDLALDIP 404 +L+ EGI T + + F V + L +DIP Sbjct: 600 SSLISLLKQEGIATSDNFMQAFLNVLEQCPKLEVDIP 636
>IF4G1_HUMAN (Q04637) Eukaryotic translation initiation factor 4 gamma 1| (eIF-4-gamma 1) (eIF-4G1) (eIF-4G 1) (p220) Length = 1600 Score = 39.3 bits (90), Expect = 0.011 Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 3/90 (3%) Frame = -2 Query: 664 KITKLLEEYESGGDVGEACKCIREMGMPFFNHEVVKKALVMAMEKK---KEGTLALLHEC 494 K ++EEY D+ EA +C++E+ P V+ + +E+ +E LLH+ Sbjct: 1246 KSKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQL 1305 Query: 493 FGEGIITINQMTKGFSRVRDGLDDLALDIP 404 G ++ Q +G + + +D+ +DIP Sbjct: 1306 LCAGHLSTAQYYQGLYEILELAEDMEIDIP 1335
>IF4G1_MOUSE (Q6NZJ6) Eukaryotic translation initiation factor 4 gamma 1| (eIF-4-gamma 1) (eIF-4G1) (eIF-4G 1) Length = 1600 Score = 38.1 bits (87), Expect = 0.024 Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 3/90 (3%) Frame = -2 Query: 664 KITKLLEEYESGGDVGEACKCIREMGMPFFNHEVVKKALVMAMEKK---KEGTLALLHEC 494 K ++EEY D+ EA +C++E+ P V+ + +E+ +E LLH+ Sbjct: 1245 KSKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRLGIESTLERSTIAREHMGRLLHQL 1304 Query: 493 FGEGIITINQMTKGFSRVRDGLDDLALDIP 404 G ++ Q +G + +D+ +DIP Sbjct: 1305 LCAGHLSTAQYYQGLYETLELAEDMEIDIP 1334
>IF4G3_MOUSE (Q80XI3) Eukaryotic translation initiation factor 4 gamma 3| (eIF-4-gamma 3) (eIF-4G 3) (eIF4G 3) (eIF-4-gamma II) (eIF4GII) Length = 1579 Score = 36.6 bits (83), Expect = 0.071 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 3/90 (3%) Frame = -2 Query: 664 KITKLLEEYESGGDVGEACKCIREMGMPFFNHEVVKKALVMAMEKK---KEGTLALLHEC 494 K +++E+ D EA +CI E+ H VK + +E+ ++ LL++ Sbjct: 1219 KSKSIIDEFLHINDFKEATQCIEELSAQGPLHVFVKVGVEFTLERSQITRDHMGHLLYQL 1278 Query: 493 FGEGIITINQMTKGFSRVRDGLDDLALDIP 404 ++ KGFS + DD+A+DIP Sbjct: 1279 VQSEKLSKQDFFKGFSETLELADDMAIDIP 1308
>IF4G3_HUMAN (O43432) Eukaryotic translation initiation factor 4 gamma 3| (eIF-4-gamma 3) (eIF-4G 3) (eIF4G 3) (eIF-4-gamma II) (eIF4GII) Length = 1585 Score = 36.6 bits (83), Expect = 0.071 Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 3/90 (3%) Frame = -2 Query: 664 KITKLLEEYESGGDVGEACKCIREMGMPFFNHEVVKKALVMAMEKK---KEGTLALLHEC 494 K +++E+ D EA +C+ E+ H V+ + +E+ ++ LL++ Sbjct: 1225 KSKSIIDEFLHINDFKEAMQCVEELNAQGLLHVFVRVGVESTLERSQITRDHMGQLLYQL 1284 Query: 493 FGEGIITINQMTKGFSRVRDGLDDLALDIP 404 ++ KGFS + DD+A+DIP Sbjct: 1285 VQSEKLSKQDFFKGFSETLELADDMAIDIP 1314
>HMWC_DESVH (P24092) High-molecular-weight cytochrome c precursor (Cytochrome| CC3) Length = 545 Score = 34.3 bits (77), Expect = 0.35 Identities = 37/142 (26%), Positives = 57/142 (40%), Gaps = 5/142 (3%) Frame = +2 Query: 203 ASETQTQMHTN*VGCTTLWLPASSRSSLMLPVCSVIGSSRSSNAERGYEPSVLLPILHVG 382 A+E + H N +GC T A ++ C + + S A E +G Sbjct: 103 AAELKEIYHANCIGCHTDLAKAGKKTGPQDGECRSCHNPKPSAASSWKE---------IG 153 Query: 383 EELVPGIRYVEGQIVKPVPDP*EPLGHLVDGYDPFAKALV-----QQSKRALFLLLHCHD 547 + R+V + +KPV DP + G YD +K LV + S RA CH Sbjct: 154 FDKSLHYRHVASKAIKPVGDPQKNCGACHHVYDEASKKLVWGKNKEDSCRA------CHG 207 Query: 548 ERLLDHLMVEERHAHLTDALAC 613 E+ +D + AH T ++C Sbjct: 208 EKPVDKRPALDTAAH-TACISC 228
>JHD1B_MOUSE (Q6P1G2) JmjC domain-containing histone demethylation protein 1B| (EC 1.14.11.-) (F-box/LRR-repeat protein 10) (F-box and leucine-rich repeat protein 10) (F-box protein FBL10) Length = 1309 Score = 32.0 bits (71), Expect = 1.7 Identities = 18/49 (36%), Positives = 26/49 (53%) Frame = +3 Query: 78 ETEHSKEQQRVCPEMQRSRHEPPPQASKRGSLTYLRRKSRDVHQKRKRK 224 E + +++ C E R R + P+ + LRRKS DVH +RKRK Sbjct: 732 EGQEPAKRRSECEEAPRRRSDEHPKKVPADGI--LRRKSDDVHLRRKRK 778
>PUR4_XYLFT (Q87DN2) Phosphoribosylformylglycinamidine synthase (EC 6.3.5.3)| (FGAM synthase) (FGAMS) (Formylglycinamide ribotide amidotransferase) (FGARAT) (Formylglycinamide ribotide synthetase) Length = 1322 Score = 30.4 bits (67), Expect = 5.1 Identities = 17/43 (39%), Positives = 21/43 (48%) Frame = -1 Query: 278 TAKTQAAIVWCSPPSSCAFAFAFLMHVPGLAS*VGQRAPLACL 150 TA+ Q W P + CA A G A +G+RAPLA L Sbjct: 688 TAREQMIGPWQLPLADCAITLAGFSSYAGEAFAIGERAPLALL 730
>SED5_YEAST (Q01590) Integral membrane protein SED5| Length = 340 Score = 29.6 bits (65), Expect = 8.7 Identities = 15/59 (25%), Positives = 28/59 (47%) Frame = -2 Query: 523 EGTLALLHECFGEGIITINQMTKGFSRVRDGLDDLALDIPDARDKFLSYVENGKKNGWL 347 E T+ + F + + + + R+ +DD+ L+I A+ + L Y + K N WL Sbjct: 263 ESTIQEVGNLFQQLASMVQEQGEVIQRIDANVDDIDLNISGAQRELLKYFDRIKSNRWL 321
>I17RB_MOUSE (Q9JIP3) Interleukin-17 receptor B precursor (IL-17 receptor B)| (IL-17RB) (Interleukin-17B receptor) (IL-17B receptor) (IL-17 receptor homolog 1) (IL-17Rh1) (IL17Rh1) (IL-17ER) Length = 499 Score = 29.6 bits (65), Expect = 8.7 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = -3 Query: 378 TWRMGRRTDGSYPLSALLLRL 316 TWR GR T S+P+S +LL L Sbjct: 308 TWRQGRSTKTSFPISTMLLPL 328
>5HT4R_RAT (Q62758) 5-hydroxytryptamine 4 receptor (5-HT-4) (Serotonin| receptor 4) (5-HT4) Length = 406 Score = 29.6 bits (65), Expect = 8.7 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%) Frame = +2 Query: 455 LGHLVDGYDPFAKALVQQS-KRALFLLLHCHDER 553 LG++ G +PF A + +S +RA ++L C DER Sbjct: 300 LGYINSGLNPFLYAFLNKSFRRAFLIILCCDDER 333
>ARY1_HUMAN (P18440) Arylamine N-acetyltransferase 1 (EC 2.3.1.5) (Arylamide| acetylase 1) (Arylamine N-acetyltransferase, monomorphic) (MNAT) (N-acetyltransferase type 1) (NAT-1) Length = 290 Score = 29.6 bits (65), Expect = 8.7 Identities = 17/40 (42%), Positives = 20/40 (50%) Frame = -3 Query: 171 TSPSCLLVVVAHV*IFASLDIPFAVLCCVPFQLLHRHFSY 52 TSPS + + F SL P V C V F L HR F+Y Sbjct: 211 TSPSSVFTSKS----FCSLQTPDGVHCLVGFTLTHRRFNY 246
>5HT4R_MOUSE (P97288) 5-hydroxytryptamine 4 receptor (5-HT-4) (Serotonin| receptor 4) (5-HT4) Length = 388 Score = 29.6 bits (65), Expect = 8.7 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%) Frame = +2 Query: 455 LGHLVDGYDPFAKALVQQS-KRALFLLLHCHDER 553 LG++ G +PF A + +S +RA ++L C DER Sbjct: 300 LGYINSGLNPFLYAFLNKSFRRAFLIILCCDDER 333
>5HT4R_HUMAN (Q13639) 5-hydroxytryptamine 4 receptor (5-HT-4) (Serotonin| receptor 4) (5-HT4) Length = 388 Score = 29.6 bits (65), Expect = 8.7 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%) Frame = +2 Query: 455 LGHLVDGYDPFAKALVQQS-KRALFLLLHCHDER 553 LG++ G +PF A + +S +RA ++L C DER Sbjct: 300 LGYINSGLNPFLYAFLNKSFRRAFLIILCCDDER 333
>5HT4R_CAVPO (O70528) 5-hydroxytryptamine 4 receptor (5-HT-4) (Serotonin| receptor 4) (5-HT4) Length = 388 Score = 29.6 bits (65), Expect = 8.7 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%) Frame = +2 Query: 455 LGHLVDGYDPFAKALVQQS-KRALFLLLHCHDER 553 LG++ G +PF A + +S +RA ++L C DER Sbjct: 300 LGYINSGLNPFLYAFLNKSFRRAFLIILCCDDER 333 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 99,818,061 Number of Sequences: 219361 Number of extensions: 2218975 Number of successful extensions: 7594 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 7153 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7583 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6541540170 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
